Psyllid ID: psy1347

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGNYSMYGVLGV
cccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccc
ccccccccccccHHEEcccccccHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHEEEEEEccccccHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHEEEccccccccccccc
mlfpfhnylgpgnhldngppiddddeialrhdeayetatspeqVRQADIEAIRDFNtnyvatgnWHSVVGAIGLTWKYEVEQFtgvlyppvdksgwtpVIQEVLSLYTTGVMgllvghpmdtiktrtqtmpdkTMIQIIANTFKlegfrgfykgflapmlttgvtnaifFGVYGNTIRYLRSISesseeyrcdgflatplwdwneffsgSIAGAIITAVGAPVEAIKTRLQAnagnysmygvlgv
MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAyetatspeqvrqADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRtqtmpdktMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRlqanagnysmygvlgv
MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGNYSMYGVLGV
**********************************************ADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGNYSMYGVL**
MLFPFHNYLGPGNHLDNGPPIDDDDEIA*********************EAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQ*******************EVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISE***********ATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQA********GVLGV
MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGNYSMYGVLGV
MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSIS************ATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAG**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGNYSMYGVLGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q8CFJ7 288 Solute carrier family 25 yes N/A 0.510 0.434 0.330 6e-14
Q8N413 288 Solute carrier family 25 yes N/A 0.510 0.434 0.323 2e-13
Q5HZE0 306 Mitochondrial carnitine/a no N/A 0.440 0.352 0.369 2e-13
Q8N8R3 303 Mitochondrial carnitine/a no N/A 0.428 0.346 0.377 3e-13
Q08DK7 298 Mitochondrial carnitine/a yes N/A 0.428 0.352 0.377 4e-13
Q8BL03 306 Mitochondrial carnitine/a no N/A 0.440 0.352 0.353 5e-13
Q6ZT89 311 Solute carrier family 25 no N/A 0.469 0.369 0.338 8e-13
Q8BW66 306 Solute carrier family 25 no N/A 0.510 0.408 0.320 8e-13
Q3MHI3 311 Solute carrier family 25 no N/A 0.510 0.401 0.305 3e-12
A4QNX2 288 Solute carrier family 25 no N/A 0.473 0.402 0.304 9e-12
>sp|Q8CFJ7|S2545_MOUSE Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1 Back     alignment and function desciption
 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)

Query: 100 IQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPD-KTMIQIIANTFKLEGFRGFYKGFLAP 158
           ++E ++ + +G +GL++GHP DT+K R QT    + ++  +  T++ E   GF+KG   P
Sbjct: 3   VEEFVAGWISGAVGLVLGHPFDTVKVRLQTQSTYQGIVDCVVKTYRHESVLGFFKGMSFP 62

Query: 159 MLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITA 218
           + +  + N++ FGVY NT+  L + S   +E R     A P    N F +G   G +   
Sbjct: 63  IASVALVNSVLFGVYSNTLLALTATSH--QERR-----AQPPSYTNIFIAGCTGGLLQAY 115

