Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 109
PLN03072 166
PLN03072, PLN03072, 60S ribosomal protein L12; Pro
2e-52 PTZ00105 140
PTZ00105, PTZ00105, 60S ribosomal protein L12; Pro
3e-40 smart00649 132
smart00649, RL11, Ribosomal protein L11/L12
9e-29 cd00349 131
cd00349, Ribosomal_L11, Ribosomal protein L11
9e-27 COG0080 141
COG0080, RplK, Ribosomal protein L11 [Translation,
1e-19 pfam03946 59
pfam03946, Ribosomal_L11_N, Ribosomal protein L11,
1e-17 PRK01143 163
PRK01143, rpl11p, 50S ribosomal protein L11P; Vali
8e-07
>gnl|CDD|178621 PLN03072, PLN03072, 60S ribosomal protein L12; Provisional
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Score = 161 bits (410), Expect = 2e-52
Identities = 75/98 (76%), Positives = 87/98 (88%), Gaps = 1/98 (1%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
MPPK DP++V +VY+R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T DWKGL++T
Sbjct: 1 MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 60 VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
V LT+QNRQA +SVVPSAA+L+IKALKEP RDRKKVKN
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKN 98
>gnl|CDD|240269 PTZ00105, PTZ00105, 60S ribosomal protein L12; Provisional
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Score = 130 bits (328), Expect = 3e-40
Identities = 61/72 (84%), Positives = 68/72 (94%)
Query: 26 SSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKAL 85
SSLAPK+GPLGLSPKKVGDDIAKAT DWKGLK+TV LT+QNRQA + VVP+A+SL+IKAL
Sbjct: 1 SSLAPKVGPLGLSPKKVGDDIAKATKDWKGLKVTVKLTVQNRQATVEVVPTASSLLIKAL 60
Query: 86 KEPPRDRKKVKN 97
KEPPRDRKKVKN
Sbjct: 61 KEPPRDRKKVKN 72
>gnl|CDD|197819 smart00649, RL11, Ribosomal protein L11/L12
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Score = 100 bits (251), Expect = 9e-29
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQ--AA 70
+ L+ G+ L P +G LG++ + + T D KGL I V +T+ N +
Sbjct: 1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKDKKGLPIPVKITVYNDKSFTF 60
Query: 71 ISVVPSAASLIIKALKEPPRDRKKVKN 97
I P A++L+ KA +K K
Sbjct: 61 ILKTPPASALLKKAAGIEKGSKKPGKK 87
>gnl|CDD|100101 cd00349, Ribosomal_L11, Ribosomal protein L11
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Score = 95.2 bits (238), Expect = 9e-27
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN-RQAAI 71
+ L+ G+ L P +G LG++ K + T D+KGL + V +T+ N R
Sbjct: 1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYKGLPVPVKITVYNDRSFTF 60
Query: 72 SVV-PSAASLIIKALKEPPRDRKKVKNDWS 100
V P A++L+ KA + KK +
Sbjct: 61 EVKTPPASALLKKA-AGIEKGSKKPNKEKV 89
Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the "stringent response" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation. Length = 131
>gnl|CDD|223158 COG0080, RplK, Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
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Score = 77.6 bits (192), Expect = 1e-19
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 9 EVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI-QNR 67
VK + L+ G+ + + P +G LG++ + + AT D KGL + V +T+ ++R
Sbjct: 4 VVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEKGLPVPVVITVYEDR 63
Query: 68 QAAISV-VPSAASLIIKALKEPPRDRKKVKN 97
V P A++L+ KA K KN
Sbjct: 64 SFTFIVKTPPASALLKKAAGIEKGSGKPNKN 94
