Psyllid ID: psy13443

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEEEEEEEEEEEEEDNIEQEFLFE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHcccccHHHHHHHHcccccccccccHHHHHccccHHHHHccccccccccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccEccccHHHHHHHHccccccccccHccHHHHHHHHHHccccccccccccccccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHccccccccccHccccEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MLRHVRTHLAKqqfecdfcpygakqaadVHNHVQQIHMGVNFVCvhckqfevvptrktqtlehcatcvdmvrpdasyTYMCYLcnyhtptrkymrthidthngekpfrCALCAYSARRKthlddhmrrhtgekphacgmcgyecaqgSQLMQHLRKVHKvdkkggeeeeeeeeeeeeedNIEQEFLFE
Flexible Loop (DISEMBL)
mlrhvrthlakqqFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEvvptrktqtlehCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKkggeeeeeeeeeeeeednieqeflfe
Low Complexity Region (SEG)
MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGeeeeeeeeeeeeeDNIEQEFLFE
Disordered region (IsUnstruct)
*******HLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHL***********PHACGMCGYECAQGSQL**************************************
Disordered Region (DISOPRED)
MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEEE*************EQEFLFE
Disordered Region (DISEMBL)
MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH***********************************
Disordered Region (DISPRO)
MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEEEEEEEEEEEEEDNI*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKxxxxxxxxxxxxxxxxxxxxxxxxxFLFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q2EI21	1501	RE1-silencing transcripti	N/A	N/A	0.377	0.047	0.425	1e-15
O54963	1069	RE1-silencing transcripti	no	N/A	0.404	0.071	0.428	2e-15
Q13127	1097	RE1-silencing transcripti	yes	N/A	0.409	0.070	0.423	2e-15
Q8VIG1	1082	RE1-silencing transcripti	no	N/A	0.404	0.070	0.428	2e-15
P10076	861	Zinc finger protein 26 OS	no	N/A	0.765	0.167	0.300	3e-15
Q9PVG3	529	RE1-silencing transcripti	N/A	N/A	0.377	0.134	0.437	2e-14
Q7ZVR6	810	Myoneurin OS=Danio rerio	no	N/A	0.776	0.180	0.329	2e-14
Q5R5U3	672	Zinc finger protein 271 O	no	N/A	0.776	0.217	0.321	3e-14
Q6NX49	715	Zinc finger protein 544 O	no	N/A	0.803	0.211	0.331	4e-14
Q2EI20	855	RE1-silencing transcripti	no	N/A	0.244	0.053	0.421	5e-14

>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xenopus laevis GN=rest-a PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 49/80 (61%)

Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           Y C  C+Y +  +     HI TH GE+P++C +C YS+ +KTHL  HMR H+GEKP  C 
Sbjct: 274 YTCSQCSYFSDRKNNYIQHIRTHTGERPYQCIICLYSSSQKTHLTRHMRTHSGEKPFKCE 333

Query: 139 MCGYECAQGSQLMQHLRKVH 158
            C Y  +   ++ +H R+VH
Sbjct: 334 QCSYVASNQHEVTRHARQVH 353

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.
Xenopus laevis (taxid: 8355)

>sp|O54963|REST_RAT RE1-silencing transcription factor OS=Rattus norvegicus GN=Rest PE=2 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           Y C  CNY +  +     H+ TH GE+P++C LC YS+ +KTHL  HMR H+GEKP  C 
Sbjct: 275 YTCSKCNYFSTEKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCD 334

Query: 139 MCGYECAQGSQLMQHLRKVHKVDK 162
            C Y  +   ++ +H R+VH   K
Sbjct: 335 QCNYVASNQHEVTRHARQVHNGPK 358

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Rattus norvegicus (taxid: 10116)

>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1 SV=3

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 50/85 (58%)

Query: 78  TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC 137
            Y C  CNY +  +     H+ TH GE+P++C LC YS+ +KTHL  HMR H+GEKP  C
Sbjct: 275 VYTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKC 334

Query: 138 GMCGYECAQGSQLMQHLRKVHKVDK 162
             C Y  +   ++ +H R+VH   K
Sbjct: 335 DQCSYVASNQHEVTRHARQVHNGPK 359

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Homo sapiens (taxid: 9606)

>sp|Q8VIG1|REST_MOUSE RE1-silencing transcription factor OS=Mus musculus GN=Rest PE=2 SV=2

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           Y C  CNY +  +     H+ TH GE+P++C LC YS+ +KTHL  HMR H+GEKP  C 
Sbjct: 271 YTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCD 330

Query: 139 MCGYECAQGSQLMQHLRKVHKVDK 162
            C Y  +   ++ +H R+VH   K
Sbjct: 331 QCNYVASNQHEVTRHARQVHNGPK 354

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Mus musculus (taxid: 10090)

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 4   HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEH 63
           H+++H  ++ ++C  C     + + +  H++Q     ++ C  C +  + P+R T+    
Sbjct: 264 HMQSHTVEKPYDCKECGKAFTERSSLIVHLRQHTREKSYECKECGKTFIQPSRLTE---- 319

Query: 64  CATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLD 123
                 M        Y C  C     +  Y+ TH+ TH GEKPF C +C  +  R ++L 
Sbjct: 320 -----HMRSHTGEKPYQCDQCGNAFASSSYLTTHLRTHTGEKPFECNICGKAFTRSSYLL 374

Query: 124 DHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
            H+R HTGEKP+ C +CG   +  S L  HLRK
Sbjct: 375 GHIRTHTGEKPYECKVCGKAFSGRSWLTIHLRK 407

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q9PVG3|RESTB_XENLA RE1-silencing transcription factor B (Fragment) OS=Xenopus laevis GN=rest-b PE=2 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 49/80 (61%)

Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           Y C  C+Y +  +     HI TH GE+P++C LC YS+ +KTHL  HMR H+GEKP  C 
Sbjct: 272 YTCSQCSYFSDRKNNYIQHIRTHTGERPYQCILCPYSSSQKTHLTRHMRTHSGEKPFKCE 331

Query: 139 MCGYECAQGSQLMQHLRKVH 158
            C Y  +   ++ +H R+VH
Sbjct: 332 QCSYVASNQHEVTRHARQVH 351

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|Q7ZVR6|MYNN_DANRE Myoneurin OS=Danio rerio GN=mynn PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 73/158 (46%), Gaps = 12/158 (7%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
           + RH+R H   + ++C  C    +Q   +  H++ IH G   F C  C  +F     +K 
Sbjct: 487 LRRHMRIHKGLKPYQCTLCTRSFRQGNQLKTHMR-IHTGEKPFTCTSCDSRF----AQKC 541

Query: 59  QTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR 118
           Q + HC       +P     Y C  C     T   ++ HI  H+GEKP+ C  C     +
Sbjct: 542 QLVYHCRMHHGEEKP-----YKCEFCGAAFATSSNLKIHIRKHSGEKPYECGECGKRFTQ 596

Query: 119 KTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
            + L  H RRHTGEKP+ C  CG   A  S L+ H RK
Sbjct: 597 ASTLMYHKRRHTGEKPYICDTCGMAFAVSSSLIAHNRK 634

Danio rerio (taxid: 7955)

>sp|Q5R5U3|ZN271_PONAB Zinc finger protein 271 OS=Pongo abelii GN=ZNF271 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 22/168 (13%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQF----EVVP 54
           +++H R H  ++ ++CD C     Q++D+  H Q+IH G   + C HC K F    ++V 
Sbjct: 150 LIKHQRVHTGEKPYKCDECGKAFSQSSDLIIH-QRIHTGEKPYQCSHCSKSFSQRSDLVK 208

Query: 55  TRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAY 114
            ++  T E         +P     Y C  CN H      +  H   H GEKP++C +CA 
Sbjct: 209 HQRIHTGE---------KP-----YTCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCAK 254

Query: 115 SARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
           +  + + L  H R HTGEKP+ C  C    +Q S L++H R++H  +K
Sbjct: 255 AFSQSSDLILHQRIHTGEKPYPCNQCSKSFSQNSDLIKH-RRIHTGEK 301

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q6NX49|ZN544_HUMAN Zinc finger protein 544 OS=Homo sapiens GN=ZNF544 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHCKQFEVVPTRKTQ 59
           ++ H RTH  ++ +ECD C     Q + +  H Q+IH G   + C+ C++      R   
Sbjct: 395 LVIHQRTHTGEKPYECDLCGKSFTQRSKLITH-QRIHTGEKPYQCIECRK----SFRWNS 449

Query: 60  TLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRK 119
            L      V          Y C  C         + TH  TH GEKPF+C  C  S  +K
Sbjct: 450 NL-----IVHQRIHTGEKPYECTHCGKSFSQSYELVTHKRTHTGEKPFKCTQCGKSFSQK 504

Query: 120 THLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
             L  H R HTGEKP+ C +CG   +Q S+L+ H R +H  +K
Sbjct: 505 YDLVVHQRTHTGEKPYECNLCGKSFSQSSKLITHQR-IHTGEK 546

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio rerio GN=rest PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%)

Query: 76  SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPH 135
           S  + C  C+Y +  +     HI TH GE+PF+C  C YS+ +KTHL  HMR H+GE+P 
Sbjct: 261 SKLFTCSQCSYFSDRKNNYIQHIRTHAGERPFQCIYCEYSSSQKTHLTRHMRTHSGERPF 320

Query: 136 ACGMCGYECAQGSQLMQHLRKVH 158
            C  C Y  A   ++ +H R+VH
Sbjct: 321 KCDNCSYLAANQHEVTRHARQVH 343

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
260823000	644	hypothetical protein BRAFLDRAFT_71741 [B	0.776	0.226	0.367	1e-21
260782884	735	hypothetical protein BRAFLDRAFT_106413 [	0.787	0.201	0.388	2e-21
260823104	1395	hypothetical protein BRAFLDRAFT_71688 [B	0.808	0.108	0.355	2e-21
260783431	830	hypothetical protein BRAFLDRAFT_102936 [	0.776	0.175	0.348	2e-20
260832614	2406	hypothetical protein BRAFLDRAFT_119658 [	0.781	0.061	0.371	3e-20
260787891	1337	hypothetical protein BRAFLDRAFT_89176 [B	0.824	0.115	0.346	4e-20
260823110	263	hypothetical protein BRAFLDRAFT_57765 [B	0.776	0.555	0.367	4e-20
260822996	662	hypothetical protein BRAFLDRAFT_71743 [B	0.781	0.222	0.371	4e-20
260810939	3220	hypothetical protein BRAFLDRAFT_66688 [B	0.803	0.046	0.365	5e-20
260806360	318	hypothetical protein BRAFLDRAFT_252967 [	0.824	0.487	0.36	5e-20

>gi|260823000|ref|XP_002603971.1| hypothetical protein BRAFLDRAFT_71741 [Branchiostoma floridae] gi|229289296|gb|EEN59982.1| hypothetical protein BRAFLDRAFT_71741 [Branchiostoma floridae]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 9/155 (5%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQT 60
           + RH+RTH  ++ ++CD C Y A + + + +HV+  H G       C Q +   T+K+  
Sbjct: 456 LSRHMRTHTGEKPYKCDQCDYSAAEKSKLSDHVR-THTGEKPY--KCDQCDYSATQKSNL 512

Query: 61  LEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT 120
             H      +V       YMC  C Y T  +     H+ TH GEKP++C  C YSA RK+
Sbjct: 513 DRH------LVTHTGDKPYMCGECGYRTAQKSDFSKHMRTHTGEKPYKCDQCDYSAARKS 566

Query: 121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           HLD+H+ +H+G+KP+ CG CGY  A+   L +H+R
Sbjct: 567 HLDNHLAKHSGDKPYMCGECGYRTARKHHLSRHMR 601

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260782884|ref|XP_002586510.1| hypothetical protein BRAFLDRAFT_106413 [Branchiostoma floridae] gi|229271625|gb|EEN42521.1| hypothetical protein BRAFLDRAFT_106413 [Branchiostoma floridae]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 9/157 (5%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHCKQFEVVP-TRKT 58
           + RH+RTH A++ + C  C Y   Q  D+  H++  H G N ++C  C        T ++
Sbjct: 71  LSRHMRTHTAEKPYMCGECEYKTIQKCDLSRHMR-THTGENLYMCGQCDYSAAQKCTLES 129

Query: 59  QTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR 118
             L+H A      +      +MC  C Y TP ++Y+  H+  H GEKP++C  C YSA R
Sbjct: 130 HLLKHTA------KHTGEKLFMCGECGYRTPYKRYLSRHMLVHTGEKPYKCDQCDYSAAR 183

Query: 119 KTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           K++LD H+ +HTGEKP+ CG CGY  A  SQL +H+R
Sbjct: 184 KSNLDSHLLKHTGEKPYMCGECGYRMAHKSQLTKHMR 220

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823104|ref|XP_002604023.1| hypothetical protein BRAFLDRAFT_71688 [Branchiostoma floridae] gi|229289348|gb|EEN60034.1| hypothetical protein BRAFLDRAFT_71688 [Branchiostoma floridae]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 88/177 (49%), Gaps = 25/177 (14%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQT 60
           + RH+RTH  ++ ++CD C Y A Q +++  H+ Q      ++C  C       TRK+  
Sbjct: 163 LSRHMRTHTGEKPYKCDLCDYSAAQKSNLVQHLSQHTGEKPYMCGECG---FRATRKSTL 219

Query: 61  LEH-----------CATC---------VD--MVRPDASYTYMCYLCNYHTPTRKYMRTHI 98
           L H           C  C         +D  +V+      YMC  C Y    +  +  H+
Sbjct: 220 LAHMRIHTGERPYKCDQCDYSAGQKCDLDKHLVKHTGEKPYMCGECGYRANYKVSLSQHM 279

Query: 99  DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
             H GEKP++C  C YSA  K +L DH RRHTGE+P+ CG CGY  AQ S L QH+R
Sbjct: 280 SIHTGEKPYKCDQCDYSAAEKLNLIDHQRRHTGERPYMCGECGYRAAQRSTLSQHMR 336

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260783431|ref|XP_002586778.1| hypothetical protein BRAFLDRAFT_102936 [Branchiostoma floridae] gi|229271904|gb|EEN42789.1| hypothetical protein BRAFLDRAFT_102936 [Branchiostoma floridae]

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 9/155 (5%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQT 60
           + RH++TH   + ++CD C Y A + +D+  HV++      + C HC       T +  +
Sbjct: 681 LSRHMKTHTGGKLYKCDQCNYSAARKSDLSFHVKRHRGEKLYKCDHCD----YSTTQKSS 736

Query: 61  LEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT 120
           L+     + + +      YMC  C Y T  +  +  H+ TH G+KP++C  C Y + RK+
Sbjct: 737 LD-----IHLSKHTGEKPYMCGECGYRTARKSDLSIHMRTHTGDKPYKCDQCDYVSSRKS 791

Query: 121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           +LD H+R+HTGEKP+ CG CGY  A  S L +H+R
Sbjct: 792 NLDQHVRKHTGEKPYKCGECGYRTAHKSHLSKHMR 826

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832614|ref|XP_002611252.1| hypothetical protein BRAFLDRAFT_119658 [Branchiostoma floridae] gi|229296623|gb|EEN67262.1| hypothetical protein BRAFLDRAFT_119658 [Branchiostoma floridae]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 4    HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEH 63
            H+RTH   + ++CD C Y A +  ++  H+ + H+G       C Q +    RK    +H
Sbjct: 2234 HMRTHTGVKPYKCDHCDYSAARKRNLDRHISK-HVGEKPY--KCDQCDYSAARKVYLYQH 2290

Query: 64   CATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLD 123
             A          +  YMC  C + T  + Y+  H+ TH+G KP++C  C YS  RK HLD
Sbjct: 2291 MAK--------HNKPYMCGECGFRTADKSYLTIHLRTHSGVKPYKCGQCDYSTARKGHLD 2342

Query: 124  DHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
             HM +HTGEKP+ CG CG+  A+ S L +H+R  H  DK
Sbjct: 2343 IHMTKHTGEKPYVCGECGHRTARKSALSRHMR-THTGDK 2380

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260787891|ref|XP_002588985.1| hypothetical protein BRAFLDRAFT_89176 [Branchiostoma floridae] gi|229274157|gb|EEN44996.1| hypothetical protein BRAFLDRAFT_89176 [Branchiostoma floridae]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 21/176 (11%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVC--------------V 45
           +  H RTH  ++ ++CD C Y A Q ++++ HV  +H G   ++C              +
Sbjct: 471 LSEHTRTHTGEKPYKCDQCDYSAAQKSNLNQHVA-MHTGDKPYMCGECGYRAMQKSTLTI 529

Query: 46  HCKQFEVVPTRKTQTLEHCATCVD-----MVRPDASYTYMCYLCNYHTPTRKYMRTHIDT 100
           H +    +   K    ++ ATC       + +      YMC  C Y T     +  H+ T
Sbjct: 530 HMRTHTGLKPYKCNQCDYSATCKSTLSQHLAKHTGDKPYMCGECGYRTAKNSELSRHMRT 589

Query: 101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
           H GEKP++C  C YSA RK HLD H+  HTG+KP+ CG CGY  AQ   L QH+RK
Sbjct: 590 HTGEKPYKCDQCDYSATRKHHLDQHLAIHTGDKPYMCGECGYRAAQKCTLSQHMRK 645

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823110|ref|XP_002604026.1| hypothetical protein BRAFLDRAFT_57765 [Branchiostoma floridae] gi|229289351|gb|EEN60037.1| hypothetical protein BRAFLDRAFT_57765 [Branchiostoma floridae]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 9/155 (5%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQT 60
           + RH+RTH  ++ ++CD C Y A Q + +  H+++      + C  C    V   +K+  
Sbjct: 109 LSRHMRTHTGEKPYKCDQCDYSAAQKSTLDQHLRKHTGEKPYTCGECGYRSV---QKSDL 165

Query: 61  LEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT 120
            +H      M        Y C  C Y T  +  +  H+ TH+GEKP+ C  C YSA  K+
Sbjct: 166 SKH------MRTHTGEKPYKCGECGYRTAYKSDLSRHMRTHSGEKPYMCGQCDYSATEKS 219

Query: 121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           HLD H+R+HTGEKP+ CG CGY   Q S L +H+R
Sbjct: 220 HLDRHLRKHTGEKPYMCGECGYRTTQKSVLSRHMR 254

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260822996|ref|XP_002603969.1| hypothetical protein BRAFLDRAFT_71743 [Branchiostoma floridae] gi|229289294|gb|EEN59980.1| hypothetical protein BRAFLDRAFT_71743 [Branchiostoma floridae]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 9/156 (5%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQT 60
           + RH+RTH   + ++CD C Y A Q  D+  H++  H G       C Q +    RK+  
Sbjct: 369 LSRHMRTHTKDRPYKCDQCDYSAAQKFDLSKHMR-THTGDKPY--KCDQCDYSAARKSSL 425

Query: 61  LEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT 120
            +H A      R      +MC  C Y +  +  + TH+ TH G+KP++C  C Y    K+
Sbjct: 426 DQHLANHTREQR------FMCGECGYRSAQKSNLSTHMRTHTGDKPYKCDQCGYRTAWKS 479

Query: 121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
           HL  HMR HTGEKP+ C  C Y  AQ S L QH+ K
Sbjct: 480 HLSQHMRTHTGEKPYKCDQCDYSAAQKSTLDQHVIK 515

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260810939|ref|XP_002600180.1| hypothetical protein BRAFLDRAFT_66688 [Branchiostoma floridae] gi|229285466|gb|EEN56192.1| hypothetical protein BRAFLDRAFT_66688 [Branchiostoma floridae]

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 88/178 (49%), Gaps = 27/178 (15%)

Query: 1    MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHCKQFEVVPTRKTQ 59
            + RH+  H  ++ ++CD C Y A Q   +  H+  IH G   + C  C        R + 
Sbjct: 2340 LSRHIVKHTGEKPYKCDQCDYSAAQKGTLDQHMV-IHSGEKPYACGECG---YRTARNSD 2395

Query: 60   TLEH-----------CATC-------VDMVRPDASYT----YMCYLCNYHTPTRKYMRTH 97
             L+H           C  C        ++ R  A +T    YMC  C Y T  R  + TH
Sbjct: 2396 LLKHLRIHTGERPYRCDQCDYSAGWKANLDRHLAKHTGDKPYMCGECGYRTIVRSSLATH 2455

Query: 98   IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
            + TH GEKP++C  C YSA RK HLD HM +HTGEKP+ CG CGY   + S L +H+R
Sbjct: 2456 MRTHTGEKPYKCDQCEYSASRKNHLDRHMAKHTGEKPYMCGECGYRTVERSHLSRHMR 2513

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260806360|ref|XP_002598052.1| hypothetical protein BRAFLDRAFT_252967 [Branchiostoma floridae] gi|229283323|gb|EEN54064.1| hypothetical protein BRAFLDRAFT_252967 [Branchiostoma floridae]

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 20/175 (11%)

Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-----KQFEVVP 54
           + RH+RTH   + ++CD C Y A Q A++  H+  IH G   ++C  C     ++  +  
Sbjct: 26  LSRHMRTHTGDKPYKCDQCDYSAAQRANLDKHIAAIHTGEKPYMCGECGYRTAEKSTLSI 85

Query: 55  TRKTQTLEHCATC------------VDMVRP--DASYTYMCYLCNYHTPTRKYMRTHIDT 100
             +T T E    C            +D  R        YMC  C Y    R  +  H+ T
Sbjct: 86  HMRTHTREKPYKCDQCDYSAAVKCNLDTHRTTHTGDKPYMCGKCGYRAAQRSTLSKHMRT 145

Query: 101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           H GEKPF+C  C YSA +K+ L  HMR HTGEKP+ CG CG+  A  S L +H+R
Sbjct: 146 HTGEKPFKCDQCDYSATQKSKLSVHMRTHTGEKPYKCGECGFRAALKSDLARHMR 200

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
MGI|MGI:2141255	541	Zfp513 "zinc finger protein 51	0.441	0.153	0.428	1.8e-22
RGD|1310456	541	Zfp513 "zinc finger protein 51	0.441	0.153	0.428	1.8e-22
UNIPROTKB|Q5FWU5	541	Znf513 "Zinc finger protein 51	0.441	0.153	0.428	1.8e-22
UNIPROTKB|Q8N8E2	541	ZNF513 "Zinc finger protein 51	0.441	0.153	0.428	1.8e-22
UNIPROTKB|E1B7S0	542	ZNF513 "Uncharacterized protei	0.441	0.153	0.428	1.8e-22
UNIPROTKB|E2RFE2	543	ZNF513 "Uncharacterized protei	0.441	0.152	0.428	1.9e-22
ZFIN|ZDB-GENE-110913-155	460	si:dkey-40n15.2 "si:dkey-40n15	0.797	0.326	0.335	6.6e-20
ZFIN|ZDB-GENE-050522-528	240	zgc:113030 "zgc:113030" [Danio	0.765	0.6	0.316	9.2e-20
ZFIN|ZDB-GENE-110914-37	345	si:dkey-105i14.2 "si:dkey-105i	0.760	0.414	0.343	1.2e-19
FB|FBgn0031610	346	CG15436 [Drosophila melanogast	0.797	0.433	0.327	1.5e-19

MGI|MGI:2141255 Zfp513 "zinc finger protein 513" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
             + C LC + T    ++  H+ TH+GEKPFRCA C Y++    +L  H R HTGEKP+ C 
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCP 419

Query:   139 MCGYECAQGSQLMQHLRKVHKVDK 162
             +C Y C   + L +H R +H  DK
Sbjct:   420 LCPYACGNLANLKRHGR-IHSGDK 442

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=ISO

RGD|1310456 Zfp513 "zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
             + C LC + T    ++  H+ TH+GEKPFRCA C Y++    +L  H R HTGEKP+ C 
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCP 419

Query:   139 MCGYECAQGSQLMQHLRKVHKVDK 162
             +C Y C   + L +H R +H  DK
Sbjct:   420 LCPYACGNLANLKRHGR-IHSGDK 442

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO;ISS

UNIPROTKB|Q5FWU5 Znf513 "Zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
             + C LC + T    ++  H+ TH+GEKPFRCA C Y++    +L  H R HTGEKP+ C 
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCP 419

Query:   139 MCGYECAQGSQLMQHLRKVHKVDK 162
             +C Y C   + L +H R +H  DK
Sbjct:   420 LCPYACGNLANLKRHGR-IHSGDK 442

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8N8E2 ZNF513 "Zinc finger protein 513" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
             + C LC + T    ++  H+ TH+GEKPFRCA C Y++    +L  H R HTGEKP+ C 
Sbjct:   360 FACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCP 419

Query:   139 MCGYECAQGSQLMQHLRKVHKVDK 162
             +C Y C   + L +H R +H  DK
Sbjct:   420 LCPYACGNLANLKRHGR-IHSGDK 442

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IMP

UNIPROTKB|E1B7S0 ZNF513 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
             + C LC + T    ++  H+ TH+GEKPFRCA C Y++    +L  H R HTGEKP+ C 
Sbjct:   361 FACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCP 420

Query:   139 MCGYECAQGSQLMQHLRKVHKVDK 162
             +C Y C   + L +H R +H  DK
Sbjct:   421 LCPYACGNLANLKRHGR-IHSGDK 443

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RFE2 ZNF513 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
             + C LC + T    ++  H+ TH+GEKPFRCA C Y++    +L  H R HTGEKP+ C 
Sbjct:   362 FACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCP 421

Query:   139 MCGYECAQGSQLMQHLRKVHKVDK 162
             +C Y C   + L +H R +H  DK
Sbjct:   422 LCPYACGNLANLKRHGR-IHSGDK 444

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110913-155 si:dkey-40n15.2 "si:dkey-40n15.2" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 6.6e-20, P = 6.6e-20
 Identities = 55/164 (33%), Positives = 75/164 (45%)

Query:     1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
             + +H+R H  ++ F C  C    +QA+ ++ H++ IH G   F C  C K F      K 
Sbjct:   304 LYKHMRIHTGEKPFTCTQCGKSFRQASSLNKHMR-IHTGEKPFTCTQCGKSFNCSSYLKQ 362

Query:    59 QTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR 118
                 H        +P     + C  C         +  H+  H GEKPF C  C  S  R
Sbjct:   363 HMTIHTGE-----KP-----FTCTQCGKSFRQASSLNIHMRIHTGEKPFTCTQCGKSFNR 412

Query:   119 KTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
              +HLD HMR HTGEKP  C  CG   +Q S L  H+R +H  +K
Sbjct:   413 SSHLDQHMRIHTGEKPFTCTQCGKSFSQSSNLNLHMR-IHTGEK 455

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050522-528 zgc:113030 "zgc:113030" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 50/158 (31%), Positives = 79/158 (50%)

Query:     3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKTQT 60
             RH+  H  ++ F C  C     Q++ ++ H+  IH G   F+C  C K F    TR +  
Sbjct:    35 RHMMIHTGEKPFTCTQCGKSFTQSSSLNKHMM-IHTGERPFICTQCGKSF----TRSSNL 89

Query:    61 LEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT 120
             +EH      M+       + C  C  +     ++  HI  H GEKP RC  C  +  R++
Sbjct:    90 IEH------MLIHTGEKPFTCTQCGRNFRQAAHLNQHIVIHTGEKPHRCDQCGQTFARRS 143

Query:   121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
              L  H+R HT E+P++C +CG  C + S L++H +K+H
Sbjct:   144 FLKFHLRVHTNERPYSCSVCGKSCTRQSSLIKH-QKIH 180

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-37 si:dkey-105i14.2 "si:dkey-105i14.2" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 54/157 (34%), Positives = 71/157 (45%)

Query:     4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKTQTL 61
             H   H  ++ F C  C    +Q++  + H++ IH G   F C  C K F       +Q  
Sbjct:   198 HTMIHTGEKPFTCTQCGKSFRQSSSFNKHMR-IHTGEKPFTCTQCGKSFNC----SSQIN 252

Query:    62 EHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTH 121
             EH        +P     + C  C        Y+  H   H GEKPF C LC  S  R +H
Sbjct:   253 EHMRIHTGK-KP-----FTCTQCGKSFSQSSYLNRHTRIHTGEKPFTCTLCGKSFNRSSH 306

Query:   122 LDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
             L+ HMR HTGEKP  C  CG    Q S L +H+R +H
Sbjct:   307 LNKHMRIHTGEKPFTCTQCGKSFCQTSSLNKHIR-IH 342

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0031610 CG15436 [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/162 (32%), Positives = 75/162 (46%)

Query:     2 LRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC-KQFEVVPTRKTQT 60
             LRH+RTH+  Q F C +C    +    +  H++  +    + C HC K F    T ++  
Sbjct:   142 LRHMRTHMDGQSFPCPYCKRNFRLRVTLKAHMKTHNAAKPYECSHCAKTFAQQSTLQSHE 201

Query:    61 LEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT 120
               H        RP     + C  C+        +R HI TH  E+PF+C+ C  +  RK 
Sbjct:   202 RTHTGE-----RP-----FKCSQCSKTFIKSSDLRRHIRTHGSERPFKCSKCTKTFTRKF 251

Query:   121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
             HLD+H R HTGE+P  C  C    A    L QH R +H  D+
Sbjct:   252 HLDNHFRSHTGERPFKCSHCPKAFAMKQHLKQHSR-LHLPDR 292

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	9e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.004
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	0.004

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 15/21 (71%), Positives = 18/21 (85%)

Query: 164 GGEEEEEEEEEEEEEDNIEQE 184
           GG+ EEEEEEEEEEE+  E+E
Sbjct: 860 GGDSEEEEEEEEEEEEEEEEE 880

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 6/31 (19%)

Query: 160 VDKKGG------EEEEEEEEEEEEEDNIEQE 184
           VD  GG      EEEEEEEEEEEEE+  E+E
Sbjct: 852 VDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 15/19 (78%), Positives = 17/19 (89%)

Query: 166 EEEEEEEEEEEEEDNIEQE 184
           EEEEEEEEEEEEE+  E+E
Sbjct: 868 EEEEEEEEEEEEEEEEEEE 886

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 161 DKKGGEEEEEEEEEEEEEDNIEQE 184
           D +  EEEEEEEEEEEEE+  E+E
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEE 885

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 15/17 (88%), Positives = 16/17 (94%)

Query: 166 EEEEEEEEEEEEEDNIE 182
           EEEEEEEEEEEEE+N E
Sbjct: 876 EEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 15/19 (78%), Positives = 17/19 (89%)

Query: 166 EEEEEEEEEEEEEDNIEQE 184
           EEEEEEEEEEEEE+  E+E
Sbjct: 871 EEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 161 DKKGGEEEEEEEEEEEEEDNIEQE 184
           +++  EEEEEEEEEEEEE+  E+E
Sbjct: 865 EEEEEEEEEEEEEEEEEEEEEEEE 888

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 121 HLDDHMRRHTGEKPHACGMCGYECAQ 146
           +L  HMR HTGEKP+ C +CG   + 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 12/14 (85%), Positives = 14/14 (100%)

Query: 166 EEEEEEEEEEEEED 179
           EEE++EEEEEEEED
Sbjct: 67  EEEKKEEEEEEEED 80

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.92
KOG1074|consensus	958		99.84
KOG1074|consensus	958		99.84
KOG3608|consensus	467		99.84
KOG3623|consensus	1007		99.82
KOG3608|consensus	467		99.69
KOG3576|consensus	267		99.67
KOG3576|consensus	267		99.63
KOG3623|consensus	1007		99.62
PLN03086	567	PRLI-interacting factor K; Provisional	99.26
PLN03086	567	PRLI-interacting factor K; Provisional	99.25
PHA00733	128	hypothetical protein	99.24
PHA00733	128	hypothetical protein	99.02
PHA02768	55	hypothetical protein; Provisional	99.0
PHA02768	55	hypothetical protein; Provisional	98.91
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.81
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.8
PHA00616	44	hypothetical protein	98.65
KOG3993|consensus	500		98.54
KOG3993|consensus	500		98.5
PHA00616	44	hypothetical protein	98.5
PHA00732	79	hypothetical protein	98.37
PHA00732	79	hypothetical protein	98.25
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.15
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.14
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.0
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.0
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.95
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.9
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.79
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.75
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.74
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.68
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.55
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.36
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.32
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.23
smart00355	26	ZnF_C2H2 zinc finger.	97.21
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.17
smart00355	26	ZnF_C2H2 zinc finger.	97.05
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.98
PRK04860	160	hypothetical protein; Provisional	96.92
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.85
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.82
PRK04860	160	hypothetical protein; Provisional	96.67
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.83
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.73
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.44
KOG1146|consensus	1406		95.3
KOG2231|consensus	669		95.17
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.94
KOG1146|consensus	1406		94.8
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.72
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	94.62
COG4049	65	Uncharacterized protein containing archaeal-type C	94.56
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.56
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.53
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	94.38
KOG2785|consensus	390		94.36
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.3
KOG2482|consensus	423		94.06
KOG4173|consensus	253		94.0
COG4049	65	Uncharacterized protein containing archaeal-type C	93.97
KOG2893|consensus	341		93.32
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	92.77
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	91.55
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	91.37
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	91.16
COG5048	467	FOG: Zn-finger [General function prediction only]	90.61
KOG2893|consensus	341		90.3
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	89.9
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.34
COG5048	467	FOG: Zn-finger [General function prediction only]	89.19
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	88.62
COG1592	166	Rubrerythrin [Energy production and conversion]	88.39
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	88.37
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.09
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	87.69
KOG2186|consensus	276		86.99
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	86.82
KOG2482|consensus	423		86.45
PF15135	278	UPF0515: Uncharacterised protein UPF0515	86.26
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.24
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.13
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	85.93
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	85.9
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	85.61
smart00531	147	TFIIE Transcription initiation factor IIE.	85.17
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.78
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.21
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.05
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	83.81
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	83.43
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.3
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	81.31
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	80.64
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	80.64
smart00531	147	TFIIE Transcription initiation factor IIE.	80.52
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	80.38

>KOG2462|consensus

Probab=99.96  E-value=4.9e-30  Score=179.01  Aligned_cols=134  Identities=26%  Similarity=0.514  Sum_probs=120.2