Query: 219 VGAPVEAIKTRLQ 231
             AP + IK RLQ
Sbjct: 116 CLAPFDLIKVRLQ 128

Mus musculus (taxid: 10090)
>sp|Q8N413|S2545_HUMAN Solute carrier family 25 member 45 OS=Homo sapiens GN=SLC25A45 PE=2 SV=2 Back     alignment and function description
>sp|Q5HZE0|MCATL_RAT Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1 Back     alignment and function description
>sp|Q8N8R3|MCATL_HUMAN Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2 Back     alignment and function description
>sp|Q08DK7|MCATL_BOVIN Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1 Back     alignment and function description
>sp|Q8BL03|MCATL_MOUSE Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Mus musculus GN=Slc25a29 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZT89|S2548_HUMAN Solute carrier family 25 member 48 OS=Homo sapiens GN=SLC25A48 PE=2 SV=2 Back     alignment and function description
>sp|Q8BW66|S2548_MOUSE Solute carrier family 25 member 48 OS=Mus musculus GN=Slc25a48 PE=2 SV=2 Back     alignment and function description
>sp|Q3MHI3|S2548_BOVIN Solute carrier family 25 member 48 OS=Bos taurus GN=SLC25A48 PE=2 SV=1 Back     alignment and function description
>sp|A4QNX2|S247B_DANRE Solute carrier family 25 member 47-B OS=Danio rerio GN=slc25a47b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
242008547286 mitochondrial carnitine/acylcarnitine ca 0.465 0.398 0.403 6e-18
290986282 355 mitochondrial carrier protein [Naegleria 0.469 0.323 0.421 2e-17
5689346291 structural protein [Periplaneta fuligino 0.371 0.312 0.494 2e-17
9633610242 structural protein [Periplaneta fuligino 0.371 0.376 0.494 3e-17
443709629321 hypothetical protein CAPTEDRAFT_18029 [C 0.661 0.504 0.348 2e-16
195053756298 GH21702 [Drosophila grimshawi] gi|193895 0.481 0.395 0.384 5e-16
195113635298 GI10754 [Drosophila mojavensis] gi|19391 0.477 0.392 0.373 5e-16
347971229296 AGAP004095-PA [Anopheles gambiae str. PE 0.502 0.415 0.376 1e-15
195394738298 GJ10696 [Drosophila virilis] gi|19414270 0.481 0.395 0.36 2e-15
289742611305 mitochondrial carnitine-acylcarnitine ca 0.477 0.383 0.379 2e-15
>gi|242008547|ref|XP_002425064.1| mitochondrial carnitine/acylcarnitine carrier protein CACL, putative [Pediculus humanus corporis] gi|212508729|gb|EEB12326.1| mitochondrial carnitine/acylcarnitine carrier protein CACL, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 10/124 (8%)

Query: 111 VMGLLVGHPMDTIKTRTQTMPDKTMIQIIA-NTFKLEGFRGFYKGFLAPMLTTGVTNAIF 169
           +MGL++GHP+DTIK R Q  P    I  +A +T+KLEG +GF+KG   P+  +GV NA+F
Sbjct: 1   MMGLIIGHPLDTIKVRQQIFPGGGKIFAVAKSTYKLEGIQGFFKGLSYPLFGSGVYNALF 60

Query: 170 FGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTR 229
           FGVYGN +R L+ +S         G   +  W  + F +G + G        P+E IK +
Sbjct: 61  FGVYGNCLRILQGVS---------GEPPSSSWHRDVFVAGCLGGTAAVLYSCPLEIIKIK 111

Query: 230 LQAN 233
           LQ+ 
Sbjct: 112 LQSQ 115

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|290986282|ref|XP_002675853.1| mitochondrial carrier protein [Naegleria gruberi] gi|284089452|gb|EFC43109.1| mitochondrial carrier protein [Naegleria gruberi] Back     alignment and taxonomy information
>gi|5689346|dbj|BAA82965.1| structural protein [Periplaneta fuliginosa densovirus] Back     alignment and taxonomy information
>gi|9633610|ref|NP_051016.1| structural protein [Periplaneta fuliginosa densovirus] gi|6120123|gb|AAF04300.1| structural protein [Periplaneta fuliginosa densovirus] Back     alignment and taxonomy information
>gi|443709629|gb|ELU04221.1| hypothetical protein CAPTEDRAFT_18029 [Capitella teleta] Back     alignment and taxonomy information
>gi|195053756|ref|XP_001993792.1| GH21702 [Drosophila grimshawi] gi|193895662|gb|EDV94528.1| GH21702 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195113635|ref|XP_002001373.1| GI10754 [Drosophila mojavensis] gi|193917967|gb|EDW16834.1| GI10754 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|347971229|ref|XP_312966.5| AGAP004095-PA [Anopheles gambiae str. PEST] gi|333468573|gb|EAA08666.5| AGAP004095-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195394738|ref|XP_002055999.1| GJ10696 [Drosophila virilis] gi|194142708|gb|EDW59111.1| GJ10696 [Drosophila virilis] Back     alignment and taxonomy information
>gi|289742611|gb|ADD20053.1| mitochondrial carnitine-acylcarnitine carrier protein [Glossina morsitans morsitans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
FB|FBgn0039525 303 CG5646 [Drosophila melanogaste 0.497 0.402 0.371 4.1e-17
MGI|MGI:2147731 288 Slc25a45 "solute carrier famil 0.510 0.434 0.330 4.2e-15
RGD|1589953 286 Slc25a45 "solute carrier famil 0.510 0.437 0.330 5.4e-15
WB|WBGene00011094 285 R07B7.10 [Caenorhabditis elega 0.510 0.438 0.357 6.9e-15
UNIPROTKB|Q8N413 288 SLC25A45 "Solute carrier famil 0.510 0.434 0.323 2.7e-14
UNIPROTKB|F1RRI1 288 SLC25A45 "Uncharacterized prot 0.510 0.434 0.315 4.7e-14
UNIPROTKB|F1MZF4 288 SLC25A45 "Uncharacterized prot 0.506 0.430 0.325 6.1e-14
MGI|MGI:2145373 306 Slc25a48 "solute carrier famil 0.510 0.408 0.320 8.8e-14
UNIPROTKB|Q6ZT89 311 SLC25A48 "Solute carrier famil 0.469 0.369 0.338 3.2e-13
UNIPROTKB|E2RCY9155 SLC25A48 "Uncharacterized prot 0.469 0.741 0.322 5.6e-13
FB|FBgn0039525 CG5646 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 49/132 (37%), Positives = 74/132 (56%)