>gnl|CDD|217808 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, N-terminal domain
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Score = 70.2 bits (173), Expect = 1e-17
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 12 KVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQA 69
+ L+ G+ L P +G LG++ + + AT D+KGL + V +T+ N ++
Sbjct: 1 VIKLQVPAGKANPAPPLGPALGQLGVNIMEFCKEFNAATKDYKGLPVPVKITVYNDRS 58
The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Length = 59
>gnl|CDD|234908 PRK01143, rpl11p, 50S ribosomal protein L11P; Validated
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Score = 44.5 bits (106), Expect = 8e-07
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN--RQAAISV-VP 75
GG+ L P +GPLGL+ K+V +I + T D+KG+++ V + + ++ I V +P
Sbjct: 11 GGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFKGMQVPVKVIVDTDTKKFEIEVGIP 70
Query: 76 SAASLIIKAL 85
+LI K L
Sbjct: 71 PTTALIKKEL 80
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 109
d1wiba_ 92
60S ribosomal protein L12 {Mouse (Mus musculus) [T
100.0 d1mmsa2 63
Ribosomal protein L11, N-terminal domain {Thermoto
99.97 d3cjsb1 70
Ribosomal protein L11, N-terminal domain {Thermus
99.97 d2gycg2 71
Ribosomal protein L11, N-terminal domain {Escheric
99.96 d1hc8a_ 74
Ribosomal protein L11, C-terminal domain {Bacillus
98.85 d3cjrb1 67
Ribosomal protein L11, C-terminal domain {Thermus
98.72 d1vqoi1 70
Ribosomal protein L11, C-terminal domain {Archaeon
98.7 d1mmsa1 70
Ribosomal protein L11, C-terminal domain {Thermoto
98.66 d1xbpg1 72
Ribosomal protein L11, C-terminal domain {Deinococ
98.56 d2gycg1 68
Ribosomal protein L11, C-terminal domain {Escheric
98.4
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
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class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: 60S ribosomal protein L12
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-40 Score=224.53 Aligned_cols=85 Identities=81% Similarity=1.211 Sum_probs=83.8
Q ss_pred CCCCCCCceeEEEEEEeccccCCCCCCccccCCCCCCHHHHHHHHHHHhcCCCCceeEEEEEEcCcceEEEEeCCHHHHH
Q psy13546 2 PPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLI 81 (109)
Q Consensus 2 ~pk~~~~~~~~v~l~v~aG~a~p~pplgp~LG~~Gin~~~f~k~fn~~T~~~~g~~vpV~itv~drsf~~~v~Ppts~li 81 (109)
|||+|++++++|+|+|+||+|+|+|||||+|||+|||+++||++||++|++|+|++|||+|+|+||+|+|+++||+|+||
T Consensus 8 ppK~dp~~v~~Ikl~v~gG~A~p~PplgP~LGp~Gini~~f~k~fN~~T~~~kG~~VpV~itV~dRsf~i~V~PpaS~L~ 87 (92)
T d1wiba_ 8 PPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALS 87 (92)
T ss_dssp CCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTTTSEEEEEEEEETTEEECCBCSCCCCCC
T ss_pred CCCCCCCceEEEEEEEecCccCCCCCccccccccCCCHHHHHHHHHHhhhhccCCeEeEEEEEeCceEEEEEcCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy13546 82 IKALK 86 (109)
Q Consensus 82 ~ka~g 86 (109)
++|+|
T Consensus 88 ~~aaG 92 (92)
T d1wiba_ 88 GPSSG 92 (92)
T ss_dssp CCSCC
T ss_pred HHhcC
Confidence 99987
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=7.2e-32 Score=170.61 Aligned_cols=61 Identities=16% Similarity=0.369 Sum_probs=59.7
Q ss_pred EEEEEeccccCCCCCCccccCCCCCCHHHHHHHHHHHhcCCCCceeEEEEEE-cCcceEEEE
Q psy13546 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI-QNRQAAISV 73 (109)