Q ss_pred             CccccCCCcccccCHHHHHHHHHhhhcC--Cc-ccCCCCCC-cccccccccccccccccccccccCCCCceeecCCCCCC
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQQIHMG--VN-FVCVHCKQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYH   87 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~--~~-~~C~~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~   87 (188)
                      ..|+|+.|++.+.+..+|.+|.|.|-..  ++ +.|..|++ +.+...++.|++.            ...++.|.+||+.
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirT------------H~l~c~C~iCGKa  196 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRT------------HTLPCECGICGKA  196 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhc------------cCCCccccccccc
Confidence            4599999999999999999998544432  22 99999999 7777778888774            3568999999999


Q ss_pred             CCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHh
Q psy13443         88 TPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      |...+.|+.|+++|+|+|||.|+.|+++|...++|+.|+++|.+.++|+|..|+++|...+.|.+|.+..
T Consensus       197 FSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  197 FSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             ccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998754

>KOG2462|consensus

Probab=99.92  E-value=1.7e-25  Score=156.32  Aligned_cols=128  Identities=25%  Similarity=0.471  Sum_probs=116.1

Q ss_pred             ccCCCCCC-cccccccccccccccccccccccCCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCch
Q psy13443         42 FVCVHCKQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT  120 (188)
Q Consensus        42 ~~C~~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~  120 (188)
                      |+|+.|++ ......+..|...+|+.       +..+.+.|+.|++.|.+-..|.+|+++|+  .+..|.+||+.|.+.+
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~-------~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPW  201 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSL-------DSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPW  201 (279)
T ss_pred             eeccccccccccccccchhhcccccc-------cccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchH
Confidence            89999999 77777788888877766       44677899999999999999999999998  5799999999999999


Q ss_pred             hHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCcchhhhHHhhhh
Q psy13443        121 HLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEEEEEEEEEEEEE  178 (188)
Q Consensus       121 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~~~~  178 (188)
                      .|+.|+|+|+|+|||.|+.|+++|..+++|..|+++|...+.|.|..+-..+.-.+-.
T Consensus       202 LLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyL  259 (279)
T KOG2462|consen  202 LLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYL  259 (279)
T ss_pred             HhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988776655543

>KOG1074|consensus

Probab=99.84  E-value=3.9e-22  Score=157.06  Aligned_cols=85  Identities=26%  Similarity=0.523  Sum_probs=77.9

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCC----CccCC---CCcccccCcHH
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK----PHACG---MCGYECAQGSQ  149 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~----~~~C~---~C~~~f~~~~~  149 (188)
                      .|.+|-+|.++...++.|+.|.++|+|++||+|.+||++|.++.+|+.|+.+|....    ++.|+   +|.+.|...-.
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            468899999999999999999999999999999999999999999999999987543    38899   99999999999


Q ss_pred             HHHHHHHhcCCC
Q psy13443        150 LMQHLRKVHKVD  161 (188)
Q Consensus       150 l~~H~~~~h~~~  161 (188)
                      |..|++.|.++.
T Consensus       684 lpQhIriH~~~~  695 (958)
T KOG1074|consen  684 LPQHIRIHLGGQ  695 (958)
T ss_pred             ccceEEeecCCC
Confidence            999999988543

>KOG1074|consensus

Probab=99.84  E-value=1.5e-21  Score=153.81  Aligned_cols=58  Identities=28%  Similarity=0.485  Sum_probs=54.4

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCC
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKG  164 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  164 (188)
                      ..|.+|++.|...+.|+.|+++|++++||.|.+|++.|.+...|+.|+.+|+...++.
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~s  937 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPS  937 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCc
Confidence            6899999999999999999999999999999999999999999999999998766653

>KOG3608|consensus

Probab=99.84  E-value=9.3e-22  Score=141.70  Aligned_cols=161  Identities=22%  Similarity=0.450  Sum_probs=132.5

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcC--CcccCCCCCC-ccccccccccccc-----cccccccccc
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMG--VNFVCVHCKQ-FEVVPTRKTQTLE-----HCATCVDMVR   72 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--~~~~C~~C~~-~~~~~~~~~~~~~-----~c~~c~~~~~   72 (188)
                      |+.|+++|++++...|+.||.-|.++..|..|+++....  .+|+|..|.+ |.....+..|...     .|+.|..+..
T Consensus       195 LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~  274 (467)
T KOG3608|consen  195 LREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCS  274 (467)
T ss_pred             HHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCC
Confidence            578999999999999999999999999999998654432  3499999988 7776655555544     6777755544


Q ss_pred             C------------CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhhc-C--CCCc
Q psy13443         73 P------------DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHT-G--EKPH  135 (188)
Q Consensus        73 ~------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~-~--~~~~  135 (188)
                      .            ..++||+|..|++.|...+.|..|+.+|. +-.|.|..  |..++.+..++..|++.++ |  ..+|
T Consensus       275 ~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y  353 (467)
T KOG3608|consen  275 SASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILY  353 (467)
T ss_pred             ChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCce
Confidence            3            66889999999999999999999999888 55789977  9999999999999988765 4  3459


Q ss_pred             cCCCCcccccCcHHHHHHHHHhcCCCC
Q psy13443        136 ACGMCGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus       136 ~C~~C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      .|-.|++.|++..+|..|+...|+-+.
T Consensus       354 ~CH~Cdr~ft~G~~L~~HL~kkH~f~~  380 (467)
T KOG3608|consen  354 ACHCCDRFFTSGKSLSAHLMKKHGFRL  380 (467)
T ss_pred             eeecchhhhccchhHHHHHHHhhcccC
Confidence            999999999999999999998887554

>KOG3623|consensus

Probab=99.82  E-value=3.2e-21  Score=150.09  Aligned_cols=82  Identities=28%  Similarity=0.640  Sum_probs=77.4

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH  153 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  153 (188)
                      +.+..|.|.+|+++|.-.+.|.+|.--|+|++||.|.+|.++|..+-.|..|+|.|.|++||+|+.|+++|...+....|
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQH  969 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQH  969 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhh
Confidence            44456999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q psy13443        154 LR  155 (188)
Q Consensus       154 ~~  155 (188)
                      +.
T Consensus       970 MN  971 (1007)
T KOG3623|consen  970 MN  971 (1007)
T ss_pred             hc
Confidence            84

>KOG3608|consensus

Probab=99.69  E-value=1.2e-17  Score=120.69  Aligned_cols=156  Identities=22%  Similarity=0.451  Sum_probs=120.6

Q ss_pred             ccc--CCCcccccCHHHHHHHHHhhhcCCcccCCCCCC-ccccccccccccc---------ccccccccccC--------
Q psy13443         14 FEC--DFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ-FEVVPTRKTQTLE---------HCATCVDMVRP--------   73 (188)
Q Consensus        14 ~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~-~~~~~~~~~~~~~---------~c~~c~~~~~~--------   73 (188)
                      +.|  ..|-+.|.++..|..|++.+.+++...|+.|+. |.....+..|.+.         .|..|.+.|..        
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv  257 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHV  257 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHH
Confidence            456  468899999999999995554555599999999 6665555555443         68888877776        


Q ss_pred             -CCCceeecCCCCCCCCCHHHHHHHHH-hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCC--CcccccCcHH
Q psy13443         74 -DASYTYMCYLCNYHTPTRKYMRTHID-THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQ  149 (188)
Q Consensus        74 -~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~  149 (188)
                       .....|+|+.|+.+....++|..|++ .|...|||+|..|...+.+.+.|..|...|. +..|+|..  |.+.|.+..+
T Consensus       258 ~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q  336 (467)
T KOG3608|consen  258 VRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQ  336 (467)
T ss_pred             HHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHH
Confidence             33345888888888888888888887 5667888888888888888888888888886 56688887  8888888888


Q ss_pred             HHHHHHHhc-C--CCCCCCCcchh
Q psy13443        150 LMQHLRKVH-K--VDKKGGEEEEE  170 (188)
Q Consensus       150 l~~H~~~~h-~--~~~~~~~~~~~  170 (188)
                      |.+|++.+| +  .-+|+|-.++.
T Consensus       337 ~~~H~~evhEg~np~~Y~CH~Cdr  360 (467)
T KOG3608|consen  337 MRRHFLEVHEGNNPILYACHCCDR  360 (467)
T ss_pred             HHHHHHHhccCCCCCceeeecchh
Confidence            888888877 3  33467766654

>KOG3576|consensus

Probab=99.67  E-value=2.8e-17  Score=110.39  Aligned_cols=115  Identities=23%  Similarity=0.528  Sum_probs=88.6

Q ss_pred             CCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCCCC
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPT   90 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~   90 (188)
                      ...|.|.+|++.|....-|.+|+ ..|..                                    .+.+.|..||++|..
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~-kch~~------------------------------------vkr~lct~cgkgfnd  157 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHL-KCHSD------------------------------------VKRHLCTFCGKGFND  157 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHh-hhccH------------------------------------HHHHHHhhccCcccc
Confidence            34578888888888888888887 44432                                    234567778888888


Q ss_pred             HHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC-----------CCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443         91 RKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG-----------EKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus        91 ~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ...|..|+++|+|.+||+|..|+++|...-.|..|++.-+|           .+-|.|..||.+-.....+..|+..+|+
T Consensus       158 tfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  158 TFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             hhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            88888888888888888888888888888888888764332           4558888898888888888888888886


Q ss_pred             CCC
Q psy13443        160 VDK  162 (188)
Q Consensus       160 ~~~  162 (188)
                      ..+
T Consensus       238 ~Sp  240 (267)
T KOG3576|consen  238 FSP  240 (267)
T ss_pred             CCH
Confidence            554

>KOG3576|consensus

Probab=99.63  E-value=5.2e-17  Score=109.09  Aligned_cols=85  Identities=28%  Similarity=0.594  Sum_probs=81.5

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHH
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      ...|.|.+|++.|....-|..|++-|...+.+-|..||+.|...-.|.+|+++|+|-+||+|..|+++|++.-.|..|++
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q psy13443        156 KVHKV  160 (188)
Q Consensus       156 ~~h~~  160 (188)
                      ..|+.
T Consensus       195 kvhgv  199 (267)
T KOG3576|consen  195 KVHGV  199 (267)
T ss_pred             HHcCc
Confidence            99973

>KOG3623|consensus

Probab=99.62  E-value=1.4e-16  Score=124.65  Aligned_cols=111  Identities=26%  Similarity=0.620  Sum_probs=92.2

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCCCCHH
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRK   92 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~~   92 (188)
                      ...|+.|.+.+.....|+.|+...|...                                   +..|.|.+|.++|..+.
T Consensus       210 lltcpycdrgykrltslkeHikyrhekn-----------------------------------e~nfsC~lCsytFAyRt  254 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKN-----------------------------------EPNFSCMLCSYTFAYRT  254 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhC-----------------------------------CCCCcchhhhhhhhhHH
Confidence            4689999999999999999997766422                                   33467888888999999


Q ss_pred             HHHHHHHhcCCC-------------CceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443         93 YMRTHIDTHNGE-------------KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus        93 ~l~~H~~~h~~~-------------~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      .|.+|+.+|...             +.|+|..|+++|..+-.|..|+|+|.|++||.|+.|+++|...+.+..|+....
T Consensus       255 QLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKK  333 (1007)
T KOG3623|consen  255 QLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKK  333 (1007)
T ss_pred             HHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccc
Confidence            999998877532             458999999999999999999999999999999999999999999888885443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.26  E-value=1.3e-11  Score=96.76  Aligned_cols=128  Identities=18%  Similarity=0.301  Sum_probs=80.4

Q ss_pred             ccCCCcccccCHHHHHHHHHhhhcCCcccCCC--CCCcccccccccccccccccccccccCCCCceeecCCCCCCCCCHH
Q psy13443         15 ECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH--CKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRK   92 (188)
Q Consensus        15 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~~   92 (188)
                      .|+.|..... ..+|..|. .......-.|+.  |+.......+                   ++.+.|+.|++.|. ..
T Consensus       409 ~C~NC~~~i~-l~~l~lHe-~~C~r~~V~Cp~~~Cg~v~~r~el-------------------~~H~~C~~Cgk~f~-~s  466 (567)
T PLN03086        409 ECRNCKHYIP-SRSIALHE-AYCSRHNVVCPHDGCGIVLRVEEA-------------------KNHVHCEKCGQAFQ-QG  466 (567)
T ss_pred             ECCCCCCccc-hhHHHHHH-hhCCCcceeCCcccccceeecccc-------------------ccCccCCCCCCccc-hH
Confidence            5777776543 44555675 344444456663  6662222222                   23356777777775 56


Q ss_pred             HHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccC----------cHHHHHHHHHhcCCCC
Q psy13443         93 YMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQ----------GSQLMQHLRKVHKVDK  162 (188)
Q Consensus        93 ~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----------~~~l~~H~~~~h~~~~  162 (188)
                      .|..|+..++  +++.|+ |+..+ ....|..|+.+|.+.+++.|..|+..|..          ...|..|... .+.++
T Consensus       467 ~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt  541 (567)
T PLN03086        467 EMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRT  541 (567)
T ss_pred             HHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh-cCCcc
Confidence            6777777764  567777 77644 45677777777777777788888777741          2467777666 37777


Q ss_pred             CCCCcch
Q psy13443        163 KGGEEEE  169 (188)
Q Consensus       163 ~~~~~~~  169 (188)
                      +.|..|.
T Consensus       542 ~~C~~Cg  548 (567)
T PLN03086        542 APCDSCG  548 (567)
T ss_pred             eEccccC
Confidence            7776654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.25  E-value=4.3e-11  Score=93.94  Aligned_cols=120  Identities=18%  Similarity=0.356  Sum_probs=92.0

Q ss_pred             cccCC--CcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCCCCH
Q psy13443         14 FECDF--CPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTR   91 (188)
Q Consensus        14 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~   91 (188)
                      -.|+.  |+..|. +..+..|         +.|+.|++......+..|....            ..++.|+ |++.+ .+
T Consensus       434 V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~~s~LekH~~~~------------Hkpv~Cp-Cg~~~-~R  489 (567)
T PLN03086        434 VVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQQGEMEKHMKVF------------HEPLQCP-CGVVL-EK  489 (567)
T ss_pred             eeCCcccccceee-ccccccC---------ccCCCCCCccchHHHHHHHHhc------------CCCccCC-CCCCc-ch
Confidence            35874  888873 3334444         5899999833445566665431            2578999 99755 67


Q ss_pred             HHHHHHHHhcCCCCceecccCccccC----------CchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443         92 KYMRTHIDTHNGEKPFRCALCAYSAR----------RKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus        92 ~~l~~H~~~h~~~~~~~C~~C~~~~~----------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ..|..|+.+|...+++.|+.|+..+.          ....|..|...+ |.+++.|..|++.+.. ..|..|+-..|.
T Consensus       490 ~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~  565 (567)
T PLN03086        490 EQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVML-KEMDIHQIAVHQ  565 (567)
T ss_pred             hHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeee-hhHHHHHHHhhc
Confidence            89999999999999999999999985          235899998885 8999999999999876 478899887774

>PHA00733 hypothetical protein

Probab=99.24  E-value=6.4e-12  Score=81.14  Aligned_cols=83  Identities=19%  Similarity=0.409  Sum_probs=67.6

Q ss_pred             CceeecCCCCCCCCCHHHHHHH--HH---hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHH
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTH--ID---THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL  150 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  150 (188)
                      .+++.|.+|.+.|..+..|..+  +.   .+.+.++|.|+.|++.|.+...|..|++.+  ..++.|+.|++.|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            4567788888777777666655  21   333578999999999999999999999976  4579999999999999999


Q ss_pred             HHHHHHhcCC
Q psy13443        151 MQHLRKVHKV  160 (188)
Q Consensus       151 ~~H~~~~h~~  160 (188)
                      ..|+...|+.
T Consensus       116 ~~H~~~~h~~  125 (128)
T PHA00733        116 LDHVCKKHNI  125 (128)
T ss_pred             HHHHHHhcCc
Confidence            9999998863

>PHA00733 hypothetical protein

Probab=99.02  E-value=4.9e-10  Score=72.43  Aligned_cols=56  Identities=21%  Similarity=0.412  Sum_probs=49.6

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      .+..+|.|+.|++.|.+...|..|++.+.  .+|.|+.|++.|.....|..|+...++
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTE--HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcCC--cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            34678999999999999999999999773  569999999999999999999987654

>PHA02768 hypothetical protein; Provisional

Probab=99.00  E-value=1.8e-10  Score=61.92  Aligned_cols=39  Identities=15%  Similarity=0.418  Sum_probs=19.0

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCc
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQG  147 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  147 (188)
                      |.|+.||+.|.....|..|+++|.  +|++|..|++.|...
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~   44 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRT   44 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccc
Confidence            445555555555555555555544  344555555544433

>PHA02768 hypothetical protein; Provisional

Probab=98.91  E-value=7.5e-10  Score=59.49  Aligned_cols=43  Identities=28%  Similarity=0.453  Sum_probs=39.4

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhH
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHL  122 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l  122 (188)
                      .|.|+.||+.|...+.|..|+++|+  +++.|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            4899999999999999999999999  689999999999877655

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.81  E-value=1.6e-09  Score=49.89  Aligned_cols=25  Identities=28%  Similarity=0.756  Sum_probs=22.7

Q ss_pred             ChhHHhhccCCCccccCCCcccccC
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQ   25 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~   25 (188)
                      |..|+++|++++||.|+.|+++|..
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            5789999999999999999999863

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.80  E-value=3.5e-09  Score=48.74  Aligned_cols=24  Identities=54%  Similarity=0.989  Sum_probs=15.4

Q ss_pred             HHHHHHhhcCCCCccCCCCccccc
Q psy13443        122 LDDHMRRHTGEKPHACGMCGYECA  145 (188)
Q Consensus       122 l~~H~~~h~~~~~~~C~~C~~~f~  145 (188)
                      |..|+++|++++||.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            556666666666666666666664

...

>PHA00616 hypothetical protein

Probab=98.65  E-value=1.4e-08  Score=51.98  Aligned_cols=33  Identities=30%  Similarity=0.397  Sum_probs=24.7

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      ||+|+.||+.|...+.|..|++.+|+.+++.++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            577777777777777777777777777776654

>KOG3993|consensus

Probab=98.54  E-value=2.5e-08  Score=74.63  Aligned_cols=86  Identities=19%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCC----------------------------------------------ceec
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEK----------------------------------------------PFRC  109 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----------------------------------------------~~~C  109 (188)
                      +.-|.|..|++.|+....|..|+.+|...-                                              ...+
T Consensus       354 ~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~p  433 (500)
T KOG3993|consen  354 SGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELP  433 (500)
T ss_pred             CceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCC
Confidence            346999999999999999999987765320                                              0123


Q ss_pred             ccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        110 ALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       110 ~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +.++..+.++..--.+.+.-.....|.|.+|.-+|.+...|.+|+...|..+
T Consensus       434 p~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  434 PYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             CCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChHH
Confidence            3444444333332222222222344889999999999999999998888543

>KOG3993|consensus

Probab=98.50  E-value=1.8e-08  Score=75.40  Aligned_cols=86  Identities=20%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             eecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC---------------------------
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG---------------------------  131 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~---------------------------  131 (188)
                      |.|.+|...|.....|.+|.-.--...-|+|+.|++.|+..++|..|.|.|..                           
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            78888888888888888886321111238888888888888888888887741                           


Q ss_pred             ------CCCccCCCCcccccCcHHHHHHHHHhcCCCCCC
Q psy13443        132 ------EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKG  164 (188)
Q Consensus       132 ------~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  164 (188)
                            +.-|.|.+|++.|.....|.+|+-+|+.....+
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence                  123899999999999999999999998654433

>PHA00616 hypothetical protein

Probab=98.50  E-value=4.3e-08  Score=50.19  Aligned_cols=33  Identities=15%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCceecc
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCA  110 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  110 (188)
                      ||+|+.||+.|...+.|..|++.|++++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            356666666666666666666666666666554

>PHA00732 hypothetical protein

Probab=98.37  E-value=2.4e-07  Score=54.49  Aligned_cols=46  Identities=26%  Similarity=0.604  Sum_probs=34.1

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHh-cCCCCceecccCccccCCchhHHHHHHhh
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDT-HNGEKPFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      ||.|..|++.|.+...|..|++. |.   ++.|+.|++.|.   .+..|..++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            47788888888888888888874 44   357888888887   356676554

>PHA00732 hypothetical protein

Probab=98.25  E-value=1.1e-06  Score=51.81  Aligned_cols=47  Identities=30%  Similarity=0.627  Sum_probs=39.3

Q ss_pred             ceecccCccccCCchhHHHHHHh-hcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRR-HTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      ||.|..|++.|.+...|..|++. |.   ++.|+.|++.|.   .|..|.+++-
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            58899999999999999999985 54   368999999997   4788885543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.15  E-value=4.9e-06  Score=45.47  Aligned_cols=49  Identities=27%  Similarity=0.622  Sum_probs=20.9

Q ss_pred             eecccCccccCCchhHHHHHHh-hcC-CCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        107 FRCALCAYSARRKTHLDDHMRR-HTG-EKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |.||.|++ ..+...|..|... |.. .+.+.|++|...+.  ..|..|+...|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            44555554 2333444444433 222 12345555554322  24555555444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.14  E-value=6e-06  Score=45.11  Aligned_cols=50  Identities=18%  Similarity=0.472  Sum_probs=38.7

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHh-cCC-CCceecccCccccCCchhHHHHHHhhc
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDT-HNG-EKPFRCALCAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~~~~~~~l~~H~~~h~  130 (188)
                      .|.|+.|++. .+...|..|... |.. .+.+.||+|...+.  .+|..|+...+
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            4789999994 557789999774 443 35799999998655  48899988765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.00  E-value=4.1e-06  Score=37.18  Aligned_cols=22  Identities=32%  Similarity=0.736  Sum_probs=15.2

Q ss_pred             ccCCCCcccccCcHHHHHHHHH
Q psy13443        135 HACGMCGYECAQGSQLMQHLRK  156 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~  156 (188)
                      |.|+.|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4567777777777777777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.00  E-value=5e-06  Score=37.17  Aligned_cols=24  Identities=38%  Similarity=0.729  Sum_probs=17.3

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhc
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |.|++|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            568888888888888888887765

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=5.4e-06  Score=36.80  Aligned_cols=22  Identities=18%  Similarity=0.631  Sum_probs=12.5

Q ss_pred             eecCCCCCCCCCHHHHHHHHHh
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDT  100 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~  100 (188)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4555555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.90  E-value=7.7e-06  Score=50.64  Aligned_cols=73  Identities=15%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHh
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      +|..|+..|.+...|..|+...++-..   + ....+.....+..+.+... ...+.|..|+..|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccc---c-ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            489999999999999999975554321   1 1112223334444443322 23689999999999999999999875

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.79  E-value=5.9e-06  Score=60.10  Aligned_cols=52  Identities=25%  Similarity=0.547  Sum_probs=42.2

Q ss_pred             CCceeccc--CccccCCchhHHHHHHhhc-------------------CCCCccCCCCcccccCcHHHHHHHH
Q psy13443        104 EKPFRCAL--CAYSARRKTHLDDHMRRHT-------------------GEKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       104 ~~~~~C~~--C~~~~~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      +|||.|++  |.+.|.....|..|+..-+                   ..+||+|.+|++.++.-..|+.|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            37888877  8888888888888876422                   3589999999999999999998864

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.75  E-value=2.8e-05  Score=34.61  Aligned_cols=24  Identities=21%  Similarity=0.677  Sum_probs=19.5

Q ss_pred             cccCCCcccccCHHHHHHHHHhhh
Q psy13443         14 FECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      |.|++|++.|.+...|..|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999996553

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.74  E-value=1.3e-05  Score=37.07  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=14.1

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhc
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      ||.|..|++.|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            3555556666666666666655443

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.68  E-value=2.8e-05  Score=35.90  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhh
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      ||.|..|++.|.+...|..|++.++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999985443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.55  E-value=6.8e-05  Score=46.31  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=16.3

Q ss_pred             ccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCCCCHHHH
Q psy13443         15 ECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYM   94 (188)
Q Consensus        15 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~~~l   94 (188)
                      .|..|+..|.+...|..|+...|+-..   +....+.....+......           .....+.|..|++.|.+...|
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---~~~~~l~~~~~~~~~~~~-----------~~~~~~~C~~C~~~f~s~~~l   66 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---PDQKYLVDPNRLLNYLRK-----------KVKESFRCPYCNKTFRSREAL   66 (100)
T ss_dssp             --------------------------------------------------------------SSEEBSSSS-EESSHHHH
T ss_pred             Ccccccccccccccccccccccccccc---cccccccccccccccccc-----------ccCCCCCCCccCCCCcCHHHH
Confidence            489999999999999999977775321   100011111111111100           111246677777777777777


Q ss_pred             HHHHHhc
Q psy13443         95 RTHIDTH  101 (188)
Q Consensus        95 ~~H~~~h  101 (188)
                      ..|++.+
T Consensus        67 ~~Hm~~~   73 (100)
T PF12756_consen   67 QEHMRSK   73 (100)
T ss_dssp             HHHHHHT
T ss_pred             HHHHcCc
Confidence            7777654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.36  E-value=0.00021  Score=37.54  Aligned_cols=31  Identities=32%  Similarity=0.558  Sum_probs=17.6

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhcCCCC
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      +.|-.|++|+..+.+..+|.+|++..|+.+|
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4556777777777777777777777776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.32  E-value=0.00019  Score=32.05  Aligned_cols=24  Identities=33%  Similarity=0.711  Sum_probs=16.2

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |+|+.|++... ...|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            56777877776 7778888777764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.23  E-value=0.0001  Score=53.82  Aligned_cols=52  Identities=23%  Similarity=0.537  Sum_probs=43.7

Q ss_pred             CceeecCC--CCCCCCCHHHHHHHHHhcC-------------------CCCceecccCccccCCchhHHHHHH
Q psy13443         76 SYTYMCYL--CNYHTPTRKYMRTHIDTHN-------------------GEKPFRCALCAYSARRKTHLDDHMR  127 (188)
Q Consensus        76 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~~~~~~~l~~H~~  127 (188)
                      .+||.|++  |++.+.....|+-|+.--+                   ..|||+|++|++.|.....|..|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            48999976  9999999999999985322                   1279999999999999999988864

>smart00355 ZnF_C2H2 zinc finger

Probab=97.21  E-value=0.00036  Score=31.40  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=19.2

Q ss_pred             ccCCCCcccccCcHHHHHHHHHh
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      |.|..|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57888999999999999998744

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.17  E-value=0.00048  Score=36.23  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             HhhccC-CCccccCCCcccccCHHHHHHHHHhhhcCCc
Q psy13443          5 VRTHLA-KQQFECDFCPYGAKQAADVHNHVQQIHMGVN   41 (188)
Q Consensus         5 ~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   41 (188)
                      .+++.. +.|-.|++|+..+....+|.+|+...|..+|
T Consensus        15 ~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   15 PKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             HHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            333433 5689999999999999999999988887654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.05  E-value=0.00067  Score=30.45  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=14.0

Q ss_pred             ecCCCCCCCCCHHHHHHHHHhc
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTH  101 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h  101 (188)
                      .|..|++.|.....|..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4666666666666666666644

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.98  E-value=0.00086  Score=29.83  Aligned_cols=24  Identities=21%  Similarity=0.772  Sum_probs=19.0

Q ss_pred             cccCCCcccccCHHHHHHHHHhhhc
Q psy13443         14 FECDFCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      |.|+.|+.... ...|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999999988 9999999977663

>PRK04860 hypothetical protein; Provisional

Probab=96.92  E-value=0.00078  Score=45.33  Aligned_cols=37  Identities=30%  Similarity=0.617  Sum_probs=22.3

Q ss_pred             ceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccC
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQ  146 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  146 (188)
                      +|.|. |+.   ....+..|.+++.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            46665 655   44555666666666666666666665543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.85  E-value=0.00083  Score=30.16  Aligned_cols=21  Identities=24%  Similarity=0.651  Sum_probs=19.6

Q ss_pred             cccCCCcccccCHHHHHHHHH
Q psy13443         14 FECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      |.|.+|++.|.+...|..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            689999999999999999984

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.82  E-value=0.00072  Score=30.38  Aligned_cols=21  Identities=24%  Similarity=0.705  Sum_probs=12.2

Q ss_pred             eecCCCCCCCCCHHHHHHHHH
Q psy13443         79 YMCYLCNYHTPTRKYMRTHID   99 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~   99 (188)
                      |.|.+|+..|.+...|.+|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            345666666666666666654

>PRK04860 hypothetical protein; Provisional

Probab=96.67  E-value=0.0014  Score=44.04  Aligned_cols=41  Identities=27%  Similarity=0.563  Sum_probs=35.1

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCch
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKT  120 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~  120 (188)
                      ..+|.|. |+.   ....+..|.++++++++|.|..|+..|....
T Consensus       117 ~~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        117 TFPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            3579998 997   6678899999999999999999999887543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.83  E-value=0.002  Score=29.59  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=14.0

Q ss_pred             ccCCCCcccccCcHHHHHHHH
Q psy13443        135 HACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            456677777777777766654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.73  E-value=0.0033  Score=28.80  Aligned_cols=22  Identities=14%  Similarity=0.561  Sum_probs=15.1

Q ss_pred             eecCCCCCCCCCHHHHHHHHHh
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDT  100 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~  100 (188)
                      |.|..|++.|.+...+.+|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5577777777777777776653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.44  E-value=0.017  Score=25.96  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=14.5

Q ss_pred             ccCCCCcccccCcHHHHHHHHH
Q psy13443        135 HACGMCGYECAQGSQLMQHLRK  156 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~  156 (188)
                      ..|+.|++.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4677788887 55677777653

>KOG1146|consensus

Probab=95.30  E-value=0.0033  Score=54.47  Aligned_cols=81  Identities=23%  Similarity=0.374  Sum_probs=53.6

Q ss_pred             ccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCC
Q psy13443          8 HLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYH   87 (188)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~   87 (188)
                      ++..+.|+|+.|+..|+....|..|++..|.+-.-  ..|..      ...    ++..-+..+...+-++|.|..|..+
T Consensus       460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~------gq~----~~~~arg~~~~~~~~p~~C~~C~~s  527 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKA------GQN----HPRLARGEVYRCPGKPYPCRACNYS  527 (1406)
T ss_pred             ecccccccCCccchhhhhHHHhhhcccccccccch--hHhHh------ccc----cccccccccccCCCCcccceeeeee
Confidence            45557899999999999999999999766643221  22211      000    1111111222245578999999999


Q ss_pred             CCCHHHHHHHHHh
Q psy13443         88 TPTRKYMRTHIDT  100 (188)
Q Consensus        88 f~~~~~l~~H~~~  100 (188)
                      +.....|..|+.+
T Consensus       528 tttng~LsihlqS  540 (1406)
T KOG1146|consen  528 TTTNGNLSIHLQS  540 (1406)
T ss_pred             eecchHHHHHHHH
Confidence            9999999999863

>KOG2231|consensus

Probab=95.17  E-value=0.044  Score=44.93  Aligned_cols=103  Identities=18%  Similarity=0.335  Sum_probs=61.9

Q ss_pred             cCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC----ccc------ccccccccccccccccccccCCCCceeecCCCC
Q psy13443         16 CDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ----FEV------VPTRKTQTLEHCATCVDMVRPDASYTYMCYLCN   85 (188)
Q Consensus        16 C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~----~~~------~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~   85 (188)
                      |.+| ..|.....|..|+...|..  +.|..|-.    |+.      ...++.|+..-++ +...+.  +  --.|..|.
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~-d~~s~r--G--hp~C~~C~  189 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP-DDESCR--G--HPLCKFCH  189 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhhhh--hccccccccceeeeeeeehehHHHHHHHHhcCCC-cccccc--C--Cccchhhh
Confidence            4444 4445889999999666643  56777732    322      2223333332222 111111  1  24688899


Q ss_pred             CCCCCHHHHHHHHHhcCCCCceecccC------ccccCCchhHHHHHHhhc
Q psy13443         86 YHTPTRKYMRTHIDTHNGEKPFRCALC------AYSARRKTHLDDHMRRHT  130 (188)
Q Consensus        86 ~~f~~~~~l~~H~~~h~~~~~~~C~~C------~~~~~~~~~l~~H~~~h~  130 (188)
                      ..|.....|..|++.++    |.|..|      +..|.....|..|.+.++
T Consensus       190 ~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  190 ERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             hhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            99999999999988765    555555      345677788888877654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.94  E-value=0.026  Score=27.38  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             CccccCCCcccccCHHHHHHHHH
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      .+|.|..|+..|.+...+..|++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHC
Confidence            36899999999999999999984

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146|consensus

Probab=94.80  E-value=0.011  Score=51.31  Aligned_cols=56  Identities=29%  Similarity=0.564  Sum_probs=43.6

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhc-------------------------CCCCccCCCCcccccCcHHHHHHHH
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHT-------------------------GEKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~-------------------------~~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      +...+.+.|+.|+..|.....|..|+|..+                         +.++|.|..|...+.....|..|+.
T Consensus       460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence            334466778888888888777777777621                         3467999999999999999999986


Q ss_pred             H
Q psy13443        156 K  156 (188)
Q Consensus       156 ~  156 (188)
                      .
T Consensus       540 S  540 (1406)
T KOG1146|consen  540 S  540 (1406)
T ss_pred             H
Confidence            4

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.72  E-value=0.095  Score=39.35  Aligned_cols=134  Identities=19%  Similarity=0.363  Sum_probs=83.0

Q ss_pred             ccccCC--CcccccCHHHHHHHHHhhhcCCcccCCCCC--C--ccc------ccccccccccccccccccccCCCCceee
Q psy13443         13 QFECDF--CPYGAKQAADVHNHVQQIHMGVNFVCVHCK--Q--FEV------VPTRKTQTLEHCATCVDMVRPDASYTYM   80 (188)
Q Consensus        13 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~--~--~~~------~~~~~~~~~~~c~~c~~~~~~~~~~~~~   80 (188)
                      .|.|+.  |..+...+..|+.|....|.  .+.|..|-  +  |..      ...++.|...-  .-+.+|    +.--.
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G--~~e~GF----KGHP~  222 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGG--LEEEGF----KGHPL  222 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCC--ccccCc----CCCch
Confidence            367764  77777778899999865554  36788882  2  332      23333333210  000011    11236