Query:   110 GVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTF-KLEGFRGFYKGFLAPMLTTGVTNAI 168
             G  G+LV HP+DTIK   Q   + +++  I   + +  G  GFY+G   P ++TG  N++
Sbjct:    16 GACGVLVAHPLDTIKVWQQAS-NSSVVTAIQQIYSRNNGVNGFYRGMFFPFISTGAINSL 74

Query:   169 FFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKT 228
              FG+YGN +R LR +  S  +Y+ +      L   N F +GS+AG + + +  P+E IK 
Sbjct:    75 LFGIYGNHLRQLRKVCHS--DYQRE-----QLEYHNMFLAGSVAGFVQSFIACPMELIKV 127

Query:   229 RLQANAGNYSMY 240
             RLQ  A  YS Y
Sbjct:   128 RLQT-ATYYSDY 138
GO:0022857 "transmembrane transporter activity" evidence=ISS
GO:0005740 "mitochondrial envelope" evidence=ISS
MGI|MGI:2147731 Slc25a45 "solute carrier family 25, member 45" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1589953 Slc25a45 "solute carrier family 25, member 45" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00011094 R07B7.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N413 SLC25A45 "Solute carrier family 25 member 45" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RRI1 SLC25A45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZF4 SLC25A45 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2145373 Slc25a48 "solute carrier family 25, member 48" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZT89 SLC25A48 "Solute carrier family 25 member 48" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCY9 SLC25A48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-16
pfam0839864 pfam08398, Parvo_coat_N, Parvovirus coat protein V 4e-10
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-05
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 95  GWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPD------KTMIQIIANTFKLEGF 148
                +  +L+    G +   V +P+D +KTR Q+         K ++      +K EG 
Sbjct: 1   SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60

Query: 149 RGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSIS 184
           RG YKG L  +L      AI+FG Y    + L    
Sbjct: 61  RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96