Q Consensus 13 v~l~v~aG~a~p~pplgp~LG~~Gin~~~f~k~fn~~T~~~~g~~vpV~itv-~drsf~~~v 73 (109)
|+|+++||+|+|+|||||+|||+|||+|+||++||++|++++|++|||+|+| +||||+|.+
T Consensus 2 ikl~v~aG~A~p~PPvGpaLG~~GiNi~~F~k~fN~~Tk~~~g~~vpV~I~v~~DrsF~f~i 63 (63)
T d1mmsa2 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFII 63 (63)
T ss_dssp EEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTSCSSEEEEEEEECTTSCEEEEE
T ss_pred eEEEEecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHhcccCCCeEeEEEEEeCCCcEEEeC
Confidence 7999999999999999999999999999999999999999999999999999 999999975
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.1e-31 Score=172.76 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=63.4
Q ss_pred CceeEEEEEEeccccCCCCCCccccCCCCCCHHHHHHHHHHHhcCCCCceeEEEEEE-cCcceEEEE
Q psy13546 8 TEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI-QNRQAAISV 73 (109)
Q Consensus 8 ~~~~~v~l~v~aG~a~p~pplgp~LG~~Gin~~~f~k~fn~~T~~~~g~~vpV~itv-~drsf~~~v 73 (109)
+..++|+|+++||+|+|+|||||+|||+|||+|+||++||++|++++|..|||+|+| +||||+|++
T Consensus 3 kv~~~ikl~v~aG~A~P~PPvGpaLG~~GiNi~~Fck~fN~~T~~~~g~~vpv~Itv~~Drsf~f~i 69 (70)
T d3cjsb1 3 KVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVT 69 (70)
T ss_dssp CEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGCSCEEEEEEEEETTSCEEEEE
T ss_pred ceeeEEEEEeecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHHHhcCCCceeeEEEEeCCCcEEEEe
Confidence 346899999999999999999999999999999999999999999999999999999 999999986
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4.6e-32 Score=175.05 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=61.4
Q ss_pred eeEEEEEEeccccCCCCCCccccCCCCCCHHHHHHHHHHHhcCCC-CceeEEEEEE-cCcceEEEE
Q psy13546 10 VKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWK-GLKITVCLTI-QNRQAAISV 73 (109)
Q Consensus 10 ~~~v~l~v~aG~a~p~pplgp~LG~~Gin~~~f~k~fn~~T~~~~-g~~vpV~itv-~drsf~~~v 73 (109)
..+|+|+++||+|+|+||+||+|||+|||+|+||++||++|++++ |++|||+|+| +||||+|++
T Consensus 4 ~~~ikl~i~aG~A~PaPPvGpaLG~~GiNi~~F~k~fN~~T~~~~~G~~vpV~Itv~~Drsf~f~i 69 (71)
T d2gycg2 4 QAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVT 69 (71)
T ss_dssp CCCCCCCBCTTCCCSSSSTTTTTTSSSCCSSSSSTTTTTTSCSSCTTCCBCCBCCCCSSSCCCCBC
T ss_pred eEEEEEEEecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHhhccCCCCEEEEEEEEeCCCeEEEEE
Confidence 468999999999999999999999999999999999999999985 9999999999 999999976
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
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class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.85 E-value=1.6e-10 Score=73.77 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=33.3
Q ss_pred EEEE-eCCHHHHHHHHcCCCCCCcCCcCCCceeEeecCCCC
Q psy13546 70 AISV-VPSAASLIIKALKEPPRDRKKVKNDWSWHMLPHNDC 109 (109)
Q Consensus 70 ~~~v-~Ppts~li~ka~g~~~g~~kk~~~~~~vG~is~~q~ 109 (109)
+|++ +||+||||+|++|+.+|++++++ +.+|+||++|+
T Consensus 1 TF~~ktPP~s~llkkaagi~kGs~~p~~--~~vG~it~~qi 39 (74)
T d1hc8a_ 1 TFITKTPPAAVLLKKAAGIESGSGEPNR--NKVATIKRDKV 39 (74)
T ss_dssp CCCCCCCCHHHHHHHHHTCSCCCSSTTT--CCCEEECHHHH
T ss_pred CccccCCCHHHHHHHHHCCCcCcCCCCC--eeeeEEcHHHH
Confidence 3667 99999999999999999987654 77999999885
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]}