Q ss_pred             cCCCCCCCCCHHHHHHHHHhcCCCCceecccCc----cccCCchhHHHHHHhhcCCCCccCCC--Cc----ccccCcHHH
Q psy13443         81 CYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCA----YSARRKTHLDDHMRRHTGEKPHACGM--CG----YECAQGSQL  150 (188)
Q Consensus        81 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~----~~~~~~~~l~~H~~~h~~~~~~~C~~--C~----~~f~~~~~l  150 (188)
                      |..|...|.+...|..|.+.-+. +-|.|..-+    .-|.+..+|..|.+.-    -|.|..  |.    ..|.....|
T Consensus       223 C~FC~~~FYdDDEL~~HcR~~HE-~ChICD~v~p~~~QYFK~Y~~Le~HF~~~----hy~ct~qtc~~~k~~vf~~~~el  297 (493)
T COG5236         223 CIFCKIYFYDDDELRRHCRLRHE-ACHICDMVGPIRYQYFKSYEDLEAHFRNA----HYCCTFQTCRVGKCYVFPYHTEL  297 (493)
T ss_pred             hhhccceecChHHHHHHHHhhhh-hhhhhhccCccchhhhhCHHHHHHHhhcC----ceEEEEEEEecCcEEEeccHHHH
Confidence            99999999999999999985442 234443322    3367777888776542    356543  32    568899999


Q ss_pred             HHHHHHhcC
Q psy13443        151 MQHLRKVHK  159 (188)
Q Consensus       151 ~~H~~~~h~  159 (188)
                      ..|+-..|+
T Consensus       298 ~~h~~~~h~  306 (493)
T COG5236         298 LEHLTRFHK  306 (493)
T ss_pred             HHHHHHHhh
Confidence            999988885

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=94.62  E-value=0.088  Score=33.11  Aligned_cols=83  Identities=18%  Similarity=0.300  Sum_probs=47.0

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCC-ceecccCccccCCchhH-HH--HHHh-hcC---------CCCccC----
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEK-PFRCALCAYSARRKTHL-DD--HMRR-HTG---------EKPHAC----  137 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~~~~~~~l-~~--H~~~-h~~---------~~~~~C----  137 (188)
                      -+...|..|..+... +.+..|++..+... ...-..-...+.....+ ..  .... ..+         -..|.|    
T Consensus         9 ~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~   87 (109)
T PF12013_consen    9 YRVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDP   87 (109)
T ss_pred             CCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCC
Confidence            345789999988776 88999998443221 11000000000000000 00  0000 000         122899    


Q ss_pred             CCCcccccCcHHHHHHHHHhcC
Q psy13443        138 GMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       138 ~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ..|++.+.+...|.+|++.+|+
T Consensus        88 ~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   88 PHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCCcEeccHHHHHHHHHHhcC
Confidence            9999999999999999999885

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.56  E-value=0.016  Score=31.04  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             HhhccCCCccccCCCcccccCHHHHHHHHHhhhc
Q psy13443          5 VRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      +++.-|+..+.|+-|+..|.+..+..+|....|+
T Consensus         9 v~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049           9 VRDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             eeccCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3455678889999999999999999999987775

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.56  E-value=0.031  Score=26.94  Aligned_cols=24  Identities=29%  Similarity=0.919  Sum_probs=13.0

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCccCCCCcc
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGY  142 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  142 (188)
                      |.|.+||..+....            .++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            45666665554322            4556666654

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.53  E-value=0.078  Score=33.29  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=14.5

Q ss_pred             ceecccCccccCCchhHHHHHHhh
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      .|+|+.|...|-..=++-.|..+|
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhcc
Confidence            466666666666655555555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=94.38  E-value=0.062  Score=29.34  Aligned_cols=46  Identities=20%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             cccccccc-cCCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCcc
Q psy13443         64 CATCVDMV-RPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAY  114 (188)
Q Consensus        64 c~~c~~~~-~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  114 (188)
                      |..|+..+ .......|.|+.||.....+...-   +.  ...+|+|+.||+
T Consensus        12 CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~C---Rk--~g~~Y~Cp~CGF   58 (61)
T COG2888          12 CTSCGREIAPGETAVKFPCPNCGEVEIYRCAKC---RK--LGNPYRCPKCGF   58 (61)
T ss_pred             eccCCCEeccCCceeEeeCCCCCceeeehhhhH---HH--cCCceECCCcCc
Confidence            33444444 223344577888886554433211   11  124677777774

>KOG2785|consensus

Probab=94.36  E-value=0.17  Score=38.54  Aligned_cols=57  Identities=18%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             eecccCccccCCchhHHHHHHhhcCC-----------------------CCccCCCCc---ccccCcHHHHHHHHH-hcC
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGE-----------------------KPHACGMCG---YECAQGSQLMQHLRK-VHK  159 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~-~h~  159 (188)
                      -.|..|+..+.+......||..++|-                       .-+.|-.|.   +.|.+-...+.|+.. -|.
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~HC  246 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKGHC  246 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhccCc
Confidence            45788999999999999999877641                       226788888   999999999999964 444


Q ss_pred             CCCC
Q psy13443        160 VDKK  163 (188)
Q Consensus       160 ~~~~  163 (188)
                      .-+|
T Consensus       247 kl~y  250 (390)
T KOG2785|consen  247 KLPY  250 (390)
T ss_pred             ccCC
Confidence            4444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.30  E-value=0.048  Score=26.41  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=17.2

Q ss_pred             eeecCCCCCCCCCHHHHHHHHH
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHID   99 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (188)
                      +|.|.+|+..|.+...+.+|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4678888888888888888875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=94.06  E-value=0.084  Score=39.52  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=35.4

Q ss_pred             eecccCccccCCchhHHHHHHhhcC---------------------------CCCccCCCCcccccCcHHHHHHHH
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTG---------------------------EKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      ..|-.|...+.+...|..||.+-+.                           .....|..|.-.|-.+..|..|+.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            3677788888888888888875331                           112467788888888888888874

>KOG4173|consensus

Probab=94.00  E-value=0.037  Score=38.33  Aligned_cols=79  Identities=20%  Similarity=0.391  Sum_probs=59.5

Q ss_pred             eeecCC--CCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhc----------CCCCccCC--CCccc
Q psy13443         78 TYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHT----------GEKPHACG--MCGYE  143 (188)
Q Consensus        78 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~----------~~~~~~C~--~C~~~  143 (188)
                      .|.|++  |-+.|.....+..|..+-++   ..|..|.+.|.+...|..|+...+          |...|+|-  .|+..
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            466766  66677777777777765443   379999999999988888886543          33458885  49999


Q ss_pred             ccCcHHHHHHHHHhcC
Q psy13443        144 CAQGSQLMQHLRKVHK  159 (188)
Q Consensus       144 f~~~~~l~~H~~~~h~  159 (188)
                      |.+..+-..|+-..|+
T Consensus       156 FkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  156 FKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhhhhhhhhHHHHhcc
Confidence            9999999999877774

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.97  E-value=0.028  Score=30.12  Aligned_cols=30  Identities=27%  Similarity=0.524  Sum_probs=24.6

Q ss_pred             CCCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        131 GEKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       131 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      |+..++|+.|+..|....+..+|+...|+.
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            566688999999999988888998877753

>KOG2893|consensus

Probab=93.32  E-value=0.032  Score=39.57  Aligned_cols=42  Identities=24%  Similarity=0.518  Sum_probs=31.3

Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHH
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDH  125 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H  125 (188)
                      .|+.|++.|.....|.+|++..    .|.|.+|-+.+.+-..|..|
T Consensus        12 wcwycnrefddekiliqhqkak----hfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceee
Confidence            4788888888888888887653    37888888777666666665

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=92.77  E-value=0.15  Score=27.89  Aligned_cols=12  Identities=17%  Similarity=0.573  Sum_probs=7.7

Q ss_pred             CceeecCCCCCC
Q psy13443         76 SYTYMCYLCNYH   87 (188)
Q Consensus        76 ~~~~~C~~C~~~   87 (188)
                      ...|.|+.||..
T Consensus        23 ~~~F~CPnCG~~   34 (59)
T PRK14890         23 AVKFLCPNCGEV   34 (59)
T ss_pred             cCEeeCCCCCCe
Confidence            345777777765

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=91.55  E-value=0.062  Score=38.65  Aligned_cols=27  Identities=30%  Similarity=0.655  Sum_probs=19.1

Q ss_pred             CCCceecccCccccCCchhHHHHHHhh
Q psy13443        103 GEKPFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus       103 ~~~~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      ..+++.||.|+........|.--.++|
T Consensus       206 k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  206 KGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             cCCCCCCCCCCCcccccccceeeeecc
Confidence            446888999998877766665555554

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=91.37  E-value=0.17  Score=24.51  Aligned_cols=11  Identities=27%  Similarity=0.993  Sum_probs=6.3

Q ss_pred             eecccCccccC
Q psy13443        107 FRCALCAYSAR  117 (188)
Q Consensus       107 ~~C~~C~~~~~  117 (188)
                      |.|.+||..+.
T Consensus         3 ~~C~~CG~i~~   13 (34)
T cd00729           3 WVCPVCGYIHE   13 (34)
T ss_pred             EECCCCCCEeE
Confidence            56666665543

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=91.16  E-value=0.8  Score=28.74  Aligned_cols=25  Identities=36%  Similarity=0.905  Sum_probs=20.2

Q ss_pred             eec----ccCccccCCchhHHHHHHhhcC
Q psy13443        107 FRC----ALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       107 ~~C----~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |.|    ..|++...+...+..|.+.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            788    8888888888888888877653

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.61  E-value=0.051  Score=42.37  Aligned_cols=65  Identities=26%  Similarity=0.534  Sum_probs=54.7

Q ss_pred             ceecccCccccCCchhHHHHHH--hhcCC--CCccCC--CCcccccCcHHHHHHHHHhcCCCCCCCCcchh
Q psy13443        106 PFRCALCAYSARRKTHLDDHMR--RHTGE--KPHACG--MCGYECAQGSQLMQHLRKVHKVDKKGGEEEEE  170 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~  170 (188)
                      ++.|..|...|.....+..|.+  .|.++  +|+.|+  .|++.|.....+..|...+.+..+..+.....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNS  359 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccC
Confidence            5778889999999999999999  78888  899999  79999999999999998888877766654444

>KOG2893|consensus

Probab=90.30  E-value=0.06  Score=38.21  Aligned_cols=48  Identities=25%  Similarity=0.425  Sum_probs=37.7

Q ss_pred             ecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        108 RCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       108 ~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      =|..|++.|....-|..|++..    -|+|-+|.+..-+--.|..|--.+|+
T Consensus        12 wcwycnrefddekiliqhqkak----hfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehhhhhh
Confidence            3778999999999999887653    48999999887776677777655554

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=89.90  E-value=0.34  Score=21.43  Aligned_cols=10  Identities=20%  Similarity=0.670  Sum_probs=5.9

Q ss_pred             CceeecCCCC
Q psy13443         76 SYTYMCYLCN   85 (188)
Q Consensus        76 ~~~~~C~~C~   85 (188)
                      ...|.|+.||
T Consensus        14 ~v~f~CPnCG   23 (24)
T PF07754_consen   14 AVPFPCPNCG   23 (24)
T ss_pred             CceEeCCCCC
Confidence            3456666665

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.34  E-value=0.37  Score=23.81  Aligned_cols=13  Identities=23%  Similarity=0.452  Sum_probs=6.4

Q ss_pred             ecccCccccCCch
Q psy13443        108 RCALCAYSARRKT  120 (188)
Q Consensus       108 ~C~~C~~~~~~~~  120 (188)
                      .|+.|+..|.-..
T Consensus         4 ~CP~C~~~f~v~~   16 (37)
T PF13719_consen    4 TCPNCQTRFRVPD   16 (37)
T ss_pred             ECCCCCceEEcCH
Confidence            4555555554443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.19  E-value=0.093  Score=40.93  Aligned_cols=63  Identities=29%  Similarity=0.504  Sum_probs=56.8

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHH--hcCCC--Cceecc--cCccccCCchhHHHHHHhhcCCCCccCCC
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHID--THNGE--KPFRCA--LCAYSARRKTHLDDHMRRHTGEKPHACGM  139 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  139 (188)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|+..|.+...+..|...|.+..++.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL  356 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence            46889999999999999999999  89999  999999  79999999999999999998877766644

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=88.62  E-value=0.36  Score=21.84  Aligned_cols=10  Identities=30%  Similarity=0.849  Sum_probs=5.6

Q ss_pred             ecCCCCCCCC
Q psy13443         80 MCYLCNYHTP   89 (188)
Q Consensus        80 ~C~~C~~~f~   89 (188)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            4666666553

Several members are annotated as putative helicases.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=88.39  E-value=0.65  Score=31.51  Aligned_cols=25  Identities=40%  Similarity=1.108  Sum_probs=19.1

Q ss_pred             CceecccCccccCCchhHHHHHHhhcCCCCccCCCCcc
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGY  142 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  142 (188)
                      +.|.|++||..+             .++.|-+||+|+.
T Consensus       133 ~~~vC~vCGy~~-------------~ge~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYTH-------------EGEAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence            369999998653             3467889999984

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=88.37  E-value=0.4  Score=24.74  Aligned_cols=26  Identities=27%  Similarity=0.714  Sum_probs=14.0

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCccCCCCccc
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYE  143 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~  143 (188)
                      |.|..||..|...           ...+.+|+.||..
T Consensus         3 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIK-----------SKDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecC-----------CCCceECCCCCce
Confidence            5666666655433           1344566666643

present in RNA polymerase I, II and III

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.09  E-value=1.7  Score=27.40  Aligned_cols=82  Identities=17%  Similarity=0.275  Sum_probs=50.7

Q ss_pred             CCccccCCCcccccCHHHHHHHHHhhhcC--CcccCCCCCCcccccccccccccccccccccccC---------CCCcee
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQQIHMG--VNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRP---------DASYTY   79 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~--~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~---------~~~~~~   79 (188)
                      +-|-.|+.|+-+......|.+..  +|.-  .+|.=-        ..........|-.|...|..         .....|
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev--------~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y   82 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSY--HHLFPLKAFQEI--------PLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRY   82 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhh--hccCCCcccccc--------cccccCCCCcccCcCCCCCCcccccccccccccce
Confidence            45788999999998899998874  4421  112100        00000011234455444432         234469


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcC
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHN  102 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~  102 (188)
                      .|+.|...|-..-++..|...|.
T Consensus        83 ~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        83 VCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             eCCCCCCccccccchhhhhhccC
Confidence            99999999998888888887775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=87.69  E-value=0.65  Score=22.78  Aligned_cols=13  Identities=15%  Similarity=0.363  Sum_probs=6.4

Q ss_pred             ecccCccccCCch
Q psy13443        108 RCALCAYSARRKT  120 (188)
Q Consensus       108 ~C~~C~~~~~~~~  120 (188)
                      .|+.|+..|.-..
T Consensus         4 ~Cp~C~~~y~i~d   16 (36)
T PF13717_consen    4 TCPNCQAKYEIDD   16 (36)
T ss_pred             ECCCCCCEEeCCH
Confidence            4555555554443

>KOG2186|consensus

Probab=86.99  E-value=0.49  Score=34.08  Aligned_cols=47  Identities=17%  Similarity=0.463  Sum_probs=29.8

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHH
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMR  127 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~  127 (188)
                      .|.|..||....-+ .+..|+..-++ ..|.|..|+..|.. ..+..|..
T Consensus         3 ~FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            36677777666543 45557666555 45777777777776 55556654

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=86.82  E-value=0.59  Score=23.06  Aligned_cols=10  Identities=40%  Similarity=0.902  Sum_probs=4.4

Q ss_pred             ccCCCCcccc
Q psy13443        135 HACGMCGYEC  144 (188)
Q Consensus       135 ~~C~~C~~~f  144 (188)
                      ..|+.|+..|
T Consensus        26 v~C~~C~~~~   35 (38)
T TIGR02098        26 VRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEE
Confidence            3444444443

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>KOG2482|consensus

Probab=86.45  E-value=1.2  Score=33.60  Aligned_cols=51  Identities=25%  Similarity=0.461  Sum_probs=40.1

Q ss_pred             eecCCCCCCCCCHHHHHHHHHh-cCCC--------------------------CceecccCccccCCchhHHHHHHhh
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDT-HNGE--------------------------KPFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~-h~~~--------------------------~~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      ..|-.|....-....+..|+.. |.-.                          +...|..|.-.|-....|..|+..+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            5899999888889999999863 3211                          2357888999999999999998754

>PF15135 UPF0515: Uncharacterised protein UPF0515

Probab=86.26  E-value=1.3  Score=31.98  Aligned_cols=51  Identities=16%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             ccCCCCCCcccccccccccccccccccccccC------CCCceeecCCCCCCCCCHH
Q psy13443         42 FVCVHCKQFEVVPTRKTQTLEHCATCVDMVRP------DASYTYMCYLCNYHTPTRK   92 (188)
Q Consensus        42 ~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~C~~C~~~f~~~~   92 (188)
                      |-|..|+......--.......|..|.+.+.+      .|-..|.|+.|+..|....
T Consensus       113 FaC~~Cd~~WwRrvp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~~  169 (278)
T PF15135_consen  113 FACSSCDHMWWRRVPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGFA  169 (278)
T ss_pred             eeccccchHHHhccCcccccccccccccccCCCccccccceeeeecccccccchhhh
Confidence            77888866433333333334467778777766      3344689999999998553

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.24  E-value=0.13  Score=36.53  Aligned_cols=13  Identities=31%  Similarity=0.843  Sum_probs=9.8

Q ss_pred             ccCCCCcccccCc
Q psy13443        135 HACGMCGYECAQG  147 (188)
Q Consensus       135 ~~C~~C~~~f~~~  147 (188)
                      ..|+.||.+|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            5799999887643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.13  E-value=1.2  Score=33.82  Aligned_cols=24  Identities=17%  Similarity=0.467  Sum_probs=13.8

Q ss_pred             eecCC--CCCCCCCHHHHHHHHHhcC
Q psy13443         79 YMCYL--CNYHTPTRKYMRTHIDTHN  102 (188)
Q Consensus        79 ~~C~~--C~~~f~~~~~l~~H~~~h~  102 (188)
                      |.|+.  |.........|..|.++-+
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H  177 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH  177 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc
Confidence            55644  5555555666666666444

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=85.93  E-value=0.53  Score=29.56  Aligned_cols=29  Identities=17%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCc
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRK  119 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~  119 (188)
                      .|+.||..|....           ..|..|+.||..|...
T Consensus        11 ~Cp~CG~kFYDLn-----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   11 TCPSCGAKFYDLN-----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCCCcchhccCC-----------CCCccCCCCCCccCcc
Confidence            4677776665331           2566777777776665

The function of members of this family is unknown.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=85.90  E-value=0.48  Score=24.15  Aligned_cols=11  Identities=45%  Similarity=1.171  Sum_probs=6.2

Q ss_pred             ccCCCCCC-ccc
Q psy13443         42 FVCVHCKQ-FEV   52 (188)
Q Consensus        42 ~~C~~C~~-~~~   52 (188)
                      |.|..||. |..
T Consensus         6 y~C~~Cg~~fe~   17 (42)
T PF09723_consen    6 YRCEECGHEFEV   17 (42)
T ss_pred             EEeCCCCCEEEE
Confidence            56666665 443

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.61  E-value=0.61  Score=23.95  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=14.0

Q ss_pred             CCccCCCCcccccC----cHHHHHHHHHhc
Q psy13443        133 KPHACGMCGYECAQ----GSQLMQHLRKVH  158 (188)
Q Consensus       133 ~~~~C~~C~~~f~~----~~~l~~H~~~~h  158 (188)
                      ....|.+|++.+..    .+.|..|++..|
T Consensus        15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   15 KKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             S-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            34567777766654    367777775544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.17  E-value=0.93  Score=30.20  Aligned_cols=35  Identities=17%  Similarity=0.432  Sum_probs=18.1

Q ss_pred             CCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ   49 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   49 (188)
                      ...|.|+.|+..|.....+..    ......|.|+.||.
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~----~d~~~~f~Cp~Cg~  131 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL----LDMDGTFTCPRCGE  131 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh----cCCCCcEECCCCCC
Confidence            345777777777664332211    11222267777765

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.78  E-value=0.63  Score=23.27  Aligned_cols=8  Identities=25%  Similarity=1.028  Sum_probs=4.5

Q ss_pred             ccCCCCCC
Q psy13443         42 FVCVHCKQ   49 (188)
Q Consensus        42 ~~C~~C~~   49 (188)
                      |.|+.|+.
T Consensus         6 y~C~~Cg~   13 (41)
T smart00834        6 YRCEDCGH   13 (41)
T ss_pred             EEcCCCCC
Confidence            45555555

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.21  E-value=1  Score=30.43  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             CCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC
Q psy13443         10 AKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ   49 (188)
Q Consensus        10 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   49 (188)
                      ....|.|+.|+..|+....+.         ..|.|+.||.
T Consensus       106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~  136 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGA  136 (158)
T ss_pred             CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCC
Confidence            345677777777776665553         1377777765

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.05  E-value=0.17  Score=35.94  Aligned_cols=13  Identities=31%  Similarity=0.851  Sum_probs=9.9

Q ss_pred             eecccCccccCCc
Q psy13443        107 FRCALCAYSARRK  119 (188)
Q Consensus       107 ~~C~~C~~~~~~~  119 (188)
                      ..||.||.++...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            5799999887543

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=83.81  E-value=0.68  Score=24.44  Aligned_cols=11  Identities=27%  Similarity=0.893  Sum_probs=7.2

Q ss_pred             ceecccCcccc
Q psy13443        106 PFRCALCAYSA  116 (188)
Q Consensus       106 ~~~C~~C~~~~  116 (188)
                      .|.|..||+.|
T Consensus         6 ~Y~C~~Cg~~~   16 (49)
T COG1996           6 EYKCARCGREV   16 (49)
T ss_pred             EEEhhhcCCee
Confidence            46666677666

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=83.43  E-value=0.32  Score=35.13  Aligned_cols=26  Identities=35%  Similarity=0.640  Sum_probs=15.6

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHh
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      .+++.|+.|++.......|..-.|+|
T Consensus       207 ~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  207 GKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             CCCCCCCCCCCcccccccceeeeecc
Confidence            46677777776666555555444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.30  E-value=0.7  Score=30.12  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=15.0

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      ...|-+||+.|..   |.+|++.||+..
T Consensus        72 ~i~clecGk~~k~---LkrHL~~~~glt   96 (132)
T PF05443_consen   72 YIICLECGKKFKT---LKRHLRTHHGLT   96 (132)
T ss_dssp             -EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred             eeEEccCCcccch---HHHHHHHccCCC
Confidence            3678888888866   588888888754

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=81.31  E-value=1.9  Score=29.08  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             CCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCccc
Q psy13443        103 GEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYE  143 (188)
Q Consensus       103 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~  143 (188)
                      ...-|.|+.|+..|+....+.         .-|.|+.||..
T Consensus       106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~  137 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM  137 (158)
T ss_pred             CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence            344577888887777766653         24788888765

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=80.64  E-value=0.33  Score=32.55  Aligned_cols=17  Identities=12%  Similarity=0.225  Sum_probs=11.8

Q ss_pred             ceecccCccccCCchhH
Q psy13443        106 PFRCALCAYSARRKTHL  122 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l  122 (188)
                      .+.|+.||+.|.....+
T Consensus        28 ~~~c~~c~~~f~~~e~~   44 (154)
T PRK00464         28 RRECLACGKRFTTFERV   44 (154)
T ss_pred             eeeccccCCcceEeEec
Confidence            37777888777776554

>smart00614 ZnF_BED BED zinc finger

Probab=80.64  E-value=1.8  Score=22.85  Aligned_cols=23  Identities=39%  Similarity=0.824  Sum_probs=13.2

Q ss_pred             cCCCCcccccCc-----HHHHHHHHHhc
Q psy13443        136 ACGMCGYECAQG-----SQLMQHLRKVH  158 (188)
Q Consensus       136 ~C~~C~~~f~~~-----~~l~~H~~~~h  158 (188)
                      .|..|++.+...     +.|.+|++..|
T Consensus        20 ~C~~C~~~l~~~~~~gTs~L~rHl~~~h   47 (50)
T smart00614       20 KCKYCGKKLSRSSKGGTSNLRRHLRRKH   47 (50)
T ss_pred             EecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence            566666555433     57777776443

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>smart00531 TFIIE Transcription initiation factor IIE

Probab=80.52  E-value=4.1  Score=27.13  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             CCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccc
Q psy13443        104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYEC  144 (188)
Q Consensus       104 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  144 (188)
                      ...|.|+.|+..|.....+..   .. ....|.|+.||...
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l  133 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL---LD-MDGTFTCPRCGEEL  133 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEE
Confidence            345777777777665433221   01 12337777777654

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=80.38  E-value=1.8  Score=19.45  Aligned_cols=19  Identities=26%  Similarity=0.496  Sum_probs=13.2

Q ss_pred             cCCCCcccccCcHHHHHHHH
Q psy13443        136 ACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       136 ~C~~C~~~f~~~~~l~~H~~  155 (188)
                      .|++|++.+ ....+..|+-
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            577787777 5567777764

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		5e-11
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		9e-09
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		2e-10
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-10
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		2e-10
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		2e-10
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		3e-10
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-10
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		9e-10
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		7e-09
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		9e-09
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		4e-08
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-07
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		3e-07
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-06
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		2e-06
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		3e-06
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		4e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		8e-06
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-05
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		2e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		2e-04
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		3e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		3e-04
2ytg_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		6e-04
2eog_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 1   MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
           +  H RTH  ++ ++C  C        D+  H Q+ H G   + C  C K F      + 
Sbjct: 37  LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRA 95
Query: 59  QTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR 118
               H               Y C  C        ++R H  TH GEKP++C  C  S  R
Sbjct: 96  HQRTH----------TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR 145
Query: 119 KTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           + +L  H R HTGEKP+ C  CG   ++   L  H R
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           Y C  C        ++  H  TH GEKP++C  C  S   K  L  H R HTGEKP+ C 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 139 MCGYECAQGSQLMQHLR 155
            CG   +Q + L  H R
Sbjct: 82  ECGKSFSQRANLRAHQR 98

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C   +  R++ R+     HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP A
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
           C +CG + A+  +  +H  K+H
Sbjct: 65  CDICGRKFARSDERKRHT-KIH 85

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C   +  R++ R+     HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP A
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
           C +CG + A+  +  +H  K+H
Sbjct: 65  CDICGRKFARSDERKRHT-KIH 85

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C   +  R++ R+     HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP A
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
           C +CG + A+  +  +H  K+H
Sbjct: 64  CDICGRKFARSDERKRHT-KIH 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C   +  R++ R+     HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP A
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
           C +CG + A+  +  +H  K+H
Sbjct: 65  CDICGRKFARSDERKRHT-KIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C   +  R++ R+     HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP A
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
           C +CG + A+  +  +H  K+H
Sbjct: 65  CDICGRKFARSDERKRHT-KIH 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C   +  R++ ++     HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP A
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
           C +CG + A+  +  +H  K+H
Sbjct: 65  CDICGRKFARSDERKRHT-KIH 85

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 97  HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
           HI  H G+KPF+C +C  +  R  HL  H+R HTGEKP AC +CG + A+  +  +H  K
Sbjct: 25  HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT-K 83
Query: 157 VH 158
           +H
Sbjct: 84  IH 85

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 75  ASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
           +S  + C +C      +  ++TH+  H G KP++C  C Y+A   + L+ H+R H+ E+P
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 135 HACGMCGYECAQGSQLMQHLR 155
             C +C Y     SQL  HLR
Sbjct: 65  FKCQICPYASRNSSQLTVHLR 85

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           Y C  C         ++ H  TH GEKP++C  C  S  + + L  H R HTGEKP+ C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 139 MCGYECAQGSQLMQHLR 155
            CG   ++   L +H R
Sbjct: 65  ECGKSFSRSDHLSRHQR 81

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 84  CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYE 143
           C+     +  + THI  H G+KPF+C +C  +  + T L+ H+R HTGEKP AC +CG +
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 144 CA 145
            A
Sbjct: 72  FA 73

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 70  MVRPDASYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMR 127
           M RP     Y C +  C+     +  + THI  H G+KPF+C +C  +  ++  L+ H+R
Sbjct: 1   MERP-----YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Query: 128 RHTGEKPHACGMCGYECA 145
            HTGEKP AC +CG + A
Sbjct: 56  THTGEKPFACDICGRKFA 73

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 78  TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC 137
           ++ C +C         + TH+  H+  +P+ C  C     +K+ +  H   HTGEKPH C
Sbjct: 1   SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 138 GMCGYECAQGSQLMQHLRK 156
            +CG   +Q S L+ H RK
Sbjct: 61  QVCGKAFSQSSNLITHSRK 79

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 93  YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL 150
           +++ H+ TH GEKP++C    C +   R   L  H R+HTG KP  CG+C    ++   L
Sbjct: 32  HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 151 MQHLRK 156
             H+++
Sbjct: 92  ALHMKR 97

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH 153
           KPF+C +C  +  R  HL  H+R HTGEKP AC +CG + A+  +  +H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 79  YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
           ++C  C  H      +  H  TH  E+P+ C +C  + RR+ HL DH   H+ EKP  C 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 139 MCGYECAQGSQLMQH 153
            CG    Q   L  H
Sbjct: 78  ECGKGFCQSRTLAVH 92

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 74  DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE- 132
             S    C +C        ++  H  +H+GEKP+ C +C    +RK  +  H+R H G  
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 133 -KPHACGMCGYECAQGSQLMQHLRKVHKVDKKG 164
            KP+ C  CG   ++   L  H+++VH     G
Sbjct: 63  GKPYICQSCGKGFSRPDHLNGHIKQVHSGPSSG 95

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 82  YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           Y C++    R++ R+     H   H G KPF+C  C     R  HL  H R HTGEKP +
Sbjct: 37  YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 137 CGM--CGYECAQGSQLMQH 153
           C    C  + A+  +L++H
Sbjct: 97  CRWPSCQKKFARSDELVRH 115

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 103 GEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK 159
           G     C+ C    R   +L+ H+R HTGEKP+ C  C Y  AQ + L  HL + HK
Sbjct: 1   GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           EKP+ C  C  +  R + L  H R HTGEKP+ C  CG   +Q S L+ H R
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 31/122 (25%)
Query: 74  DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRC------------------------ 109
             S    C  C+    ++ Y++ H   H GEKPF C                        
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 110 -------ALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
                  ++C  + RR+  L  HM  HTGE P+ C  C  +  Q   L  H+ K+H    
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 163 KG 164
            G
Sbjct: 123 SG 124

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
           F C +C  +  R+ HL  H R HT EKP+ CG+C     +   L++H +K+H
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
           +KP++C  C  S R K +L  H   HTGEKP+ C +CG +  + + L  H R +H  +K
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEK 72

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 93  YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL 150
           +++ H+ TH GEKP+ C    C +   R   L  H R+HTG +P  C  C    ++   L
Sbjct: 22  HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 151 MQHLRK 156
             H+++
Sbjct: 82  ALHMKR 87

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 93  YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL 150
           +++ H+ TH GEKP+ C    C +   R   L  H R+HTG +P  C  C    ++   L
Sbjct: 23  HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 151 MQHLRK 156
             H+++
Sbjct: 83  ALHMKR 88

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 94  MRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQ 149
           +  HI  H GEKPF C    C     R  +L  H R HTGEKP  C    C    A  S 
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 150 LMQHLRKVHKVDKKG 164
             +H+  VH  DK G
Sbjct: 138 RKKHMH-VHTSDKSG 151

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 97  HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC 140
           H+  H G +P+ C +C    + K HL  HM+ HTG KP+ C +C
Sbjct: 28  HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 97  HIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHAC--GMCGYECAQGSQLMQ 152
           H+  H GEKP +C    C  S  R  +L  H+R HTGEKP+ C    C    +  S   +
Sbjct: 58  HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 153 HLRKVHKVDK 162
           H  + H  +K
Sbjct: 118 HQNRTHSNEK 127

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 74  DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
           D    Y+C +C         +R H + H+ EK + C  C        +   H   HTGE+
Sbjct: 18  DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 134 PHACGMCGYECAQGSQLMQHLRKVHKVDKKG 164
            + C  CG        +  H++ VH  D  G
Sbjct: 78  RYQCLACGKSFINYQFMSSHIKSVHSQDPSG 108

>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 369- 401) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
           EKPF+C  C  S  ++ HL  H R HTGEKP  
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 78  TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPH 135
            ++C  C         ++ H   H GEKPF+C    C        +L  H+R HTG++P+
Sbjct: 34  VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 136 ACGM--CGYECAQGSQLMQHL 154
            C    C  + AQ + L  H+
Sbjct: 94  VCPFDGCNKKFAQSTNLKSHI 114

>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693- 723) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
           +G KP+ C+ C  + R K++L  HMR HTGEKP
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.88
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.87
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.87
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.85
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.85
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.81
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.81
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.75
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.72
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.71
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.7
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.68
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.66
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.66
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.65
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.64
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.64
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.64
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.63
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.63
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.61
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.61
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.61
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.6
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.59
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.57
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.55
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.55
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.54
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.52
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.52
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.52
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.5
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.47
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.46
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.46
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.46
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.42
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.41
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.4
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.4
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.39
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.37
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.35
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.33
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.32
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.31
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.3
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.28
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.24
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.22
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.21
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.19
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.18
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.18
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.18
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.17
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.17
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.17
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.13
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.1
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.09
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.09
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.08
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.08
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.07
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.02
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.0
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.96
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.87
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.83
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.83
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.83
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.82
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.82
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.74
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.72
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.72
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.7
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.69
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.68
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.64
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.62
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.61
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.6
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.57
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.5
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.46
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.45
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.44
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.39
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.38
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.37
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.35
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.34
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.34
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.34
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.33
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.33
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.31
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.31
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.31
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.3
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.3
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.3
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.28
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.28
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.27
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.27
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.25
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.25
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.23
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.22
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.53
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.52
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.2
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.2
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.2
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.19
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.45
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.44
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.14
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.12
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.09
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.25
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.92
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.85
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.84
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.6
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.79
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.71
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.45
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.4
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.37
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.17
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.97
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.92
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.75
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.19
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	92.63
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.55
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.42
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	91.09
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.32
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	89.71
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.66
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.96
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	87.75
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	86.92
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	86.42
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	85.7
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	84.85
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	84.56
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	84.47
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	84.05
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	81.82
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	80.69
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	80.2