Length = 96
>gnl|CDD|203931 pfam08398, Parvo_coat_N, Parvovirus coat protein VP1 Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
KOG0752|consensus320 100.0
KOG0764|consensus299 100.0
KOG0753|consensus317 100.0
KOG0760|consensus302 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0758|consensus297 100.0
KOG0762|consensus311 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 99.97
KOG0761|consensus361 99.97
KOG0768|consensus323 99.97
KOG0757|consensus319 99.97
KOG0759|consensus286 99.96
KOG0770|consensus353 99.96
KOG0754|consensus294 99.96
KOG0763|consensus301 99.96
KOG0766|consensus297 99.95
KOG0764|consensus 299 99.94
KOG0765|consensus333 99.94
KOG0036|consensus463 99.94
KOG0751|consensus 694 99.94
KOG0752|consensus320 99.93
KOG0749|consensus298 99.92
PTZ00169 300 ADP/ATP transporter on adenylate translocase; Prov 99.92
KOG0750|consensus304 99.91
KOG0756|consensus299 99.91
KOG0767|consensus333 99.91
KOG0755|consensus320 99.91
KOG0753|consensus317 99.9
KOG0757|consensus 319 99.9
KOG0769|consensus308 99.89
PTZ00168 259 mitochondrial carrier protein; Provisional 99.89
KOG0759|consensus286 99.89
KOG0760|consensus 302 99.88
KOG0768|consensus323 99.88
KOG0758|consensus297 99.88
KOG0754|consensus 294 99.87
KOG0762|consensus311 99.87
KOG0751|consensus 694 99.84
KOG0761|consensus 361 99.84
KOG0769|consensus 308 99.83
KOG0756|consensus299 99.83
KOG0770|consensus 353 99.82
KOG0036|consensus 463 99.81
KOG0766|consensus297 99.8
KOG0763|consensus301 99.77
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.76
KOG0765|consensus333 99.75
KOG0750|consensus304 99.72
KOG0755|consensus320 99.72
KOG0767|consensus 333 99.66
KOG0749|consensus 298 99.63
KOG2745|consensus321 99.49
KOG1519|consensus297 99.33
KOG1519|consensus 297 98.94
KOG2745|consensus 321 98.83
KOG2954|consensus427 98.75
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 98.07
PF0839864 Parvo_coat_N: Parvovirus coat protein VP1; InterPr 97.48
KOG2954|consensus 427 97.07
>KOG0752|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.4e-38  Score=265.61  Aligned_cols=203  Identities=20%  Similarity=0.307  Sum_probs=164.5

Q ss_pred             CCCcchhhhhcchhhhhccCccccccccHHHHHHHHHhhhcccccccccHHHhhhHhhhhHHHh------hhccCCCCCC
Q psy1347          20 PIDDDDEIALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQF------TGVLYPPVDK   93 (245)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~gl~rG~~~~~~~~~~y~~~~~------~~~~~~~~~~   93 (245)
                      .+.+.+|++++.|.....  .....+.+..+.++.++++||++|||||..++.++.++|...+|      ++.... .++
T Consensus        44 ~~APLd~iKIlfQ~~~~~--~~~~k~~g~~~~~~~I~~eEG~~g~wkGn~~~~~r~~pY~avqf~aye~~k~~~~~-~~~  120 (320)
T KOG0752|consen   44 VTAPLDRIKILFQVQVEP--SKTSKYPGVIQAFKSIYREEGLRGFWKGNGPAQIRIIPYGAVQFSAYEQYKKLVLG-VDP  120 (320)
T ss_pred             hcCchhHceEEEEecccc--ccccccccHHHHHHHHHHHhchhhhhcCcccceeeeeecchhhhhHHHHhhhhhhc-cCc
Confidence            344555555555533222  22233357899999999999999999999999998888774444      321111 122


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC----CCCHHHHHHHHHHhhCcccccccchHhHHHHHHHHHhH
Q psy1347          94 SGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMP----DKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIF  169 (245)
Q Consensus        94 ~~~~~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~q~~~----~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~  169 (245)
                      ....+...+++||++||+++.+++||+|++|+|+-.+.    |+++.+++++|+++||++|||||+.|++++.+|+.++.
T Consensus       121 ~~~~~~~~~l~aGalAG~~a~~~tyPLDlvRtRLa~q~~~~~y~~l~~a~~~I~~~eGi~gfYrGl~ptllgi~Pyag~~  200 (320)
T KOG0752|consen  121 NGSLSPLVRLVAGALAGMTATLATYPLDLLRTRLAVQGELKVYRGLLHAFKTIYREEGIRGFYRGLGPTLLGIAPYAGIN  200 (320)
T ss_pred             ccccchhHHHHHHHHHHHHHHHhcCcHHHhhhheeeecccccCCcHHHHHHHHHHhcchhhhhcCcchhhheehhhhhhH
Confidence            22567999999999999999999999999999996665    89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHhhccCchhhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcccHHHHHHHHHhcCCC
Q psy1347         170 FGVYGNTIRY-LRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGN  236 (245)
Q Consensus       170 ~~~ye~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~Q~~~~~  236 (245)
                      |.+||.+|++ +....           ++.+.+.+..++||++||+++.+++||+|+||+|||+.+..
T Consensus       201 F~~Yd~lk~~~~~~~~-----------~~~~~~~~~~l~~GalAG~~aqti~yPlD~vRrrmQ~~~~~  257 (320)
T KOG0752|consen  201 FFAYDTLKKWQYLKSS-----------GNKELSNFERLLCGALAGAVAQTITYPLDTVRRRMQLGGLK  257 (320)
T ss_pred             HHHHHHHHHhhccccc-----------ccchhhhHHHHHHHHHHHHHHhhhcccHHHHHHHHhccCcc
Confidence            9999999995 33222           23567889999999999999999999999999999998753