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class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=9.1e-10 Score=68.98 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=14.1
Q ss_pred eCCHHHHHHHHcCCCCCCcCCcCCCceeEeecCCCC
Q psy13546 74 VPSAASLIIKALKEPPRDRKKVKNDWSWHMLPHNDC 109 (109)
Q Consensus 74 ~Ppts~li~ka~g~~~g~~kk~~~~~~vG~is~~q~ 109 (109)
|||+||||+|+||+.+|++++++ +.+|+||++||
T Consensus 1 TPP~s~llkkaagi~kGs~~p~~--e~vG~it~~~i 34 (67)
T d3cjrb1 1 TPPASYLIRKAAGLEKGAHKPGR--EKVGRITWEQV 34 (67)
T ss_dssp CCCHHHHHC---------------------CCCSGG
T ss_pred CCcHHHHHHHHHCCCcCCCCCCC--cccceecHHHH
Confidence 79999999999999999987654 78999999986
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]}
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class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.70 E-value=2e-09 Score=67.76 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=30.4
Q ss_pred eCCHHHHHHHHcCCCCCCcCCcCCCceeEeecCCCC
Q psy13546 74 VPSAASLIIKALKEPPRDRKKVKNDWSWHMLPHNDC 109 (109)
Q Consensus 74 ~Ppts~li~ka~g~~~g~~kk~~~~~~vG~is~~q~ 109 (109)
+||+|+||+|+||+++|++.+++ +.+|+||++|+
T Consensus 2 tPp~s~ll~ka~gi~kGs~~p~~--~~vg~it~~~i 35 (70)
T d1vqoi1 2 VPPTAELIKDEAGFETGSGEPQE--DFVADLSVDQV 35 (70)
T ss_dssp CCCHHHHHHHHTCCSSCCSSTTT--SCCEEECHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCC--eeeeeeCHHHH
Confidence 79999999999999999987644 78999999885
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=2.7e-09 Score=67.26 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=30.4
Q ss_pred eCCHHHHHHHHcCCCCCCcCCcCCCceeEeecCCCC
Q psy13546 74 VPSAASLIIKALKEPPRDRKKVKNDWSWHMLPHNDC 109 (109)
Q Consensus 74 ~Ppts~li~ka~g~~~g~~kk~~~~~~vG~is~~q~ 109 (109)
+||+||||+||+|+.+|+..+++ +.+|+||++|+
T Consensus 2 tPP~s~likkaagi~kGs~~p~~--~~vg~it~~qv 35 (70)
T d1mmsa1 2 TPPASFLLKKAAGIEKGSSEPKR--KIVGKVTRKQI 35 (70)
T ss_dssp CCCHHHHHHHHHTCSSCCSSTTT--SCCEEECHHHH
T ss_pred CCCHHHHHHHHHCCCcCCCCCCC--cccCeEcHHHH
Confidence 69999999999999999987644 77999999885
>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
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class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.56 E-value=6.2e-09 Score=65.80 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=29.6
Q ss_pred CCHHHHHHHHcCCCCCCcCCcCCCceeEeecCCCC
Q psy13546 75 PSAASLIIKALKEPPRDRKKVKNDWSWHMLPHNDC 109 (109)
Q Consensus 75 Ppts~li~ka~g~~~g~~kk~~~~~~vG~is~~q~ 109 (109)
||+||||+|+||+++|+..+ +.+++|+||++||
T Consensus 1 Pp~s~ll~kaagi~kGs~~p--~~~~vG~it~~~i 33 (72)
T d1xbpg1 1 PPMSYLIRKAAGIGKGSSTP--NKAKVGKLNWDQV 33 (72)
T ss_pred CCHHHHHHHHHCcCcCCCCC--CCchhcccCHHHH
Confidence 89999999999999999765 4588999999985
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=7e-09 Score=64.98 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCHHHHHHHHcCCCCCCcCCcCCCceeEeecCCCC
Q psy13546 75 PSAASLIIKALKEPPRDRKKVKNDWSWHMLPHNDC 109 (109)
Q Consensus 75 Ppts~li~ka~g~~~g~~kk~~~~~~vG~is~~q~ 109 (109)
||+|+||+|+||+.+|++.+++ +.+|+||++|+
T Consensus 1 PP~s~llkkaagi~kGs~~p~~--~~vg~it~~qv 33 (68)
T d2gycg1 1 PPAAVLLKKAAGIKSGSGKPNK--DKVGKISRAQL 33 (68)
T ss_dssp CCSSTTTGGGSCSSSCCSSTTS--SCCCCCCSHHH
T ss_pred CCHHHHHHHHHCCCcCCCCCCC--cEeeeecHHHH
Confidence 8999999999999999987654 77999999985