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=6.5e-35  Score=202.31  Aligned_cols=161  Identities=24%  Similarity=0.436  Sum_probs=85.1

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC-cccccccccccccccccccccccCCCCcee
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTY   79 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~   79 (188)
                      |..|++.|.++++|.|+.|++.|.....|..|++.+++..+|.|+.|++ |.....+..|...+          .+.++|
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~   78 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----------TGEKPY   78 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHH----------HCCCCE
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhc----------CCCCCc
Confidence            4567788888888888888888888888888886666677788888888 76666666665432          233455


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      .|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|+++|.+++||.|+.|++.|.+...|..|++.|++
T Consensus        79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            55566655555555555655555555555655665555555555555555555555565566666555555666555555


Q ss_pred             CCCCCCCcchhh
Q psy13443        160 VDKKGGEEEEEE  171 (188)
Q Consensus       160 ~~~~~~~~~~~~  171 (188)
                      .++|.|..+...
T Consensus       159 ~~~~~C~~C~~~  170 (190)
T 2i13_A          159 EKPYKCPECGKS  170 (190)
T ss_dssp             CCCEECTTTCCE
T ss_pred             CCCeECCCCCCc
Confidence            555555555443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=8.9e-35  Score=201.63  Aligned_cols=153  Identities=27%  Similarity=0.525  Sum_probs=134.5

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC-cccccccccccccccccccccccCCCCcee
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTY   79 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~   79 (188)
                      |..|+++|.++++|.|+.|++.|.+...|..|++.+++..+|.|+.|++ |.....+..|...+          .+.++|
T Consensus        37 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~  106 (190)
T 2i13_A           37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH----------TGEKPY  106 (190)
T ss_dssp             HHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH----------HTCCCE
T ss_pred             HHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhc----------CCCCCC
Confidence            4679999999999999999999999999999998888888899999999 87777777776543          456789


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      .|+.|++.|.+...|..|+++|.++++|.|++|++.|.....|..|+++|.+++||.|+.|++.|.+...|..|++.|++
T Consensus       107 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          107 ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC--
T ss_pred             cCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC
Q psy13443        160 VDKK  163 (188)
Q Consensus       160 ~~~~  163 (188)
                      ++||
T Consensus       187 ~k~~  190 (190)
T 2i13_A          187 KKTS  190 (190)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8765

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=6.7e-30  Score=177.04  Aligned_cols=146  Identities=18%  Similarity=0.356  Sum_probs=108.2

Q ss_pred             cCCCcccc--CCCcccccCHHHHHHHHHhhhcCCcccC--CCCCC-cccccccccccccccccccccccCCCCceeecC-
Q psy13443          9 LAKQQFEC--DFCPYGAKQAADVHNHVQQIHMGVNFVC--VHCKQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTYMCY-   82 (188)
Q Consensus         9 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C--~~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~-   82 (188)
                      ...++|.|  +.|++.|.....|..|++.+++.++|.|  +.|++ |.....+..|...+          .++++|.|. 
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h----------~~~~~~~C~~   77 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH----------TGEKNFTCDS   77 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTT----------TTCCCEECCS
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHc----------cCCCceeCCC
Confidence            44667888  5788888888888888877767777888  77887 76666666665532          445677887 


Q ss_pred             -CCCCCCCCHHHHHHHH-Hhc-CCCCceec--ccCccccCCchhHHHHHHhhcCCCCccCCC--CcccccCcHHHHHHHH
Q psy13443         83 -LCNYHTPTRKYMRTHI-DTH-NGEKPFRC--ALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLR  155 (188)
Q Consensus        83 -~C~~~f~~~~~l~~H~-~~h-~~~~~~~C--~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~  155 (188)
                       .|++.|.+...|..|+ +.| .+.++|.|  +.|++.|.+...|..|+++|.+++||.|+.  |++.|.+...|..|++
T Consensus        78 ~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~  157 (190)
T 1tf6_A           78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK  157 (190)
T ss_dssp             SSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHT
T ss_pred             CCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHH
Confidence             7888888888888887 556 35667888  778888888888888888888888888876  8888888888888887


Q ss_pred             HhcCCCCCCCCc
Q psy13443        156 KVHKVDKKGGEE  167 (188)
Q Consensus       156 ~~h~~~~~~~~~  167 (188)
                      .|++   +.|..
T Consensus       158 ~H~~---~~C~~  166 (190)
T 1tf6_A          158 VHAG---YPCKK  166 (190)
T ss_dssp             SSCS---CCCCS
T ss_pred             HhCC---CcCCC
Confidence            7766   55655

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=5.1e-28  Score=167.55  Aligned_cols=149  Identities=19%  Similarity=0.400  Sum_probs=133.0

Q ss_pred             ChhHHhhccCCCcccc--CCCcccccCHHHHHHHHHhhhcCCcccCC--CCCC-cccccccccccccccccccccccCCC
Q psy13443          1 MLRHVRTHLAKQQFEC--DFCPYGAKQAADVHNHVQQIHMGVNFVCV--HCKQ-FEVVPTRKTQTLEHCATCVDMVRPDA   75 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~--~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~   75 (188)
                      |..|+++|.++++|.|  +.|++.|.....|..|++.+++..+|.|+  .|++ |.....+..|.....        ..+
T Consensus        30 L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h--------~~~  101 (190)
T 1tf6_A           30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH--------NIK  101 (190)
T ss_dssp             HHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTS--------STT
T ss_pred             HHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhc--------CCC
Confidence            5689999999999999  88999999999999999777777889999  8999 888777877763211        134


Q ss_pred             Cceeec--CCCCCCCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhhcCCCCccCCC---CcccccCcH
Q psy13443         76 SYTYMC--YLCNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM---CGYECAQGS  148 (188)
Q Consensus        76 ~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~  148 (188)
                      ..+|.|  +.|++.|.+...|..|+++|+++++|.|++  |++.|.....|..|+++|.+   |.|..   |++.|.+..
T Consensus       102 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~  178 (190)
T 1tf6_A          102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWT  178 (190)
T ss_dssp             TSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHH
T ss_pred             cceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHH
Confidence            678999  899999999999999999999999999988  99999999999999999987   89999   999999999


Q ss_pred             HHHHHHHHhcCC
Q psy13443        149 QLMQHLRKVHKV  160 (188)
Q Consensus       149 ~l~~H~~~~h~~  160 (188)
                      .|..|++.||++
T Consensus       179 ~l~~H~~~h~~e  190 (190)
T 1tf6_A          179 LYLKHVAECHQD  190 (190)
T ss_dssp             HHHHHHTTCC--
T ss_pred             HHHHHHHhhcCC
Confidence            999999998863

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=5.2e-28  Score=162.25  Aligned_cols=139  Identities=23%  Similarity=0.453  Sum_probs=120.9

Q ss_pred             CCccccCCCcccccCHHHHHHHHHh---hhcCCcccCCCC-----CC-cccccccccccccccccccccccCCCCceeec
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQQ---IHMGVNFVCVHC-----KQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTYMC   81 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~---~~~~~~~~C~~C-----~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C   81 (188)
                      |.+|.|+.|++.|.+...|..|++.   +.+..+|.|+.|     ++ |.....+..|...+          .+.++|.|
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h----------~~~~~~~C   70 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH----------TGEKPHKC   70 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHH----------HCCCCCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhc----------CCCCCccC
Confidence            4589999999999999999999963   334566888743     36 77666677776543          45678999


Q ss_pred             CC--CCCCCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHH-HhhcCCCCccCCC--CcccccCcHHHHHHH
Q psy13443         82 YL--CNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHM-RRHTGEKPHACGM--CGYECAQGSQLMQHL  154 (188)
Q Consensus        82 ~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~-~~h~~~~~~~C~~--C~~~f~~~~~l~~H~  154 (188)
                      +.  |++.|.+...|..|+++|.++++|.|++  |++.|.+...|..|+ +.|.+++||.|+.  |++.|.+...|..|+
T Consensus        71 ~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~  150 (155)
T 2gli_A           71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV  150 (155)
T ss_dssp             CSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHH
T ss_pred             CCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHH
Confidence            85  9999999999999999999999999998  999999999999998 8899999999998  999999999999999


Q ss_pred             HHhcC
Q psy13443        155 RKVHK  159 (188)
Q Consensus       155 ~~~h~  159 (188)
                      +.+|+
T Consensus       151 ~~hhg  155 (155)
T 2gli_A          151 KTVHG  155 (155)
T ss_dssp             HHSCC
T ss_pred             HhhcC
Confidence            99985

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=1.7e-25  Score=144.44  Aligned_cols=116  Identities=24%  Similarity=0.406  Sum_probs=104.9

Q ss_pred             cCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCC
Q psy13443          9 LAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHT   88 (188)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f   88 (188)
                      +++++|.|++|++.|.+...|..|++.+++                                     .++|.|+.|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~C~~~f   45 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTG-------------------------------------EKPFECPKCGKCY   45 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSS-------------------------------------CCSCBCTTTCCBC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCC-------------------------------------CCCeECCCCCchh
Confidence            567899999999999999999999965543                                     3467888999999


Q ss_pred             CCHHHHHHHHHh---cCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443         89 PTRKYMRTHIDT---HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus        89 ~~~~~l~~H~~~---h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      .....|..|+..   +.+.++|.|++|++.|.....|..|+++|.+++||.|+.|++.|.+...|..|++..|+..
T Consensus        46 ~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           46 FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             cCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            999999999985   5688899999999999999999999999999999999999999999999999999877654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=1e-25  Score=151.04  Aligned_cols=130  Identities=25%  Similarity=0.351  Sum_probs=114.1

Q ss_pred             ccCCCccccCCCcccccCHHHHHHHHHhhhcCCc-ccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCC
Q psy13443          8 HLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNY   86 (188)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~-~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~   86 (188)
                      ...+.+|.|..|++.|.+...|..|++..|.+.+ .....                             ...|.|..|++
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~-----------------------------~~~~~C~~C~~   70 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV-----------------------------CYWEECPREGK   70 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCC-----------------------------CCBTTCTTSSC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcc-----------------------------ccccCCCCccc
Confidence            3456789999999999999999999966565432 11111                             12378999999


Q ss_pred             CCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhhcCCCCccCCC--CcccccCcHHHHHHHHHhcCCCC
Q psy13443         87 HTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      .|.....|..|+++|.++++|.|.+  |++.|.....|..|+++|.+++||.|.+  |++.|.+...|..|++.|+++++
T Consensus        71 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A           71 SFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             CCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             ccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998  9999999999999999999999999997  99999999999999999999999


Q ss_pred             CCCC
Q psy13443        163 KGGE  166 (188)
Q Consensus       163 ~~~~  166 (188)
                      |.|.
T Consensus       151 ~~c~  154 (155)
T 2rpc_A          151 GPSS  154 (155)
T ss_dssp             SCSC
T ss_pred             CCCC
Confidence            9885

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.92  E-value=3.7e-25  Score=141.90  Aligned_cols=112  Identities=29%  Similarity=0.571  Sum_probs=102.9

Q ss_pred             cCCCccccCC--CcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecC--CC
Q psy13443          9 LAKQQFECDF--CPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCY--LC   84 (188)
Q Consensus         9 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~--~C   84 (188)
                      +++++|.|..  |++.|.+...|..|++.+.+                                     .++|.|+  .|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~~~C   44 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-------------------------------------EKPYQCDFKDC   44 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHT-------------------------------------TCCEECCSTTC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCC-------------------------------------CCCccCCCCCC
Confidence            5788999997  99999999999999965543                                     3457787  79


Q ss_pred             CCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC--CCCcccccCcHHHHHHHHHh
Q psy13443         85 NYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC--GMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus        85 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  157 (188)
                      ++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|.+++||.|  +.|++.|.+...|..|+++|
T Consensus        45 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           45 ERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             cCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999  89999999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=1.2e-25  Score=146.61  Aligned_cols=107  Identities=16%  Similarity=0.262  Sum_probs=84.1

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYL   83 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~   83 (188)
                      |.++|.|+++|.|++|+++|.....|..|++.+.+                                     +++|.|+.
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~-------------------------------------~k~~~C~~   55 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSW-------------------------------------EKKYPCRY   55 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHC-------------------------------------CSCEECSS
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCC-------------------------------------CCCeeCCc
Confidence            45667888888888888888888888888754432                                     34577888


Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCC------CccCCCCcccccCc
Q psy13443         84 CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK------PHACGMCGYECAQG  147 (188)
Q Consensus        84 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~------~~~C~~C~~~f~~~  147 (188)
                      |+++|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++      +|+|..|++.|...
T Consensus        56 C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           56 CEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             SSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             cCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            88888888888888888888888888888888888888888888877654      47788888777654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=9e-25  Score=141.15  Aligned_cols=116  Identities=25%  Similarity=0.496  Sum_probs=100.1

Q ss_pred             CCCccccC--CCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCC
Q psy13443         10 AKQQFECD--FCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYH   87 (188)
Q Consensus        10 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~   87 (188)
                      .+++|.|+  .|++.|.+...|..|++ .|+                                     .++|.|..|++.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~-------------------------------------~~~~~C~~C~~~   43 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLH-THG-------------------------------------PRVHVCAECGKA   43 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHG-GGS-------------------------------------CCCEECTTTCCE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHH-HcC-------------------------------------CCCeECCCCCch
Confidence            35789999  89999999999999984 443                                     245889999999


Q ss_pred             CCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhhcCCCCccCC--CCcccccCcHHHHHHHHHhcCCCCC
Q psy13443         88 TPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACG--MCGYECAQGSQLMQHLRKVHKVDKK  163 (188)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  163 (188)
                      |.+...|..|+++|.++++|.|++  |++.|.....|..|+++|.++++|.|+  .|++.|.+...|..|+++|++++++
T Consensus        44 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           44 FVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             ESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             hCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            999999999999999999999986  999999999999999999999999996  5999999999999999999987764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=1.1e-24  Score=142.12  Aligned_cols=91  Identities=25%  Similarity=0.458  Sum_probs=87.4

Q ss_pred             CCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHH
Q psy13443         73 PDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQ  152 (188)
Q Consensus        73 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  152 (188)
                      ..|+++|.|++|+++|.....|..|+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|++.|.+...|..
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHH
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCC
Q psy13443        153 HLRKVHKVDKK  163 (188)
Q Consensus       153 H~~~~h~~~~~  163 (188)
                      |++.+|+++|+
T Consensus        97 H~~~hh~~~p~  107 (133)
T 2lt7_A           97 HIKSVHSQDPS  107 (133)
T ss_dssp             HHHHHTCCCTT
T ss_pred             HhHHhcCCCCC
Confidence            99999987654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.88  E-value=5.1e-22  Score=124.71  Aligned_cols=92  Identities=28%  Similarity=0.557  Sum_probs=88.3

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH  153 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  153 (188)
                      ...++|.|..|++.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|.++++|.|..|++.|.+...|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            55778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCC
Q psy13443        154 LRKVHKVDKKGG  165 (188)
Q Consensus       154 ~~~~h~~~~~~~  165 (188)
                      ++.|++.+++..
T Consensus        93 ~~~H~~~~~~~~  104 (106)
T 2ee8_A           93 KTLHMQTSSPTA  104 (106)
T ss_dssp             HHHTTSCCCCCC
T ss_pred             HHHhCCCCCCcC
Confidence            999999998864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=3.7e-22  Score=123.12  Aligned_cols=92  Identities=30%  Similarity=0.643  Sum_probs=87.2

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH  153 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  153 (188)
                      .++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|.++++|.|+.|++.|.+...|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCC
Q psy13443        154 LRKVHKVDKKGG  165 (188)
Q Consensus       154 ~~~~h~~~~~~~  165 (188)
                      ++.|+++.++..
T Consensus        84 ~~~h~~~~~p~~   95 (96)
T 2dmd_A           84 LRSHTGDSGPSS   95 (96)
T ss_dssp             HTTCCSCCCCCC
T ss_pred             HHHhcCCCCCCC
Confidence            999998876643

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.4e-22  Score=135.61  Aligned_cols=121  Identities=22%  Similarity=0.440  Sum_probs=106.5

Q ss_pred             ChhHHh---hccCCCccccCCC-----cccccCHHHHHHHHHhhhcCCcccCCC--CCC-cccccccccccccccccccc
Q psy13443          1 MLRHVR---THLAKQQFECDFC-----PYGAKQAADVHNHVQQIHMGVNFVCVH--CKQ-FEVVPTRKTQTLEHCATCVD   69 (188)
Q Consensus         1 l~~h~~---~h~~~~~~~C~~C-----~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~-~~~~~~~~~~~~~~c~~c~~   69 (188)
                      |..|++   +|.++++|.|+.|     ++.|.+...|..|++.+++..+|.|+.  |++ |.....+..|...+      
T Consensus        19 L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h------   92 (155)
T 2gli_A           19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH------   92 (155)
T ss_dssp             HHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHT------
T ss_pred             HHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHc------
Confidence            467887   6888999998753     499999999999998888888999985  999 88777777776643      


Q ss_pred             cccCCCCceeecCC--CCCCCCCHHHHHHHH-HhcCCCCceeccc--CccccCCchhHHHHHHhhcC
Q psy13443         70 MVRPDASYTYMCYL--CNYHTPTRKYMRTHI-DTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        70 ~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~  131 (188)
                          .+.++|.|+.  |++.|.+...|..|+ ++|.++++|.|++  |++.|.....|..|+++|+|
T Consensus        93 ----~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           93 ----TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             ----TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ----CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence                5678999998  999999999999999 8999999999998  99999999999999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.85  E-value=1.1e-21  Score=119.44  Aligned_cols=86  Identities=34%  Similarity=0.713  Sum_probs=80.6

Q ss_pred             CceeecC--CCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHH
Q psy13443         76 SYTYMCY--LCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH  153 (188)
Q Consensus        76 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  153 (188)
                      +++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.|++.|.+...|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            5789998  69999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCC
Q psy13443        154 LRKVHKVD  161 (188)
Q Consensus       154 ~~~~h~~~  161 (188)
                      ++.|++++
T Consensus        82 ~~~H~~~k   89 (90)
T 1a1h_A           82 TKIHLRQK   89 (90)
T ss_dssp             HGGGGC--
T ss_pred             HHHhcccC
Confidence            99998764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.85  E-value=1.5e-21  Score=116.83  Aligned_cols=82  Identities=32%  Similarity=0.671  Sum_probs=79.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHh
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      ||.|.+|++.|.....|..|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q psy13443        158 HK  159 (188)
Q Consensus       158 h~  159 (188)
                      ++
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            74

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=5.7e-21  Score=117.49  Aligned_cols=88  Identities=30%  Similarity=0.600  Sum_probs=82.6

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCC--CCccCCCCcccccCcHHHH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE--KPHACGMCGYECAQGSQLM  151 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~  151 (188)
                      .++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|.++  ++|.|+.|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy13443        152 QHLRKVHKVD  161 (188)
Q Consensus       152 ~H~~~~h~~~  161 (188)
                      .|++..|...
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9998766543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.85  E-value=1.9e-21  Score=124.47  Aligned_cols=102  Identities=26%  Similarity=0.487  Sum_probs=94.3

Q ss_pred             CCCceeecCC--CCCCCCCHHHHHHHHHhcCCCCceecc--cCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHH
Q psy13443         74 DASYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCA--LCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQ  149 (188)
Q Consensus        74 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  149 (188)
                      .++++|.|..  |++.|.....|..|+++|.+.++|.|+  .|++.|.+...|..|+++|.++++|.|+.|++.|.+...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            3567899997  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCC--CcchhhhHHh
Q psy13443        150 LMQHLRKVHKVDKKGG--EEEEEEEEEE  175 (188)
Q Consensus       150 l~~H~~~~h~~~~~~~--~~~~~~~~~~  175 (188)
                      |..|++.|++.++|.|  ..+.......
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~  109 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARS  109 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSH
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCH
Confidence            9999999999999999  6776655443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=2.6e-21  Score=124.71  Aligned_cols=104  Identities=22%  Similarity=0.384  Sum_probs=95.7

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHh---hcCCCCccCCCCcccccCcHHH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRR---HTGEKPHACGMCGYECAQGSQL  150 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~l  150 (188)
                      .+.++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|++.   +.++++|.|+.|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4677899999999999999999999999999999999999999999999999995   5678999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcchhhhHHhhh
Q psy13443        151 MQHLRKVHKVDKKGGEEEEEEEEEEEE  177 (188)
Q Consensus       151 ~~H~~~~h~~~~~~~~~~~~~~~~~~~  177 (188)
                      ..|++.|++.++|.|..+.........
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~~~~~  109 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFMQKKD  109 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEESSHHH
T ss_pred             HHHHHHcCCCCCccCCCccchhCCHHH
Confidence            999999999999999998876554443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=2.1e-20  Score=118.04  Aligned_cols=86  Identities=27%  Similarity=0.569  Sum_probs=82.7

Q ss_pred             CCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHH
Q psy13443         73 PDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQ  152 (188)
Q Consensus        73 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  152 (188)
                      +.++++|.| .|++.|.....|..|+++|.+.++|.|++|++.|.....|..|+++|.++++|.|++|++.|.....|..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            467889999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q psy13443        153 HLRKVHK  159 (188)
Q Consensus       153 H~~~~h~  159 (188)
                      |++.+++
T Consensus        84 H~~~~~~   90 (110)
T 2csh_A           84 HVTSCTK   90 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHccc
Confidence            9999885

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=2.8e-20  Score=116.91  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=55.5

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH  153 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  153 (188)
                      .++++|.|.+|++.|.....|..|+++|.  ++|.|.+|++.|.....|..|+. |.+++||.|..|++.|.+...|..|
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H   88 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRH   88 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHH
Confidence            34455666666666666666666666653  45666666666666666666664 6666666666666666666666666


Q ss_pred             HH-HhcCCCCCCC
Q psy13443        154 LR-KVHKVDKKGG  165 (188)
Q Consensus       154 ~~-~~h~~~~~~~  165 (188)
                      ++ .|.+.+++.+
T Consensus        89 ~~~~H~~~~~~~~  101 (107)
T 1wjp_A           89 QVEVHNQNNMAPT  101 (107)
T ss_dssp             HHHTSCCCCCCCC
T ss_pred             HHHHcCCCCCCCC
Confidence            65 4445555544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=3.3e-20  Score=124.15  Aligned_cols=101  Identities=25%  Similarity=0.453  Sum_probs=90.0

Q ss_pred             ChhHHhh-ccCCCc--------cccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccc
Q psy13443          1 MLRHVRT-HLAKQQ--------FECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMV   71 (188)
Q Consensus         1 l~~h~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~   71 (188)
                      |..|+++ |.+..+        |.|..|++.|.....|..|++.+++                                 
T Consensus        41 L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------------   87 (155)
T 2rpc_A           41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG---------------------------------   87 (155)
T ss_dssp             HHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC---------------------------------
T ss_pred             HHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC---------------------------------
Confidence            4679887 776655        8999999999999999999965544                                 


Q ss_pred             cCCCCceeecCC--CCCCCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         72 RPDASYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        72 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                          .++|.|..  |++.|.....|..|+++|+++++|.|++  |++.|.....|..|+++|++++||.|.
T Consensus        88 ----~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           88 ----EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             ----CCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             ----CCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence                34578877  9999999999999999999999999997  999999999999999999999999986

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=5.8e-21  Score=121.60  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=23.3

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHH
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      |..|+++|++++||.|+.|++.|.....|..|++
T Consensus         7 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~   40 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN   40 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHH
T ss_pred             hhhheeeeCCCCCEECCccCchhcCHHHHHHHHH
Confidence            4556667777777777777777777777777764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=4e-20  Score=119.18  Aligned_cols=98  Identities=27%  Similarity=0.388  Sum_probs=89.0

Q ss_pred             CceeecC--CCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCC--CcccccCcHHHH
Q psy13443         76 SYTYMCY--LCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLM  151 (188)
Q Consensus        76 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~  151 (188)
                      +++|.|+  .|++.|.+...|..|+++| +.++|.|++|++.|.....|..|+++|.++++|.|++  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            5679999  8999999999999999999 8889999999999999999999999999999999986  999999999999


Q ss_pred             HHHHHhcCCCCCCCC--cchhhhHH
Q psy13443        152 QHLRKVHKVDKKGGE--EEEEEEEE  174 (188)
Q Consensus       152 ~H~~~~h~~~~~~~~--~~~~~~~~  174 (188)
                      .|++.|++.++|.|.  .+......
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~  106 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQ  106 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             HHHHHhCCCCceECCCCCCCCccCC
Confidence            999999999999995  46554433

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.81  E-value=1.5e-19  Score=113.36  Aligned_cols=93  Identities=23%  Similarity=0.419  Sum_probs=83.6

Q ss_pred             ccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCC
Q psy13443          8 HLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYH   87 (188)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~   87 (188)
                      ...+++|.|.+|++.|.....|..|++.+++                                     .++|.|.+|++.
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~C~~~   54 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTD-------------------------------------ERPYTCDICHKA   54 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCC-------------------------------------SCCCBCSSSCCB
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCC-------------------------------------CCCcCCCCccch
Confidence            3457799999999999999999999965443                                     346888999999


Q ss_pred             CCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         88 TPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |.....|..|+++|.++++|.|.+|++.|.....|..|+++|.+++||.+
T Consensus        55 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           55 FRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             hCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999999999999999999999999999999998865

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.4e-19  Score=111.45  Aligned_cols=92  Identities=24%  Similarity=0.620  Sum_probs=82.3

Q ss_pred             hccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCC
Q psy13443          7 THLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNY   86 (188)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~   86 (188)
                      ++.+++||.|++|++.|.....|..|++.++                                     +.++|.|..|++
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------------------------~~~~~~C~~C~~   44 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------------------------------GVKPYKCKTCDY   44 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------------------------------CCCSEECSSSCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcC-------------------------------------CCCCEeCCCCCC
Confidence            3567899999999999999999999985433                                     245688999999


Q ss_pred             CCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCc
Q psy13443         87 HTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      .|.....|..|+++|.++++|.|++|++.|.....|..|+++|+++++.
T Consensus        45 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           45 AAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             EESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             ccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999999999999999999987653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=4.4e-20  Score=116.01  Aligned_cols=91  Identities=11%  Similarity=0.200  Sum_probs=80.9

Q ss_pred             hhhcCCcccCCCCCC-cccccccccccccccccccccccCCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCc
Q psy13443         35 QIHMGVNFVCVHCKQ-FEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCA  113 (188)
Q Consensus        35 ~~~~~~~~~C~~C~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  113 (188)
                      .+.+.++|.|..|++ |.....+..|...+            .++|.|.+|++.|.....|..|++ |.++++|.|.+|+
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H------------~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~   76 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC------------RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECM   76 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHH------------HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGT
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHC------------CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCcccc
Confidence            345566799999999 88888888887653            368999999999999999999996 9999999999999


Q ss_pred             cccCCchhHHHHHH-hhcCCCCccCC
Q psy13443        114 YSARRKTHLDDHMR-RHTGEKPHACG  138 (188)
Q Consensus       114 ~~~~~~~~l~~H~~-~h~~~~~~~C~  138 (188)
                      +.|.....|..|++ +|.++++|.+.
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             chhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999997 89999999875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=3.3e-20  Score=118.09  Aligned_cols=92  Identities=18%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHh--cCCCCcee-cccCcccc--CCchhHHHHHHhhcCCCCccCCCCcccccCcH
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDT--HNGEKPFR-CALCAYSA--RRKTHLDDHMRRHTGEKPHACGMCGYECAQGS  148 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~C~~~~--~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  148 (188)
                      .++++|.|..|++.|.....|..|+++  |.+.+++. |++|++.|  .....|..|+++|.+++||.|++|++.|.+..
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~   94 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQ   94 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHH
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHH
Confidence            567899999999999999999999998  77666654 99999998  89999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCC
Q psy13443        149 QLMQHLRKVHKVDKKGG  165 (188)
Q Consensus       149 ~l~~H~~~~h~~~~~~~  165 (188)
                      .|..|++.+|.......
T Consensus        95 ~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           95 DLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             HHHHHHHHTTTTTCSCC
T ss_pred             HHHHHHHHhCCcccCCC
Confidence            99999999987765543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.79  E-value=4.4e-19  Score=109.97  Aligned_cols=86  Identities=29%  Similarity=0.697  Sum_probs=80.8

Q ss_pred             CCCceeecCC--CCCCCCCHHHHHHHHHhcCCCCceecc--cCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHH
Q psy13443         74 DASYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCA--LCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQ  149 (188)
Q Consensus        74 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  149 (188)
                      ...++|.|..  |++.|.....|..|+++|.++++|.|+  .|++.|.....|..|+++|.+++||.|+.|++.|.+...
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            4456799996  999999999999999999999999996  699999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q psy13443        150 LMQHLRKVHK  159 (188)
Q Consensus       150 l~~H~~~~h~  159 (188)
                      |..|++.|++
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=3.2e-19  Score=108.47  Aligned_cols=87  Identities=25%  Similarity=0.536  Sum_probs=76.2

Q ss_pred             CCCccccC--CCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCC
Q psy13443         10 AKQQFECD--FCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYH   87 (188)
Q Consensus        10 ~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~   87 (188)
                      |++||.|+  .|++.|.....|..|++.+++                                     .++|.|..|++.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~C~~~   43 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTG-------------------------------------QKPFQCRICMRN   43 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHC-------------------------------------CCCEECTTTCCE
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCC-------------------------------------CCCccCCCCCcc
Confidence            46899998  699999999999999965543                                     346889999999


Q ss_pred             CCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCC
Q psy13443         88 TPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK  133 (188)
Q Consensus        88 f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  133 (188)
                      |.....|..|+++|.++++|.|++|++.|.....|..|+++|++++
T Consensus        44 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             ESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            9999999999999999999999999999999999999999998865

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.78  E-value=2.6e-19  Score=108.65  Aligned_cols=82  Identities=29%  Similarity=0.683  Sum_probs=78.3

Q ss_pred             CceeecCC--CCCCCCCHHHHHHHHHhcCCCCceecc--cCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHH
Q psy13443         76 SYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCA--LCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLM  151 (188)
Q Consensus        76 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  151 (188)
                      ..+|.|..  |++.|.....|..|+++|.++++|.|+  .|++.|.....|..|+++|.+++||.|+.|++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            45799999  999999999999999999999999997  59999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy13443        152 QHLRKV  157 (188)
Q Consensus       152 ~H~~~~  157 (188)
                      .|++.|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            999876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=8.5e-19  Score=104.69  Aligned_cols=82  Identities=28%  Similarity=0.608  Sum_probs=74.4

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCCCCHH
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRK   92 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~~~   92 (188)
                      ||.|+.|++.|.....|..|++.+++                                     .++|.|+.|++.|....
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~C~~~f~~~~   43 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSD-------------------------------------TRPYPCQYCGKRFHQKS   43 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT-------------------------------------CCCEECSSSCCEESSHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCC-------------------------------------CCCeeCCcCChhhCCHH
Confidence            68999999999999999999965543                                     34688999999999999


Q ss_pred             HHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443         93 YMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        93 ~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      .|..|+++|.++++|.|++|++.|.+...|..|+++|+|
T Consensus        44 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.77  E-value=2.7e-20  Score=112.94  Aligned_cols=85  Identities=22%  Similarity=0.376  Sum_probs=79.9

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHH
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      +++|.|.+|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+++|++ .+|.|+.|++.|.+...|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            36899999999999999999999999999999999999999999999999999985 78999999999999999999999


Q ss_pred             HhcCCC
Q psy13443        156 KVHKVD  161 (188)
Q Consensus       156 ~~h~~~  161 (188)
                      .+|+..
T Consensus        80 ~~h~~~   85 (88)
T 1llm_C           80 RLKKLV   85 (88)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988643

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=6e-19  Score=98.52  Aligned_cols=55  Identities=33%  Similarity=0.679  Sum_probs=29.9

Q ss_pred             CCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       104 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      +|||.|.+|++.|.....|..|+++|++++||.|+.|+++|...+.|..|+++|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            3455555555555555555555555555555555555555555555555555444

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.3e-18  Score=108.64  Aligned_cols=87  Identities=18%  Similarity=0.393  Sum_probs=78.7

Q ss_pred             hccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCC
Q psy13443          7 THLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNY   86 (188)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~   86 (188)
                      .|+++++|.| .|++.|.....|..|++.++.                                     .++|.|..|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~C~~   45 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLG-------------------------------------LRPYGCGVCGK   45 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSC-------------------------------------CCSEECTTTSC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCC-------------------------------------CcCccCCCCCc
Confidence            5889999999 999999999999999965443                                     34688999999


Q ss_pred             CCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443         87 HTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      .|.....|..|+++|.++++|.|++|++.|.....|..|++.|..
T Consensus        46 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           46 KFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             EESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            999999999999999999999999999999999999999998753

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=7.2e-19  Score=98.20  Aligned_cols=58  Identities=19%  Similarity=0.485  Sum_probs=55.4

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCC
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK  133 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  133 (188)
                      ++||.|.+|+++|.....|..|+++|++++||.|++|++.|.....|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999999864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=5.2e-18  Score=104.12  Aligned_cols=87  Identities=23%  Similarity=0.534  Sum_probs=77.0

Q ss_pred             cCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCC
Q psy13443          9 LAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHT   88 (188)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f   88 (188)
                      +++++|.|++|++.|.....|..|++.+++                                     .++|.|..|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~C~~~f   45 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSG-------------------------------------EKPYSCPVCGLRF   45 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCS-------------------------------------SCSEECSSSCCEE
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCC-------------------------------------CCCCcCCCCCCcc
Confidence            578899999999999999999999854432                                     4568899999999


Q ss_pred             CCHHHHHHHHHhcCCC--CceecccCccccCCchhHHHHHH-hhcCC
Q psy13443         89 PTRKYMRTHIDTHNGE--KPFRCALCAYSARRKTHLDDHMR-RHTGE  132 (188)
Q Consensus        89 ~~~~~l~~H~~~h~~~--~~~~C~~C~~~~~~~~~l~~H~~-~h~~~  132 (188)
                      .....|..|+++|++.  ++|.|++|++.|.....|..|++ .|.+.
T Consensus        46 ~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           46 KRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            9999999999999987  89999999999999999999986 67653

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.75  E-value=2.3e-18  Score=103.48  Aligned_cols=78  Identities=21%  Similarity=0.503  Sum_probs=74.9

Q ss_pred             eeec--CCCCCCCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhhcCCCCccCCC---CcccccCcHHH
Q psy13443         78 TYMC--YLCNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM---CGYECAQGSQL  150 (188)
Q Consensus        78 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~l  150 (188)
                      ||.|  +.|++.|.....|..|+++|.++++|.|+.  |++.|.....|..|+++|.+   |.|..   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5889  999999999999999999999999999988  99999999999999999988   99999   99999999999


Q ss_pred             HHHHHHhc
Q psy13443        151 MQHLRKVH  158 (188)
Q Consensus       151 ~~H~~~~h  158 (188)
                      ..|++.+|
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.2e-17  Score=99.06  Aligned_cols=72  Identities=28%  Similarity=0.539  Sum_probs=66.8

Q ss_pred             CCCceeecCC--CCCCCCCHHHHHHHHH-hcCCCCceeccc--CccccCCchhHHHHHHhhcCCCCccCCCCccccc
Q psy13443         74 DASYTYMCYL--CNYHTPTRKYMRTHID-THNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECA  145 (188)
Q Consensus        74 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  145 (188)
                      ++.++|.|..  |++.|.....|..|++ .|.++++|.|++  |++.|.....|..|+++|.+++||.|..|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4567888886  9999999999999999 799999999999  9999999999999999999999999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.7e-18  Score=107.03  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             CCCCHHHHHHHHHhcCCCCceecccCccccC-CchhHHHHHHhhcC-CCCccCCCCcccccCcHHHHHHHHHhcCCCCCC
Q psy13443         87 HTPTRKYMRTHIDTHNGEKPFRCALCAYSAR-RKTHLDDHMRRHTG-EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKG  164 (188)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  164 (188)
                      ++.....+..|+++|.++++|.|.+|++.|. ....|..|+++|.+ ++||.|.+|++.|.+...|..|++.||+.++..
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            4455566778999999999999999999999 99999999999998 899999999999999999999999999988865


Q ss_pred             CCc
Q psy13443        165 GEE  167 (188)
Q Consensus       165 ~~~  167 (188)
                      ...
T Consensus        85 ~~~   87 (98)
T 2gqj_A           85 AEA   87 (98)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=4.5e-17  Score=98.00  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceee
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYM   80 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~   80 (188)
                      |..|+++|++++||.|.+|++.|.....|..|++.++...                                 ..+++|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~---------------------------------~~~~~~~   49 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN---------------------------------FVPAAFV   49 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS---------------------------------CCCCCEE
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc---------------------------------CCCcceE
Confidence            4567777777777888888888887777877775444321                                 0124567


Q ss_pred             cCCCCCCCCCHHHHHHHHHhcCCCCceecccCcccc
Q psy13443         81 CYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSA  116 (188)
Q Consensus        81 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~  116 (188)
                      |..|++.|.....|..|+++|++++++.|..|+.++
T Consensus        50 C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           50 CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            777777777777777777777777777777776554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=2.2e-16  Score=97.62  Aligned_cols=85  Identities=27%  Similarity=0.609  Sum_probs=75.2

Q ss_pred             CCCccccCC--CcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecC--CCC
Q psy13443         10 AKQQFECDF--CPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCY--LCN   85 (188)
Q Consensus        10 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~--~C~   85 (188)
                      ..++|.|..  |++.|.....|..|++.+++                                     .++|.|.  .|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~~~C~   54 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTG-------------------------------------EKPYKCTWEGCD   54 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSC-------------------------------------CCCEECCSSSCC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCC-------------------------------------CCCeeCCCCCCC
Confidence            356899996  99999999999999965443                                     3457785  699


Q ss_pred             CCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443         86 YHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        86 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      +.|.....|..|+++|.++++|.|++|++.|.....|..|+++|.+
T Consensus        55 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.68  E-value=1.2e-16  Score=96.73  Aligned_cols=83  Identities=25%  Similarity=0.600  Sum_probs=73.8

Q ss_pred             CCccccCC--CcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecC--CCCC
Q psy13443         11 KQQFECDF--CPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCY--LCNY   86 (188)
Q Consensus        11 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~--~C~~   86 (188)
                      ..+|.|..  |++.|.....|..|++.++                                     +.++|.|+  .|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------------------------~~~~~~C~~~~C~~   45 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------------------------------GEKPYHCDWDGCGW   45 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------------------------------SSCCEECCSTTTCC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------------------------------CCCCcCCCCCCCCC
Confidence            56899999  9999999999999985433                                     24568886  5999


Q ss_pred             CCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhc
Q psy13443         87 HTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  130 (188)
                      .|.....|..|+++|.++++|.|+.|++.|.....|..|+++|.
T Consensus        46 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           46 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             EESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             ccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999873

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.3e-16  Score=94.01  Aligned_cols=64  Identities=31%  Similarity=0.589  Sum_probs=44.9

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      .++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|++++||+|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3455677777777777777777777777777777777777777777777777777777777665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=4.9e-17  Score=97.85  Aligned_cols=75  Identities=28%  Similarity=0.528  Sum_probs=49.2

Q ss_pred             HHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCC----CCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCcch
Q psy13443         95 RTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE----KPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEEEE  169 (188)
Q Consensus        95 ~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~  169 (188)
                      ..|+++|.++++|.|.+|++.|.....|..|++.+++.    ++|.|..|++.|.+...|..|++.|++.+++.|..+.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            34666666666677777777776666666666655543    5667777777777777777777766666666665543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.5e-16  Score=96.70  Aligned_cols=76  Identities=12%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHhcCCCCceecccCcccc-CCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHH-HHHhcCCCCC
Q psy13443         86 YHTPTRKYMRTHIDTHNGEKPFRCALCAYSA-RRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH-LRKVHKVDKK  163 (188)
Q Consensus        86 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~~  163 (188)
                      .+|.....+..|++.+.++++|.|++|++.| .....|..|+++| +++||.|..|++.|.....|..| ++.|. .+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~-~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN-SLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC-CCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC-CCCC
Confidence            3667788899999999999999999999999 9999999999999 99999999999999999999999 66665 4444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.2e-16  Score=94.16  Aligned_cols=66  Identities=32%  Similarity=0.586  Sum_probs=62.8

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG  165 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  165 (188)
                      .+.++++|.|.+|++.|.....|..|+++|.+++||.|++|++.|.....|..|++.|++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            456778999999999999999999999999999999999999999999999999999999999987

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.7e-16  Score=90.95  Aligned_cols=65  Identities=29%  Similarity=0.595  Sum_probs=52.8

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKG  164 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  164 (188)
                      +|.++++|.|.+|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|+++++..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            35677788888888888888888888888888888888888888888888888888888777654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.64  E-value=1.1e-17  Score=108.46  Aligned_cols=72  Identities=21%  Similarity=0.434  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443         87 HTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus        87 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      .|.....|..|+ .|+++++|.|++|++.|.....|..|+++|  ++||.|+.|++.|.....|..|++.||++.
T Consensus        56 ~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           56 LLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             GTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             ccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            445667777777 688899999999999999999999999999  889999999999999999999999999763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=4.5e-16  Score=90.98  Aligned_cols=60  Identities=35%  Similarity=0.647  Sum_probs=30.3

Q ss_pred             CCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCC
Q psy13443        103 GEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus       103 ~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      ++++|.|.+|++.|.....|..|+++|.+++||+|..|++.|.....|..|++.|++++|
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            444455555555555555555555555555555555555555555555555555544443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.1e-16  Score=94.38  Aligned_cols=70  Identities=30%  Similarity=0.507  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCCceecccCccccCCchhHHHHHH-hhcCC-CCccCCCCcccccCcHHHHHHHHHhcCCCCCC
Q psy13443         95 RTHIDTHNGEKPFRCALCAYSARRKTHLDDHMR-RHTGE-KPHACGMCGYECAQGSQLMQHLRKVHKVDKKG  164 (188)
Q Consensus        95 ~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  164 (188)
                      ..|+++|.++++|.|++|++.|.....|..|++ .|.++ ++|.|+.|++.|.....|..|++.+|+...+.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            458889999999999999999999999999997 57664 79999999999999999999999998766543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=6.4e-16  Score=90.33  Aligned_cols=62  Identities=34%  Similarity=0.695  Sum_probs=59.4

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCc
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      .+.++|.|..|++.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|++++||
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            56788999999999999999999999999999999999999999999999999999999886

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.1e-16  Score=97.72  Aligned_cols=68  Identities=25%  Similarity=0.570  Sum_probs=53.4

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHH-hc---CCCCceecccCccccCCchhHHHH-HHhhcCCCCccCCCCc
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHID-TH---NGEKPFRCALCAYSARRKTHLDDH-MRRHTGEKPHACGMCG  141 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~~~~~~C~~C~  141 (188)
                      .+++||.|..|++.|.....|..|++ +|   .++++|.|.+|++.|.....|..| +++|.+++||.|.++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            56778888888888888888888886 47   456788888888888888888888 7788888888877643

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=6.3e-16  Score=89.88  Aligned_cols=64  Identities=39%  Similarity=0.633  Sum_probs=52.1

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      .++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|++.|.....|..|++.|+++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            3467778888888888888888888888888888888888888888888888888888877543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.61  E-value=8.7e-17  Score=97.28  Aligned_cols=82  Identities=15%  Similarity=0.310  Sum_probs=73.1

Q ss_pred             CCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCCCCCCCCC
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPT   90 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~C~~~f~~   90 (188)
                      ++||.|++|++.|.....|..|++.+.+                                     +++|.|+.|++.|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~-------------------------------------~~~~~C~~C~k~f~~   43 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTG-------------------------------------EKPFACDICGRKFAR   43 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC-------------------------------------CCCEECTTTCCEESS
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCC-------------------------------------CCCccCCCCCCccCC
Confidence            4799999999999999999999965543                                     346889999999999


Q ss_pred             HHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhc
Q psy13443         91 RKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus        91 ~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  130 (188)
                      ...|..|+++|++ .+|.|+.|++.|.....|..|++.++
T Consensus        44 ~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           44 SDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999985 78999999999999999999998754

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.61  E-value=6.6e-16  Score=85.56  Aligned_cols=56  Identities=39%  Similarity=0.697  Sum_probs=40.2

Q ss_pred             CCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       104 ~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +++|.|++|++.|.....|..|+++|.+++||.|+.|++.|.....|..|++.+|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            46677777777777777777777777777777777777777777777777777763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=9.6e-16  Score=91.55  Aligned_cols=59  Identities=20%  Similarity=0.378  Sum_probs=35.2

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +...++|.|++|++.|.....|..|+++|++++||.|.+|+++|.....|..|++..|.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            33445566666666666666666666666666666666666666666666666555443

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=6.4e-16  Score=88.27  Aligned_cols=61  Identities=25%  Similarity=0.498  Sum_probs=53.3

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHh-h-cCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRR-H-TGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ++|.++++|.|+.|++.|.....|..|++. | .+++||.|+.|++.|.+...|..|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            467788899999999999999999999887 6 478899999999999999999999998886

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=2.6e-16  Score=97.29  Aligned_cols=70  Identities=14%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             cCCCCceecccCccccCCchhHHHHHH-hh---cCCCCccCCCCcccccCcHHHHHH-HHHhcCCCCCCCCcchh
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMR-RH---TGEKPHACGMCGYECAQGSQLMQH-LRKVHKVDKKGGEEEEE  170 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~~~~~~~~~  170 (188)
                      -.+++||.|..|++.|.....|..|++ +|   .+++||.|..|++.|.....|..| ++.|.+++||.|.....
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            457899999999999999999999998 58   568999999999999999999999 89999999999987443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.59  E-value=3.8e-15  Score=89.19  Aligned_cols=78  Identities=18%  Similarity=0.409  Sum_probs=69.6

Q ss_pred             cccc--CCCcccccCHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceeecCC--CCCCC
Q psy13443         13 QFEC--DFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYL--CNYHT   88 (188)
Q Consensus        13 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~C~~--C~~~f   88 (188)
                      ||.|  +.|++.|.....|..|++.+.+                                     +++|.|+.  |++.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------------------------------~~~~~C~~~~C~~~f   43 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQ-------------------------------------QLPYECPHEGCDKRF   43 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHT-------------------------------------TCCEECCSTTCCCEE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCC-------------------------------------CCCeeCCCCCCcCcc
Confidence            6899  9999999999999999965543                                     34688877  99999


Q ss_pred             CCHHHHHHHHHhcCCCCceeccc---CccccCCchhHHHHHHhhc
Q psy13443         89 PTRKYMRTHIDTHNGEKPFRCAL---CAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus        89 ~~~~~l~~H~~~h~~~~~~~C~~---C~~~~~~~~~l~~H~~~h~  130 (188)
                      .....|..|+++|++   |.|+.   |++.|.....|..|+++|+
T Consensus        44 ~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           44 SLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            999999999999988   99999   9999999999999998874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=5.2e-15  Score=85.46  Aligned_cols=62  Identities=23%  Similarity=0.660  Sum_probs=58.9

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCc
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      .++++|.|..|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|++++|.
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            56789999999999999999999999999999999999999999999999999999998874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=4.7e-15  Score=87.48  Aligned_cols=64  Identities=23%  Similarity=0.524  Sum_probs=54.5

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcC---CCCccCCCCcccccCcHHHHHHHHHhcCCCCC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTG---EKPHACGMCGYECAQGSQLMQHLRKVHKVDKK  163 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  163 (188)
                      +|+++++|.|.+|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|++.+|.....
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            36788899999999999999999999998885   78899999999999999999999777765543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.1e-14  Score=86.06  Aligned_cols=69  Identities=19%  Similarity=0.365  Sum_probs=64.6

Q ss_pred             CCCCceeccc--CccccCCchhHHHHHH-hhcCCCCccCCC--CcccccCcHHHHHHHHHhcCCCCCCCCcchh
Q psy13443        102 NGEKPFRCAL--CAYSARRKTHLDDHMR-RHTGEKPHACGM--CGYECAQGSQLMQHLRKVHKVDKKGGEEEEE  170 (188)
Q Consensus       102 ~~~~~~~C~~--C~~~~~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~  170 (188)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|+.  |++.|.+...|..|++.|+++++|.|..+..
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            4678999987  9999999999999999 799999999999  9999999999999999999999999998764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.55  E-value=6.5e-15  Score=81.47  Aligned_cols=53  Identities=23%  Similarity=0.627  Sum_probs=27.8

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |.|++|++.|.....|..|+++|.+++||.|+.|++.|.+...|..|++.|++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            44555555555555555555555555555555555555555555555555444

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.55  E-value=6.4e-15  Score=81.48  Aligned_cols=56  Identities=38%  Similarity=0.789  Sum_probs=50.8

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      +++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999998863

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.2e-14  Score=84.45  Aligned_cols=61  Identities=26%  Similarity=0.502  Sum_probs=57.4

Q ss_pred             CCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCC
Q psy13443         73 PDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK  133 (188)
Q Consensus        73 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  133 (188)
                      +.++++|.|.+|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+++.
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            4667899999999999999999999999999999999999999999999999999998754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=1.4e-14  Score=80.11  Aligned_cols=56  Identities=29%  Similarity=0.692  Sum_probs=53.5

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK  133 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  133 (188)
                      ||.|..|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58999999999999999999999999999999999999999999999999998765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=89.37  Aligned_cols=70  Identities=13%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             hhHHhhccCCCccccCCCccccc-CHHHHHHHHHhhhcCCcccCCCCCCcccccccccccccccccccccccCCCCceee
Q psy13443          2 LRHVRTHLAKQQFECDFCPYGAK-QAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYM   80 (188)
Q Consensus         2 ~~h~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~   80 (188)
                      ..|+++|.++++|.|.+|++.|. ....|..|++.+++                                    ..++|.
T Consensus        13 ~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~------------------------------------~~~~~~   56 (98)
T 2gqj_A           13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQK------------------------------------LQDALK   56 (98)
T ss_dssp             SHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHH------------------------------------HHHHHS
T ss_pred             HHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcC------------------------------------CCCCEE
Confidence            35666666666666666666666 66666666644332                                    023455


Q ss_pred             cCCCCCCCCCHHHHHHHHHhcCCCCce
Q psy13443         81 CYLCNYHTPTRKYMRTHIDTHNGEKPF  107 (188)
Q Consensus        81 C~~C~~~f~~~~~l~~H~~~h~~~~~~  107 (188)
                      |.+|++.|.....|..|+++|++++++
T Consensus        57 C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           57 CQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666665553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.5e-14  Score=86.38  Aligned_cols=60  Identities=17%  Similarity=0.389  Sum_probs=54.9

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHH-HhhcCCC
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHM-RRHTGEK  133 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~-~~h~~~~  133 (188)
                      ...++|.|++|++.|.....|..|+++|++++||.|++|++.|.....|..|+ ++|.++.
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            55678999999999999999999999999999999999999999999999997 4676653

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.6e-14  Score=84.95  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=18.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHH
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      .|+++|++++||.|++|++.|.....|..|++
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHH
Confidence            45555555555555555555555555555553

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.4e-14  Score=80.03  Aligned_cols=53  Identities=38%  Similarity=0.830  Sum_probs=31.8

Q ss_pred             ceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      +|.|++|++.|.....|..|+++|.+++||.|+.|++.|.+...|..|++..|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            45666666666666666666666666666666666666666666666654333

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.9e-14  Score=83.72  Aligned_cols=58  Identities=29%  Similarity=0.639  Sum_probs=46.9

Q ss_pred             hcCCCCceecc--cCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHh
Q psy13443        100 THNGEKPFRCA--LCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       100 ~h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      ++.++++|.|+  .|++.|.....|..|+++|.+++||.|+.|++.|.....|..|++.|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            56677788886  48888888888888888888888888888888888888888887765

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.3e-13  Score=84.50  Aligned_cols=61  Identities=18%  Similarity=0.333  Sum_probs=54.4

Q ss_pred             CceeecCCCCCCC-CCHHHHHHHHHhcCCCCceecccCccccCCchhHHHH-HHhhcCCCCccC
Q psy13443         76 SYTYMCYLCNYHT-PTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDH-MRRHTGEKPHAC  137 (188)
Q Consensus        76 ~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H-~~~h~~~~~~~C  137 (188)
                      .++|.|+.|++.| .....|..|+++| ++++|.|.+|++.|.....|..| +++|.+...+.+
T Consensus        32 ~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             TSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            4578999999999 9999999999999 99999999999999999999999 888976544443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=84.37  Aligned_cols=61  Identities=28%  Similarity=0.333  Sum_probs=37.9

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHh-cCCCCc--------eecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDT-HNGEKP--------FRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      .+.|..|++.|.....|..|+++ |.+.++        |.|.+|++.|.....|..|+++|++++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            35677777777777777777776 666655        55555555555555555555555555555553

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1e-13  Score=77.40  Aligned_cols=56  Identities=27%  Similarity=0.667  Sum_probs=52.0

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHH-HhhcCC
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHM-RRHTGE  132 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~-~~h~~~  132 (188)
                      ++|.|..|++.|.....|..|+++|+++++|.|+.|++.|.....|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            47899999999999999999999999999999999999999999999997 577654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1e-13  Score=78.90  Aligned_cols=58  Identities=22%  Similarity=0.419  Sum_probs=53.8

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHh-c-CCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDT-H-NGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      .++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.....|..|++.+++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            457899999999999999999999998 7 588999999999999999999999998875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=4.4e-13  Score=81.84  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             ceecccCccccCCchhHHHHHHh-hcCCCC--------ccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRR-HTGEKP--------HACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      .+.|..|++.|.....|..|+++ |.++++        |.|..|++.|.+...|..|+++|+++++|.|..
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47899999999999999999998 888887        999999999999999999999999999999863

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=79.82  Aligned_cols=64  Identities=16%  Similarity=0.328  Sum_probs=56.7

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCC---CCceecccCccccCCchhHHHHHH-hhcCCCCccC
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNG---EKPFRCALCAYSARRKTHLDDHMR-RHTGEKPHAC  137 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C  137 (188)
                      .++++|.|.+|++.|.....|..|+++|.+   +++|.|.+|++.|.....|..|++ .|.+.++...
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            567899999999999999999999999985   889999999999999999999995 5666665443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.40  E-value=4.2e-14  Score=91.40  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=79.7

Q ss_pred             HhhccCCCccccCCCccc--ccCHHHHHHHHHhhhcCCcccCCCCCC-cc-----c-ccccccccccccccccccccCCC
Q psy13443          5 VRTHLAKQQFECDFCPYG--AKQAADVHNHVQQIHMGVNFVCVHCKQ-FE-----V-VPTRKTQTLEHCATCVDMVRPDA   75 (188)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~--f~~~~~l~~H~~~~~~~~~~~C~~C~~-~~-----~-~~~~~~~~~~~c~~c~~~~~~~~   75 (188)
                      +..++|.++|.|...+..  |.....+..+. .....+++.|..|.+ +.     . ...+..|..           +.+
T Consensus         4 ~~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~-l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~-----------h~~   71 (129)
T 2wbt_A            4 SDVDSGSKKYLSNHKGIFIHVTLEELKRYHQ-LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA-----------SKA   71 (129)
T ss_dssp             -CCCTTCCGGGGCSSCEEEECCHHHHHHHTT-SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHH-----------HHH
T ss_pred             chhcccccccccccCCeeeeecHHhhhcccc-CChhhCcccchhhhcccCCCcccCCHHHHHHHHH-----------hCC
Confidence            346788999988776544  33222222222 222223477877765 43     1 111112211           245


Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCC
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  132 (188)
                      +++|.|.+|++.|.....|..|+++|  +++|.|+.|++.|.....|..|+++|++.
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            78999999999999999999999999  78999999999999999999999999874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3.4e-13  Score=76.81  Aligned_cols=58  Identities=16%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecc-cCccccCCchhHHHHHHhhcCCCC
Q psy13443         75 ASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCA-LCAYSARRKTHLDDHMRRHTGEKP  134 (188)
Q Consensus        75 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~~~~~~~l~~H~~~h~~~~~  134 (188)
                      +.++|.|..|++.|. ...|..|+++ .++++|.|+ .|++.|.....|..|+++|....|
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            345677777777777 6677777666 666677777 677777777777777766655443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.8e-16  Score=91.51  Aligned_cols=65  Identities=18%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             HHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443         95 RTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus        95 ~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      ..|+++|.++++|.|++|++.|.....|..       +++|.|+.|++.|.....|..|++.|+++++|.|.
T Consensus         7 ~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~   71 (73)
T 2ctu_A            7 GKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPS   71 (73)
T ss_dssp             CCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCC
T ss_pred             HHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCC
Confidence            344445555555555555555554444433       34455555555555555555555555555555544

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.9e-13  Score=77.08  Aligned_cols=59  Identities=20%  Similarity=0.397  Sum_probs=54.1

Q ss_pred             CCCCceecccCccccCCchhHHHHHHhhcCCCCccCC-CCcccccCcHHHHHHHHHhcCCCC
Q psy13443        102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG-MCGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus       102 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      .+.++|.|..|++.|. ...|..|+++ .+++||.|+ .|++.|.....|..|++.|-+..+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4678999999999999 9999999999 999999999 999999999999999998766554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=8.4e-13  Score=76.61  Aligned_cols=57  Identities=33%  Similarity=0.704  Sum_probs=53.5

Q ss_pred             CCCceeecC--CCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhc
Q psy13443         74 DASYTYMCY--LCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus        74 ~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~  130 (188)
                      .+.++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            567899997  699999999999999999999999999999999999999999998873

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.4e-13  Score=71.05  Aligned_cols=44  Identities=30%  Similarity=0.592  Sum_probs=33.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.34  E-value=5.3e-13  Score=70.31  Aligned_cols=44  Identities=36%  Similarity=0.637  Sum_probs=32.5

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777765

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=4.7e-13  Score=69.79  Aligned_cols=44  Identities=32%  Similarity=0.479  Sum_probs=30.3

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34566666777777777777777777777777777777777665

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.34  E-value=3.9e-13  Score=70.86  Aligned_cols=44  Identities=39%  Similarity=0.624  Sum_probs=29.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666666666666655

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.1e-13  Score=70.36  Aligned_cols=44  Identities=36%  Similarity=0.573  Sum_probs=33.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.3e-13  Score=70.67  Aligned_cols=44  Identities=36%  Similarity=0.689  Sum_probs=32.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777766

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.7e-13  Score=70.94  Aligned_cols=44  Identities=30%  Similarity=0.438  Sum_probs=32.5

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|.+|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.33  E-value=4.2e-13  Score=70.71  Aligned_cols=44  Identities=32%  Similarity=0.562  Sum_probs=33.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777765

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.6e-13  Score=70.53  Aligned_cols=44  Identities=32%  Similarity=0.508  Sum_probs=30.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55666666777777777777777777777777777777777665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5e-13  Score=70.37  Aligned_cols=44  Identities=34%  Similarity=0.535  Sum_probs=33.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56677777777777787777777777777777777777777766

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.8e-13  Score=70.46  Aligned_cols=44  Identities=36%  Similarity=0.613  Sum_probs=34.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            56677777778888888888888888888877777777877766

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.2e-13  Score=70.33  Aligned_cols=44  Identities=34%  Similarity=0.616  Sum_probs=33.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.1e-13  Score=70.76  Aligned_cols=44  Identities=30%  Similarity=0.557  Sum_probs=32.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4e-13  Score=70.80  Aligned_cols=44  Identities=32%  Similarity=0.491  Sum_probs=33.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.7e-13  Score=70.18  Aligned_cols=44  Identities=34%  Similarity=0.577  Sum_probs=31.5

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666777777777777777777777777777777777777665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.3e-13  Score=70.30  Aligned_cols=44  Identities=34%  Similarity=0.483  Sum_probs=29.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666655

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.4e-13  Score=70.26  Aligned_cols=44  Identities=30%  Similarity=0.582  Sum_probs=32.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56667777777777777777777777777777777777777765

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.2e-13  Score=70.35  Aligned_cols=44  Identities=32%  Similarity=0.572  Sum_probs=30.5

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            55566666777777777777777777777777777777777665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.32  E-value=3.6e-13  Score=70.93  Aligned_cols=44  Identities=34%  Similarity=0.505  Sum_probs=32.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6e-13  Score=70.10  Aligned_cols=44  Identities=36%  Similarity=0.662  Sum_probs=31.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            55666777777777777777777777777777777777777665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7.7e-13  Score=69.66  Aligned_cols=44  Identities=30%  Similarity=0.477  Sum_probs=31.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666777777777777777777777777777777777777665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.4e-13  Score=70.59  Aligned_cols=44  Identities=34%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666677777777777777777777777777777777777665

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7.2e-13  Score=69.78  Aligned_cols=44  Identities=36%  Similarity=0.650  Sum_probs=31.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.6e-13  Score=69.92  Aligned_cols=44  Identities=34%  Similarity=0.583  Sum_probs=29.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666667777777777777777777666666666666665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.32  E-value=4e-13  Score=70.79  Aligned_cols=44  Identities=27%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            55566666677777777777777777777767766667776665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.1e-13  Score=70.06  Aligned_cols=44  Identities=36%  Similarity=0.569  Sum_probs=30.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666777777777777777777777777777777777665

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7.2e-13  Score=69.75  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777766

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.1e-13  Score=70.37  Aligned_cols=44  Identities=34%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.4e-13  Score=70.28  Aligned_cols=44  Identities=34%  Similarity=0.603  Sum_probs=33.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777766

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.8e-13  Score=70.16  Aligned_cols=44  Identities=39%  Similarity=0.644  Sum_probs=31.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.6e-13  Score=69.95  Aligned_cols=44  Identities=32%  Similarity=0.496  Sum_probs=30.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566667777777777777777777777777777777777665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=6.5e-13  Score=69.96  Aligned_cols=44  Identities=32%  Similarity=0.502  Sum_probs=32.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777766

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5e-13  Score=70.38  Aligned_cols=44  Identities=27%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.4e-14  Score=83.11  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      .++++|.|.+|++.|.....|..       +++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus        14 ~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           14 LGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            56788999999999988877665       6789999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.31  E-value=6.9e-13  Score=69.84  Aligned_cols=44  Identities=36%  Similarity=0.567  Sum_probs=33.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.5e-13  Score=69.73  Aligned_cols=44  Identities=36%  Similarity=0.570  Sum_probs=31.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55666777777777777777777777777777777777777665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.1e-13  Score=70.04  Aligned_cols=44  Identities=34%  Similarity=0.608  Sum_probs=30.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55666667777777777777777777777777777777777665

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.1e-13  Score=69.82  Aligned_cols=44  Identities=27%  Similarity=0.538  Sum_probs=28.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666655

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.8e-13  Score=69.63  Aligned_cols=44  Identities=36%  Similarity=0.642  Sum_probs=34.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677777778888888888887778788777777777777766

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=9.1e-13  Score=69.38  Aligned_cols=44  Identities=20%  Similarity=0.211  Sum_probs=31.0

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566667777777777777777777777777777777777665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=9e-13  Score=69.40  Aligned_cols=44  Identities=32%  Similarity=0.562  Sum_probs=31.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45667777777777777777777777777777777777777665

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=69.05  Aligned_cols=45  Identities=7%  Similarity=0.087  Sum_probs=41.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999999999999999988778888999877

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4e-13  Score=70.80  Aligned_cols=44  Identities=41%  Similarity=0.705  Sum_probs=33.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677777777787788777777777777777777777777766

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.3e-13  Score=70.01  Aligned_cols=44  Identities=34%  Similarity=0.603  Sum_probs=33.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            56677777777777777777777777777777777777777766

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.5e-13  Score=69.49  Aligned_cols=44  Identities=36%  Similarity=0.611  Sum_probs=32.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            55667777777777777777777777777777777777777765

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.30  E-value=1.6e-12  Score=68.46  Aligned_cols=45  Identities=11%  Similarity=0.062  Sum_probs=41.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999987777888999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=68.29  Aligned_cols=45  Identities=7%  Similarity=-0.008  Sum_probs=41.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=68.95  Aligned_cols=44  Identities=32%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667777777777777777777777777777777777777765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=68.58  Aligned_cols=45  Identities=9%  Similarity=0.007  Sum_probs=41.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=67.82  Aligned_cols=44  Identities=11%  Similarity=0.031  Sum_probs=40.3

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      |+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67899999999999999999999999999987777788999876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=68.62  Aligned_cols=45  Identities=11%  Similarity=0.016  Sum_probs=41.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999987777788999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.5e-12  Score=68.56  Aligned_cols=45  Identities=7%  Similarity=-0.048  Sum_probs=41.7

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999988878888999877

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=68.69  Aligned_cols=45  Identities=9%  Similarity=0.056  Sum_probs=41.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999877

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.30  E-value=2.6e-12  Score=70.07  Aligned_cols=46  Identities=30%  Similarity=0.603  Sum_probs=28.5

Q ss_pred             cCCCCceecccCccccCCchhHHHHHH-hhcCCCCccCCCCcccccC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMR-RHTGEKPHACGMCGYECAQ  146 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~  146 (188)
                      |.++++|.|++|++.|.....|..|++ +|.+++||.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            445566666666666666666666664 5666666666666666654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=68.24  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=41.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999987777788999877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=68.52  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=69.02  Aligned_cols=44  Identities=36%  Similarity=0.587  Sum_probs=31.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45566677777777777777777777777777777777777665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=68.42  Aligned_cols=45  Identities=7%  Similarity=0.034  Sum_probs=41.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999987778888999876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=68.46  Aligned_cols=45  Identities=9%  Similarity=0.031  Sum_probs=41.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999987777788999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=68.63  Aligned_cols=45  Identities=11%  Similarity=0.023  Sum_probs=41.0

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=68.47  Aligned_cols=45  Identities=11%  Similarity=0.038  Sum_probs=41.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.29  E-value=1.6e-12  Score=68.39  Aligned_cols=45  Identities=7%  Similarity=0.045  Sum_probs=41.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.29  E-value=1.5e-12  Score=68.49  Aligned_cols=45  Identities=11%  Similarity=0.054  Sum_probs=41.0

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999999999999999977777778999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.9e-12  Score=68.14  Aligned_cols=45  Identities=11%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778999877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.9e-12  Score=68.09  Aligned_cols=45  Identities=7%  Similarity=-0.004  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=68.85  Aligned_cols=44  Identities=36%  Similarity=0.610  Sum_probs=29.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666677777777777777777777777766667766653

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.8e-12  Score=68.16  Aligned_cols=45  Identities=9%  Similarity=-0.049  Sum_probs=40.9

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778998876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.9e-12  Score=68.12  Aligned_cols=45  Identities=9%  Similarity=0.066  Sum_probs=41.0

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778999877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.3e-12  Score=67.82  Aligned_cols=45  Identities=9%  Similarity=0.082  Sum_probs=41.0

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999999999999999977777788999877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.1e-12  Score=67.94  Aligned_cols=45  Identities=7%  Similarity=0.017  Sum_probs=41.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999987777888999877

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.9e-12  Score=68.09  Aligned_cols=45  Identities=11%  Similarity=0.046  Sum_probs=41.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588999999999999999999999999999987777788999876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.3e-12  Score=67.81  Aligned_cols=45  Identities=9%  Similarity=0.016  Sum_probs=40.9

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478999999999999999999999999999977777778999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=68.43  Aligned_cols=45  Identities=7%  Similarity=0.020  Sum_probs=40.9

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999977767778999877

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=3.1e-12  Score=73.96  Aligned_cols=51  Identities=35%  Similarity=0.724  Sum_probs=24.9

Q ss_pred             Cceeccc--CccccCCchhHHHHHHhhcCCCCccCCC--CcccccCcHHHHHHHH
Q psy13443        105 KPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLR  155 (188)
Q Consensus       105 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~  155 (188)
                      ++|.|..  |++.|.....|..|+++|.+++||+|.+  |++.|.....|..|++
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            3444444  5555544445555554444445555532  5555555555555543

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.28  E-value=1.3e-12  Score=68.74  Aligned_cols=45  Identities=7%  Similarity=-0.039  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=68.38  Aligned_cols=45  Identities=11%  Similarity=0.041  Sum_probs=40.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999977777778999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.27  E-value=2e-12  Score=68.04  Aligned_cols=45  Identities=11%  Similarity=0.059  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478999999999999999999999999999987777788999877

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.9e-12  Score=67.41  Aligned_cols=45  Identities=7%  Similarity=-0.009  Sum_probs=41.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999988888888999877

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=68.71  Aligned_cols=44  Identities=34%  Similarity=0.537  Sum_probs=32.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHH-hhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMR-RHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|++|++.|.....|..|++ +|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5566777777777777777777777777777 7777777777765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=68.25  Aligned_cols=45  Identities=13%  Similarity=0.121  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999977777778999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=68.33  Aligned_cols=45  Identities=7%  Similarity=0.005  Sum_probs=40.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778998876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.5e-12  Score=67.66  Aligned_cols=45  Identities=7%  Similarity=-0.006  Sum_probs=40.7

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999977777778999876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=68.54  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=41.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999988878888999877

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-12  Score=68.23  Aligned_cols=45  Identities=9%  Similarity=0.036  Sum_probs=40.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999977767778999877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.27  E-value=2e-12  Score=67.98  Aligned_cols=45  Identities=9%  Similarity=0.015  Sum_probs=41.0

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778999877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=68.11  Aligned_cols=45  Identities=7%  Similarity=-0.061  Sum_probs=41.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778999877

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.3e-12  Score=67.82  Aligned_cols=44  Identities=41%  Similarity=0.727  Sum_probs=29.0

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666666543

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.6e-12  Score=67.59  Aligned_cols=45  Identities=11%  Similarity=0.042  Sum_probs=40.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999977777788999877

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.2e-12  Score=67.23  Aligned_cols=45  Identities=11%  Similarity=0.080  Sum_probs=40.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999977777778999877

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.2e-12  Score=67.82  Aligned_cols=45  Identities=9%  Similarity=-0.061  Sum_probs=40.7

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999977767777998876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3.6e-12  Score=67.03  Aligned_cols=45  Identities=11%  Similarity=-0.093  Sum_probs=41.0

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478999999999999999999999999999977777788999877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3e-12  Score=67.31  Aligned_cols=45  Identities=9%  Similarity=0.008  Sum_probs=41.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            478999999999999999999999999999988777888999877

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.25  E-value=8.6e-12  Score=72.07  Aligned_cols=56  Identities=30%  Similarity=0.584  Sum_probs=51.8

Q ss_pred             CCCceeecCC--CCCCCCCHHHHHHHHHhcCCCCceeccc--CccccCCchhHHHHHHhh
Q psy13443         74 DASYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRH  129 (188)
Q Consensus        74 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h  129 (188)
                      ...++|.|..  |++.|.....|..|+++|.++++|.|.+  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            5667899988  9999999999999999999999999975  999999999999998765

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.5e-12  Score=66.67  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            378899999999999999999999999999988778888999877

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=67.62  Aligned_cols=45  Identities=9%  Similarity=0.078  Sum_probs=40.7

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            478999999999999999999999999999977777778998876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.4e-12  Score=67.12  Aligned_cols=45  Identities=7%  Similarity=0.039  Sum_probs=40.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777778888764

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.24  E-value=4.6e-12  Score=66.63  Aligned_cols=45  Identities=7%  Similarity=-0.020  Sum_probs=40.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999977777778999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=68.42  Aligned_cols=45  Identities=11%  Similarity=0.062  Sum_probs=41.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999977777788999877

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.4e-12  Score=66.61  Aligned_cols=45  Identities=13%  Similarity=0.011  Sum_probs=40.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHH-hhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQ-QIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++ .+.+.++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            47899999999999999999999999999997 6666777988876

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.23  E-value=3.6e-12  Score=67.04  Aligned_cols=42  Identities=43%  Similarity=0.667  Sum_probs=23.5

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555554

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.22  E-value=4.7e-12  Score=65.20  Aligned_cols=40  Identities=33%  Similarity=0.633  Sum_probs=23.5

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +++|+++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            3455555566666666666666666666666655555555

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.6e-12  Score=66.60  Aligned_cols=42  Identities=33%  Similarity=0.612  Sum_probs=22.0

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344455555555555555555555555555555555555553

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.21  E-value=1.1e-11  Score=64.85  Aligned_cols=42  Identities=31%  Similarity=0.677  Sum_probs=26.9

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCc
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCG  141 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  141 (188)
                      +|+++++|.|.+|++.|.....|..|+++|.++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            455566666666666666666666666666666666666664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.5e-12  Score=66.63  Aligned_cols=42  Identities=36%  Similarity=0.664  Sum_probs=23.0

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            444555555555555555555555555555555555555554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=9e-12  Score=65.47  Aligned_cols=45  Identities=11%  Similarity=0.088  Sum_probs=40.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999977777788998764

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.8e-12  Score=65.92  Aligned_cols=42  Identities=38%  Similarity=0.757  Sum_probs=22.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555553

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.8e-12  Score=66.19  Aligned_cols=42  Identities=40%  Similarity=0.687  Sum_probs=28.3

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      ++|.++++|.|.+|++.|.....|..|+++|.+++||+|++|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            456666666776677777666667667666666666666665

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.7e-12  Score=65.95  Aligned_cols=42  Identities=33%  Similarity=0.640  Sum_probs=20.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            334444444555555555555555555555555444454443

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.1e-12  Score=66.12  Aligned_cols=42  Identities=36%  Similarity=0.574  Sum_probs=24.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=7.2e-12  Score=64.45  Aligned_cols=38  Identities=29%  Similarity=0.515  Sum_probs=17.1

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +|.++++|.|++|++.|.....|..|+++|.+++||+|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34444444444444444444444444444444444443

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.1e-12  Score=65.62  Aligned_cols=42  Identities=31%  Similarity=0.547  Sum_probs=25.1

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            445555556666666666666666666666666666666554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.9e-12  Score=66.15  Aligned_cols=42  Identities=38%  Similarity=0.643  Sum_probs=21.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555543

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.19  E-value=4.2e-13  Score=75.43  Aligned_cols=51  Identities=14%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             HHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHH
Q psy13443         96 THIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQ  149 (188)
Q Consensus        96 ~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  149 (188)
                      .|+++|.++++|.|+.|++.|.....|.   ++|.+++||.|+.|++.|.....
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            4667788888888888888888777665   67888888888888888876543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.7e-12  Score=65.95  Aligned_cols=42  Identities=36%  Similarity=0.624  Sum_probs=20.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            334444445555555555555555555555555555555443

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.4e-12  Score=65.77  Aligned_cols=42  Identities=40%  Similarity=0.655  Sum_probs=22.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.3e-12  Score=66.37  Aligned_cols=41  Identities=34%  Similarity=0.634  Sum_probs=19.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            33444444444444444444444444444444444444444

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6e-12  Score=66.16  Aligned_cols=42  Identities=40%  Similarity=0.728  Sum_probs=21.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344455555555555555555555555555555555555543

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.4e-12  Score=65.79  Aligned_cols=42  Identities=36%  Similarity=0.569  Sum_probs=22.5

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444455555555555555555555555555555555555554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=2.9e-11  Score=65.82  Aligned_cols=46  Identities=20%  Similarity=0.477  Sum_probs=42.6

Q ss_pred             CCCCceeecCCCCCCCCCHHHHHHHHH-hcCCCCceecccCccccCC
Q psy13443         73 PDASYTYMCYLCNYHTPTRKYMRTHID-THNGEKPFRCALCAYSARR  118 (188)
Q Consensus        73 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~~~~  118 (188)
                      +.+.++|.|.+|++.|.....|..|++ +|.++++|.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            356789999999999999999999997 9999999999999999975

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8e-12  Score=65.01  Aligned_cols=41  Identities=24%  Similarity=0.478  Sum_probs=23.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44555555556666666666666666666655555555555

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.2e-12  Score=65.84  Aligned_cols=42  Identities=33%  Similarity=0.554  Sum_probs=25.6

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      ++|.++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345556666666666666666666666666666666666554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.2e-12  Score=65.83  Aligned_cols=42  Identities=36%  Similarity=0.645  Sum_probs=21.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            334444555555555555555555555555555555555543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=63.77  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=39.0

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      |+++|.+++||.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456789999999999999999999999999999999999885

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.18  E-value=7e-12  Score=68.31  Aligned_cols=50  Identities=22%  Similarity=0.316  Sum_probs=30.1

Q ss_pred             cccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCC
Q psy13443        114 YSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKK  163 (188)
Q Consensus       114 ~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  163 (188)
                      +.|.....|..|+++|.+++||.|..|++.|.....|..|++.|++++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34555555555666666666666666666666666666666666655554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.4e-12  Score=66.04  Aligned_cols=42  Identities=36%  Similarity=0.646  Sum_probs=21.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=8.8e-12  Score=65.51  Aligned_cols=42  Identities=36%  Similarity=0.645  Sum_probs=21.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            334444555555555555555555555555555555555543

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1e-11  Score=65.25  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=17.5

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      ++|.++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            344444444444444444444444444444444444444

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.18  E-value=1.3e-11  Score=63.50  Aligned_cols=42  Identities=10%  Similarity=0.098  Sum_probs=37.7

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      |+++|++++||.|++|++.|.....|..|++.+.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            678999999999999999999999999999777777778874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=9.8e-12  Score=65.33  Aligned_cols=40  Identities=33%  Similarity=0.606  Sum_probs=19.0

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +++|.++++|.|.+|++.|.....|..|+++|.+++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3444444444444444444444444444444444444444

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=8.4e-12  Score=65.55  Aligned_cols=42  Identities=43%  Similarity=0.696  Sum_probs=23.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            444555555555555555555555555555555555555554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=64.59  Aligned_cols=41  Identities=34%  Similarity=0.571  Sum_probs=22.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44455555555555555555555555555555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.5e-12  Score=65.37  Aligned_cols=42  Identities=31%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555553

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.17  E-value=1.4e-11  Score=64.73  Aligned_cols=44  Identities=11%  Similarity=0.069  Sum_probs=39.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999997777777898864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.5e-12  Score=65.33  Aligned_cols=42  Identities=40%  Similarity=0.717  Sum_probs=24.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555555655665555555555555555555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.1e-12  Score=65.88  Aligned_cols=42  Identities=33%  Similarity=0.597  Sum_probs=23.7

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            444555555555555555555555555555555555555553

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=9.8e-12  Score=65.32  Aligned_cols=43  Identities=26%  Similarity=0.368  Sum_probs=40.7

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6788999999999999999999999999999999999999975

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.17  E-value=4.9e-12  Score=68.92  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCcc
Q psy13443         85 NYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA  136 (188)
Q Consensus        85 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~  136 (188)
                      ++.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4577888888999999999999999999999999999999999999998873

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.9e-12  Score=65.27  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|+.|++.|.....|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.17  E-value=1.8e-11  Score=64.95  Aligned_cols=40  Identities=33%  Similarity=0.578  Sum_probs=20.5

Q ss_pred             CCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCc
Q psy13443        102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCG  141 (188)
Q Consensus       102 ~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~  141 (188)
                      .++++|.|.+|++.|.....|..|+++|.+++||.|.+|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            3444555555555555555555555555555555555554

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.8e-12  Score=65.73  Aligned_cols=41  Identities=34%  Similarity=0.712  Sum_probs=20.7

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      +++|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34444455555555555555555555555555555555543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.5e-11  Score=64.59  Aligned_cols=44  Identities=9%  Similarity=0.015  Sum_probs=39.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58899999999999999999999999999997777777888864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=65.03  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999975

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.1e-11  Score=65.08  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcC-CCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG-EKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~-~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+ ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45556666666666666666666666666666666 6666664

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.4e-12  Score=64.91  Aligned_cols=41  Identities=27%  Similarity=0.559  Sum_probs=24.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            44555555566666666666666666666666655555555

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=64.20  Aligned_cols=44  Identities=11%  Similarity=0.081  Sum_probs=39.7

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999997777777888864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=64.56  Aligned_cols=41  Identities=34%  Similarity=0.510  Sum_probs=22.3

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|+++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            44455555555555555555555555555555555555554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.15  E-value=1.1e-11  Score=69.58  Aligned_cols=53  Identities=17%  Similarity=0.296  Sum_probs=43.6

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC-ccccccc
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ-FEVVPTR   56 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~-~~~~~~~   56 (188)
                      |..|+++|++++||.|+.|++.|.....|.   +.+.++.+|.|+.|++ |......
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            567999999999999999999999988886   3666677899999988 6554433

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=64.74  Aligned_cols=43  Identities=33%  Similarity=0.440  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.8e-11  Score=64.24  Aligned_cols=44  Identities=11%  Similarity=0.088  Sum_probs=39.7

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999997777777888864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=64.92  Aligned_cols=43  Identities=30%  Similarity=0.427  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.9e-11  Score=64.19  Aligned_cols=44  Identities=9%  Similarity=0.024  Sum_probs=39.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            58899999999999999999999999999997776777788864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.4e-11  Score=64.07  Aligned_cols=41  Identities=17%  Similarity=0.370  Sum_probs=25.4

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            44556666666666666666666666666666666666655

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=64.17  Aligned_cols=44  Identities=9%  Similarity=0.045  Sum_probs=39.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            48899999999999999999999999999997777777888864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=64.38  Aligned_cols=43  Identities=26%  Similarity=0.302  Sum_probs=40.3

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.2e-11  Score=63.96  Aligned_cols=44  Identities=14%  Similarity=0.138  Sum_probs=39.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999997777777888864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=64.19  Aligned_cols=44  Identities=9%  Similarity=0.134  Sum_probs=39.9

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999998777778888863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.7e-12  Score=65.52  Aligned_cols=40  Identities=35%  Similarity=0.696  Sum_probs=19.3

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +++|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3444444444444444444444444444444444444444

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.2e-11  Score=63.91  Aligned_cols=44  Identities=11%  Similarity=0.159  Sum_probs=39.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999997776777788864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=63.82  Aligned_cols=44  Identities=9%  Similarity=-0.026  Sum_probs=39.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            48899999999999999999999999999997777777888864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.2e-11  Score=63.27  Aligned_cols=43  Identities=9%  Similarity=0.129  Sum_probs=38.9

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999777777778874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=63.73  Aligned_cols=44  Identities=11%  Similarity=0.063  Sum_probs=39.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            48899999999999999999999999999997777777888864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.1e-11  Score=63.99  Aligned_cols=44  Identities=9%  Similarity=0.092  Sum_probs=39.3

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      ++++|++++||.|++|++.|.....|..|++.+.++++|.|..|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46789999999999999999999999999977777778999876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3e-11  Score=63.38  Aligned_cols=43  Identities=7%  Similarity=-0.005  Sum_probs=39.5

Q ss_pred             HhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          5 VRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      +++|++++||.|++|++.|.....|..|++.+.+.++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5789999999999999999999999999988888888999877

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=63.90  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|.++++|.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999975

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=1.8e-11  Score=62.89  Aligned_cols=39  Identities=26%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      ++|.++++|.|++|++.|.....|..|+++|.+++||+|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            344444445555555555544445555444444444443

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=64.19  Aligned_cols=44  Identities=9%  Similarity=0.039  Sum_probs=39.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            58899999999999999999999999999997776777888864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.1e-11  Score=63.99  Aligned_cols=44  Identities=7%  Similarity=0.065  Sum_probs=39.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999997776777788864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.1e-11  Score=63.97  Aligned_cols=44  Identities=11%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999997777777888864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.7e-11  Score=64.33  Aligned_cols=39  Identities=36%  Similarity=0.751  Sum_probs=19.5

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      ++|.++++|.|.+|++.|.....|..|+++|.+++||+|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            344444455555555555555555555555554455444

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1e-11  Score=65.20  Aligned_cols=42  Identities=29%  Similarity=0.525  Sum_probs=22.6

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|+++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555553

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.3e-11  Score=63.86  Aligned_cols=43  Identities=12%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999999999999999877777888886

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.1e-11  Score=63.36  Aligned_cols=43  Identities=7%  Similarity=0.033  Sum_probs=38.5

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5889999999999999999999999999999776677778874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.2e-11  Score=63.60  Aligned_cols=40  Identities=35%  Similarity=0.723  Sum_probs=20.0

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +++|.++++|.|++|++.|.....|..|+++|.+++||+|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3344444555555555555555555555555555555444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=63.65  Aligned_cols=40  Identities=33%  Similarity=0.649  Sum_probs=19.4

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +++|+++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3344444455555555555555555555444444444443

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.9e-11  Score=63.53  Aligned_cols=43  Identities=23%  Similarity=0.359  Sum_probs=39.9

Q ss_pred             HHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        124 DHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       124 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      .|+++|.+++||.|+.|++.|.....|..|++.|+++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            3677899999999999999999999999999999999999884

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=4.7e-11  Score=62.32  Aligned_cols=43  Identities=14%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             hhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCC
Q psy13443          6 RTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCK   48 (188)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~   48 (188)
                      ..|++++||.|+.|++.|.....|..|++.+.++++|.|+.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4689999999999999999999999999887777889999885

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.3e-11  Score=64.84  Aligned_cols=43  Identities=30%  Similarity=0.422  Sum_probs=40.3

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|+++++|.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999975

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=64.43  Aligned_cols=42  Identities=31%  Similarity=0.585  Sum_probs=22.2

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555553

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.4e-11  Score=63.12  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=18.3

Q ss_pred             HhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         99 DTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        99 ~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      ++|.++++|.|.+|++.|.....|..|+++|.+++||+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            344444444444444444444444444444444444444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=9.6e-12  Score=63.97  Aligned_cols=40  Identities=38%  Similarity=0.679  Sum_probs=18.9

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      +++|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444444443

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.2e-11  Score=63.24  Aligned_cols=43  Identities=9%  Similarity=0.044  Sum_probs=38.3

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4889999999999999999999999999999776667778874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.5e-11  Score=63.16  Aligned_cols=44  Identities=11%  Similarity=0.165  Sum_probs=40.1

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999998887888898863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.7e-11  Score=64.30  Aligned_cols=43  Identities=28%  Similarity=0.376  Sum_probs=40.5

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|+.|++.|.....|..|++.|++.++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999975

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.4e-11  Score=63.80  Aligned_cols=43  Identities=28%  Similarity=0.408  Sum_probs=40.0

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|+++++|.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677899999999999999999999999999999999999975

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3e-11  Score=62.10  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=37.5

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVC   44 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C   44 (188)
                      |+++|++++||.|+.|++.|.....|..|++.+.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            78899999999999999999999999999977777777876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.7e-11  Score=63.58  Aligned_cols=43  Identities=9%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      .|+++|++++||.|++|++.|.....|..|++.+.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999877788888886

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.10  E-value=2.8e-11  Score=62.16  Aligned_cols=41  Identities=29%  Similarity=0.519  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG  165 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  165 (188)
                      |+++|.+++||.|+.|++.|.....|..|++.|.++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56778999999999999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2e-11  Score=63.44  Aligned_cols=41  Identities=22%  Similarity=0.370  Sum_probs=22.8

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44455555555555555555555555555555555555554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.3e-11  Score=61.94  Aligned_cols=41  Identities=7%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVC   44 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C   44 (188)
                      |+++|++++||.|++|++.|.....|..|++.+.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            77899999999999999999999999999977667777776

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=62.67  Aligned_cols=42  Identities=12%  Similarity=0.130  Sum_probs=37.4

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVC   44 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C   44 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999977667777776

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.8e-11  Score=63.54  Aligned_cols=43  Identities=35%  Similarity=0.624  Sum_probs=29.3

Q ss_pred             HHhcCCCCceecc--cCccccCCchhHHHHHHhhcCCCCccCCCC
Q psy13443         98 IDTHNGEKPFRCA--LCAYSARRKTHLDDHMRRHTGEKPHACGMC  140 (188)
Q Consensus        98 ~~~h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C  140 (188)
                      .++|+++++|.|.  .|++.|.....|..|+++|.+++||+|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456666677776  677777777777777777777777777665

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.3e-11  Score=62.61  Aligned_cols=43  Identities=9%  Similarity=0.120  Sum_probs=38.6

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5889999999999999999999999999999776677778874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.3e-11  Score=63.89  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=39.9

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC-CCCCCCCc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK-VDKKGGEE  167 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~-~~~~~~~~  167 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|.+ .++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999 99999863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1e-10  Score=60.43  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=17.0

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            3444444444444444444444444444444444444

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.3e-11  Score=61.82  Aligned_cols=41  Identities=29%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             HHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443         97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus        97 H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |+++|+++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            34445555555555555555555555555555555555443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=8.2e-11  Score=61.70  Aligned_cols=38  Identities=32%  Similarity=0.471  Sum_probs=17.7

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      |.+++||.|..|++.|.....|..|++.|+++++|.|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34444444444444444444444444444444444443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=8.4e-11  Score=62.26  Aligned_cols=43  Identities=9%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             hccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC
Q psy13443          7 THLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ   49 (188)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   49 (188)
                      .|.++++|.|.+|++.|.....|..|++.+.++++|.|..|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4678899999999999999999999997777777899999875

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=6.3e-11  Score=61.52  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=39.1

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|.++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            567788999999999999999999999999999999999884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=63.17  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=39.5

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      |+++|.+++||.|+.|++.|.....|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            677899999999999999999999999999999999999884

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.3e-11  Score=62.16  Aligned_cols=42  Identities=29%  Similarity=0.376  Sum_probs=39.2

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGE  166 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  166 (188)
                      |+++|.+++||.|..|++.|.....|..|++.|+++++|.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            677899999999999999999999999999999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.1e-11  Score=62.20  Aligned_cols=39  Identities=44%  Similarity=0.723  Sum_probs=21.9

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      +|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=60.91  Aligned_cols=42  Identities=31%  Similarity=0.474  Sum_probs=39.2

Q ss_pred             HHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCC
Q psy13443         98 IDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGM  139 (188)
Q Consensus        98 ~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~  139 (188)
                      +++|.++++|.|.+|++.|.....|..|+++|.+++||+|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            467889999999999999999999999999999999999964

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=59.12  Aligned_cols=37  Identities=35%  Similarity=0.620  Sum_probs=17.8

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcCCCCccC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC  137 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C  137 (188)
                      |.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4444444444444444444444444444444444443

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=2.7e-10  Score=58.78  Aligned_cols=41  Identities=15%  Similarity=0.305  Sum_probs=37.8

Q ss_pred             HhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCCCc
Q psy13443        127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGGEE  167 (188)
Q Consensus       127 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  167 (188)
                      ++|.+++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            35788999999999999999999999999999999999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=60.93  Aligned_cols=44  Identities=9%  Similarity=0.083  Sum_probs=39.1

Q ss_pred             HHhhccCCCccccC--CCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          4 HVRTHLAKQQFECD--FCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         4 h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      |.++|++++||.|.  .|++.|.....|..|++.+.++++|.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56789999999998  899999999999999977667778998876

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=59.86  Aligned_cols=42  Identities=12%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCC
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCV   45 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~   45 (188)
                      +.++|++++||.|++|++.|.....|..|++.+.++++|.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            457899999999999999999999999999777677778886

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.3e-11  Score=70.83  Aligned_cols=64  Identities=20%  Similarity=0.332  Sum_probs=47.8

Q ss_pred             HHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443         94 MRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus        94 l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      |..|+.++.+.+++.|..|+..|. ...|..|+ .+.+++|+.|+.|++.|. ...|..|++.+.+.
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            455666777778888888888874 77778887 777788888888888766 47778887766544

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.6e-10  Score=58.13  Aligned_cols=39  Identities=23%  Similarity=0.364  Sum_probs=36.3

Q ss_pred             HhhcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCC
Q psy13443        127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG  165 (188)
Q Consensus       127 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  165 (188)
                      ++|.+++||.|+.|++.|.....|..|++.|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            357889999999999999999999999999999999986

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.4e-09  Score=61.06  Aligned_cols=42  Identities=19%  Similarity=0.119  Sum_probs=33.8

Q ss_pred             hcCCCCccCCC--CcccccCcHHHHHHH-HHhcCCCCCCCCcchh
Q psy13443        129 HTGEKPHACGM--CGYECAQGSQLMQHL-RKVHKVDKKGGEEEEE  170 (188)
Q Consensus       129 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~h~~~~~~~~~~~~  170 (188)
                      ..+++||+|..  |+++|.....|..|+ ++|.+++|+.|.+.++
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~~   66 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEE   66 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccccc
Confidence            45788999965  999999999999997 5788888888876553

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.83  E-value=3e-09  Score=53.41  Aligned_cols=31  Identities=23%  Similarity=0.613  Sum_probs=12.3

Q ss_pred             CceecccCccccCCchhHHHHHHhhcCCCCc
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      ++|.|.+|++.|.....|..|+++|.+++||
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCccc
Confidence            3344444444444444444444444333333

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.4e-09  Score=53.95  Aligned_cols=34  Identities=12%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             hhcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        128 RHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       128 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +|.+++||.|..|++.|.....|..|++.|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            4556666666666666666666666666666544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.83  E-value=1.2e-09  Score=54.27  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |+++|.+++||+|+.|++.|.....|..|++.|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            34556666666666666666666666666665543

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=1.2e-09  Score=65.51  Aligned_cols=59  Identities=10%  Similarity=0.186  Sum_probs=47.2

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC-cccccccccccc
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ-FEVVPTRKTQTL   61 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~-~~~~~~~~~~~~   61 (188)
                      .+.++|++++||.|+.|++.|.....|..|++.+.+++||.|..|.. .....+.+.+.+
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCCCCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhHHHHHhhhccccc
Confidence            34567999999999999999999999999997777778899988876 444444444444

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.82  E-value=2.3e-09  Score=53.12  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhh
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQI   36 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   36 (188)
                      .|+++|++++||.|+.|++.|.....|..|++.+
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            3788999999999999999999999999998544

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.82  E-value=3.4e-09  Score=53.25  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=33.5

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcCCCCCCC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG  165 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  165 (188)
                      |.+++||.|..|++.|.....|..|++.|.++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4678999999999999999999999999999998864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.79  E-value=4.1e-09  Score=51.43  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      |.+++||.|..|++.|.....|..|++.|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            445666666666666666666666666665543

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4.6e-09  Score=52.00  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             HhhccCCCccccCCCcccccCHHHHHHHHHhhhcCC
Q psy13443          5 VRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGV   40 (188)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   40 (188)
                      +++|++++||.|+.|++.|.....|..|++.+++++
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            357899999999999999999999999996665543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.74  E-value=5.7e-09  Score=50.95  Aligned_cols=32  Identities=19%  Similarity=0.486  Sum_probs=16.9

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      |.+++||.|..|++.|.....|..|++.|++.
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            34455555555555555555555555555443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.72  E-value=1e-08  Score=49.92  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=20.7

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcCCC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK  133 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  133 (188)
                      |.++++|.|.+|++.|.....|..|+++|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            455566666666666666666666666666554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.72  E-value=1.1e-08  Score=49.85  Aligned_cols=33  Identities=27%  Similarity=0.638  Sum_probs=21.4

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcCCC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK  133 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~  133 (188)
                      |.++++|.|.+|++.|.....|..|+++|.+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            455666666666666666666666666666554

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=1.3e-08  Score=57.10  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=26.7

Q ss_pred             CCCceeecCC--CCCCCCCHHHHHHHH-HhcCCCCceeccc
Q psy13443         74 DASYTYMCYL--CNYHTPTRKYMRTHI-DTHNGEKPFRCAL  111 (188)
Q Consensus        74 ~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~  111 (188)
                      .+++||.|..  |+++|...+.|..|+ ++|++++||.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            5667777754  777777777777776 5677777777653

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=4.6e-09  Score=60.97  Aligned_cols=47  Identities=15%  Similarity=0.257  Sum_probs=38.4

Q ss_pred             ChhHHhhccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCC
Q psy13443          1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQ   49 (188)
Q Consensus         1 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~   49 (188)
                      |..|++++.+.+|+.|..|++.|. ...|..|. .+.+.+++.|+.|++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~   51 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGR   51 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCC
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCC
Confidence            567999999999999999999995 99999998 666666555555555

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.69  E-value=2.2e-08  Score=48.22  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=17.8

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcCCCCC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHKVDKK  163 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  163 (188)
                      ||.|+.|++.|.....|..|++.|.+++++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            455666666666666666666655555554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.68  E-value=1.8e-08  Score=48.56  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=15.8

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCce
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPF  107 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  107 (188)
                      ||.|+.|++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            445555555555555555555555555444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.7e-08  Score=50.35  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             hcCCCCccCCC--CcccccCcHHHHHHHHHhcCC
Q psy13443        129 HTGEKPHACGM--CGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       129 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      +.+++||+|+.  |+++|.....|..|+++|.+.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34566666664  677776666677776666543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.64  E-value=1.8e-08  Score=49.54  Aligned_cols=32  Identities=22%  Similarity=0.488  Sum_probs=28.4

Q ss_pred             ccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCC
Q psy13443          8 HLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVH   46 (188)
Q Consensus         8 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~   46 (188)
                      +.+++||.|+.|+++|....+|..|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            57899999999999999999999997       677754

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=3e-09  Score=63.73  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCc
Q psy13443         74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCA  113 (188)
Q Consensus        74 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  113 (188)
                      .++++|.|..|++.|.....|..|+++|+++++|.|..|.
T Consensus        21 ~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           21 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             CCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            4445555555555555555555555555555555554433

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.2e-08  Score=49.45  Aligned_cols=32  Identities=16%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             hhcCCCCccCCCCcccccCc-HHHHHHHHHhcC
Q psy13443        128 RHTGEKPHACGMCGYECAQG-SQLMQHLRKVHK  159 (188)
Q Consensus       128 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~h~  159 (188)
                      +|.+++||.|+.|++.|... ..|..|++.|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            35556666666666666666 666666665554

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.1e-08  Score=48.53  Aligned_cols=31  Identities=35%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |.+++||.|..|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4555666666666666666666666666554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=3.5e-08  Score=49.04  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             cCCCCccCC--CCcccccCcHHHHHHHHHhcCCCCC
Q psy13443        130 TGEKPHACG--MCGYECAQGSQLMQHLRKVHKVDKK  163 (188)
Q Consensus       130 ~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  163 (188)
                      .+++||.|.  .|++.|.....|..|++.|.+.++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            345556666  3666666666666666655555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.1e-08  Score=50.61  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             hhcCCCCccCCCCcccccCcHHHHHH-HHHhc
Q psy13443        128 RHTGEKPHACGMCGYECAQGSQLMQH-LRKVH  158 (188)
Q Consensus       128 ~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h  158 (188)
                      +|.+++||+|+.|++.|.....|..| ++.|.
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            45666667777777777766677777 55554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.8e-08  Score=48.75  Aligned_cols=31  Identities=26%  Similarity=0.605  Sum_probs=19.6

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |.+++||+|..|++.|.....|..|++.|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4556666666666666666666666666543

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=2.5e-08  Score=49.35  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             HhhccCCCccccCCCcccccCHHHHHHH-HHhhhc
Q psy13443          5 VRTHLAKQQFECDFCPYGAKQAADVHNH-VQQIHM   38 (188)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~   38 (188)
                      +++|++++||.|+.|++.|.....|..| + ..|.
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~~H~   34 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVI-QKHS   34 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHH-HHTC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHH-HHcc
Confidence            3578999999999999999999999999 6 4443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=5.7e-08  Score=47.52  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |.+++||.|+.|++.|.....|..|++.|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            4556666666666666666666666666654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=5.1e-08  Score=48.38  Aligned_cols=35  Identities=26%  Similarity=0.467  Sum_probs=23.2

Q ss_pred             cCCCCceecc--cCccccCCchhHHHHHHhhcCCCCc
Q psy13443        101 HNGEKPFRCA--LCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus       101 h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      |+++++|.|.  .|++.|.....|..|+++|.+++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3456667776  4777777777777777777666654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=5.8e-08  Score=48.35  Aligned_cols=30  Identities=30%  Similarity=0.633  Sum_probs=15.8

Q ss_pred             CCCCceeccc--CccccCCchhHHHHHHhhcC
Q psy13443        102 NGEKPFRCAL--CAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       102 ~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~  131 (188)
                      ++++||.|+.  |++.|.....|..|+++|++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            4455555543  55555555555555555544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.7e-08  Score=48.80  Aligned_cols=30  Identities=10%  Similarity=0.122  Sum_probs=16.9

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |.+++||.|..|++.|.....|..|++.|.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            444555555555555555555555555544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=5.1e-08  Score=48.08  Aligned_cols=33  Identities=18%  Similarity=0.576  Sum_probs=24.6

Q ss_pred             hcCCCCceecccCccccCCc-hhHHHHHHhhcCC
Q psy13443        100 THNGEKPFRCALCAYSARRK-THLDDHMRRHTGE  132 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~-~~l~~H~~~h~~~  132 (188)
                      +|.++++|.|+.|++.|... ..|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            56677777777787777777 7777777777654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=6.5e-08  Score=47.33  Aligned_cols=33  Identities=39%  Similarity=0.931  Sum_probs=20.1

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  132 (188)
                      +|.++++|.|++|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            345556666666666666666666666666543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=7.3e-08  Score=47.18  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |.+++||.|+.|++.|.....|..|++.|++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            4455666666666666666666666666654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=8.7e-08  Score=46.83  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=16.5

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |.++++|.|.+|++.|.....|..|+++|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            3444555555555555555555555555544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=7.3e-08  Score=47.17  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=17.7

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |.++++|.|.+|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            4455555666666666555555555555544

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=8.6e-08  Score=46.91  Aligned_cols=31  Identities=45%  Similarity=1.004  Sum_probs=17.7

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |.++++|.|++|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4455555555555555555555555555544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.50  E-value=5.1e-08  Score=51.29  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=23.1

Q ss_pred             hhcCCCCccCCCCcccccCcHHHHHHHH-HhcCCC
Q psy13443        128 RHTGEKPHACGMCGYECAQGSQLMQHLR-KVHKVD  161 (188)
Q Consensus       128 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~  161 (188)
                      +|.+++||.|.+|++.|.....|..|++ .|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            3567777888888888888888888877 555433

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.6e-07  Score=45.91  Aligned_cols=31  Identities=32%  Similarity=0.545  Sum_probs=16.5

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |.++++|.|+.|++.|.....|..|+++|.+
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            3444555555555555555555555555544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.46  E-value=7.3e-08  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=8.7

Q ss_pred             CCCccCCCCcccccCcHHHHHH
Q psy13443        132 EKPHACGMCGYECAQGSQLMQH  153 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H  153 (188)
                      ++||.|+.|+++|.+.+.|..|
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H   27 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAH   27 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCc
Confidence            3333333333333333333333

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=50.08  Aligned_cols=33  Identities=24%  Similarity=0.629  Sum_probs=21.3

Q ss_pred             cCCCCceecccCccccCCchhHHHHHH-hhcCCC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMR-RHTGEK  133 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~  133 (188)
                      |+++++|.|.+|++.|.....|..|++ +|.++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            566667777777777777777777776 666543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.44  E-value=2.3e-07  Score=43.07  Aligned_cols=29  Identities=28%  Similarity=0.618  Sum_probs=20.9

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +||.|..|++.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            35777777777777777777777776554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.39  E-value=2.3e-07  Score=45.69  Aligned_cols=31  Identities=32%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             hcCCCCccCCC--CcccccCcHHHHHHHHHhcC
Q psy13443        129 HTGEKPHACGM--CGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       129 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |.+++||.|.+  |++.|...+.|..|++.|.+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            34556666653  66666666666666666554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.38  E-value=2.3e-07  Score=43.05  Aligned_cols=27  Identities=30%  Similarity=0.621  Sum_probs=17.1

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||.|..|++.|.....|..|++.|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            456666666666666666666665554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.37  E-value=3.9e-07  Score=41.93  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ||.|+.|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            56777777777777777777766654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.35  E-value=3.5e-07  Score=42.02  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=17.8

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      +||.|+.|++.|.....|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3566666666666666666666666543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.34  E-value=8.4e-08  Score=50.15  Aligned_cols=32  Identities=22%  Similarity=0.535  Sum_probs=15.3

Q ss_pred             hcCCCCceecc--cCccccCCchhHHHHHHhhcC
Q psy13443        100 THNGEKPFRCA--LCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       100 ~h~~~~~~~C~--~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      .|.++++|.|.  .|++.|.....|..|+++|.+
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            34444455553  355555555555555444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.34  E-value=2.9e-07  Score=42.41  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=14.5

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ||.|+.|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            45555555555555555555555543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.34  E-value=2.9e-07  Score=41.79  Aligned_cols=25  Identities=32%  Similarity=0.651  Sum_probs=16.8

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHh
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      +||.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5666777777777777777776654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.33  E-value=4.2e-07  Score=44.74  Aligned_cols=32  Identities=34%  Similarity=0.661  Sum_probs=17.5

Q ss_pred             cCCCCceeccc--CccccCCchhHHHHHHhhcCC
Q psy13443        101 HNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus       101 h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~  132 (188)
                      |+++++|.|.+  |++.|.....|..|+++|.++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34455555553  555555555555555555543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.33  E-value=1.2e-07  Score=49.59  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             hhHHhhccCCCccccC--CCcccccCHHHHHHHHHhhhc
Q psy13443          2 LRHVRTHLAKQQFECD--FCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus         2 ~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      ..|...|++++||.|.  .|++.|.....|..|++.+.+
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            4567789999999995  799999999999999865443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.31  E-value=7.9e-07  Score=49.90  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +.+++||+|..|++.|.....|..|+++|++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            345666777777777777777777777666543

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.31  E-value=5.1e-07  Score=41.82  Aligned_cols=28  Identities=21%  Similarity=0.470  Sum_probs=15.9

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      ++|.|..|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            3455666666666666666665555543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.31  E-value=4.4e-07  Score=41.72  Aligned_cols=26  Identities=31%  Similarity=0.593  Sum_probs=16.1

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            56666666666666666666666554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.30  E-value=2.6e-07  Score=42.29  Aligned_cols=26  Identities=27%  Similarity=0.599  Sum_probs=16.2

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      +||.|+.|++.|.....|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45666666666666666666665543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.30  E-value=5.6e-07  Score=41.41  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=13.7

Q ss_pred             ceecccCccccCCchhHHHHHHhhcC
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      +|.|+.|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            45555555555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.30  E-value=6.2e-07  Score=41.20  Aligned_cols=27  Identities=19%  Similarity=0.604  Sum_probs=16.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            455666666666666666666665543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.28  E-value=2.3e-08  Score=47.79  Aligned_cols=29  Identities=21%  Similarity=0.397  Sum_probs=15.3

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcCCCC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      ||.|..|++.|.....|..|++.|.++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            45555555555555555555555554444

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=8e-07  Score=42.00  Aligned_cols=27  Identities=19%  Similarity=0.541  Sum_probs=17.3

Q ss_pred             CCccCC--CCcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACG--MCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||.|.  .|++.|.....|..|+++|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            456666  566666666666666666554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.27  E-value=2.3e-07  Score=42.23  Aligned_cols=25  Identities=24%  Similarity=0.607  Sum_probs=15.6

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHh
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      +||+|+.|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4566666666666666666666543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.27  E-value=2.4e-08  Score=47.71  Aligned_cols=29  Identities=17%  Similarity=0.215  Sum_probs=14.7

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCc
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKP  106 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  106 (188)
                      ||.|..|++.|...+.|..|+++|+++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            34455555555555555555555554444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.25  E-value=8.9e-07  Score=40.94  Aligned_cols=27  Identities=15%  Similarity=0.677  Sum_probs=13.2

Q ss_pred             ceecccCccccCCchhHHHHHHhhcCC
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~h~~~  132 (188)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            344555555555555555555544443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=1.5e-06  Score=48.77  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=31.5

Q ss_pred             hccCCCccccCCCcccccCHHHHHHHHHhhhcCCcccCCCC
Q psy13443          7 THLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC   47 (188)
Q Consensus         7 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C   47 (188)
                      .+.+++||.|..|++.|.....|..|++. |.+....+..+
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~~~~~~~~   46 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQ-HGVTSLQLGYI   46 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHH-HTTTSCCCCSC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhh-hCCCccccccc
Confidence            46788999999999999999999999955 44444444444

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=8.3e-07  Score=40.69  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=14.7

Q ss_pred             ceecccCccccCCchhHHHHHHhhcC
Q psy13443        106 PFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      +|.|+.|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            45555555555555555555555544

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=7.6e-07  Score=40.85  Aligned_cols=26  Identities=23%  Similarity=0.526  Sum_probs=12.9

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +|.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            34455555555555555555554443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.23  E-value=1e-06  Score=41.33  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=16.8

Q ss_pred             eeecC--CCCCCCCCHHHHHHHHHhcCCC
Q psy13443         78 TYMCY--LCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      ||.|+  .|+++|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            45565  6666666666666666666554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.22  E-value=7.9e-07  Score=41.70  Aligned_cols=26  Identities=27%  Similarity=0.604  Sum_probs=15.9

Q ss_pred             CccCC--CCcccccCcHHHHHHHHHhcC
Q psy13443        134 PHACG--MCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       134 ~~~C~--~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ||.|+  .|++.|.....|..|++.|.+
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            56665  566666666666666665554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=1.6e-07  Score=43.45  Aligned_cols=26  Identities=38%  Similarity=0.729  Sum_probs=17.0

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ||.|..|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            56666666666666666666666554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=8.8e-07  Score=40.07  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=14.1

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhc
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTH  101 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h  101 (188)
                      ++|.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3455555555555555555555554

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.52  E-value=1.7e-07  Score=43.62  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=18.1

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||.|..|++.|.....|..|++.|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            466677777777777777777666654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=8.7e-07  Score=40.42  Aligned_cols=25  Identities=28%  Similarity=0.607  Sum_probs=14.4

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHN  102 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~  102 (188)
                      +|.|+.|++.|.....|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcC
Confidence            4555666666665555555555554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.20  E-value=1.2e-06  Score=41.32  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=13.9

Q ss_pred             eeecC--CCCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCY--LCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +|.|.  .|++.|.....|..|+++|++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            45555  455555555555555555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.20  E-value=1.1e-06  Score=39.59  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=17.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +|.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            35677777777777777777766654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.19  E-value=6.7e-07  Score=40.39  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=15.8

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhc
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      ||.|..|++.|.....|..|++.|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            4566666666666666666666554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.7e-07  Score=42.63  Aligned_cols=26  Identities=19%  Similarity=0.503  Sum_probs=14.9

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +|.|..|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            45555566666555555555555554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.44  E-value=2.7e-07  Score=41.46  Aligned_cols=25  Identities=44%  Similarity=0.767  Sum_probs=16.9

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHh
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      +||.|+.|++.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3566777777777777777776654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.14  E-value=8.4e-07  Score=40.23  Aligned_cols=24  Identities=33%  Similarity=0.700  Sum_probs=12.6

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhc
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTH  101 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h  101 (188)
                      ||.|..|++.|.....|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            455555555555555555555444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.12  E-value=1.3e-06  Score=40.47  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=15.9

Q ss_pred             CccCCCCcccccCcHHHHHH-HHHhc
Q psy13443        134 PHACGMCGYECAQGSQLMQH-LRKVH  158 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H-~~~~h  158 (188)
                      ||.|+.|++.|.+...|..| ++.|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHcc
Confidence            56666677777666666666 34443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.09  E-value=1.6e-06  Score=40.08  Aligned_cols=27  Identities=33%  Similarity=0.659  Sum_probs=15.8

Q ss_pred             eeecCCCCCCCCCHHHHHHH-HHhcCCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTH-IDTHNGE  104 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~  104 (188)
                      +|.|..|++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45566666666666666666 4555543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.37  E-value=4.2e-07  Score=42.19  Aligned_cols=26  Identities=23%  Similarity=0.632  Sum_probs=14.6

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +|.|..|++.|.....|..|+++|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            45555555555555555555555544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.25  E-value=8.1e-07  Score=39.79  Aligned_cols=24  Identities=25%  Similarity=0.539  Sum_probs=13.2

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhc
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTH  101 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h  101 (188)
                      ||.|..|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555544

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.92  E-value=4.3e-06  Score=38.20  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=14.6

Q ss_pred             CccCC--CCcccccCcHHHHHHHHHhc
Q psy13443        134 PHACG--MCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       134 ~~~C~--~C~~~f~~~~~l~~H~~~~h  158 (188)
                      ||.|.  .|++.|.....|..|++.|.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45566  66666666666666655543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.85  E-value=8.5e-06  Score=37.14  Aligned_cols=25  Identities=24%  Similarity=0.547  Sum_probs=13.6

Q ss_pred             eeecC--CCCCCCCCHHHHHHHHHhcC
Q psy13443         78 TYMCY--LCNYHTPTRKYMRTHIDTHN  102 (188)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~h~  102 (188)
                      +|.|.  .|++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            34555  55555555555555555543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.84  E-value=3.7e-05  Score=42.74  Aligned_cols=25  Identities=24%  Similarity=0.640  Sum_probs=14.5

Q ss_pred             CccCC--CCcccccCcHHHHHHHHHhc
Q psy13443        134 PHACG--MCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       134 ~~~C~--~C~~~f~~~~~l~~H~~~~h  158 (188)
                      +|.|.  .|+..+.....|..|++..|
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCEeeCCCCcCCCCChHHHHhhccccC
Confidence            45664  46666655566666665543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00023  Score=39.50  Aligned_cols=49  Identities=14%  Similarity=0.366  Sum_probs=42.1

Q ss_pred             cCCCCCCCCCHHHHHHHHH-hcCCCC------ceecc--cCccccCCchhHHHHHHhh
Q psy13443         81 CYLCNYHTPTRKYMRTHID-THNGEK------PFRCA--LCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus        81 C~~C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~~~~~~~l~~H~~~h  129 (188)
                      +..|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4569999999999999984 787665      79997  6999999999999999864

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.79  E-value=0.00028  Score=44.26  Aligned_cols=30  Identities=10%  Similarity=0.126  Sum_probs=27.0

Q ss_pred             HhhccCCCccccCCCcccccCHHHHHHHHH
Q psy13443          5 VRTHLAKQQFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus         5 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      ...|+|++||.|..|++.|.+...|..|++
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            345889999999999999999999999974

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.71  E-value=0.00026  Score=44.39  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=15.4

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHH
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      |+|++||.|..|++.|.+...|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            445555566666666666666655554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.45  E-value=0.0028  Score=42.31  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=59.0

Q ss_pred             eeec--CCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHH
Q psy13443         78 TYMC--YLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus        78 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      ...|  ..|+..+. ...+..|.. .-.-++..|+.|+..+ ....|..|.......++..|+.|+..+.. ..|..|..
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~  157 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQ  157 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHT
T ss_pred             ccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHH
Confidence            4556  56776554 456778874 3344678999999887 56678899988778888999999988855 57799998


Q ss_pred             HhcCCCCC
Q psy13443        156 KVHKVDKK  163 (188)
Q Consensus       156 ~~h~~~~~  163 (188)
                      .+.+..++
T Consensus       158 ~~~~~~~~  165 (170)
T 3hcs_A          158 NCPLALEH  165 (170)
T ss_dssp             TCCC----
T ss_pred             hCcChhhh
Confidence            77776654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.40  E-value=0.0042  Score=39.39  Aligned_cols=76  Identities=11%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             CceeecCCCCCCCCCHHHHHHHH--HhcCCC-Cceeccc------CccccCCchhHHHHHHhhcCCCCccCCCCcccccC
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHI--DTHNGE-KPFRCAL------CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQ  146 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-~~~~C~~------C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  146 (188)
                      ..++.|.+|+..|.+.+.+..|.  +.|... +.+.+..      =+..+....    +.....+...|-|..|...|.+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCC
Confidence            35689999999999999999998  455421 2222211      011221111    1123445677899999999999


Q ss_pred             cHHHHHHHH
Q psy13443        147 GSQLMQHLR  155 (188)
Q Consensus       147 ~~~l~~H~~  155 (188)
                      ...+..|+.
T Consensus       106 ~~~~~~H~~  114 (127)
T 1zu1_A          106 PVVAESHYI  114 (127)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999999984

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.37  E-value=0.0034  Score=39.83  Aligned_cols=80  Identities=6%  Similarity=0.087  Sum_probs=44.8

Q ss_pred             CcccCCCCCC-cccccccccccccc-c-cccccccc-CCCCceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccc
Q psy13443         40 VNFVCVHCKQ-FEVVPTRKTQTLEH-C-ATCVDMVR-PDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYS  115 (188)
Q Consensus        40 ~~~~C~~C~~-~~~~~~~~~~~~~~-c-~~c~~~~~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  115 (188)
                      .++.|..|+. |.+...+..|.... . ........ .....    +.-+..+....    +...+.+.+.|.|.+|...
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~  102 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGED----SVPAKKFKAAP----AEISDGEDRSKCCPVCNMT  102 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCC----CCSCCCCSCCS----SCCSSCCCTTTEETTTTEE
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCccc----CCCCCccCCCc----cccccCCCCCeEcCCCCCE
Confidence            4489999999 88888888888641 0 00000000 00000    00011221110    1123455677899999999


Q ss_pred             cCCchhHHHHHH
Q psy13443        116 ARRKTHLDDHMR  127 (188)
Q Consensus       116 ~~~~~~l~~H~~  127 (188)
                      |.+...+..|..
T Consensus       103 f~s~~~~~~H~~  114 (127)
T 1zu1_A          103 FSSPVVAESHYI  114 (127)
T ss_dssp             CSSHHHHHHHHT
T ss_pred             eCCHHHHHHHHC
Confidence            999999988875

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.17  E-value=0.0055  Score=31.04  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=11.0

Q ss_pred             ceecccCccccCCchhHHHHHH
Q psy13443        106 PFRCALCAYSARRKTHLDDHMR  127 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~  127 (188)
                      +|.|+.|+..|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3445555555555555555544

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.97  E-value=0.009  Score=30.25  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=21.6

Q ss_pred             CccccCCCcccccCHHHHHHHHH
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      .+|.|+.|+..|.....|..|+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            67999999999999999999995

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.92  E-value=0.0071  Score=28.61  Aligned_cols=27  Identities=22%  Similarity=0.464  Sum_probs=22.9

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      .|.|+.|.+.|.+...|..|.+..|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            478999999999999999999888754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.75  E-value=0.0039  Score=41.60  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=43.7

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhhcCCCCc
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      .+..|+.|+..+ ....|..|....-..+...|+.|+..+.. ..+..|..++.|+.++
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            457899999877 56789999987777788899999988755 5678999988876653

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.19  E-value=0.046  Score=25.79  Aligned_cols=28  Identities=21%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             CccccCCCcccccCHHHHHHHHHhhhcC
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQQIHMG   39 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~   39 (188)
                      ..|.|++|-+.|.+...|..|....|..
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            3599999999999999999999877753

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=92.63  E-value=0.19  Score=23.78  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.4

Q ss_pred             CCccccCCCcccccCHHHHHHHHH
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      ...+.|..|+.+|.....+..|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            457899999999999999999974

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=91.55  E-value=0.17  Score=23.15  Aligned_cols=24  Identities=21%  Similarity=0.577  Sum_probs=21.2

Q ss_pred             cccCCCcccccCHHHHHHHHHhhh
Q psy13443         14 FECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      -.|..|.+.|.+..+|..|++..|
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            479999999999999999996555

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.42  E-value=0.1  Score=29.61  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=32.3

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhhcCCcccCCCCCCccccccccccc
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQT   60 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~~~~~   60 (188)
                      .|.|+.|+.++. +..|..|+.+-.+...|.|..|++.+.....+.|.
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~Ht   56 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHV   56 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCC
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCCCCEeCEe
Confidence            489999998765 66788997544433458999998833344455554

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=91.09  E-value=0.65  Score=24.16  Aligned_cols=47  Identities=21%  Similarity=0.401  Sum_probs=35.6

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCccCCCCc-ccccCcHHHHHHHHH
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCG-YECAQGSQLMQHLRK  156 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~  156 (188)
                      -.|.+|...-.....|..|......+   +|++|- ..-.+.+.|+.|.+.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHHHH
Confidence            36888888888888899998887543   677775 445678899988754

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.32  E-value=0.39  Score=22.72  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=12.8

Q ss_pred             eeecCCCCCCCCCHHHHHHHHH
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHID   99 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (188)
                      .+.|..|+-.|.....+.+|.+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhe
Confidence            4556666666666666666544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=89.71  E-value=0.3  Score=27.77  Aligned_cols=42  Identities=12%  Similarity=0.293  Sum_probs=28.6

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCC
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR  118 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~  118 (188)
                      ...|.|..|+.++. +..+..|...-.+-..|.|..|+..|..
T Consensus         8 MV~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A            8 MVFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             CCEEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             eeEEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC
Confidence            44578888886665 4467777665544446788888888865

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.66  E-value=0.25  Score=24.91  Aligned_cols=8  Identities=25%  Similarity=0.891  Sum_probs=3.5

Q ss_pred             ccCCCCCC
Q psy13443         42 FVCVHCKQ   49 (188)
Q Consensus        42 ~~C~~C~~   49 (188)
                      |.|--||+
T Consensus         4 Y~C~rCg~   11 (48)
T 4ayb_P            4 YRCGKCWK   11 (48)
T ss_dssp             -CCCCTTT
T ss_pred             EEeeccCC
Confidence            44555555

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.96  E-value=0.23  Score=28.86  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=14.5

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +.|-+||+.|.+   |.+|+..+|+..
T Consensus        22 iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             eEecccchhhHH---HHHHHHHccCCC
Confidence            566666666653   556666666543

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=87.75  E-value=0.086  Score=29.92  Aligned_cols=17  Identities=12%  Similarity=0.348  Sum_probs=10.2

Q ss_pred             ecCCCCCCCCCHHHHHH
Q psy13443         80 MCYLCNYHTPTRKYMRT   96 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~   96 (188)
                      .|++||........+.+
T Consensus        10 ~~PlCG~~L~W~eLIeQ   26 (95)
T 2k5c_A           10 KCPICGSPLKWEELIEE   26 (95)
T ss_dssp             ECSSSCCEECHHHHHHH
T ss_pred             cCCcCCCccCHHHHHHH
Confidence            57777776665544433

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=86.92  E-value=0.36  Score=29.11  Aligned_cols=11  Identities=27%  Similarity=0.890  Sum_probs=6.2

Q ss_pred             ceecccCcccc
Q psy13443        106 PFRCALCAYSA  116 (188)
Q Consensus       106 ~~~C~~C~~~~  116 (188)
                      +|.|..||..|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            45555555555

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=86.42  E-value=0.53  Score=21.03  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=13.8

Q ss_pred             ccCCCCcccccCcHHHHHHHH
Q psy13443        135 HACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      +.|++|.........|..|.+
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            566677766666666666654

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=85.70  E-value=0.31  Score=24.69  Aligned_cols=12  Identities=25%  Similarity=0.916  Sum_probs=7.8

Q ss_pred             ceecccCccccC
Q psy13443        106 PFRCALCAYSAR  117 (188)
Q Consensus       106 ~~~C~~C~~~~~  117 (188)
                      .|+|.+||..|.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            466777776665

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=84.85  E-value=0.35  Score=25.17  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=20.2

Q ss_pred             CCc-cccCCCcccccCHHHHHHHHH
Q psy13443         11 KQQ-FECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        11 ~~~-~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      +.| -.|..|+..|..+.++..|+.
T Consensus        10 ~~P~~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           10 DGTKPECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             CCCCSCCTTTTCCCCSSSCHHHHHT
T ss_pred             CCCCccccccCcccccccchhhhhc
Confidence            344 689999999999999999973

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=84.56  E-value=0.43  Score=32.65  Aligned_cols=25  Identities=28%  Similarity=0.638  Sum_probs=17.2

Q ss_pred             CceecccCccccCCchhHHHHHHhhcCCCCccCCCCcc
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGY  142 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  142 (188)
                      ..|.|.+||..+..             ..|..||.|+.
T Consensus       170 ~~~~C~~CG~i~~g-------------~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHKG-------------EDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEES-------------SCCSBCTTTCC
T ss_pred             cEEEECCCCCEEcC-------------cCCCCCCCCCC
Confidence            45788888877652             35678888874

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.47  E-value=1.1  Score=24.33  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=17.2

Q ss_pred             CceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccc
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYEC  144 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f  144 (188)
                      ..|.|..|+..+...           ...+++|+.||...
T Consensus        20 v~Y~C~~Cg~~~~l~-----------~~~~iRC~~CG~RI   48 (63)
T 3h0g_L           20 MIYLCADCGARNTIQ-----------AKEVIRCRECGHRV   48 (63)
T ss_dssp             CCCBCSSSCCBCCCC-----------SSSCCCCSSSCCCC
T ss_pred             eEEECCCCCCeeecC-----------CCCceECCCCCcEE
Confidence            457777777666533           13456777777553

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.05  E-value=0.5  Score=26.77  Aligned_cols=26  Identities=27%  Similarity=0.732  Sum_probs=18.2

Q ss_pred             ccCCCCccccc-------CcHHHHHHHHHhcCC
Q psy13443        135 HACGMCGYECA-------QGSQLMQHLRKVHKV  160 (188)
Q Consensus       135 ~~C~~C~~~f~-------~~~~l~~H~~~~h~~  160 (188)
                      -.|.+|++.+.       ..+.|.+|++..|+.
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            35666666655       357899999988853

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=81.82  E-value=0.75  Score=30.52  Aligned_cols=12  Identities=33%  Similarity=1.032  Sum_probs=7.2

Q ss_pred             ceecccCccccC
Q psy13443        106 PFRCALCAYSAR  117 (188)
Q Consensus       106 ~~~C~~C~~~~~  117 (188)
                      .|.|++||..+.
T Consensus       138 ~~~C~~CG~i~~  149 (170)
T 3pwf_A          138 VYICPICGYTAV  149 (170)
T ss_dssp             EEECTTTCCEEE
T ss_pred             eeEeCCCCCeeC
Confidence            466666666554

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=80.69  E-value=1.2  Score=30.39  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             CCCccCCCCcccccC-cHHHHHHHHHhc
Q psy13443        132 EKPHACGMCGYECAQ-GSQLMQHLRKVH  158 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~-~~~l~~H~~~~h  158 (188)
                      ..|++|..|+..|.+ ...|+.|+..+-
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e~  194 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEEY  194 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHHH
Confidence            457899999999987 899999987653

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=80.20  E-value=1.4  Score=27.42  Aligned_cols=27  Identities=11%  Similarity=0.164  Sum_probs=16.4

Q ss_pred             CceecccCccccCCchhHHHHHHhhcC
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      .+..|-.|...|.+...+..|++..++
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcC
Confidence            345666666666666666666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	4e-08
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	7e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	2e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	3e-05
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	5e-06
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	8e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-05
d2dmda3	29	g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {	4e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	5e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.003
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	7e-05
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	8e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-04
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	0.002
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.003

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (108), Expect = 4e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 104 EKPFRCALCAYSARRKTHLDDHMRR-HTGEKPHAC 137
            KP+ C  C     R  HL+ H+++ HT E+PH C
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 7e-04
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 130 TGEKPHACGMCGYECAQGSQLMQHLRKVH 158
           +  KP+ C  CG   ++   L  H+++VH
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
           H+GEKP+ C  C  +  R + L  H R HTGE
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (85), Expect = 7e-05
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 129 HTGEKPHACGMCGYECAQGSQLMQHLR 155
           H+GEKP+ C  CG   ++ S L+QH R
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQR 28

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
           TH GEKP+ C+ C  + R+K  LD H +R+    
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
           R HTGEKP+AC  C     Q   L  H ++ H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (97), Expect = 1e-06
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
           TH+GEKP+ C +C     +   +  H+ +   E 
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 4e-06
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
           R H+GEKP+ C +C     Q   +  H+ + H
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 97  HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
                   + ++C  C  S    + L  H R HTGE
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
              +    + + C  CG   +  S L +H R
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 39.5 bits (93), Expect = 5e-06
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
           + F C +C  +  R+ HL  H R HT EK
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 8e-06
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
           K F C  C     R  HL  H++ H  +K
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (91), Expect = 1e-05
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
             R  TG KP  C  C    ++   L  H ++
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 97  HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG 131
                 G KPF+C  C  S  R  HL  H +RH  
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
           +K + C  C  S   K+  D HM  H G +P+ CG+CG +      L+ H++
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGE 132
           E+PF+C +C Y++R  + L  H+R HTG+
Sbjct: 1   ERPFKCQICPYASRNSSQLTVHLRSHTGD 29

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 5e-05
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
            +G++PF C +C  +   K +   H++ HT  
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.6 bits (72), Expect = 0.003
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 129 HTGEKPHACGMCGYECAQGSQLMQHLR 155
            +G++P  C +C       +   +HL+
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLK 28

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 7e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 109 CALCAYSARRKTHLDDHMRRHTGEKPHAC 137
              C  S   K HL +HM+ H+  + + C
Sbjct: 6   EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (84), Expect = 8e-05
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTG 131
           +KPF+C +C  +  R  HL  H+R HTG
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 105 KPFRCAL--CAYSARRKTHLDDHMRRHTGEK 133
           +PF C    C     R   L  H R HTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 105 KPFRC--ALCAYSARRKTHLDDHMRRHTGE 132
           KP +C    C  S  R  +L  H+R HTGE
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.2 bits (73), Expect = 0.003
 Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 91  RKYMRTHIDTHNGEKPFRCALCAYSAR--RKTHLDDHMRRHTGEK 133
           R  +  ++     +K F C     +    R+ ++  H++ H  ++
Sbjct: 4   RGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.67
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.27
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.25
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.25
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.24
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.24
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.22
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.21
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.21
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.09
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.06
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.03
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.03
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.99
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.98
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.97
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.95
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.87
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.85
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.84
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.83
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.78
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.72
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.69
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.67
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.6
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.59
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.52
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.45
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.4
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.33
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.27
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.15
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.02
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.02
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.98
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.92
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.8
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.75
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.73
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.73
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.71
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.7
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.67
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.66
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.66
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.64
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.63
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.6
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.59
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.49
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.46
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.36
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.35
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.35
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.3
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.3
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.3
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.14
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.01
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.01
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.83
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.81
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.79
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.7
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.6
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.46
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.42
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.39
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.33
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.29
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.09
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.02
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.95
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.83
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.68
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.31
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.21
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.2
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.77
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.57
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.52
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.49
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.26
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.73
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.22
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.08
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.06
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	92.54
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.47
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.36
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.03
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	91.84
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.58
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	91.49
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.87
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.56
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	89.97
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.95
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	88.93
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	88.11
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	86.8
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	85.37
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	82.07
d1fu9a_	36	U-shaped transcription factor, different fingers {	80.29

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=89.80  Aligned_cols=52  Identities=33%  Similarity=0.685  Sum_probs=31.7

Q ss_pred             CceecccCccccCCchhHHHHHHhhcCCCCccCCCCcccccCcHHHHHHHHHh
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      |||.|. ||+.|.....|..|+++|++++||.|..|+++|.+.+.|..|+++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            556663 6666666666666666666666666666666666666666665543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.3e-17  Score=87.81  Aligned_cols=53  Identities=28%  Similarity=0.612  Sum_probs=50.7

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccccCCchhHHHHHHhh
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      ++||.| .||++|.....|..|+++|++++||.|++|+++|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            478999 59999999999999999999999999999999999999999999886

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-12  Score=63.80  Aligned_cols=33  Identities=42%  Similarity=0.969  Sum_probs=13.5

Q ss_pred             CceecccCccccCCchhHHHHHH-hhcCCCCccC
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMR-RHTGEKPHAC  137 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~-~h~~~~~~~C  137 (188)
                      |||.|..||+.|.....|..|++ +|++++||+|
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            34444444444444444444432 3444444443

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-12  Score=63.64  Aligned_cols=37  Identities=24%  Similarity=0.625  Sum_probs=34.1

Q ss_pred             CCceeecCCCCCCCCCHHHHHHHHH-hcCCCCceeccc
Q psy13443         75 ASYTYMCYLCNYHTPTRKYMRTHID-THNGEKPFRCAL  111 (188)
Q Consensus        75 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~  111 (188)
                      .++||.|.+|+++|.....|..|++ +|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999986 799999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.7e-13  Score=64.98  Aligned_cols=35  Identities=17%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             hHHhhccCCCccccCCCcccccCHHHHHHHHHhhh
Q psy13443          3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus         3 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      +|+++|++++||.|+.|+++|...++|..|++.+.
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            68999999999999999999999999999985443

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-12  Score=62.68  Aligned_cols=34  Identities=41%  Similarity=0.686  Sum_probs=24.3

Q ss_pred             HhhcCCCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       127 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      ++|+|++||+|..|+++|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4577777777777777777777777777777643

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2e-12  Score=62.26  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=31.2

Q ss_pred             hhccCCCccccCCCcccccCHHHHHHHHHhhhcC
Q psy13443          6 RTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMG   39 (188)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   39 (188)
                      ++|+|++||.|++|++.|....+|..|++.+|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            5899999999999999999999999998777764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.9e-13  Score=65.16  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=19.2

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |+++|++++||.|+.|+++|...+.|..|+++|.+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            44455555555555555555555555555555543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.7e-12  Score=60.27  Aligned_cols=31  Identities=42%  Similarity=0.686  Sum_probs=17.8

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      |++++||+|..|+++|...+.|..|+++|.+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            5555555555555555555555555555543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.7e-12  Score=61.76  Aligned_cols=34  Identities=32%  Similarity=0.622  Sum_probs=27.7

Q ss_pred             HhhcCCCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       127 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      ++|+|++||+|++|++.|.....|..|++.+|+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4688888888888888888888888888777754

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.6e-12  Score=61.04  Aligned_cols=33  Identities=24%  Similarity=0.500  Sum_probs=29.9

Q ss_pred             hhccCCCccccCCCcccccCHHHHHHHHHhhhc
Q psy13443          6 RTHLAKQQFECDFCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus         6 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      |+|+|++||+|++|+++|....+|..|++.++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            689999999999999999999999999965543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.6e-12  Score=59.42  Aligned_cols=33  Identities=45%  Similarity=0.820  Sum_probs=25.5

Q ss_pred             hcCCCCceecccCccccCCchhHHHHHHhhcCC
Q psy13443        100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus       100 ~h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~  132 (188)
                      +|++++||.|..|+++|...+.|..|+++|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            467778888888888888888888888877764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.7e-12  Score=61.81  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             HHhhccCCCccccCCCcccccCHHHHHHHHHhhhc
Q psy13443          4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus         4 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      |.|+|+|++||.|++|+++|....+|..|+ +.|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~-r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHH-GGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHH-hcCc
Confidence            789999999999999999999999999998 4553

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.9e-12  Score=62.86  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=23.5

Q ss_pred             HHHhhcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       125 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |.++|+|++||+|+.|+++|...+.|..|+++|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            4566777777777777777777777777776653

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.4e-11  Score=57.70  Aligned_cols=30  Identities=20%  Similarity=0.513  Sum_probs=16.4

Q ss_pred             hcCCCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        129 HTGEKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       129 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |+|++||+|.+|++.|.....|..|+++|.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            345555555555555555555555555543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.9e-11  Score=53.93  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=17.3

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ++||+|+.|+++|.....|..|+++|.|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3566666666666666666666666543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.5e-11  Score=56.18  Aligned_cols=31  Identities=29%  Similarity=0.702  Sum_probs=19.3

Q ss_pred             cCCCCceecccCccccCCchhHHHHHHhhcC
Q psy13443        101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       101 h~~~~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |+|++||.|.+|++.|....+|..|+++|++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            4566666666666666666666666666654

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.03  E-value=9.1e-11  Score=53.33  Aligned_cols=27  Identities=19%  Similarity=0.604  Sum_probs=16.3

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      ||.|++|+++|...+.|..|+++|+|+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            555666666666666666666666554

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.03  E-value=9.4e-11  Score=53.29  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=15.9

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      +||+|++|+++|...+.|..|+++|.++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            3555555555555555555555555544

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.6e-10  Score=52.39  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=16.6

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      +||.|++|+++|...+.|..|+++|.++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            3566666666666666666666665544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.1e-10  Score=52.48  Aligned_cols=26  Identities=46%  Similarity=0.982  Sum_probs=13.8

Q ss_pred             CceecccCccccCCchhHHHHHHhhc
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~  130 (188)
                      |||.|++|++.|.....|..|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            45555555555555555555555554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.8e-10  Score=52.20  Aligned_cols=27  Identities=22%  Similarity=0.451  Sum_probs=13.5

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      ||.|++|+++|...+.|..|+++|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            444555555555555555555555443

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-10  Score=55.02  Aligned_cols=32  Identities=34%  Similarity=0.700  Sum_probs=16.7

Q ss_pred             eeccc--CccccCCchhHHHHHHhhcCCCCccCC
Q psy13443        107 FRCAL--CAYSARRKTHLDDHMRRHTGEKPHACG  138 (188)
Q Consensus       107 ~~C~~--C~~~~~~~~~l~~H~~~h~~~~~~~C~  138 (188)
                      |.|+.  |++.|.....|..|+++|+|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            34443  555555555555555555555555553

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-10  Score=50.44  Aligned_cols=25  Identities=40%  Similarity=0.615  Sum_probs=17.9

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHh
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      +||+|..||++|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            4677777777777777777777766

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5e-10  Score=53.48  Aligned_cols=32  Identities=19%  Similarity=0.558  Sum_probs=29.9

Q ss_pred             eecCC--CCCCCCCHHHHHHHHHhcCCCCceecc
Q psy13443         79 YMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCA  110 (188)
Q Consensus        79 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~  110 (188)
                      |.|+.  |+++|.....|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67765  999999999999999999999999996

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=8.6e-11  Score=59.88  Aligned_cols=32  Identities=22%  Similarity=0.628  Sum_probs=17.3

Q ss_pred             cCCCCceeccc--CccccCCchhHHHHHHhhcCC
Q psy13443        101 HNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus       101 h~~~~~~~C~~--C~~~~~~~~~l~~H~~~h~~~  132 (188)
                      |.+++||.|.+  |++.|...+.|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            55555555544  555555555555555555544

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.4e-10  Score=48.84  Aligned_cols=24  Identities=21%  Similarity=0.402  Sum_probs=13.5

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhc
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTH  101 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h  101 (188)
                      ||.|..||++|...+.|..|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            455555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=2.8e-10  Score=57.95  Aligned_cols=40  Identities=13%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             hHHHHHHhhcCCCCccCCC--CcccccCcHHHHHHHHHhcCCC
Q psy13443        121 HLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       121 ~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      .+..|+. |.+++||.|.+  |+++|...+.|..|+++|.+++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3445554 78888888876  8888888888888888887754

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.8e-09  Score=48.50  Aligned_cols=27  Identities=33%  Similarity=0.613  Sum_probs=17.1

Q ss_pred             CCccCCC--CcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||+|++  |+++|...+.|..|+++|.+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            4566665  66666666666666666654

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.7e-09  Score=48.17  Aligned_cols=27  Identities=30%  Similarity=0.555  Sum_probs=15.8

Q ss_pred             CCccCCC--CcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||.|++  |+++|...+.|..|+++|.+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            3556654  66666666666666665554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.2e-09  Score=47.10  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=13.7

Q ss_pred             eeecCC--CCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCYL--CNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~~--C~~~f~~~~~l~~H~~~h~~  103 (188)
                      ||.|+.  |+++|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            445544  55555555555555555554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.9e-09  Score=47.48  Aligned_cols=27  Identities=41%  Similarity=0.822  Sum_probs=14.7

Q ss_pred             Cceeccc--CccccCCchhHHHHHHhhcC
Q psy13443        105 KPFRCAL--CAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       105 ~~~~C~~--C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |||.|+.  |+++|.....|..|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            3455544  55555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.7e-08  Score=46.31  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=14.9

Q ss_pred             eeecC--CCCCCCCCHHHHHHHHHhcCCC
Q psy13443         78 TYMCY--LCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      ||.|+  .|+++|...+.|..|+++|+++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            45553  3555555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.5e-08  Score=46.50  Aligned_cols=27  Identities=26%  Similarity=0.559  Sum_probs=14.3

Q ss_pred             CccCC--CCcccccCcHHHHHHHHHhcCC
Q psy13443        134 PHACG--MCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       134 ~~~C~--~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      ||.|+  .|+++|...+.|..|+++|.++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            45553  3555555555555555555443

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.4e-08  Score=45.70  Aligned_cols=27  Identities=26%  Similarity=0.609  Sum_probs=17.3

Q ss_pred             CCccCCC--CcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||+|++  |+++|.....|..|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4666655  66666666666666666643

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=4.1e-08  Score=45.21  Aligned_cols=27  Identities=19%  Similarity=0.587  Sum_probs=15.8

Q ss_pred             CCCccCCC--CcccccCcHHHHHHHHHhc
Q psy13443        132 EKPHACGM--CGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       132 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h  158 (188)
                      ++||.|++  |+++|.....|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            35566655  6666666666666665554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.6e-08  Score=43.84  Aligned_cols=25  Identities=28%  Similarity=0.602  Sum_probs=14.4

Q ss_pred             CCccCCC--CcccccCcHHHHHHHHHh
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~~~~  157 (188)
                      +||.|++  |+++|.....|..|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3555555  666666666666665554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=5.1e-08  Score=43.81  Aligned_cols=26  Identities=35%  Similarity=0.819  Sum_probs=13.8

Q ss_pred             Cceeccc--CccccCCchhHHHHHHhhc
Q psy13443        105 KPFRCAL--CAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus       105 ~~~~C~~--C~~~~~~~~~l~~H~~~h~  130 (188)
                      |||.|+.  |++.|.....|..|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            3455544  5555555555555555554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.4e-07  Score=43.40  Aligned_cols=26  Identities=27%  Similarity=0.629  Sum_probs=15.4

Q ss_pred             Cceeccc--CccccCCchhHHHHHHhhc
Q psy13443        105 KPFRCAL--CAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus       105 ~~~~C~~--C~~~~~~~~~l~~H~~~h~  130 (188)
                      +||.|+.  |++.|.....|..|+++|.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4556655  6666666666666666554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-07  Score=42.09  Aligned_cols=26  Identities=27%  Similarity=0.724  Sum_probs=17.5

Q ss_pred             Cceeccc--CccccCCchhHHHHHHhhc
Q psy13443        105 KPFRCAL--CAYSARRKTHLDDHMRRHT  130 (188)
Q Consensus       105 ~~~~C~~--C~~~~~~~~~l~~H~~~h~  130 (188)
                      +||.|+.  |+++|....+|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4666765  7777777777777776663

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2e-07  Score=39.54  Aligned_cols=28  Identities=39%  Similarity=0.749  Sum_probs=19.7

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ++||+|..|.++-.+.++|..|+|.|.+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3567777777777777777777776665

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.5e-07  Score=39.06  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=20.2

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      ++||.|++|...|..+.-+..|.+.|-+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46777777777777777777777766543

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.6e-07  Score=37.45  Aligned_cols=25  Identities=32%  Similarity=0.696  Sum_probs=15.1

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhc
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |.+|+.|++.|+.+..|..|+|.|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3456666666666666666666554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=7.6e-07  Score=39.53  Aligned_cols=29  Identities=38%  Similarity=0.699  Sum_probs=16.1

Q ss_pred             eecccCccccCCchhHHHHHHhhcCCCCc
Q psy13443        107 FRCALCAYSARRKTHLDDHMRRHTGEKPH  135 (188)
Q Consensus       107 ~~C~~C~~~~~~~~~l~~H~~~h~~~~~~  135 (188)
                      ..|..||+.|.....|.+|...|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            44555555555555555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-06  Score=36.34  Aligned_cols=25  Identities=24%  Similarity=0.579  Sum_probs=16.5

Q ss_pred             eecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      ..|+.|++.|+.+..|..|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4566666677766667777666654

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.2e-06  Score=37.41  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=13.5

Q ss_pred             CceecccCccccCCchhHHHHHHhh
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      +||.|.+||+.|..+....+|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4555555555555555555555554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.2e-06  Score=37.95  Aligned_cols=27  Identities=26%  Similarity=0.652  Sum_probs=16.5

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +||.|++|...|..+..+.-|+++|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            456666666666666666666666654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3e-06  Score=36.10  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=21.4

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      |.|++|+.....++.|.+|+|.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67888888888888888888888765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=1.5e-06  Score=37.13  Aligned_cols=27  Identities=33%  Similarity=0.658  Sum_probs=24.4

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      ++||.|.+||+.|.......+|.+.|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999988763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.9e-06  Score=37.36  Aligned_cols=27  Identities=33%  Similarity=0.680  Sum_probs=20.1

Q ss_pred             CCccCCC--CcccccCcHHHHHHHHHhcC
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  159 (188)
                      +||.|..  |++++..+++|.+|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4677765  77888888888888877764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.7e-06  Score=36.03  Aligned_cols=27  Identities=22%  Similarity=0.706  Sum_probs=15.3

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      +||+|..|++.-+..+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.1e-06  Score=38.06  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=28.4

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCCCcee
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFR  108 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  108 (188)
                      ...|.+||+.|.....|..|..+|.+++||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            4579999999999999999999999999973

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=6.4e-06  Score=35.22  Aligned_cols=29  Identities=28%  Similarity=0.618  Sum_probs=25.2

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +||.|.+|.+.....+.|..|+++.|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            58999999999999999999999888643

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.3e-06  Score=35.45  Aligned_cols=26  Identities=42%  Similarity=0.740  Sum_probs=22.6

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      +||+|..|.++-...++|.+|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68899999999999999999998874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.7e-06  Score=34.72  Aligned_cols=28  Identities=32%  Similarity=0.776  Sum_probs=23.6

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      +||+|.+|...-.+.+.|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4788999988888889999998888764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.8e-05  Score=32.73  Aligned_cols=26  Identities=31%  Similarity=0.643  Sum_probs=21.7

Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCCCC
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNGEK  105 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~~~  105 (188)
                      +|+.|.+.|.++..|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58888888888888888888888764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.73  E-value=9.7e-06  Score=35.40  Aligned_cols=27  Identities=26%  Similarity=0.582  Sum_probs=24.9

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhhcC
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIHMG   39 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~~~   39 (188)
                      ||.|.+|++.|..+..|.+|.+..|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999999888765

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.2e-05  Score=37.66  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=23.2

Q ss_pred             cCCCccccCCCcccccCHHHHHHHH
Q psy13443          9 LAKQQFECDFCPYGAKQAADVHNHV   33 (188)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~   33 (188)
                      +|-+||.|..|++.|..+.++.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            4678999999999999999999996

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.71  E-value=1.5e-05  Score=37.20  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=21.8

Q ss_pred             CCccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        133 KPHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       133 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +.|.|.+|++.|.+..+|.-|++.|...+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            45788888888888888888887775443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=2.3e-05  Score=32.42  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             cCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        136 ACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       136 ~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      +|+.|.+.|.++..|..|-|.|.+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58888888888888888888887653

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.67  E-value=2.1e-05  Score=36.63  Aligned_cols=29  Identities=17%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             CceeecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         76 SYTYMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      .+.|.|..|++.|.+.+.|--|++.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            34577777777777777777777777544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.1e-05  Score=33.04  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=14.8

Q ss_pred             ecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         80 MCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      .|..||++|.-.+.|..|+.+|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            466666666666666666666655

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=33.85  Aligned_cols=22  Identities=18%  Similarity=0.797  Sum_probs=20.9

Q ss_pred             ccccCCCcccccCHHHHHHHHH
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      ||.|..|..+|.++.+|..|+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            7999999999999999999995

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.64  E-value=1.3e-05  Score=32.61  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=18.4

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhc
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |+|..|.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578888888888888888877653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.8e-05  Score=33.21  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=11.5

Q ss_pred             cCCCCcccccCcHHHHHHHHHhc
Q psy13443        136 ACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       136 ~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      .|..||++|...+.|.+|+-.|+
T Consensus         4 vc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTS
T ss_pred             hHHHHhHHHHHHHHHHHHhhccc
Confidence            34555555555555555544443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.6e-05  Score=33.73  Aligned_cols=24  Identities=25%  Similarity=0.638  Sum_probs=13.3

Q ss_pred             ceeccc--CccccCCchhHHHHHHhh
Q psy13443        106 PFRCAL--CAYSARRKTHLDDHMRRH  129 (188)
Q Consensus       106 ~~~C~~--C~~~~~~~~~l~~H~~~h  129 (188)
                      ||.|.+  |+++|...++|+.|++.+
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhh
Confidence            455544  555555555555555543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.9e-05  Score=32.74  Aligned_cols=28  Identities=14%  Similarity=0.736  Sum_probs=25.0

Q ss_pred             CccccCCCcccccCHHHHHHHHHhhhcC
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQQIHMG   39 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~   39 (188)
                      +||.|..|...-.+.++|+.|+...|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            5899999999999999999999777654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.6e-05  Score=32.34  Aligned_cols=26  Identities=27%  Similarity=0.637  Sum_probs=17.8

Q ss_pred             eecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      |.|+.|+....-++-|..|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            56677777777677777777777654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=6.4e-05  Score=31.97  Aligned_cols=28  Identities=25%  Similarity=0.858  Sum_probs=25.2

Q ss_pred             CccccCCCcccccCHHHHHHHHHhhhcC
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQQIHMG   39 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~   39 (188)
                      +||+|..|.......++|..|+...|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999999999999999999887764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4e-05  Score=35.89  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=22.5

Q ss_pred             cCCCCccCCCCcccccCcHHHHHHHHH
Q psy13443        130 TGEKPHACGMCGYECAQGSQLMQHLRK  156 (188)
Q Consensus       130 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  156 (188)
                      +|-+||.|.+|++.|....++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            367899999999999999999888754

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=8.5e-05  Score=31.04  Aligned_cols=25  Identities=40%  Similarity=1.002  Sum_probs=15.0

Q ss_pred             CceecccCccccCCchhHHHHHHhh
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      +||.|..|...-...++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4566666666666666666666655

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=0.00011  Score=29.87  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=16.8

Q ss_pred             eecCCCCCCCCCHHHHHHHHHhcC
Q psy13443         79 YMCYLCNYHTPTRKYMRTHIDTHN  102 (188)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~h~  102 (188)
                      |.|..|.++|.-++.|..|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            457777777777777777777663

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.2e-05  Score=31.93  Aligned_cols=24  Identities=21%  Similarity=0.634  Sum_probs=20.8

Q ss_pred             CccCCCCcccccCcHHHHHHHHHh
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      ||.|..|...|.++..|..|++..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688999999999999999998753

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00012  Score=29.70  Aligned_cols=24  Identities=21%  Similarity=0.521  Sum_probs=21.7

Q ss_pred             CccccCCCcccccCHHHHHHHHHh
Q psy13443         12 QQFECDFCPYGAKQAADVHNHVQQ   35 (188)
Q Consensus        12 ~~~~C~~C~~~f~~~~~l~~H~~~   35 (188)
                      .||+|..|...|..+..|..|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999854

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00011  Score=31.11  Aligned_cols=27  Identities=30%  Similarity=0.647  Sum_probs=23.6

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      .|.|+.|...|...-.|..|+.+|+|+
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            578999999999999999999998874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.30  E-value=9.3e-05  Score=31.27  Aligned_cols=25  Identities=24%  Similarity=0.386  Sum_probs=18.6

Q ss_pred             CCccCCC--CcccccCcHHHHHHHHHh
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~~~~  157 (188)
                      .||+|+.  |++.|..++.|.+|-+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4677764  888888888888886654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00017  Score=29.24  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=14.4

Q ss_pred             CccCCCCcccccCcHHHHHHHH
Q psy13443        134 PHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      ||+|..|...|.++.+|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666653

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.14  E-value=0.00011  Score=31.97  Aligned_cols=26  Identities=31%  Similarity=0.802  Sum_probs=17.4

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHK  159 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~  159 (188)
                      ||.|.+|++.|.....|-+|+..-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            56677777777777777777665554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00031  Score=32.33  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             CCCCccC--CCCcccccCcHHHHHHHHHhc
Q psy13443        131 GEKPHAC--GMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       131 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      .++||.|  +.|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3677777  457777777777777776653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00045  Score=29.14  Aligned_cols=27  Identities=41%  Similarity=0.784  Sum_probs=17.7

Q ss_pred             CceecccCccccCCchhHHHHHHhhcC
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~  131 (188)
                      ..|.|..|...|.....|..|+-.|+|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccC
Confidence            356666666666666666666666655

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00038  Score=30.25  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=13.3

Q ss_pred             CCccCCC--CcccccCcHHHHHHH
Q psy13443        133 KPHACGM--CGYECAQGSQLMQHL  154 (188)
Q Consensus       133 ~~~~C~~--C~~~f~~~~~l~~H~  154 (188)
                      +||.|.+  |.++|++.++-.+|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            3555654  666666666666665

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00051  Score=28.49  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             ccccCCCcccccCHHHHHHHHH
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQ   34 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~   34 (188)
                      ||+|..||+.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7899999999999999999963

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00026  Score=30.74  Aligned_cols=27  Identities=26%  Similarity=0.619  Sum_probs=23.6

Q ss_pred             Cceeccc--CccccCCchhHHHHH-HhhcC
Q psy13443        105 KPFRCAL--CAYSARRKTHLDDHM-RRHTG  131 (188)
Q Consensus       105 ~~~~C~~--C~~~~~~~~~l~~H~-~~h~~  131 (188)
                      +||.|..  |.++|+..+.-..|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6899988  999999999999996 77754

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.70  E-value=0.00068  Score=28.55  Aligned_cols=24  Identities=21%  Similarity=0.438  Sum_probs=12.2

Q ss_pred             eeecC--CCCCCCCCHHHHHHHHHhc
Q psy13443         78 TYMCY--LCNYHTPTRKYMRTHIDTH  101 (188)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~h  101 (188)
                      ||.|+  .|++.|..++.|..|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            44443  2555555555555555444

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0015  Score=29.96  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=24.5

Q ss_pred             cCCCcccc--CCCcccccCHHHHHHHHHhhh
Q psy13443          9 LAKQQFEC--DFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus         9 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      ..++||.|  +-|+.+|.+...|..|..+|.
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhhhe
Confidence            35899999  559999999999999985554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.46  E-value=0.001  Score=28.13  Aligned_cols=26  Identities=19%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             CccccCC--CcccccCHHHHHHHHHhhh
Q psy13443         12 QQFECDF--CPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        12 ~~~~C~~--C~~~f~~~~~l~~H~~~~~   37 (188)
                      +||+|..  |.+.|.+...|.+|...+.
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5899954  9999999999999985443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0012  Score=27.60  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=10.8

Q ss_pred             ecccCccccCCchhHHHHHHhh
Q psy13443        108 RCALCAYSARRKTHLDDHMRRH  129 (188)
Q Consensus       108 ~C~~C~~~~~~~~~l~~H~~~h  129 (188)
                      .|+.|+++.++.+.|..|.++|
T Consensus         4 kc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGG
T ss_pred             cCcccccccCcHHHHHHhhccc
Confidence            4444555444555555444444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0019  Score=26.94  Aligned_cols=22  Identities=32%  Similarity=0.700  Sum_probs=11.6

Q ss_pred             cCCCCcccccCcHHHHHHHHHh
Q psy13443        136 ACGMCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       136 ~C~~C~~~f~~~~~l~~H~~~~  157 (188)
                      +|+.|.+..+++..|..|-|.|
T Consensus         4 kc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGG
T ss_pred             cCcccccccCcHHHHHHhhccc
Confidence            4555555555555555555444

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.33  E-value=0.0021  Score=27.15  Aligned_cols=15  Identities=27%  Similarity=0.423  Sum_probs=5.5

Q ss_pred             CccccCCchhHHHHH
Q psy13443        112 CAYSARRKTHLDDHM  126 (188)
Q Consensus       112 C~~~~~~~~~l~~H~  126 (188)
                      |.+.|.+.-.|.+|.
T Consensus        10 c~kgf~tlhhltrhs   24 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHS   24 (30)
T ss_dssp             CCCEESSTTHHHHHH
T ss_pred             ccccchhhhhhhhhh
Confidence            333333333333333

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.29  E-value=0.0021  Score=26.04  Aligned_cols=24  Identities=29%  Similarity=0.667  Sum_probs=21.5

Q ss_pred             cccCCCcccccCHHHHHHHHHhhh
Q psy13443         14 FECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        14 ~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      |+|+.|-+.|..+.++..|....|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            889999999999999999986554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.09  E-value=0.0026  Score=25.73  Aligned_cols=24  Identities=21%  Similarity=0.533  Sum_probs=14.8

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhc
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |.|+.|-+.|..+..+..|.+..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            456666666666666666665544

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.002  Score=26.63  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=13.5

Q ss_pred             ceecccCccccCCchhHHHHHH
Q psy13443        106 PFRCALCAYSARRKTHLDDHMR  127 (188)
Q Consensus       106 ~~~C~~C~~~~~~~~~l~~H~~  127 (188)
                      ||.|..||+.|....+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4566666666666666666543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0029  Score=30.55  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHN  102 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~  102 (188)
                      .|.|.+|+++|.....|.+|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999999999999988775

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.003  Score=27.96  Aligned_cols=28  Identities=18%  Similarity=0.451  Sum_probs=22.0

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      .|.|..|+++|.....+.+|.....+..
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCC
Confidence            4788888888888888888887766543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0045  Score=25.66  Aligned_cols=25  Identities=24%  Similarity=0.587  Sum_probs=21.9

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhh
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      .|.|++|+.....++.|..|++..|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4899999999999999999986554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0043  Score=25.73  Aligned_cols=24  Identities=42%  Similarity=0.580  Sum_probs=18.4

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhc
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      |+|+.|+-....+++|..|++.-|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            678888888888888888877654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0047  Score=29.77  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             CccCCCCcccccCcHHHHHHHHHhc
Q psy13443        134 PHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      -|.|..|++.|.....|.+|-..|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999999999999976553

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0099  Score=26.23  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             eeecCCCCCCCCCHHHHHHHHHhcCC
Q psy13443         78 TYMCYLCNYHTPTRKYMRTHIDTHNG  103 (188)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~h~~  103 (188)
                      .|.|+.|++.|.....+..|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47888888888888888888765544

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.016  Score=24.35  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhcCCC
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVHKVD  161 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h~~~  161 (188)
                      |.|..|++...+...+..|+-..|+..
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~~   29 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNSL   29 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             eechhHHHHHhhccCceEEEeecccCC
Confidence            567777777777777777776666543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.20  E-value=0.013  Score=28.04  Aligned_cols=31  Identities=19%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             CCccccCCCcccccCHHHHHHHHHhhhcCCc
Q psy13443         11 KQQFECDFCPYGAKQAADVHNHVQQIHMGVN   41 (188)
Q Consensus        11 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   41 (188)
                      +.|-.|++|+-......+|.+|+...|..+|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            5688999999999999999999987776544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.01  Score=26.51  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHHhcCCC
Q psy13443         84 CNYHTPTRKYMRTHIDTHNGE  104 (188)
Q Consensus        84 C~~~f~~~~~l~~H~~~h~~~  104 (188)
                      =++.|.....|..|+++|+|+
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            345688888888888888874

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.57  E-value=0.014  Score=25.84  Aligned_cols=30  Identities=13%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             cCCCccccCCCcccccCHHHHHHHHHhhhc
Q psy13443          9 LAKQQFECDFCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus         9 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      .|+..|.|..|.+.+.-.+++-+|....|.
T Consensus         4 Eg~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           4 EGEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             ccCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            456679999999999999999999876654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0096  Score=26.61  Aligned_cols=20  Identities=45%  Similarity=0.536  Sum_probs=14.9

Q ss_pred             ccccCCchhHHHHHHhhcCC
Q psy13443        113 AYSARRKTHLDDHMRRHTGE  132 (188)
Q Consensus       113 ~~~~~~~~~l~~H~~~h~~~  132 (188)
                      ++.|.....|..|++.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34577888888888888764

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.49  E-value=0.014  Score=25.46  Aligned_cols=23  Identities=17%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHH
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHID   99 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~   99 (188)
                      ..|.|.-||-.|++.+.|.+|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35889999999999999999965

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.039  Score=23.09  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhhc
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~~   38 (188)
                      -|.|.+|++...+...++-|+..-|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            47899999999999999999865554

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.73  E-value=0.018  Score=25.11  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=17.5

Q ss_pred             CccCCCCcccccCcHHHHHHH
Q psy13443        134 PHACGMCGYECAQGSQLMQHL  154 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~  154 (188)
                      .|.|+-||-.|++.+.|..|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            478888888888888888885

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.22  E-value=0.06  Score=25.69  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=16.7

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhcCC
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      +.|-.|++|+....+...|.+|++.-|-.
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~   50 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSC
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            34555666666666666666666554433

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.08  E-value=0.065  Score=22.38  Aligned_cols=26  Identities=15%  Similarity=0.577  Sum_probs=20.7

Q ss_pred             ccCC--CCcccccCcHHHHHHHHHhcCC
Q psy13443        135 HACG--MCGYECAQGSQLMQHLRKVHKV  160 (188)
Q Consensus       135 ~~C~--~C~~~f~~~~~l~~H~~~~h~~  160 (188)
                      |.|.  .|+-.|.++..+..|....|+.
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfhn~   30 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFHNI   30 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHTTT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhccC
Confidence            4554  5899999999999999887753

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.06  E-value=0.046  Score=23.28  Aligned_cols=20  Identities=30%  Similarity=0.677  Sum_probs=10.2

Q ss_pred             CccccCCchhHHHHHHhhcC
Q psy13443        112 CAYSARRKTHLDDHMRRHTG  131 (188)
Q Consensus       112 C~~~~~~~~~l~~H~~~h~~  131 (188)
                      |+..|.....|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            55555555555555544443

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.055  Score=22.54  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=17.3

Q ss_pred             CCCcccccCcHHHHHHHHHhc
Q psy13443        138 GMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       138 ~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      +.|++.|++...|..|.+..|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            459999999999998887655

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.47  E-value=0.05  Score=22.20  Aligned_cols=19  Identities=26%  Similarity=0.294  Sum_probs=13.5

Q ss_pred             CCcccccCcHHHHHHHHHh
Q psy13443        139 MCGYECAQGSQLMQHLRKV  157 (188)
Q Consensus       139 ~C~~~f~~~~~l~~H~~~~  157 (188)
                      .|+++|.....|..|+-.|
T Consensus         8 ~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeecc
Confidence            3777777777777777655

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.064  Score=27.80  Aligned_cols=36  Identities=17%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHHhcCCCCceecccCccc
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYS  115 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~  115 (188)
                      ..|.|+.|++.|.   .|.+-.........|.|..|+..
T Consensus        13 ~~y~Cp~C~~~ys---~Lda~~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFT---DLEANQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEE---HHHHHHHEETTTTEEBCSSSCCB
T ss_pred             CceECCCCCCCcc---hhhHHHhcCcCCCeEEecCCCCE
Confidence            3466777776665   33333333333345667666644

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.087  Score=21.80  Aligned_cols=23  Identities=17%  Similarity=0.470  Sum_probs=18.4

Q ss_pred             ccCC--CcccccCHHHHHHHHHhhhc
Q psy13443         15 ECDF--CPYGAKQAADVHNHVQQIHM   38 (188)
Q Consensus        15 ~C~~--C~~~f~~~~~l~~H~~~~~~   38 (188)
                      .|+.  |++-|++.+.+..|+ ..|+
T Consensus         3 ~CphkgC~K~Frd~saMRKHl-htHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHL-HTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHH-GGGS
T ss_pred             cCCcccHHHHhhchHHHHHHh-hccC
Confidence            4644  999999999999998 5554

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.84  E-value=0.05  Score=25.05  Aligned_cols=12  Identities=42%  Similarity=1.176  Sum_probs=6.6

Q ss_pred             CceecccCcccc
Q psy13443        105 KPFRCALCAYSA  116 (188)
Q Consensus       105 ~~~~C~~C~~~~  116 (188)
                      +.|.|++||..+
T Consensus         4 ~~~~C~vCG~i~   15 (37)
T d1nnqa2           4 KVYICPICGYTA   15 (37)
T ss_dssp             CEEECTTTCCEE
T ss_pred             cEEECCCCCCEe
Confidence            345666666543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.58  E-value=0.065  Score=23.63  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=10.5

Q ss_pred             ccCCCCcccccCcHHHHHHHHH
Q psy13443        135 HACGMCGYECAQGSQLMQHLRK  156 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~  156 (188)
                      |+|..|.+.+...+.+-+|.-+
T Consensus         9 yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           9 YRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             EEeehhhHHHHHHHHHHHHHHh
Confidence            4444444444444444444433

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.49  E-value=0.064  Score=24.49  Aligned_cols=25  Identities=32%  Similarity=0.739  Sum_probs=15.4

Q ss_pred             CceecccCccccCCchhHHHHHHhhcCCCCccCCCCcc
Q psy13443        105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGY  142 (188)
Q Consensus       105 ~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~C~~  142 (188)
                      +.|.|++||..+.             ++.|-+|++|+.
T Consensus         4 ~~~vC~vCGyi~~-------------g~~Pe~CPvCg~   28 (36)
T d1yuza2           4 KFHLCPICGYIHK-------------GEDFEKCPICFR   28 (36)
T ss_dssp             CEEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             CEEECCCCCCEee-------------CCCCCcCCCCCC
Confidence            4577777776533             344567777764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.022  Score=30.19  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=16.4

Q ss_pred             CccCCCCcccccCcHHHHHHHH
Q psy13443        134 PHACGMCGYECAQGSQLMQHLR  155 (188)
Q Consensus       134 ~~~C~~C~~~f~~~~~l~~H~~  155 (188)
                      .|-|..|++.|.+...|..|.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            3677778888888878777764

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.11  Score=23.12  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             ccCCCCcccccCcHHHHHHHHHhcCCCC
Q psy13443        135 HACGMCGYECAQGSQLMQHLRKVHKVDK  162 (188)
Q Consensus       135 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~  162 (188)
                      +.|-.|.++|.+...+++|+--.|+...
T Consensus         4 ltclecmrtfkssfsiwrhqvevhnqn~   31 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVHNQNN   31 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHhhheeccccc
Confidence            5688899999999999999987776543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.048  Score=28.82  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=16.1

Q ss_pred             ceeecCCCCCCCCCHHHHHHHHH
Q psy13443         77 YTYMCYLCNYHTPTRKYMRTHID   99 (188)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~   99 (188)
                      ..|-|..|++.|.+...|..|.+
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTT
T ss_pred             CEEecccccCccCCHHHHHHHHc
Confidence            34677777777777777777764

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.15  Score=22.64  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             ccccCCCcccccCHHHHHHHHHhhhcC
Q psy13443         13 QFECDFCPYGAKQAADVHNHVQQIHMG   39 (188)
Q Consensus        13 ~~~C~~C~~~f~~~~~l~~H~~~~~~~   39 (188)
                      ...|..|-++|.+..++++|+...|..
T Consensus         3 kltclecmrtfkssfsiwrhqvevhnq   29 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVEVHNQ   29 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             cccHHHHHHHHHHHHHHHHhhheeccc
Confidence            468999999999999999998776653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.28  Score=25.16  Aligned_cols=28  Identities=14%  Similarity=0.495  Sum_probs=23.4

Q ss_pred             CCCccccCCCcccccCHHHHHHHHHhhh
Q psy13443         10 AKQQFECDFCPYGAKQAADVHNHVQQIH   37 (188)
Q Consensus        10 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~   37 (188)
                      +..-|.|.+|...|-+...|..|+..+.
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            3456999999999999999999995443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=0.3  Score=25.03  Aligned_cols=27  Identities=19%  Similarity=0.370  Sum_probs=21.5

Q ss_pred             CCCccCCCCcccccCcHHHHHHHHHhc
Q psy13443        132 EKPHACGMCGYECAQGSQLMQHLRKVH  158 (188)
Q Consensus       132 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  158 (188)
                      ...|+|..|.-.|.+...|..|+..|.
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhcc
Confidence            345888888888888888888887664

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.74  Score=22.34  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             CCCccCC--CCcccccCcHHHHHHHHHhcCCCCCC
Q psy13443        132 EKPHACG--MCGYECAQGSQLMQHLRKVHKVDKKG  164 (188)
Q Consensus       132 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~  164 (188)
                      -+||.|-  .|-.+|.-...|--|.+..|......
T Consensus        18 yrpyrcvhqgc~aaftiq~nlilhy~avh~s~lp~   52 (61)
T d1x3ca1          18 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPA   52 (61)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCC
T ss_pred             CCceeeeccchhhhhhhhhhHHHHHHHHhhhcCch
Confidence            4678885  48889999999999998888655443

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=82.07  E-value=0.41  Score=22.87  Aligned_cols=13  Identities=23%  Similarity=0.823  Sum_probs=7.6

Q ss_pred             ceecccCccccCC
Q psy13443        106 PFRCALCAYSARR  118 (188)
Q Consensus       106 ~~~C~~C~~~~~~  118 (188)
                      .|.|.+||..|.-
T Consensus         3 ~y~C~~CgyiYd~   15 (45)
T d6rxna_           3 KYVCNVCGYEYDP   15 (45)
T ss_dssp             CEEETTTCCEECG
T ss_pred             CeEeCCCCeEECc
Confidence            3666666666543

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.29  E-value=0.81  Score=20.26  Aligned_cols=18  Identities=22%  Similarity=0.325  Sum_probs=9.5

Q ss_pred             cCCCCCCCCCHHHHHHHH
Q psy13443         81 CYLCNYHTPTRKYMRTHI   98 (188)
Q Consensus        81 C~~C~~~f~~~~~l~~H~   98 (188)
                      |..|+-.|.....+.+|.
T Consensus        11 C~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             ETTTTEECSSHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHH
Confidence            555555555555555553