>KOG0764|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0752|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
3kic_A 736 Crystal Structure Of Adeno-Associated Virus Serotyp 4e-05
3ntt_A 724 Structural Insights Of Adeno-Associated Virus 5. A 4e-05
4g0r_A 735 Structural Characterization Of H-1 Parvovirus: Comp 4e-04
3j1q_A 737 Structure Of Aav-Dj, A Retargeted Gene Therapy Vect 4e-04
3ng9_A 736 Structure To Function Correlations For Adeno-Associ 4e-04
>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b Length = 736 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 1  MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQAD 48
          ++ P + YLGPGN LD G P+++ D  AL HD+AY+     +Q++  D
Sbjct: 45 LVLPGYKYLGPGNGLDKGEPVNEADAAALEHDKAYD-----QQLKAGD 87
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene Therapy Vector For Cystic Fibrosis Length = 724 Back     alignment and structure
>pdb|4G0R|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison Of Infectious Virions To Replication Defective Particles Length = 735 Back     alignment and structure
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector: Cryo-Electron Microscopy At 4.5a Resolution Length = 737 Back     alignment and structure
>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated Virus Serotype 1 Length = 736 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 5e-18
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 5e-15
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 4e-11
3ng9_A 736 Capsid protein; beta barrel, single-stranded DNA V 6e-15
3ntt_A 724 Capsid protein; gene therapy vector, cystic fibros 1e-13
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 4e-12
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 5e-11
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-07
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 26/140 (18%)

Query: 108 TTGVMGLLVGHPMDTIKTRTQT-------------MPDKTMIQIIANTFKLEGFRGFYKG 154
           T   +  L+  P+DT K R Q                 + ++  I    + EG R  Y G
Sbjct: 10  TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG 69

Query: 155 FLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGA 214
            +A +       ++  G+Y           +S +++   G     +   +   +GS  GA
Sbjct: 70  LVAGLQRQMSFASVRIGLY-----------DSVKQFYTKGSEHAGI--GSRLLAGSTTGA 116

Query: 215 IITAVGAPVEAIKTRLQANA 234
           +  AV  P + +K R QA A
Sbjct: 117 LAVAVAQPTDVVKVRFQAQA 136
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A Length = 736 Back     alignment and structure
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5} Length = 724 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 99.94
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 99.92
3ng9_A 736 Capsid protein; beta barrel, single-stranded DNA V 93.03
3ntt_A 724 Capsid protein; gene therapy vector, cystic fibros 82.66
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-34  Score=246.21  Aligned_cols=177  Identities=18%  Similarity=0.264  Sum_probs=145.9

Q ss_pred             cccHHHHHHHHHhhhcccccccccHHHhhhHhhhh------HHHhhhccCCCCCCCCC--CchHHHHHHHHHHHHHHHhh
Q psy1347          45 RQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYE------VEQFTGVLYPPVDKSGW--TPVIQEVLSLYTTGVMGLLV  116 (245)
Q Consensus        45 ~~~~~~~~~~i~~~~g~~gl~rG~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~--~~~~~~~~ag~~ag~~~~~i  116 (245)
                      +.+..++++++++++|++|||||+.++++...++.      |+.++..+....+....  ...+..+++|++||+++.++
T Consensus        50 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~  129 (297)
T 1okc_A           50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF  129 (297)
T ss_dssp             CCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999988544443      22233322221111111  23567899999999999999


