Psyllid ID: psy13469


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70----
MGPHSHHATASHRGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDKTALAKKLI
ccccccccccccccccEEEEEccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcc
ccccccccccccccccEEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccc
mgphshhatashrgpsslfllsetnTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALeehlpkgdkTALAKKLI
mgphshhatashrgpsslfLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEehlpkgdktalakkli
MGPHSHHATASHRGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDKTALAKKLI
*****************LFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEH**************
*************GPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPK**KTA***KLI
*************GPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLP************
************RGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDK********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGPHSHHATASHRGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDKTALAKKLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query74 2.2.26 [Sep-21-2011]
P91645 1851 Voltage-dependent calcium yes N/A 0.986 0.039 0.712 2e-24
C9D7C2 1904 Voltage-dependent calcium yes N/A 0.783 0.030 0.827 1e-22
P56699 2223 Probable voltage-dependen N/A N/A 0.918 0.030 0.605 3e-18
P56698 2326 Probable voltage-dependen N/A N/A 0.756 0.024 0.631 1e-17
Q02294 2336 Voltage-dependent N-type yes N/A 0.770 0.024 0.649 1e-17
Q05152 2339 Voltage-dependent N-type yes N/A 0.770 0.024 0.649 1e-17
Q00975 2339 Voltage-dependent N-type yes N/A 0.770 0.024 0.649 1e-17
O55017 2327 Voltage-dependent N-type yes N/A 0.770 0.024 0.649 1e-17
P54282 2212 Voltage-dependent P/Q-typ no N/A 0.770 0.025 0.649 6e-17
P27884 2424 Voltage-dependent P/Q-typ no N/A 0.770 0.023 0.649 6e-17
>sp|P91645|CAC1A_DROME Voltage-dependent calcium channel type A subunit alpha-1 OS=Drosophila melanogaster GN=cac PE=2 SV=3 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 58/73 (79%)

Query: 1  MGPHSHHATASHRGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEH 60
          MG           GP+SLF+L+E N +R+YTRFIIEWPPFEYAVLLTIIANCVVLALEEH
Sbjct: 1  MGGPKKEENPPGGGPTSLFILTEDNPIRKYTRFIIEWPPFEYAVLLTIIANCVVLALEEH 60

Query: 61 LPKGDKTALAKKL 73
          LP GDKT LA+KL
Sbjct: 61 LPGGDKTVLAQKL 73




Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, neurotransmitter release, gene expression, cell motility, cell division and cell death (By similarity). Probably encodes a dihydropyridine-insensitive current. Vital for survival to adulthood.
Drosophila melanogaster (taxid: 7227)
>sp|C9D7C2|CAC1A_APIME Voltage-dependent calcium channel type A subunit alpha-1 OS=Apis mellifera GN=CAC PE=2 SV=1 Back     alignment and function description
>sp|P56699|CAC1E_DIPOM Probable voltage-dependent R-type calcium channel subunit alpha-1E OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description
>sp|P56698|CAC1B_DIPOM Probable voltage-dependent N-type calcium channel subunit alpha-1B OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description
>sp|Q02294|CAC1B_RAT Voltage-dependent N-type calcium channel subunit alpha-1B OS=Rattus norvegicus GN=Cacna1b PE=1 SV=1 Back     alignment and function description
>sp|Q05152|CAC1B_RABIT Voltage-dependent N-type calcium channel subunit alpha-1B OS=Oryctolagus cuniculus GN=CACNA1B PE=1 SV=1 Back     alignment and function description
>sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1 Back     alignment and function description
>sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel subunit alpha-1B OS=Mus musculus GN=Cacna1b PE=1 SV=1 Back     alignment and function description
>sp|P54282|CAC1A_RAT Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Rattus norvegicus GN=Cacna1a PE=1 SV=1 Back     alignment and function description
>sp|P27884|CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Oryctolagus cuniculus GN=CACNA1A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query74
391338112 2655 PREDICTED: voltage-dependent calcium cha 0.837 0.023 0.838 1e-24
321454423 1566 hypothetical protein DAPPUDRAFT_333049 [ 0.891 0.042 0.805 3e-24
195356077 1472 GM13236 [Drosophila sechellia] gi|194131 0.810 0.040 0.833 1e-23
194889282 1483 GG18816 [Drosophila erecta] gi|190648701 0.810 0.040 0.833 1e-23
195131717 544 GI14769 [Drosophila mojavensis] gi|19390 0.810 0.110 0.833 1e-23
427791701 1562 Putative voltage-dependent p/q type calc 0.824 0.039 0.819 2e-23
195167277 734 GL15847 [Drosophila persimilis] gi|19410 0.810 0.081 0.833 3e-23
158290800 1875 AGAP002578-PA [Anopheles gambiae str. PE 0.972 0.038 0.739 5e-23
347968113 1875 AGAP002578-PC [Anopheles gambiae str. PE 0.972 0.038 0.739 5e-23
347968115 1875 AGAP002578-PD [Anopheles gambiae str. PE 0.972 0.038 0.739 5e-23
>gi|391338112|ref|XP_003743405.1| PREDICTED: voltage-dependent calcium channel type A subunit alpha-1-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 58/62 (93%)

Query: 12   HRGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDKTALAK 71
             RGPS+LF+LSE N +R+YTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGD+T LA+
Sbjct: 1106 QRGPSALFILSEDNPLRRYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDRTPLAQ 1165

Query: 72   KL 73
            KL
Sbjct: 1166 KL 1167




Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321454423|gb|EFX65595.1| hypothetical protein DAPPUDRAFT_333049 [Daphnia pulex] Back     alignment and taxonomy information
>gi|195356077|ref|XP_002044508.1| GM13236 [Drosophila sechellia] gi|194131810|gb|EDW53744.1| GM13236 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|194889282|ref|XP_001977052.1| GG18816 [Drosophila erecta] gi|190648701|gb|EDV45979.1| GG18816 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195131717|ref|XP_002010292.1| GI14769 [Drosophila mojavensis] gi|193908742|gb|EDW07609.1| GI14769 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|427791701|gb|JAA61302.1| Putative voltage-dependent p/q type calcium channel voltage-dependent p/q type calcium channel, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|195167277|ref|XP_002024460.1| GL15847 [Drosophila persimilis] gi|194107858|gb|EDW29901.1| GL15847 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|158290800|ref|XP_312358.4| AGAP002578-PA [Anopheles gambiae str. PEST] gi|157018071|gb|EAA44910.4| AGAP002578-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347968113|ref|XP_003436161.1| AGAP002578-PC [Anopheles gambiae str. PEST] gi|333468156|gb|EGK96851.1| AGAP002578-PC [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347968115|ref|XP_003436162.1| AGAP002578-PD [Anopheles gambiae str. PEST] gi|333468157|gb|EGK96852.1| AGAP002578-PD [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query74
FB|FBgn0263111 1851 cac "cacophony" [Drosophila me 0.810 0.032 0.833 1.7e-21
ZFIN|ZDB-GENE-070705-133 939 si:ch211-241e1.2 "si:ch211-241 0.918 0.072 0.535 2.2e-15
WB|WBGene00006742 2087 unc-2 [Caenorhabditis elegans 0.932 0.033 0.565 2.2e-15
UNIPROTKB|E9PIE8 438 CACNA1E "Voltage-dependent R-t 0.770 0.130 0.596 2.4e-15
UNIPROTKB|B1AQK4 2237 CACNA1B "Voltage-dependent N-t 0.770 0.025 0.649 3.9e-15
MGI|MGI:88296 2327 Cacna1b "calcium channel, volt 0.770 0.024 0.649 4.1e-15
UNIPROTKB|G3X7Z2 2331 CACNA1B "Uncharacterized prote 0.770 0.024 0.649 4.1e-15
UNIPROTKB|F1LRE0 2334 Cacna1b "Voltage-dependent N-t 0.770 0.024 0.649 4.1e-15
RGD|628852 2336 Cacna1b "calcium channel, volt 0.770 0.024 0.649 4.1e-15
UNIPROTKB|F1LQ87 2336 Cacna1b "Voltage-dependent N-t 0.770 0.024 0.649 4.1e-15
FB|FBgn0263111 cac "cacophony" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 267 (99.0 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query:    14 GPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDKTALAKKL 73
             GP+SLF+L+E N +R+YTRFIIEWPPFEYAVLLTIIANCVVLALEEHLP GDKT LA+KL
Sbjct:    14 GPTSLFILTEDNPIRKYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPGGDKTVLAQKL 73




GO:0007619 "courtship behavior" evidence=NAS;IMP
GO:0008344 "adult locomotory behavior" evidence=IGI;IMP
GO:0045433 "male courtship behavior, veined wing generated song production" evidence=NAS;IMP;TAS
GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP
GO:0005245 "voltage-gated calcium channel activity" evidence=IDA;IMP;NAS
GO:0006816 "calcium ion transport" evidence=IMP;NAS
GO:0005891 "voltage-gated calcium channel complex" evidence=IEA;NAS
GO:0007269 "neurotransmitter secretion" evidence=IMP
GO:0016323 "basolateral plasma membrane" evidence=IDA
GO:0042045 "epithelial fluid transport" evidence=IEP;IDA
GO:0016324 "apical plasma membrane" evidence=IDA
GO:0007602 "phototransduction" evidence=NAS
GO:0007632 "visual behavior" evidence=NAS
GO:0048786 "presynaptic active zone" evidence=IDA
GO:0007268 "synaptic transmission" evidence=IMP;IDA
GO:0006887 "exocytosis" evidence=IMP
GO:0005509 "calcium ion binding" evidence=IEA
GO:0070588 "calcium ion transmembrane transport" evidence=IEA
GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP
GO:0002027 "regulation of heart rate" evidence=IMP
GO:0046928 "regulation of neurotransmitter secretion" evidence=IGI
GO:0008331 "high voltage-gated calcium channel activity" evidence=IMP
GO:0008332 "low voltage-gated calcium channel activity" evidence=IMP
ZFIN|ZDB-GENE-070705-133 si:ch211-241e1.2 "si:ch211-241e1.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00006742 unc-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E9PIE8 CACNA1E "Voltage-dependent R-type calcium channel subunit alpha-1E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B1AQK4 CACNA1B "Voltage-dependent N-type calcium channel subunit alpha-1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:88296 Cacna1b "calcium channel, voltage-dependent, N type, alpha 1B subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7Z2 CACNA1B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRE0 Cacna1b "Voltage-dependent N-type calcium channel subunit alpha-1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|628852 Cacna1b "calcium channel, voltage-dependent, N type, alpha 1B subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQ87 Cacna1b "Voltage-dependent N-type calcium channel subunit alpha-1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C9D7C2CAC1A_APIMENo assigned EC number0.82750.78370.0304yesN/A
Q05152CAC1B_RABITNo assigned EC number0.64910.77020.0243yesN/A
O55017CAC1B_MOUSENo assigned EC number0.64910.77020.0244yesN/A
Q02294CAC1B_RATNo assigned EC number0.64910.77020.0244yesN/A
Q00975CAC1B_HUMANNo assigned EC number0.64910.77020.0243yesN/A
P91645CAC1A_DROMENo assigned EC number0.71230.98640.0394yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query74
3rvy_A 285 ION transport protein; tetrameric ION channel, vol 2e-07
4dxw_A 229 Navrh, ION transport protein; tetrameric, voltage- 1e-04
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285 Back     alignment and structure
 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 12 HRGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEH 60
                  L+   + +      I+E   F   ++  I+ N + + LE  
Sbjct: 4  KDDDDKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETS 52


>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query74
3rvy_A 285 ION transport protein; tetrameric ION channel, vol 97.31
4dxw_A 229 Navrh, ION transport protein; tetrameric, voltage- 96.41
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 94.73
1ors_C132 Potassium channel; voltage-dependent, voltage sens 94.58
1orq_C 223 Potassium channel; voltage-dependent, KVAP, FAB co 92.66
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 90.16
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
Probab=97.31  E-value=0.00018  Score=49.82  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             eCCCChhHHHHHHhhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469         21 LSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEH   60 (74)
Q Consensus        21 fsp~Np~R~~ci~i~~~~~F~~~Il~~Il~nci~Lal~~p   60 (74)
                      .++.+.+|+.|.+++.+++|+++++++|++|++.++++..
T Consensus        13 ~p~~~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~   52 (285)
T 3rvy_A           13 VPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETS   52 (285)
T ss_dssp             ------CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCchHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4555669999999999999999999999999999999986



>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 74
d1orsc_132 f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer 0.003
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]
 Score = 31.4 bits (71), Expect = 0.003
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 34 IIEWPPFEYAVLLTIIANCVVLALEEH 60
          ++E P  E  V    + + +V+ +E  
Sbjct: 2  VMEHPLVELGVSYAALLSVIVVVVEYT 28


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query74
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 96.06
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.06  E-value=0.0013  Score=40.26  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=25.1

Q ss_pred             hhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469         34 IIEWPPFEYAVLLTIIANCVVLALEEH   60 (74)
Q Consensus        34 i~~~~~F~~~Il~~Il~nci~Lal~~p   60 (74)
                      +++||+||.+++.+|++|++.+++|..
T Consensus         2 ~i~~p~~e~~i~~lillnvi~~~let~   28 (132)
T d1orsc_           2 VMEHPLVELGVSYAALLSVIVVVVEYT   28 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999875