Q ss_pred             hccHHHHHHHHhcCC--------CCCHHHHHHHHHHhhCcccccccchHhHHHHHHHHHhHHHHHHHHHHHHHhhccCch
Q psy1347         117 GHPMDTIKTRTQTMP--------DKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSE  188 (245)
Q Consensus       117 ~~Pld~vk~r~q~~~--------~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~~~~~  188 (245)
                      ++|+|+||+|+|++.        |++.++++++|+++||++|||||+.+++++.+|.++++|.+||.+|+.+.+..    
T Consensus       130 ~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----  205 (297)
T 1okc_A          130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----  205 (297)
T ss_dssp             HHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----
T ss_pred             hCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----
Confidence            999999999999873        68999999999999999999999999999999999999999999999664321    


Q ss_pred             hhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcccHHHHHHHHHhcCC
Q psy1347         189 EYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAG  235 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~Q~~~~  235 (245)
                                ..+....+++|++||++++++++|+||||+|||++..
T Consensus       206 ----------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~  242 (297)
T 1okc_A          206 ----------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG  242 (297)
T ss_dssp             ----------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ----------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCC
Confidence                      2456788999999999999999999999999999864
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A Back     alignment and structure
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 5e-07
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 6e-06
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 8e-05
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 110 GVMGLLVGHPMDTIKTRTQTMPD----------KTMIQIIANTFKLEGFRGFYKGFLAPM 159
             +      P++ +K   Q              K +I  +    K +GF  F++G LA +
Sbjct: 17  AAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANV 76

Query: 160 LTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAV 219
           +    T A+ F       +      +  +++          +      SG  AGA     
Sbjct: 77  IRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR--------YFAGNLASGGAAGATSLCF 128

Query: 220 GAPVEAIKTRLQANAGNYSMY 240
             P++  +TRL A+ G  +  
Sbjct: 129 VYPLDFARTRLAADVGKGAAQ 149
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.97
d1okca_ 292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.91
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=99.97  E-value=1.6e-30  Score=219.02  Aligned_cols=181  Identities=18%  Similarity=0.282  Sum_probs=149.6

Q ss_pred             cccccHHHHHHHHHhhhcccccccccHHHhhhHhhhhH------HHhhhccCCCCCC--CCCCchHHHHHHHHHHHHHHH
Q psy1347          43 QVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEV------EQFTGVLYPPVDK--SGWTPVIQEVLSLYTTGVMGL  114 (245)
Q Consensus        43 ~~~~~~~~~~~~i~~~~g~~gl~rG~~~~~~~~~~y~~------~~~~~~~~~~~~~--~~~~~~~~~~~ag~~ag~~~~  114 (245)
                      ..+.+..+.++++++++|+++||+|+.+.++...++..      +.++..+......  ........++++|.+|++++.
T Consensus        47 ~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  126 (292)
T d1okca_          47 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL  126 (292)
T ss_dssp             GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHH
Confidence            33468899999999999999999999999985544442      2222222222222  222345678899999999999


Q ss_pred             hhhccHHHHHHHHhcCC--------CCCHHHHHHHHHHhhCcccccccchHhHHHHHHHHHhHHHHHHHHHHHHHhhccC
Q psy1347         115 LVGHPMDTIKTRTQTMP--------DKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISES  186 (245)
Q Consensus       115 ~i~~Pld~vk~r~q~~~--------~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~~~  186 (245)
                      ++++|+|++|+|+|.+.        +.+..+++++++++||+++||+|+.+++++.+++++++|..||.+|+.+.+..  
T Consensus       127 ~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~--  204 (292)
T d1okca_         127 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--  204 (292)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--
T ss_pred             hhhhhhhhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccccc--
Confidence            99999999999999876        67899999999999999999999999999999999999999999998664433  


Q ss_pred             chhhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcccHHHHHHHHHhcCCCC
Q psy1347         187 SEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGNY  237 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~Q~~~~~~  237 (245)
                                  .......++++++++.+++++|||+||||+|||.+....
T Consensus       205 ------------~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~  243 (292)
T d1okca_         205 ------------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK  243 (292)
T ss_dssp             ------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             ------------ccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCC
Confidence                        356788899999999999999999999999999987644
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure