Psyllid ID: psy13568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
Protein Sequence
MEVRNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRFDRGNSNC
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccEEEEEEcccEEEEEEccEEEEEccEEEEEEcccccHHHHHHHHHHcccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEccccccccccccccccHHHHHcccccHHHHcccccccccEEEEEcccccEEEEEEEccccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEcccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHcccccEEEEEcccEEEEEEccHEEEcccEEEEccccccHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEHEccccEEEEHHHHccccEEEEHHHHcccccEEEEEEcccccEEEEHHHcccccEEEEHHHHcccccEEEHHHHccccEEEcHHHHcccccEEcHHHHccccEEEcHHHHcccccEccHHHHcccccEEcHHHHcccccEEcHHHHcccccEEcHHHcccccEEEcHHHcccccEEEEHHHcccccEEEEHHHcccccEEEEHHHcccccEEEEHHHcccccEEEEHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccc
Coil and Loop (DISEMBL)
MEVRNSQFAAFIDEFTSNTFVMVVIsdpnilevEHSHVRFLGNLVLNLWdcggqeafMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAmlhnspdskvfCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVishcqrkehrdiHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRFDRGNSNC
Flexible Loop (DISEMBL)
MEVRNSQFAAfideftsnTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFnrdhfrlrfdrgnsnc
Low Complexity Region (SEG)
MEVRNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRFDRGNSNC
Disordered region (IsUnstruct)
*******FAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRF*******
Disordered Region (DISOPRED)
*****SQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHC*****************IKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRD***********************************************************DHFRLVYSLFNRDHFRLVYSLFNRDHF***************************************************************************Y***N***********************************N*DHFRLVYSLFNR**************
Disordered Region (DISEMBL)
MEVRNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRFDRGNSNC
Disordered Region (DISPRO)
****NSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRFDR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVRNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLRFDRGNSNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	485	2.2.26 [Sep-21-2011]
Q63486	313	Ras-related GTP-binding p	yes	N/A	0.373	0.578	0.647	2e-75
Q80X95	313	Ras-related GTP-binding p	yes	N/A	0.373	0.578	0.647	2e-75
Q7L523	313	Ras-related GTP-binding p	yes	N/A	0.373	0.578	0.647	2e-75
Q3SX43	313	Ras-related GTP-binding p	no	N/A	0.373	0.578	0.647	2e-75
Q5VZM2	374	Ras-related GTP-binding p	no	N/A	0.385	0.5	0.630	3e-75
Q63487	374	Ras-related GTP-binding p	no	N/A	0.385	0.5	0.625	8e-75
Q6NTA4	374	Ras-related GTP-binding p	no	N/A	0.385	0.5	0.625	8e-75
Q54IK1	301	Ras-related GTP-binding p	yes	N/A	0.346	0.558	0.595	3e-63
O74824	308	GTP-binding protein gtr1	yes	N/A	0.362	0.571	0.552	1e-56
Q00582	310	GTP-binding protein GTR1	yes	N/A	0.360	0.564	0.417	2e-41

>sp|Q63486|RRAGA_RAT Ras-related GTP-binding protein A OS=Rattus norvegicus GN=Rraga PE=1 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43  IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+                       
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH Q KE 
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death.
Rattus norvegicus (taxid: 10116)

>sp|Q80X95|RRAGA_MOUSE Ras-related GTP-binding protein A OS=Mus musculus GN=Rraga PE=2 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43  IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+                       
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH Q KE 
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death.

Mus musculus (taxid: 10090)

>sp|Q7L523|RRAGA_HUMAN Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43  IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+                       
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH Q KE 
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death. May alternatively act as a cellular target for adenovirus E3-14.7K, an inhibitor of TNF-alpha functions, thereby affecting cell death.

Homo sapiens (taxid: 9606)

>sp|Q3SX43|RRAGA_BOVIN Ras-related GTP-binding protein A OS=Bos taurus GN=RRAGA PE=2 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/213 (64%), Positives = 160/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 43  IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+                       
Sbjct: 103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRT 162

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH Q KE 
Sbjct: 163 SIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ 222

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 223 RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVR 255

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death.

Bos taurus (taxid: 9913)

>sp|Q5VZM2|RRAGB_HUMAN Ras-related GTP-binding protein B OS=Homo sapiens GN=RRAGB PE=1 SV=1

 Score =  283 bits (723), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/219 (63%), Positives = 160/219 (73%), Gaps = 32/219 (14%)

Query: 25  ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES 84
           + +    +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVES
Sbjct: 98  VGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVES 157

Query: 85  RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------- 127
           REL++D+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+                 
Sbjct: 158 RELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLE 217

Query: 128 ---------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISH 172
                          AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH
Sbjct: 218 CSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISH 277

Query: 173 CQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
            Q KE RD HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 278 YQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVR 316

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway.

Homo sapiens (taxid: 9606)

>sp|Q63487|RRAGB_RAT Ras-related GTP-binding protein B OS=Rattus norvegicus GN=RragB PE=1 SV=1

 Score =  281 bits (719), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 160/219 (73%), Gaps = 32/219 (14%)

Query: 25  ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES 84
           + +    +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVES
Sbjct: 98  VGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVES 157

Query: 85  RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------- 127
           REL++D+HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+                 
Sbjct: 158 RELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLE 217

Query: 128 ---------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISH 172
                          AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH
Sbjct: 218 CSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISH 277

Query: 173 CQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
            Q KE RD HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 278 YQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVR 316

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q6NTA4|RRAGB_MOUSE Ras-related GTP-binding protein B OS=Mus musculus GN=Rragb PE=2 SV=1

 Score =  281 bits (719), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 160/219 (73%), Gaps = 32/219 (14%)

Query: 25  ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES 84
           + +    +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVES
Sbjct: 98  VGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVES 157

Query: 85  RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------- 127
           REL++D+HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+                 
Sbjct: 158 RELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLE 217

Query: 128 ---------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISH 172
                          AWSSIVYQLIPNV++LE +L  FA +++ DEVLLFERATFLVISH
Sbjct: 218 CSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISH 277

Query: 173 CQRKEHRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
            Q KE RD HRFEKISNIIKQFKLSC  + + F     R
Sbjct: 278 YQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVR 316

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway.

Mus musculus (taxid: 10090)

>sp|Q54IK1|RRAGA_DICDI Ras-related GTP-binding protein A OS=Dictyostelium discoideum GN=ragA PE=2 SV=1

 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 142/200 (71%), Gaps = 32/200 (16%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQE F+E+Y T+QRD+IFRNV VLIYVFD+ESRE  +D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEGFLESYLTTQRDHIFRNVEVLIYVFDIESREHQKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +  Y+SC+EA+  NS D+K+FCLIHK+DLV E+QRD                        
Sbjct: 98  IKNYKSCIEAISQNSKDAKIFCLIHKMDLVPEDQRDTLFKNKEQEIRQASLPLKPTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVK LE +L  F  + + DEV+LFE+ATFLVISH  RK H
Sbjct: 158 SIWDETLYKAWSSIVYSLIPNVKVLEYNLDKFCKICEADEVVLFEKATFLVISHSARKVH 217

Query: 179 RDIHRFEKISNIIKQFKLSC 198
           +D+HRFEKIS IIKQF LSC
Sbjct: 218 KDVHRFEKISTIIKQFFLSC 237

Dictyostelium discoideum (taxid: 44689)

>sp|O74824|GTR1_SCHPO GTP-binding protein gtr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtr1 PE=3 SV=1

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 139/210 (66%), Gaps = 34/210 (16%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           +++EHSHVRFLGNLVLNLWDCGGQEAFMENY ++QRD+IFRNV VLIYVFDVESRE +RD
Sbjct: 38  IDIEHSHVRFLGNLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           L  +++CLEA + NSP ++VFCLIHK+DLV E+ RD+                       
Sbjct: 98  LVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETTCLAT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVIS--HCQRK 176
                    AWS+IVY LIPN   LE  L  FA   +  EV+LFER TFLVIS    +  
Sbjct: 158 SIWDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAEAAEVILFERTTFLVISSYSSESN 217

Query: 177 EHRDIHRFEKISNIIKQFKLSCRLVYSLFN 206
              D HRFEKISNI+KQFKLSC  + + F 
Sbjct: 218 PATDAHRFEKISNIVKQFKLSCSKMQAQFT 247

GTPase. Component of the GSE complex, a GTPase complex required for intracellular sorting of GAP1 out of the endosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q00582|GTR1_YEAST GTP-binding protein GTR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GTR1 PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 126/223 (56%), Gaps = 48/223 (21%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSH+RFLGN+ LNLWDCGGQ+ FMENYFT Q+D+IF+ V VLI+VFDVES E+ +D
Sbjct: 42  IDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKD 101

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD------------------------ 126
           +  +   L+ +   SPD+K+F L+HK+DLV  ++R+                        
Sbjct: 102 IEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 161

Query: 127 -----------VAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQR 175
                       AWS IV  LIPN+   + +L  F  +M+  E++LFER TFLVI     
Sbjct: 162 FPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNG 221

Query: 176 KEHRDIH-------------RFEKISNIIKQFKLSCRLVYSLF 205
           +   + H             RFEKISNI+K FK SC  + S F
Sbjct: 222 ENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGF 264

GTPase component of the GSE complex, a GTPase complex required for intracellular sorting of GAP1 out of the endosome. Functionally associated with the inorganic phosphate transporter PHO84. It is probably required for modulation of PHO84 or involved in its intracellular localization.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
345485025	306	PREDICTED: ras-related GTP-binding prote	0.373	0.591	0.685	2e-78
91092538	308	PREDICTED: similar to Ras-related GTP bi	0.373	0.587	0.671	3e-77
307174417	306	Ras-related GTP-binding protein A [Campo	0.373	0.591	0.671	3e-77
322794837	272	hypothetical protein SINV_13568 [Solenop	0.373	0.665	0.676	3e-77
383847723	306	PREDICTED: ras-related GTP-binding prote	0.373	0.591	0.661	4e-77
340719253	306	PREDICTED: ras-related GTP-binding prote	0.373	0.591	0.666	5e-77
307215300	289	Ras-related GTP-binding protein A [Harpe	0.373	0.626	0.671	6e-77
110764304	306	PREDICTED: ras-related GTP-binding prote	0.373	0.591	0.661	6e-77
242013267	313	conserved hypothetical protein [Pediculu	0.360	0.559	0.671	9e-77
157115327	356	hypothetical protein AaeL_AAEL001188 [Ae	0.375	0.511	0.658	1e-76

>gi|345485025|ref|XP_001605773.2| PREDICTED: ras-related GTP-binding protein A-like [Nasonia vitripennis]

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 163/213 (76%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSPD+KVFCLIHK+DLV E+QRD                        
Sbjct: 98  MHYYQSCLEAILQNSPDAKVFCLIHKMDLVQEDQRDSIFREREEDLRRLSLPLQCTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL+ FA ++D DEVLLFERATFLVISHCQR+ H
Sbjct: 158 SIWDETLYRAWSSIVYMLIPNVKELEQSLNQFANIIDADEVLLFERATFLVISHCQRRYH 217

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F+    R
Sbjct: 218 RDVHRFEKVSNIIKQFKLSCSKLAAQFSSMEVR 250

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092538|ref|XP_967850.1| PREDICTED: similar to Ras-related GTP binding A [Tribolium castaneum] gi|270006620|gb|EFA03068.1| hypothetical protein TcasGA2_TC010924 [Tribolium castaneum]

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 161/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESREL++D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELEKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++KVFCLIHK+DLV E+QR++                       
Sbjct: 98  MHYYQSCLEAILQNSPEAKVFCLIHKMDLVTEDQREIIFKEREADLKRLSLPLECTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELE SL  FA ++D DEVLLFERATFLVISHCQRK H
Sbjct: 158 SIWDETLYRAWSSIVYMLIPNVKELENSLQQFANIVDADEVLLFERATFLVISHCQRKHH 217

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 218 RDVHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 250

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174417|gb|EFN64928.1| Ras-related GTP-binding protein A [Camponotus floridanus]

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 162/213 (76%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD                        
Sbjct: 98  MHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDYIFREREEDLKRLSLPLECTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL+ FA ++D DEVLLFERATFLVISHCQR+ H
Sbjct: 158 SIWDETLYRAWSSIVYMLIPNVKELEQSLNQFANIIDADEVLLFERATFLVISHCQRQFH 217

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 218 RDVHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 250

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794837|gb|EFZ17784.1| hypothetical protein SINV_13568 [Solenopsis invicta]

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 144/213 (67%), Positives = 162/213 (76%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 34  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 93

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD                        
Sbjct: 94  MHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDYIFREREEDLKRLSLPLDCTCFRT 153

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL+ FA ++D DEVLLFERATFLVISHCQRK H
Sbjct: 154 SIWDETLYRAWSSIVYMLIPNVKELEQSLNQFANIIDADEVLLFERATFLVISHCQRKFH 213

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 214 RDVHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 246

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847723|ref|XP_003699502.1| PREDICTED: ras-related GTP-binding protein A-like [Megachile rotundata]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 161/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+                       
Sbjct: 98  MHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDIIFREREEDLKRLSLPLECTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL  F  ++D DEVLLFERATFLVIS+CQR+ H
Sbjct: 158 SIWDETLYRAWSSIVYMLIPNVKELEQSLKQFTNIIDADEVLLFERATFLVISYCQRQHH 217

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 218 RDVHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 250

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719253|ref|XP_003398070.1| PREDICTED: ras-related GTP-binding protein A-like isoform 1 [Bombus terrestris] gi|340719255|ref|XP_003398071.1| PREDICTED: ras-related GTP-binding protein A-like isoform 2 [Bombus terrestris] gi|350408830|ref|XP_003488529.1| PREDICTED: ras-related GTP-binding protein A-like [Bombus impatiens]

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 142/213 (66%), Positives = 161/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+                       
Sbjct: 98  MHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFREREEDLKRLSLPLECTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL  F  ++D DEVLLFERATFLVIS+CQR+ H
Sbjct: 158 SIWDETLYRAWSSIVYMLIPNVKELEQSLKQFTNIIDADEVLLFERATFLVISYCQRQHH 217

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RDIHRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 218 RDIHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 250

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215300|gb|EFN90032.1| Ras-related GTP-binding protein A [Harpegnathos saltator]

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 162/213 (76%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 21  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 80

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD                        
Sbjct: 81  MHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDFIFREREEDLKRLSLPLECTCFRT 140

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL+ FA ++D DEVLLFERATFLVISHCQR+ H
Sbjct: 141 SIWDETLYRAWSSIVYMLIPNVKELEQSLNQFANIIDADEVLLFERATFLVISHCQRQFH 200

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 201 RDVHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 233

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110764304|ref|XP_001119898.1| PREDICTED: ras-related GTP-binding protein A [Apis mellifera] gi|380017585|ref|XP_003692733.1| PREDICTED: ras-related GTP-binding protein A-like [Apis florea]

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 161/213 (75%), Gaps = 32/213 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMENYF SQRDNIFRNV VLIYVFDVESRELD+D
Sbjct: 38  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRELDKD 97

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++K+FCL+HK+DLV E+QRD+                       
Sbjct: 98  MHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFREREEDLKRLSLPLECTCFRT 157

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWSSIVY LIPNVKELEQSL  F  ++D DEVLLFERATFLVIS+CQR+ H
Sbjct: 158 SIWDETLYRAWSSIVYMLIPNVKELEQSLKQFTNIIDADEVLLFERATFLVISYCQRQHH 217

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           RD+HRFEK+SNIIKQFKLSC  + + F     R
Sbjct: 218 RDVHRFEKVSNIIKQFKLSCSKLAAQFQSMEVR 250

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013267|ref|XP_002427333.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511686|gb|EEB14595.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 164/207 (79%), Gaps = 32/207 (15%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQEAFMEN+F SQRDNIF+NV VLIYVFDVESRELD+D
Sbjct: 44  IDVEHSHVRFLGNLVLNLWDCGGQEAFMENFFASQRDNIFKNVEVLIYVFDVESRELDKD 103

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           +HYYQSCLEA+L NSP++KVFCLIHK+DLV E+QRD+                       
Sbjct: 104 MHYYQSCLEAILQNSPEAKVFCLIHKMDLVQEDQRDIIFRERDEDLKRLSKPLQCTCFRT 163

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKEH 178
                    AWS+IVY+LIPNV+ELEQSL+ FA ++D DEVLLFE+ATFLVISHC+R+EH
Sbjct: 164 SIWDETLYRAWSNIVYKLIPNVQELEQSLNEFANIIDADEVLLFEKATFLVISHCERREH 223

Query: 179 RDIHRFEKISNIIKQFKLSCRLVYSLF 205
           RD+HRFEK+SNIIKQFKLSC  + + F
Sbjct: 224 RDVHRFEKVSNIIKQFKLSCSRLAAQF 250

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115327|ref|XP_001658202.1| hypothetical protein AaeL_AAEL001188 [Aedes aegypti] gi|108883525|gb|EAT47750.1| AAEL001188-PA [Aedes aegypti]

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 161/214 (75%), Gaps = 32/214 (14%)

Query: 30  ILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDR 89
            ++VEHSHVRFLGNLVLNLWDCGGQE+FME YF SQ+DNIFRNV VLIYVFDVESRELD+
Sbjct: 37  TIDVEHSHVRFLGNLVLNLWDCGGQESFMEQYFASQKDNIFRNVEVLIYVFDVESRELDK 96

Query: 90  DLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---------------------- 127
           D+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E QRD+                      
Sbjct: 97  DMHYYQSCLEAILQNSPDAKIFCLVHKMDLVAEEQRDIIFKEREEDLKRLSKPLECTAFR 156

Query: 128 ----------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKE 177
                     AWSSIVYQLIPNVK LE SL+ FA ++D DEVLLFERATFLVISHCQRK+
Sbjct: 157 TSIWDETLYRAWSSIVYQLIPNVKALEHSLNYFANVVDADEVLLFERATFLVISHCQRKQ 216

Query: 178 HRDIHRFEKISNIIKQFKLSCRLVYSLFNRDHFR 211
           HRD HRFEK+SNIIKQFKLSC  + + F+    R
Sbjct: 217 HRDSHRFEKVSNIIKQFKLSCSKLGAKFSSMEVR 250

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
UNIPROTKB|F1NS58	296	RRAGB "Uncharacterized protein	0.204	0.334	0.828	6.7e-73
UNIPROTKB|F1NS59	315	RRAGB "Uncharacterized protein	0.2	0.307	0.824	4.7e-72
UNIPROTKB|Q3SX43	313	RRAGA "Ras-related GTP-binding	0.2	0.309	0.824	6e-72
UNIPROTKB|Q7L523	313	RRAGA "Ras-related GTP-binding	0.2	0.309	0.824	6e-72
UNIPROTKB|F2Z5Q5	314	RRAGA "Uncharacterized protein	0.2	0.308	0.824	6e-72
MGI|MGI:1915691	313	Rraga "Ras-related GTP binding	0.2	0.309	0.824	6e-72
RGD|619804	313	Rraga "Ras-related GTP binding	0.2	0.309	0.824	6e-72
UNIPROTKB|E2R2U6	377	RRAGB "Uncharacterized protein	0.226	0.291	0.738	9.7e-72
UNIPROTKB|F6XMW7	374	RRAGB "Uncharacterized protein	0.226	0.294	0.738	9.7e-72
DICTYBASE|DDB_G0288701	301	ragA "Ras-related GTP-binding	0.208	0.335	0.683	2e-61

UNIPROTKB|F1NS58 RRAGB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 466 (169.1 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 82/99 (82%), Positives = 94/99 (94%)

Query:    29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELD 88
             NI +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL+
Sbjct:    24 NIFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELE 83

Query:    89 RDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +D+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:    84 KDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 122

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NS59 RRAGB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 458 (166.3 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 80/97 (82%), Positives = 93/97 (95%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct:    45 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 104

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   105 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 141

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3SX43 RRAGA "Ras-related GTP-binding protein A" [Bos taurus (taxid:9913)]

 Score = 458 (166.3 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 80/97 (82%), Positives = 93/97 (95%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct:    43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 139

GO:0005764 "lysosome" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q7L523 RRAGA "Ras-related GTP-binding protein A" [Homo sapiens (taxid:9606)]

 Score = 458 (166.3 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 80/97 (82%), Positives = 93/97 (95%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct:    43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 139

GO:0006915 "apoptotic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0019048 "virus-host interaction" evidence=IDA

GO:0045919 "positive regulation of cytolysis" evidence=IDA

GO:0051219 "phosphoprotein binding" evidence=IDA

GO:0008219 "cell death" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0071230 "cellular response to amino acid stimulus" evidence=IMP

GO:0032008 "positive regulation of TOR signaling cascade" evidence=NAS

GO:0034613 "cellular protein localization" evidence=IMP

GO:0005764 "lysosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F2Z5Q5 RRAGA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 458 (166.3 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 80/97 (82%), Positives = 93/97 (95%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct:    44 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 103

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   104 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 140

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045919 "positive regulation of cytolysis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1915691 Rraga "Ras-related GTP binding A" [Mus musculus (taxid:10090)]

 Score = 458 (166.3 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 80/97 (82%), Positives = 93/97 (95%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct:    43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 139

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0008219 "cell death" evidence=ISO

GO:0019048 "virus-host interaction" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0042268 "regulation of cytolysis" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045919 "positive regulation of cytolysis" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051219 "phosphoprotein binding" evidence=ISO

GO:0071230 "cellular response to amino acid stimulus" evidence=ISO

RGD|619804 Rraga "Ras-related GTP binding A" [Rattus norvegicus (taxid:10116)]

 Score = 458 (166.3 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 80/97 (82%), Positives = 93/97 (95%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VLIYVFDVESREL++D
Sbjct:    43 IDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKD 102

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             +HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   103 MHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 139

GO:0005525 "GTP binding" evidence=ISO;ISS;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008219 "cell death" evidence=ISO;ISS

GO:0019048 "virus-host interaction" evidence=ISO;ISS

GO:0034613 "cellular protein localization" evidence=ISO;ISS

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045919 "positive regulation of cytolysis" evidence=ISO;ISS

GO:0046982 "protein heterodimerization activity" evidence=ISO;ISS

GO:0051219 "phosphoprotein binding" evidence=ISO;ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISO;ISS

UNIPROTKB|E2R2U6 RRAGB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 460 (167.0 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
 Identities = 82/111 (73%), Positives = 99/111 (89%)

Query:    18 NTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVL 76
             +T+ +V  + +    +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VL
Sbjct:    93 STYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVL 152

Query:    77 IYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             IYVFDVESREL++D+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   153 IYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 203

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6XMW7 RRAGB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 460 (167.0 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
 Identities = 82/111 (73%), Positives = 99/111 (89%)

Query:    18 NTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVL 76
             +T+ +V  + +    +VEHSHVRFLGNLVLNLWDCGGQ+ FMENYFTSQRDNIFRNV VL
Sbjct:    90 STYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVL 149

Query:    77 IYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV 127
             IYVFDVESREL++D+HYYQSCLEA+L NSPD+K+FCL+HK+DLV E+QRD+
Sbjct:   150 IYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDL 200

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

DICTYBASE|DDB_G0288701 ragA "Ras-related GTP-binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 390 (142.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 69/101 (68%), Positives = 87/101 (86%)

Query:    31 LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
             ++VEHSHVRFLGNLVLNLWDCGGQE F+E+Y T+QRD+IFRNV VLIYVFD+ESRE  +D
Sbjct:    38 IDVEHSHVRFLGNLVLNLWDCGGQEGFLESYLTTQRDHIFRNVEVLIYVFDIESREHQKD 97

Query:    91 LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSS 131
             +  Y+SC+EA+  NS D+K+FCLIHK+DLV E+QRD  + +
Sbjct:    98 IKNYKSCIEAISQNSKDAKIFCLIHKMDLVPEDQRDTLFKN 138

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74824	GTR1_SCHPO	No assigned EC number	0.5523	0.3628	0.5714	yes	N/A
Q54IK1	RRAGA_DICDI	No assigned EC number	0.595	0.3463	0.5581	yes	N/A
Q7L523	RRAGA_HUMAN	No assigned EC number	0.6478	0.3731	0.5782	yes	N/A
Q63486	RRAGA_RAT	No assigned EC number	0.6478	0.3731	0.5782	yes	N/A
Q80X95	RRAGA_MOUSE	No assigned EC number	0.6478	0.3731	0.5782	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	485
cd11384	286	cd11384, RagA_like, Rag GTPase, subfamily of Ras-r	1e-100
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	5e-65
cd09915	175	cd09915, Rag, Rag GTPase subfamily of Ras-related	6e-18
cd11384	286	cd11384, RagA_like, Rag GTPase, subfamily of Ras-r	5e-10
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-04
pfam00071	162	pfam00071, Ras, Ras family	0.001
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.002
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	0.003

>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

 Score =  302 bits (777), Expect = e-100
 Identities = 128/202 (63%), Positives = 148/202 (73%), Gaps = 34/202 (16%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSHVRFLGNLVLNLWDCGGQ+AFMENYFTSQRD+IFRNV VLIYVFDVESREL++D
Sbjct: 35  IDVEHSHVRFLGNLVLNLWDCGGQDAFMENYFTSQRDHIFRNVEVLIYVFDVESRELEKD 94

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----------------------- 127
           L Y++SCLEA+  NSPD+KVF LIHK+DLV E++R+                        
Sbjct: 95  LTYFRSCLEALRQNSPDAKVFVLIHKMDLVQEDEREAVFERKEKELRRLSEPLEVTCFPT 154

Query: 128 ---------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKE- 177
                    AWSSIVY LIPN++ LE +L  FA + + DEV+LFERATFLVISH  RKE 
Sbjct: 155 SIWDETLYKAWSSIVYSLIPNIQVLESNLKKFADICEADEVVLFERATFLVISHSSRKEA 214

Query: 178 -HRDIHRFEKISNIIKQFKLSC 198
              D HRFEKISNIIKQFKLSC
Sbjct: 215 SALDPHRFEKISNIIKQFKLSC 236

RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 286

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score =  209 bits (534), Expect = 5e-65
 Identities = 90/195 (46%), Positives = 112/195 (57%), Gaps = 35/195 (17%)

Query: 32  EVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDL 91
           +VE SHVRFLGNL LNLWDC GQ+ FMENY T Q+++IF NV VLIYVFDVESRE + DL
Sbjct: 36  DVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDL 95

Query: 92  HYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------------------------ 127
                 +EA+   SP++KVF LIHK+DL+ E++R                          
Sbjct: 96  ATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDERKEIFEDRKEEIIEEIEDFGIEDLTFF 155

Query: 128 -----------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRK 176
                      AWS IV +LIPN+  LE  L    +  + +EV LFER+TFLVI+   R 
Sbjct: 156 LTSIWDHSLYKAWSKIVQKLIPNLSTLENLLKKLGSSSNAEEVFLFERSTFLVIATDSRS 215

Query: 177 EHRDIHRFEKISNII 191
                 R+EK SNII
Sbjct: 216 PVDIPQRYEKCSNII 230

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases

 Score = 81.1 bits (200), Expect = 6e-18
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 32  EVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDL 91
           +VEHSH+ FLGN  LNLWDC GQ+ F E   T  +++IF+ V  LIYV DV+  E  + +
Sbjct: 36  DVEHSHLSFLGNXTLNLWDCPGQDVFFE--PTKDKEHIFQXVGALIYVIDVQD-EYLKAI 92

Query: 92  HYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQR 125
                 L+     +PD+ +  LIHK+D +  +++
Sbjct: 93  TILAKALKQAYKVNPDANIEVLIHKVDGLSLDKK 126

Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175

>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

 Score = 59.9 bits (146), Expect = 5e-10
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query: 1   MEVRNSQFAAFIDEFTSNTFVMVVISDPNI 30
           MEVRNS F+AFIDEFTSNT++MVV+SDP+I
Sbjct: 246 MEVRNSNFSAFIDEFTSNTYIMVVMSDPSI 275

RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 286

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 27/114 (23%)

Query: 25  ISDPNILEVEHSHVRFLGNLV---------LNLWDCGGQEAFMENYFTSQRDNIFRN-VA 74
           +SDP +       V F   L+         L LWD  GQE      F S   + +RN V 
Sbjct: 30  VSDPTV------GVDFFSRLIEIEPGVRIKLQLWDTAGQER-----FRSITRSYYRNSVG 78

Query: 75  VLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDLVHENQRDV 127
           VL+ VFD+ +RE    +H +    EA  H  P   VF L+ HK DL  E+QR V
Sbjct: 79  VLL-VFDITNRESFEHVHDWLE--EARSHIQPHRPVFILVGHKCDL--ESQRQV 127

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 27/122 (22%)

Query: 15  FTSNTFVMVVISDPNI--------LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQR 66
           FT N F       P I        +EV+   V+      L +WD  GQE F      + R
Sbjct: 19  FTQNKFPEE--YIPTIGVDFYTKTIEVDGKTVK------LQIWDTAGQERF-----RALR 65

Query: 67  DNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLI-HKIDLVHENQR 125
              +R     + V+D+ SR+        +  LE +L ++ ++    L+ +K DL  E+QR
Sbjct: 66  PLYYRGAQGFLLVYDITSRD---SFENVKKWLEEILRHADENVPIVLVGNKCDL--EDQR 120

Query: 126 DV 127
            V
Sbjct: 121 VV 122

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 22/97 (22%)

Query: 29  NILEVEHSHVRFLGNLVLNLWDCGGQEA---FMENYFTSQRDNIFRNVAVLIYVFDVESR 85
           NI  V+    +      LN+WD GGQ     +  NY        F N  VLIYV D   R
Sbjct: 50  NIKNVQADGFK------LNVWDIGGQRKIRPYWRNY--------FENTDVLIYVIDSADR 95

Query: 86  ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDLV 120
              +        L  +L     + V  L+  +K DL+
Sbjct: 96  ---KRFEEAGQELVELLEEEKLAGVPVLVFANKQDLL 129

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 44  LVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLH 103
           + LN+WD GGQE +   + T Q      + ++ + VFD+ + +    + Y+   ++A   
Sbjct: 51  IRLNVWDFGGQEIY---HATHQ--FFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKA--- 102

Query: 104 NSPDSKVFCLIHKIDLVHENQ 124
               S V  +   ID   +  
Sbjct: 103 FGGVSPVILVGTHIDESCDED 123

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	485
4arz_A	310	The Crystal Structure Of Gtr1p-Gtr2p Complexed With		1e-42
3r7w_A	307	Crystal Structure Of Gtr1p-Gtr2p Complex Length = 3		1e-39

>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With Gtp-Gdp Length = 310

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 126/223 (56%), Gaps = 48/223 (21%)
Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSH+RFLGN+ LNLWDCGGQ+ FMENYFT Q+D+IF+ V VLI+VFDVES E+ +D
Sbjct: 42  IDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKD 101
Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD------------------------ 126
           +  +   L+ +   SPD+K+F L+HK+DLV  ++R+                        
Sbjct: 102 IEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 161
Query: 127 -----------VAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQR 175
                       AWS IV  LIPN+   + +L  F  +M+  E++LFER TFLVI     
Sbjct: 162 FPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNG 221
Query: 176 KEHRDIH-------------RFEKISNIIKQFKLSCRLVYSLF 205
           +   + H             RFEKISNI+K FK SC  + S F
Sbjct: 222 ENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGF 264

>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex Length = 307

Iteration: 1
 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/223 (40%), Positives = 120/223 (53%), Gaps = 48/223 (21%)
Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
           ++VEHSH+RFLGN  LNLWDCGGQ+ F ENYFT Q+D+IF+ V VLI+VFDVES E+ +D
Sbjct: 39  IDVEHSHLRFLGNXTLNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFDVESTEVLKD 98
Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD------------------------ 126
           +  +   L+ +   SPD+K+F L+HK DLV  ++R+                        
Sbjct: 99  IEIFAKALKQLRKYSPDAKIFVLLHKXDLVQLDKREELFQIXXKNLSETSSEFGFPNLIG 158
Query: 127 -----------VAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQR 175
                       AWS IV  LIPN    + +L  F  + +  E++LFER TFLVI     
Sbjct: 159 FPTSIWDESLYKAWSQIVCSLIPNXSNHQSNLKKFKEIXNALEIILFERTTFLVICSSNG 218
Query: 176 KEHRDIH-------------RFEKISNIIKQFKLSCRLVYSLF 205
           +   + H             RFEKISNI K FK SC  + S F
Sbjct: 219 ENSNENHDSSDNNNVLLDPKRFEKISNIXKNFKQSCTKLKSGF 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	485
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-48
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-40
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	7e-04

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score =  167 bits (424), Expect = 4e-48
 Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 48/215 (22%)

Query: 33  VEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLH 92
           VEHSH+RFLGN+ LNLWDCGGQ+ FMENYFT Q+D+IF+ V VLI+VFDVES E+ +D+ 
Sbjct: 41  VEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE 100

Query: 93  YYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD-------------------------- 126
            +   L+ +   SPD+K+F L+HK+DLV  ++R+                          
Sbjct: 101 IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160

Query: 127 ---------VAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHCQRKE 177
                     AWS IV  LIPN+   + +L  F  +M+  E++LFER TFLVI     + 
Sbjct: 161 TSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGEN 220

Query: 178 HRDIH-------------RFEKISNIIKQFKLSCR 199
             + H             RFEKISNI+K FK SC 
Sbjct: 221 SNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCT 255

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score =  146 bits (370), Expect = 3e-40
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 44/202 (21%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
                 H   L +L   + +  GQ  + E  + S+R  +F++V  L+YV D +   ++  
Sbjct: 35  SNPSLEHFSTLIDL--AVMELPGQLNYFEPSYDSER--LFKSVGALVYVIDSQDEYIN-A 89

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLV-----HENQRDV------------------ 127
           +      +E     +P   +  LIHK+D +      + QRD+                  
Sbjct: 90  ITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149

Query: 128 --------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERATFLVISHC 173
                         A+S IV +LIP +  LE  L         ++  LF+  + + +S  
Sbjct: 150 SFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEKAFLFDVNSKIYVSTD 209

Query: 174 QRKEHRDIHRFEKISNIIKQFK 195
                 DI  +E  S  I    
Sbjct: 210 SN--PVDIQMYEVCSEFIDVTI 229

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 93.9 bits (233), Expect = 2e-22
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 31  LEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD 90
            ++    +     +   +WD  GQ  F +  F    + IFR    LIYV D +   ++  
Sbjct: 56  NKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF--DYEMIFRGTGALIYVIDAQDDYME-A 112

Query: 91  LHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQL 136
           L      +      +PD      IHK+D + ++ +      I  + 
Sbjct: 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 77/500 (15%), Positives = 151/500 (30%), Gaps = 108/500 (21%)

Query: 54  QEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCL 113
           Q + M   +  QRD ++ +  V    ++V   +    L       +A+L   P   V   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLR------QALLELRPAKNVL-- 154

Query: 114 IH------KIDLVHENQRD----------VAWSSIVYQLIPNVKELEQSLHLFATLMDGD 157
           I       K  +  +              + W ++     P    LE    L   +    
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNW 213

Query: 158 EVLLFERATFLVISHCQRKEHRDI---HRFEK---------ISNIIKQFKLSCRLVYSLF 205
                  +   +  H  + E R +     +E           +     F LSC+++ +  
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 206 NRDHFRLVYSLFNRDHFRLVYSL--FNRDHFRLVYSLF-----------NRDHFRLVYSL 252
            +     + S     H  L +       D  + +   +                    S+
Sbjct: 274 FKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 253 F--------NR-DHFRLVYSLFNRDHFRLVYSLF--------NRDHFRLVYSLFNRDH-- 293
                       D+++ V    N D    +             R  F  + S+F      
Sbjct: 333 IAESIRDGLATWDNWKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHI 387

Query: 294 -FRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRD 352
              L+  ++       V  + N+ H    YSL  +       S+ +  +  L   L N  
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIPSI-YLELKVKLENEY 443

Query: 353 --HFRLV--YSL---FNRDHFRLVYSLFNRDHFRLVYSLFNRDH------FRLVYSLFNR 399
             H  +V  Y++   F+ D     Y L    +  + + L N +H      FR+V+  F  
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR- 501

Query: 400 DHF---RLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRDHF-RLVYSLFNRDHF--RLV 453
             F   ++ +     +    + +   +  F   Y   N   + RLV ++     F  ++ 
Sbjct: 502 --FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIE 556

Query: 454 YSLFNRDHFRLV-YSLFNRD 472
            +L    +  L+  +L   D
Sbjct: 557 ENLICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 58/368 (15%), Positives = 120/368 (32%), Gaps = 70/368 (19%)

Query: 29  NILEVEHSHVRFLGNLVL-NLWDCGGQEAFMENY-----FTSQRDNIFRNVAVLIYVFDV 82
             L     +   L  LVL N+ +     AF  N       T+ R     +         +
Sbjct: 235 RRLLKSKPYENCL--LVLLNVQNAKAWNAF--NLSCKILLTT-RFKQVTDFLSAATTTHI 289

Query: 83  ESRELDRDLHYYQS--CLEAMLHNSPDS--KVFCLIH--KIDLVHENQRDVAWSSIVYQL 136
                   L   +    L   L   P    +     +  ++ ++ E+ RD   +   ++ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 137 IPNVKELEQSLHLFATLMDGDEVL-LFER-ATF----------LVISHCQRKEHRDIHRF 184
           + N  +L   +     +++  E   +F+R + F          L +      +       
Sbjct: 350 V-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------- 401

Query: 185 EKISNIIKQFKLSCRLVYSLFNRDHFRLVYSLFNRDHFRLVYSLFNRD--HFRLV--YSL 240
             +  ++ +        YSL  +       S+ +  +  L   L N    H  +V  Y++
Sbjct: 402 SDVMVVVNKLH-----KYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNI 455

Query: 241 ---FNRDHFRLVYSLFNRDHFRLVYSLFNRDH------FRLVYSLFNRDHF---RLVYSL 288
              F+ D     Y L    +  + + L N +H      FR+V+  F    F   ++ +  
Sbjct: 456 PKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDS 511

Query: 289 FNRDHFRLVYSLFNRDHFRLVYSLFNRDHF-RLVYSLFNRDHF--RLVYSLFNRDHFRLV 345
              +    + +   +  F   Y   N   + RLV ++     F  ++  +L    +  L+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLL 568

Query: 346 -YSLFNRD 352
             +L   D
Sbjct: 569 RIALMAED 576

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 22/123 (17%)

Query: 29  NILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELD 88
           + L ++   V+       +L+   GQ       + + R  I R V  +++V D     L 
Sbjct: 60  DFLPLDIGEVKGF-KTRFHLYTVPGQVF-----YNASRKLILRGVDGIVFVADSAPNRLR 113

Query: 89  RDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV--AWSSIVYQLIPNVKELEQS 146
            +    ++  E +           +     ++  N+RD+  A           V+ +   
Sbjct: 114 ANAESMRNMRENLAEYGLTLDDVPI-----VIQVNKRDLPDALP---------VEMVRAV 159

Query: 147 LHL 149
           +  
Sbjct: 160 VDP 162

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 17/45 (37%)

Query: 122 ENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLFERAT 166
           E Q               +K+L+ SL L+A   D    L   +AT
Sbjct: 18  EKQ--------------ALKKLQASLKLYAD--DSAPALAI-KAT 45

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 22/96 (22%)

Query: 29  NILEVEHSHVRFLGNLVLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESR 85
           N+ ++   +V         LWD GGQ  F    E Y         R V+ ++Y+ D  + 
Sbjct: 58  NMRKITKGNVTI------KLWDIGGQPRFRSMWERY--------CRGVSAIVYMVD--AA 101

Query: 86  ELDRDLHYYQSCLEAMLHNSPDSKVFCLI--HKIDL 119
           + ++ +   ++ L  +L       +  L+  +K DL
Sbjct: 102 DQEK-IEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	485
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-04
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-04
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	0.001
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	0.002
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	0.003
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	0.003

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 10  AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
             +  F  + F    I+   I     +       + L +WD  GQE      F +     
Sbjct: 17  CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER-----FRTITTAY 71

Query: 70  FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQ 124
           +R    +I V+D+       ++  +   +    +   ++++  + +K D+     
Sbjct: 72  YRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVV 124

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 10  AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
             +  F+ +T+    IS   +     +       + L +WD  GQE      F +   + 
Sbjct: 21  CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER-----FRTITSSY 75

Query: 70  FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
           +R    +I V+DV  +E    +  +      +   +  + +  L+     + + +     
Sbjct: 76  YRGSHGIIIVYDVTDQESFNGVKMWLQE---IDRYATSTVLKLLVGNKCDLKDKRVVEYD 132

Query: 130 SSIVYQLIPNVKELE 144
            +  +     +  LE
Sbjct: 133 VAKEFADANKMPFLE 147

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 10  AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
           +F+  +  ++F    +S   I     +  R    + L +WD  GQE      + +     
Sbjct: 20  SFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER-----YRTITTAY 74

Query: 70  FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
           +R     I ++D+ + E    +  + +      ++  +++V  + +K D+  E       
Sbjct: 75  YRGAMGFILMYDITNEESFNAVQDWSTQ--IKTYSWDNAQVLLVGNKCDMEDERVVSSER 132

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 10  AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
             + +F    F         +             + L +WD  GQE F      S   + 
Sbjct: 20  CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-----SVTRSY 74

Query: 70  FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
           +R  A  + V+D+ SRE    L  + +        +  + V  L      +  ++     
Sbjct: 75  YRGAAGALLVYDITSRETYNALTNWLTD---ARMLASQNIVIILCGNKKDLDADREVTFL 131

Query: 130 SSIVYQLIPNVKELEQS 146
            +  +     +  LE S
Sbjct: 132 EASRFAQENELMFLETS 148

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 16/120 (13%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 10  AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
             +  F+ + F    IS   I     +       + L +WD  GQE      F +     
Sbjct: 21  CVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRTITTAY 75

Query: 70  FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
           +R    ++ V+D+ + +   ++  +   +E       +  +      ++   +  ++   
Sbjct: 76  YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 135

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 10  AFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNI 69
           + +  FT +TF   + +   +     +         L +WD  GQE      F +   + 
Sbjct: 22  SLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER-----FRTLTPSY 76

Query: 70  FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAW 129
           +R    +I V+DV      RD           L           +   + + +  R+V  
Sbjct: 77  YRGAQGVILVYDVT----RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	485
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.87
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.87
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.86
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.85
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.84
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.83
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.82
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.82
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.8
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.8
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.79
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.76
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.73
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.7
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.7
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.7
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.69
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.53
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.52
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.45
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.43
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.34
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.32
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.29
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.23
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.2
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.13
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.13
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.09
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.05
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.96
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.77
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.73
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.6
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.58
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.46
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.42
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.35
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.18
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.09
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.05
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.96
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.9
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.86
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.71
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.39
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.2
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.12
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.79
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.75
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.59
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.31
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.44
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.62
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	84.0
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	81.69

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-24  Score=191.81  Aligned_cols=139  Identities=15%  Similarity=0.084  Sum_probs=101.1

Q ss_pred             cceehhcccccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCC
Q psy13568          4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVE   83 (485)
Q Consensus         4 rSiIfsn~i~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVt   83 (485)
                      +|+++..+.+.....+.||..+.+.+++.++++.      +.|+||||+|||++     ..+++.+++++|++|+|||++
T Consensus        14 KTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~l~i~D~~g~e~~-----~~~~~~~~~~~d~~ilv~d~t   82 (168)
T d2gjsa1          14 KSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE------ASLMVYDIWEQDGG-----RWLPGHCMAMGDAYVIVYSVT   82 (168)
T ss_dssp             HHHHHHHHHTC---------CEEEEEEEEETTEE------EEEEEEECC------------CHHHHHTSCSEEEEEEETT
T ss_pred             HHHHHHHHhCCccCCcCCeeeeeecceeeccccc------cceeeeeccccccc-----ceecccchhhhhhhceecccc
Confidence            4556666666666667777788888899999887      46999999999999     899999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         84 SRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        84 d~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      +++||+++..|.+.+... ...+++|++|||||+||.+  ++++      ++++..     +++|+|+||++|.||++++
T Consensus        83 ~~~s~~~~~~~~~~i~~~-~~~~~~piilvgnK~Dl~~--~~~v~~~~~~~~~~~~-----~~~~~e~Sak~~~~v~~~f  154 (168)
T d2gjsa1          83 DKGSFEKASELRVQLRRA-RQTDDVPIILVGNKSDLVR--SREVSVDEGRACAVVF-----DCKFIETSAALHHNVQALF  154 (168)
T ss_dssp             CHHHHHHHHHHHHHHHHH-CC--CCCEEEEEECTTCGG--GCCSCHHHHHHHHHHH-----TSEEEECBTTTTBSHHHHH
T ss_pred             ccccccccccccchhhcc-cccccceEEEeecccchhh--hcchhHHHHHHHHHhc-----CCEEEEEeCCCCcCHHHHH
Confidence            999999999998877653 3357899999999999953  3333      677777     8899999999999999975


Q ss_pred             hHHH
Q psy13568        158 EVLL  161 (485)
Q Consensus       158 Ev~L  161 (485)
                      +.++
T Consensus       155 ~~l~  158 (168)
T d2gjsa1         155 EGVV  158 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.2e-24  Score=191.03  Aligned_cols=144  Identities=19%  Similarity=0.237  Sum_probs=113.3

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      ||+++..+. +.|++.+.||+.+.+..++.++++.      ++|+|||++|++.|     ..+++.+++++|++|+|||+
T Consensus        15 KTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~------~~l~i~D~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   83 (177)
T d1kmqa_          15 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQ------VELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSI   83 (177)
T ss_dssp             HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----TTTGGGGCTTCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCCcCCceeeeccccccccccc------eeeeccccCccchh-----cccchhhcccchhhhhhccc
Confidence            345555555 5688999999988888888888887      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCch----------hh------hHHHHhhcccCCccceecc
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQR----------DV------AWSSIVYQLIPNVKELEQS  146 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~R----------qV------a~Akivq~LIpni~y~EtS  146 (485)
                      ++++||+++..|.  ++.+.+..+++|++|||||+|+.++...          .+      +|++.+    ..++|+|+|
T Consensus        84 ~~~~Sf~~~~~~~--~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~----~~~~~~E~S  157 (177)
T d1kmqa_          84 DSPDSLENIPEKW--TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECS  157 (177)
T ss_dssp             TCHHHHHHHHHTH--HHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT----TCSEEEECC
T ss_pred             chhHHHHHHHHHH--HHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc----CCcEEEEec
Confidence            9999999987653  2334456789999999999999643211          11      444444    357999999


Q ss_pred             hhhccCccchhhHHHHHhhhhee
Q psy13568        147 LHLFATLMDGDEVLLFERATFLV  169 (485)
Q Consensus       147 Akt~~nV~ea~Ev~LFE~aT~Lv  169 (485)
                      |++|.||+++     ||.+++.+
T Consensus       158 Akt~~gi~e~-----F~~i~~~~  175 (177)
T d1kmqa_         158 AKTKDGVREV-----FEMATRAA  175 (177)
T ss_dssp             TTTCTTHHHH-----HHHHHHHH
T ss_pred             CCCCcCHHHH-----HHHHHHHH
Confidence            9999999995     55555443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-24  Score=191.89  Aligned_cols=140  Identities=17%  Similarity=0.182  Sum_probs=116.1

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||+.+.+...+.++++.      +.+++||++|++.|     ...+..+++++|++|+|||+
T Consensus        15 KTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~------~~l~~~d~~g~~~~-----~~~~~~~~~~a~~~ilv~d~   83 (171)
T d2erxa1          15 KSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI------CTLQITDTTGSHQF-----PAMQRLSISKGHAFILVYSI   83 (171)
T ss_dssp             HHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEE------EEEEEEECCSCSSC-----HHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCccCcceeeccccceeecccc------ceeccccccccccc-----cccccccccceeEEEEEeec
Confidence            355666555 5688899999988888888888887      46999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccch
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMDG  156 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~ea  156 (485)
                      ++++||+++..|...+.+.+...+++|++|||||+||.+  ++++      +|++..     +++|+|+||++|.||+++
T Consensus        84 ~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~--~~~v~~~e~~~~~~~~-----~~~~~e~Sak~~~~v~e~  156 (171)
T d2erxa1          84 TSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP--SREVQSSEAEALARTW-----KCAFMETSAKLNHNVKEL  156 (171)
T ss_dssp             TCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG--GCCSCHHHHHHHHHHH-----TCEEEECBTTTTBSHHHH
T ss_pred             ccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc--cccccHHHHHHHHHHc-----CCeEEEEcCCCCcCHHHH
Confidence            999999999999888887776678999999999999943  3333      677777     789999999999999996


Q ss_pred             hhHHH
Q psy13568        157 DEVLL  161 (485)
Q Consensus       157 ~Ev~L  161 (485)
                      ++.++
T Consensus       157 f~~l~  161 (171)
T d2erxa1         157 FQELL  161 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-23  Score=186.61  Aligned_cols=141  Identities=19%  Similarity=0.169  Sum_probs=117.9

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||+.+.+.+++.++++.+      +|+||||+|++.+     ..++..+++++|++|+|||+
T Consensus        17 KTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~l~i~d~~g~~~~-----~~~~~~~~~~~d~~ilv~d~   85 (167)
T d1xtqa1          17 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY------HLQLVDTAGQDEY-----SIFPQTYSIDINGYILVYSV   85 (167)
T ss_dssp             HHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE------EEEEEECCCCCTT-----CCCCGGGTSSCCEEEEEEET
T ss_pred             HHHHHHHHHhCCCCcccCcceecccceEEecCcEEE------Eeeeccccccccc-----ccccchhhhhhhhhhhhccc
Confidence            345555554 67889999999777888899999884      6999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccch
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMDG  156 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~ea  156 (485)
                      ++++||+++..|.+.+.+. ...+++|++|||||+||..  ++++      +|++..     +++|+|+||++|.||+++
T Consensus        86 ~~~~s~~~~~~~~~~i~~~-~~~~~~piilvgnK~Dl~~--~r~v~~~~~~~~a~~~-----~~~~~e~Sak~~~~v~~~  157 (167)
T d1xtqa1          86 TSIKSFEVIKVIHGKLLDM-VGKVQIPIMLVGNKKDLHM--ERVISYEEGKALAESW-----NAAFLESSAKENQTAVDV  157 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHH-HCSSCCCEEEEEECTTCGG--GCCSCHHHHHHHHHHH-----TCEEEECCTTCHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhc-ccccccceeeecccccccc--ccchhHHHHHHHHHHc-----CCEEEEEecCCCCCHHHH
Confidence            9999999999998776653 2357899999999999953  3333      677777     789999999999999998


Q ss_pred             hhHHHHH
Q psy13568        157 DEVLLFE  163 (485)
Q Consensus       157 ~Ev~LFE  163 (485)
                      ++.++-|
T Consensus       158 f~~li~~  164 (167)
T d1xtqa1         158 FRRIILE  164 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766644

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-23  Score=188.94  Aligned_cols=139  Identities=18%  Similarity=0.262  Sum_probs=110.7

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..+. +.|.+++.||+ .+.+.+++.++++.      ++++||||+|++.+     ..+++.++++++++|+|||
T Consensus        16 KTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~------~~l~i~D~~g~~~~-----~~~~~~~~~~~~~~ilv~d   84 (170)
T d1i2ma_          16 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP------IKFNVWDTAGQEKF-----GGLRDGYYIQAQCAIIMFD   84 (170)
T ss_dssp             HHHHHHTTC-----CCEEEETTEEEEEEEECBTTCC------EEEEEEECTTHHHH-----SSCGGGGTTTCCEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcccccceecccccccccccccc------cccccccccccccc-----ceecchhcccccchhhccc
Confidence            455566665 45788999998 77777888777776      56999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh--hHHHHhhcccCCccceecchhhccCccchhhH
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV--AWSSIVYQLIPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV--a~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      +++++||+++..|.+.+..   ..+++|++|||||+||..+...+.  ++++..     +++|+|+||++|.||+++++.
T Consensus        85 ~~~~~Sf~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~e~Sak~~~~v~e~f~~  156 (170)
T d1i2ma_          85 VTSRVTYKNVPNWHRDLVR---VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-----NLQYYDISAKSNYNFEKPFLW  156 (170)
T ss_dssp             TTSGGGGTTHHHHHHHHHH---HHCSCCEEEEEECCCCSCSCCTTTSHHHHSSC-----SSEEEEEBTTTTBTTTHHHHH
T ss_pred             cccccccchhHHHHHHHhh---ccCCCceeeecchhhhhhhhhhhHHHHHHHHc-----CCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999998766554   357899999999999965433322  555544     889999999999999997555


Q ss_pred             HH
Q psy13568        160 LL  161 (485)
Q Consensus       160 ~L  161 (485)
                      ++
T Consensus       157 l~  158 (170)
T d1i2ma_         157 LA  158 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-23  Score=189.90  Aligned_cols=139  Identities=15%  Similarity=0.172  Sum_probs=109.3

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      ||+++..++ +.|.+++.||+.+.+.+.+.+++..      ++|+||||+||+.|     ..++..+++++|++|+|||+
T Consensus        22 KTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~------~~l~i~D~~g~e~~-----~~~~~~~~~~a~~~ilv~d~   90 (185)
T d2atxa1          22 KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ------YLLGLYDTAGQEDY-----DRLRPLSYPMTDVFLICFSV   90 (185)
T ss_dssp             HHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCE------EEEEEECCCCSSSS-----TTTGGGGCTTCSEEEEEEET
T ss_pred             HHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCce------EEeecccccccchh-----hhhhhhcccccceeeecccc
Confidence            345555554 5688999999988888888887777      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCC----------chhh------hHHHHhhcccCCccceecc
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHEN----------QRDV------AWSSIVYQLIPNVKELEQS  146 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~----------~RqV------a~Akivq~LIpni~y~EtS  146 (485)
                      ++++||+++..|..  ..++...+++|++|||||+||.++.          +|++      +|++..    ..++|+|+|
T Consensus        91 t~~~Sf~~~~~~~~--~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~----~~~~~~E~S  164 (185)
T d2atxa1          91 VNPASFQNVKEEWV--PELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI----GACCYVECS  164 (185)
T ss_dssp             TCHHHHHHHHHTHH--HHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH----TCSCEEECC
T ss_pred             chHHHHHHHHHHHH--HHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHc----CCCEEEEec
Confidence            99999998864422  3333457899999999999996422          2222      455555    258999999


Q ss_pred             hhhccCccchhhH
Q psy13568        147 LHLFATLMDGDEV  159 (485)
Q Consensus       147 Akt~~nV~ea~Ev  159 (485)
                      |+++.||+++|+.
T Consensus       165 Ak~~~gv~e~F~~  177 (185)
T d2atxa1         165 ALTQKGLKTVFDE  177 (185)
T ss_dssp             TTTCTTHHHHHHH
T ss_pred             CCCCcCHHHHHHH
Confidence            9999999996443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.4e-23  Score=187.83  Aligned_cols=150  Identities=17%  Similarity=0.232  Sum_probs=114.0

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||+.+.+.+.+.++++.      ++|+||||+|+++|     ..+++.+++++|++|+|||+
T Consensus        16 KTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~------~~l~i~D~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   84 (191)
T d2ngra_          16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP------YTLGLFDTAGQEDY-----DRLRPLSYPQTDVFLVCFSV   84 (191)
T ss_dssp             HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----TTTGGGGCTTCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCCcCCceeeecceeEeeCCce------eeeeccccccchhh-----hhhhhhcccccceeeccccc
Confidence            345555555 5678999999988888888888887      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCc----------hhh--hHHHHhhcccCCccceecchhhc
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQ----------RDV--AWSSIVYQLIPNVKELEQSLHLF  150 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~----------RqV--a~Akivq~LIpni~y~EtSAkt~  150 (485)
                      ++++||+++..|..  ..+....+++|+++||||+||.++..          +.+  +.++.+.+.+.+++|+|+||+++
T Consensus        85 ~~~~Sf~~~~~~~~--~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  162 (191)
T d2ngra_          85 VSPSSFENVKEKWV--PEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ  162 (191)
T ss_dssp             TCHHHHHHHHHTHH--HHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTC
T ss_pred             chHHHHHHHHHHHH--HHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            99999999975432  22334578999999999999953321          111  22222222234789999999999


Q ss_pred             cCccchhhHHHHHhhhheeee
Q psy13568        151 ATLMDGDEVLLFERATFLVIS  171 (485)
Q Consensus       151 ~nV~ea~Ev~LFE~aT~LvIa  171 (485)
                      .||+++     |+.++..++.
T Consensus       163 ~~V~e~-----f~~l~~~~~~  178 (191)
T d2ngra_         163 KGLKNV-----FDEAILAALE  178 (191)
T ss_dssp             TTHHHH-----HHHHHHHHTS
T ss_pred             cCHHHH-----HHHHHHHHhc
Confidence            999995     5555555444

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.87  E-value=4.7e-23  Score=185.35  Aligned_cols=139  Identities=21%  Similarity=0.222  Sum_probs=113.6

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.++|.||+.+.+..++.++++.+      .|++||++|++++     ..+++.++++++++|+|||+
T Consensus        17 KTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~------~l~i~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   85 (168)
T d1u8za_          17 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV------QIDILDTAGQEDY-----AAIRDNYFRSGEGFLCVFSI   85 (168)
T ss_dssp             HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE------EEEEEECCC---C-----HHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCcccCCccccccccccccccccc------cccccccccccch-----hhhhhhcccccceeEEEeec
Confidence            345555543 67889999999888888888998884      6999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccch
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMDG  156 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~ea  156 (485)
                      ++++||+.+..|.+.+.+.. ..+++|++|||||+||.+  ++++      ++++..     +++++|+||++|.||+++
T Consensus        86 ~~~~s~~~~~~~~~~i~~~~-~~~~~piiivgnK~Dl~~--~~~v~~~~~~~~~~~~-----~~~~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          86 TEMESFAATADFREQILRVK-EDENVPFLLVGNKSDLED--KRQVSVEEAKNRADQW-----NVNYVETSAKTRANVDKV  157 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH-CCTTSCEEEEEECGGGGG--GCCSCHHHHHHHHHHH-----TCEEEECCTTTCTTHHHH
T ss_pred             cchhhhhhHHHHHHHHHHhh-CCCCCcEEEEeccccccc--cccccHHHHHHHHHHc-----CCeEEEEcCCCCcCHHHH
Confidence            99999999999988776543 367899999999999943  3333      667776     789999999999999998


Q ss_pred             hhHHH
Q psy13568        157 DEVLL  161 (485)
Q Consensus       157 ~Ev~L  161 (485)
                      ++.++
T Consensus       158 f~~l~  162 (168)
T d1u8za_         158 FFDLM  162 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-23  Score=184.06  Aligned_cols=142  Identities=19%  Similarity=0.175  Sum_probs=113.8

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||+.+.+..++.+++..      +.+++||++|++.+     ..+++.++++++++|+|||+
T Consensus        16 KTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~------~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   84 (167)
T d1c1ya_          16 KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ------CMLEILDTAGTEQF-----TAMRDLYMKNGQGFALVYSI   84 (167)
T ss_dssp             HHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCE------EEEEEEEECSSCSS-----TTHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHcCCCCCccCCccccccceeEEeeeeE------EEeccccccCcccc-----cccccccccccceeEEeeec
Confidence            345555554 5688899999987787888888777      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      ++++||+++..|.+.+.+. ...+++|++|||||+||..+.....    .+++..    .+++|+|+||++|.||+++|+
T Consensus        85 ~~~~sf~~~~~~~~~~~~~-~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          85 TAQSTFNDLQDLREQILRV-KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----CNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             TCHHHHHTHHHHHHHHHHH-HCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----TSCEEEECBTTTTBSHHHHHH
T ss_pred             cchhhhHhHHHHHHHHHHh-cCCCCCeEEEEEEecCcccccccchhHHHHHHHHh----CCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999998776653 2467899999999999954322111    333333    478999999999999999766


Q ss_pred             HHH
Q psy13568        159 VLL  161 (485)
Q Consensus       159 v~L  161 (485)
                      .++
T Consensus       160 ~l~  162 (167)
T d1c1ya_         160 DLV  162 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.9e-23  Score=187.07  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=114.6

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|++++.||+.+.+.+++.++++.      +.++|||++|++.+     ..+++.+++++|++|+|||+
T Consensus        15 KTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~------~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   83 (179)
T d1m7ba_          15 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQR------IELSLWDTSGSPYY-----DNVRPLSYPDSDAVLICFDI   83 (179)
T ss_dssp             HHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCE------EEEEEEEECCSGGG-----TTTGGGGCTTCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCccCCceeecccccccccceE------Eeeccccccccccc-----cccccchhhhhhhhheeeec
Confidence            345555554 5688999999988888888888877      46999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCC----------chhh------hHHHHhhcccCCccceecc
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHEN----------QRDV------AWSSIVYQLIPNVKELEQS  146 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~----------~RqV------a~Akivq~LIpni~y~EtS  146 (485)
                      ++++||+++..|..  ..+....+++|++|||||+|+..+.          ++++      .+++..    ...+|+|+|
T Consensus        84 ~~~~Sf~~~~~~~~--~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~----~~~~y~E~S  157 (179)
T d1m7ba_          84 SRPETLDSVLKKWK--GEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI----GAATYIECS  157 (179)
T ss_dssp             TCHHHHHHHHHTHH--HHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH----TCSEEEECB
T ss_pred             ccCCCHHHHHHHHH--HHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh----CCCeEEEEe
Confidence            99999999986533  3334567899999999999985321          1222      455554    257899999


Q ss_pred             hhhccC-ccchhhHHHHHhhhheeee
Q psy13568        147 LHLFAT-LMDGDEVLLFERATFLVIS  171 (485)
Q Consensus       147 Akt~~n-V~ea~Ev~LFE~aT~LvIa  171 (485)
                      |+++.| +++     +|+.+++.+|.
T Consensus       158 Ak~~~n~i~~-----~F~~~~~~~l~  178 (179)
T d1m7ba_         158 ALQSENSVRD-----IFHVATLACVN  178 (179)
T ss_dssp             TTTBHHHHHH-----HHHHHHHHHHT
T ss_pred             CCCCCcCHHH-----HHHHHHHHHhc
Confidence            999986 887     57777776654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=8e-23  Score=184.01  Aligned_cols=141  Identities=16%  Similarity=0.223  Sum_probs=115.4

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||+.+.+.+++.+++..      +.++|||++|++.+     ..+++.++++++++|+|||+
T Consensus        17 KTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~llv~d~   85 (169)
T d1x1ra1          17 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQW------AILDVLDTAGQEEF-----SAMREQYMRTGDGFLIVYSV   85 (169)
T ss_dssp             HHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEE------EEEEEEECCSCGGG-----CSSHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCcccCcceeecccccccccccc------cccccccccccccc-----ccchhhhhhhccEEEEeccc
Confidence            345555555 4688899999988888888888887      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCch--hh--hHHHHhhcccCCccceecchhhcc-Cccchh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQR--DV--AWSSIVYQLIPNVKELEQSLHLFA-TLMDGD  157 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~R--qV--a~Akivq~LIpni~y~EtSAkt~~-nV~ea~  157 (485)
                      +|++||++++.|.+.+.+.. ...++|++|+|||+||.++.+.  +.  +|++..     +++|+|+||+++. ||+++|
T Consensus        86 ~d~~Sf~~~~~~~~~i~~~~-~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~-----~~~~~e~Sak~~~~nV~~~F  159 (169)
T d1x1ra1          86 TDKASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-----NIPYIETSAKDPPLNVDKTF  159 (169)
T ss_dssp             TCHHHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-----TCCEEEEBCSSSCBSHHHHH
T ss_pred             ccchhhhccchhhHHHHhhc-cccCccEEEEecccchhhhceeehhhHHHHHHHc-----CCEEEEEcCCCCCcCHHHHH
Confidence            99999999999987766532 3468999999999999653221  11  788877     7899999999885 999965


Q ss_pred             hHHH
Q psy13568        158 EVLL  161 (485)
Q Consensus       158 Ev~L  161 (485)
                      +.++
T Consensus       160 ~~l~  163 (169)
T d1x1ra1         160 HDLV  163 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.1e-23  Score=184.37  Aligned_cols=141  Identities=22%  Similarity=0.236  Sum_probs=115.9

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||..+.+.+++.++++.+      .|++|||+|++++     ..+++.++++++++|+|||+
T Consensus        19 KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~l~~~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~   87 (173)
T d2fn4a1          19 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPA------RLDILDTAGQEEF-----GAMREQYMRAGHGFLLVFAI   87 (173)
T ss_dssp             HHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEE------EEEEEECCCTTTT-----SCCHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCcccccccccceeeEeccCCeee------eeecccccccccc-----ccccchhhccceeeeeeccc
Confidence            345555555 57889999999888889999999884      6999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchh----hhHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD----VAWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~Rq----Va~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      ++++||+.+..|.+.+.+. ...+++|++|||||+||..+.+..    ..+++..     +++|+|+||++|.||+++++
T Consensus        88 ~~~~s~~~~~~~~~~i~~~-~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          88 NDRQSFNEVGKLFTQILRV-KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH-----HVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             TCHHHHHHHHHHHHHHHHH-HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-----TCEEEECBTTTTBSHHHHHH
T ss_pred             ccccccchhhhhhHHHHHH-hccCCCceEEEEEeechhhccccchhhhhHHHHhc-----CCEEEEEeCCCCcCHHHHHH
Confidence            9999999999998776653 245789999999999995322111    1677776     78999999999999999655


Q ss_pred             HHH
Q psy13568        159 VLL  161 (485)
Q Consensus       159 v~L  161 (485)
                      .++
T Consensus       162 ~l~  164 (173)
T d2fn4a1         162 QLV  164 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-22  Score=182.19  Aligned_cols=136  Identities=18%  Similarity=0.258  Sum_probs=105.7

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..++ +.|.+++.||+ .+...+++..+++.      +.+++||++|++++     ..+++.+++++|++|+|||
T Consensus        16 KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d   84 (167)
T d1z08a1          16 KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKR------VNLAIWDTAGQERF-----HALGPIYYRDSNGAILVYD   84 (167)
T ss_dssp             HHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCE------EEEEEEECCCC------------CCSSTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcccccccccchheeeeccCCcc------ceeeeeccCCccee-----cccchhhccCCceeEEEEe
Confidence            455666665 57899999998 66667788877777      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMD  155 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~e  155 (485)
                      +++++||+++..|.+.+...  ..++.|++|||||+||..  ++++      ++++..     +++|+|+||++|.||++
T Consensus        85 ~~~~~Sf~~~~~~~~~~~~~--~~~~~~~ilvgnK~Dl~~--~~~v~~~e~~~~a~~~-----~~~~~e~Sak~~~~v~e  155 (167)
T d1z08a1          85 ITDEDSFQKVKNWVKELRKM--LGNEICLCIVGNKIDLEK--ERHVSIQEAESYAESV-----GAKHYHTSAKQNKGIEE  155 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH--HGGGSEEEEEEECGGGGG--GCCSCHHHHHHHHHHT-----TCEEEEEBTTTTBSHHH
T ss_pred             CCchhHHHhhhhhhhhcccc--cccccceeeecccccccc--ccccchHHHHHHHHHc-----CCeEEEEecCCCcCHHH
Confidence            99999999999987765543  357789999999999953  3333      677776     78999999999999999


Q ss_pred             hhhH
Q psy13568        156 GDEV  159 (485)
Q Consensus       156 a~Ev  159 (485)
                      +++.
T Consensus       156 ~F~~  159 (167)
T d1z08a1         156 LFLD  159 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.1e-22  Score=181.44  Aligned_cols=137  Identities=18%  Similarity=0.241  Sum_probs=113.2

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..+. +.|++++.||+ .+.+..+...++..      +.+++|||+|++++     ..+++.++++++++|+|||
T Consensus        15 KSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~------~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d   83 (164)
T d1z2aa1          15 KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED------VRLMLWDTAGQEEF-----DAITKAYYRGAQACVLVFS   83 (164)
T ss_dssp             HHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE------EEEEEECCTTGGGT-----TCCCHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcccccccccccceeeeeecCce------eeeeeeccCCccch-----hhhhhhhhccCceEEEEEe
Confidence            355565565 67889999998 67777788888877      46999999999999     8899999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMD  155 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~e  155 (485)
                      +++++||+++..|.+.+.   +..+++|++|||||+||.+  ++++      +|++..     +++++|+||++|.||++
T Consensus        84 ~~~~~s~~~~~~~~~~i~---~~~~~~~iilVgnK~Dl~~--~~~v~~~~~~~~~~~~-----~~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          84 TTDRESFEAISSWREKVV---AEVGDIPTALVQNKIDLLD--DSCIKNEEAEGLAKRL-----KLRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             TTCHHHHHTHHHHHHHHH---HHHCSCCEEEEEECGGGGG--GCSSCHHHHHHHHHHH-----TCEEEECBTTTTBSSHH
T ss_pred             ccchhhhhhccccccccc---ccCCCceEEEeeccCCccc--ceeeeehhhHHHHHHc-----CCEEEEeccCCCcCHHH
Confidence            999999999998876654   3457899999999999953  3333      677776     78999999999999999


Q ss_pred             hhhHHH
Q psy13568        156 GDEVLL  161 (485)
Q Consensus       156 a~Ev~L  161 (485)
                      +++.++
T Consensus       154 ~f~~l~  159 (164)
T d1z2aa1         154 VFKYLA  159 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            755443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=181.90  Aligned_cols=138  Identities=15%  Similarity=0.166  Sum_probs=110.3

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..|+ +.|.++|.||+.+.+...+..+++.      ++|+||||+|++.+     . .+..++++++++|+|||+
T Consensus        15 KTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~------~~l~i~D~~g~~~~-----~-~~~~~~~~~~~~ilv~d~   82 (168)
T d2atva1          15 KSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV------VSMEILDTAGQEDT-----I-QREGHMRWGEGFVLVYDI   82 (168)
T ss_dssp             HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE------EEEEEEECCCCCCC-----H-HHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCccCCceeccccccccccccc------eEEEEeeccccccc-----c-cchhhhcccccceeeccc
Confidence            345555555 5688999999966677777778877      46999999999988     3 456789999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhcc-Cccc
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFA-TLMD  155 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~-nV~e  155 (485)
                      ++++||+.+..|..++.. ....+++|++|||||+||.  .++++      ++++..     +++|+|+||++|. ||++
T Consensus        83 ~~~~s~~~~~~~~~~~~~-~~~~~~~piilvgnK~Dl~--~~r~V~~~e~~~~a~~~-----~~~~~e~Saktg~gnV~e  154 (168)
T d2atva1          83 TDRGSFEEVLPLKNILDE-IKKPKNVTLILVGNKADLD--HSRQVSTEEGEKLATEL-----ACAFYECSACTGEGNITE  154 (168)
T ss_dssp             TCHHHHHTHHHHHHHHHH-HHTTSCCCEEEEEECGGGG--GGCCSCHHHHHHHHHHH-----TSEEEECCTTTCTTCHHH
T ss_pred             CCccchhhhhhhcccccc-cccccCcceeeeccchhhh--hhccCcHHHHHHHHHHh-----CCeEEEEccccCCcCHHH
Confidence            999999999988766554 3446789999999999994  33333      677777     7899999999998 6999


Q ss_pred             hhhHHH
Q psy13568        156 GDEVLL  161 (485)
Q Consensus       156 a~Ev~L  161 (485)
                      +|+.++
T Consensus       155 ~F~~l~  160 (168)
T d2atva1         155 IFYELC  160 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=181.00  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=115.8

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||+.+.+..++.+++..+      ++++||++|++.+     ..++..++++++++|+|||+
T Consensus        16 KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~l~~~d~~g~~~~-----~~~~~~~~~~a~~~ilv~d~   84 (167)
T d1kaoa_          16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPS------VLEILDTAGTEQF-----ASMRDLYIKNGQGFILVYSL   84 (167)
T ss_dssp             HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE------EEEEEECCCTTCC-----HHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceE------eeccccCCCcccc-----ccchHHHhhcccceeeeeee
Confidence            345555555 46788999999888888899988884      6999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      ++++||+++..|...+... ...+++|++|||||+||.+..+...    .+++..     +++++|+||++|.|++++++
T Consensus        85 ~~~~s~~~~~~~~~~~~~~-~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~e~Sak~g~~i~e~f~  158 (167)
T d1kaoa_          85 VNQQSFQDIKPMRDQIIRV-KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW-----GCPFMETSAKSKTMVDELFA  158 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHH-TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-----TSCEEEECTTCHHHHHHHHH
T ss_pred             cchhhhhhhhchhhhhhhh-ccCCCCCEEEEEEccchhhcccchHHHHHHHHHHc-----CCeEEEECCCCCcCHHHHHH
Confidence            9999999999998776653 3457899999999999954322211    666666     78999999999999999766


Q ss_pred             HHH
Q psy13568        159 VLL  161 (485)
Q Consensus       159 v~L  161 (485)
                      .++
T Consensus       159 ~i~  161 (167)
T d1kaoa_         159 EIV  161 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-22  Score=183.07  Aligned_cols=146  Identities=20%  Similarity=0.259  Sum_probs=114.5

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      ||+++..|+ +.|.+++.||+.+.+..++.++++.      +++++||++|++.|     ..+++.++++++++|+|||+
T Consensus        18 KTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~------~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   86 (183)
T d1mh1a_          18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP------VNLGLWDTAGQEDY-----DRLRPLSYPQTDVSLICFSL   86 (183)
T ss_dssp             HHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEE------EEEEEECCCCSGGG-----TTTGGGGCTTCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCcccccceeeceeeeeeccCcc------eEEEeecccccccc-----hhhhhhcccccceeeeeecc
Confidence            456666666 4579999999988888888888887      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchh----------h------hHHHHhhcccCCccceecc
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD----------V------AWSSIVYQLIPNVKELEQS  146 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~Rq----------V------a~Akivq~LIpni~y~EtS  146 (485)
                      ++++||+++..|..  ..++...+++|++|||||+||.++....          .      .+++..    ..++|+|+|
T Consensus        87 ~~~~sf~~i~~~~~--~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~E~S  160 (183)
T d1mh1a_          87 VSPASFENVRAKWY--PEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI----GAVKYLECS  160 (183)
T ss_dssp             TCHHHHHHHHHTHH--HHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT----TCSEEEECC
T ss_pred             chHHHHHHHHHHHH--HHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHc----CCceEEEcC
Confidence            99999999985422  3334457899999999999985332110          0      444444    258999999


Q ss_pred             hhhccCccchhhHHHHHhhhheeee
Q psy13568        147 LHLFATLMDGDEVLLFERATFLVIS  171 (485)
Q Consensus       147 Akt~~nV~ea~Ev~LFE~aT~LvIa  171 (485)
                      |++|.||+++     |+...+.++.
T Consensus       161 Ak~~~~V~e~-----F~~l~~~il~  180 (183)
T d1mh1a_         161 ALTQRGLKTV-----FDEAIRAVLC  180 (183)
T ss_dssp             TTTCTTHHHH-----HHHHHHHHSC
T ss_pred             CCCCcCHHHH-----HHHHHHHHcC
Confidence            9999999995     5555555554

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.4e-22  Score=176.83  Aligned_cols=139  Identities=19%  Similarity=0.243  Sum_probs=112.2

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..++ ++|++++.|++ .+....+...++..      ++++|||++||+++     ..+++.++++++++|+|||
T Consensus        13 KTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d   81 (164)
T d1yzqa1          13 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT------IRLQLWDTAGQERF-----RSLIPSYIRDSAAAVVVYD   81 (164)
T ss_dssp             HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCE------EEEEEEEECCSGGG-----GGGHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCccccceeeeccceeeccCCCc------eeeeecccCCcchh-----ccchHHHhhccceEEEeec
Confidence            355556555 57888999888 66666777777766      56999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      +++++||+++..|.+.+...  ..+++|++|||||+||.+..+...    ++++..     +++|+|+||++|.||+|++
T Consensus        82 ~~~~~s~~~i~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          82 ITNVNSFQQTTKWIDDVRTE--RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLF  154 (164)
T ss_dssp             TTCHHHHHTHHHHHHHHHHH--HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----TCEEEECCTTTCTTHHHHH
T ss_pred             cccccchhhhHhhHHHHHHh--cCCCceEEEEecccchhhhhhhhHHHHHHHHHHc-----CCEEEEecCCCCcCHHHHH
Confidence            99999999999888766543  457899999999999954322221    566666     7899999999999999975


Q ss_pred             hHH
Q psy13568        158 EVL  160 (485)
Q Consensus       158 Ev~  160 (485)
                      +.+
T Consensus       155 ~~i  157 (164)
T d1yzqa1         155 RRV  157 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.1e-22  Score=177.64  Aligned_cols=138  Identities=21%  Similarity=0.229  Sum_probs=112.3

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..+. +.|.+++.||+ .+...+++.+++..      ++|+||||+|||+|     ..+++.++++++++|+|||
T Consensus        18 KTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~Dt~G~e~~-----~~~~~~~~~~~~~~i~v~d   86 (171)
T d2ew1a1          18 KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK------VKLQIWDTAGQERF-----RSITQSYYRSANALILTYD   86 (171)
T ss_dssp             HHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----HHHHGGGSTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCcccccccceEEEEEEEECCEE------EEEEEEECCCchhh-----HHHHHHHHhccceEEEeee
Confidence            345555555 46788888888 78888888888887      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCch--hh--hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQR--DV--AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~R--qV--a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      ++++++|+++..|...+.+  ...+++|++|||||+|+.++.+.  +.  ++++..     +++++|+||++|.||++++
T Consensus        87 ~~~~~s~~~~~~~~~~i~~--~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~-----~~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          87 ITCEESFRCLPEWLREIEQ--YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ-----DMYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             TTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-----TCCEEECCTTTCTTHHHHH
T ss_pred             cccchhhhhhhhhhhhhcc--cccccccEEEEEeecccccccchhhhHHHHHHHhC-----CCEEEEEccCCCCCHHHHH
Confidence            9999999999988776654  34578999999999998532211  11  667666     7899999999999999964


Q ss_pred             hH
Q psy13568        158 EV  159 (485)
Q Consensus       158 Ev  159 (485)
                      +-
T Consensus       160 ~~  161 (171)
T d2ew1a1         160 LD  161 (171)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2e-21  Score=173.58  Aligned_cols=138  Identities=20%  Similarity=0.258  Sum_probs=111.3

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..++ +.|.+++.||+ .+....+...++..      ..++||||+|++++     ..+++.++++++++|+|||
T Consensus        17 KTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d   85 (167)
T d1z0ja1          17 KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNEL------HKFLIWDTAGLERF-----RALAPMYYRGSAAAIIVYD   85 (167)
T ss_dssp             HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----GGGTHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcccccccccccccccccccccc------cceeeeecCCchhh-----hHHHHHHHhhccceEEEee
Confidence            455666665 57888999988 55555666666665      46899999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMD  155 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~e  155 (485)
                      ++++++|++++.|...+..  ...++.|++|||||+||.  +++++      ++++..     +++|+|+||++|.||++
T Consensus        86 ~~~~~s~~~~~~~~~~~~~--~~~~~~~iilvgnK~Dl~--~~~~v~~~~~~~~~~~~-----~~~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          86 ITKEETFSTLKNWVRELRQ--HGPPSIVVAIAGNKCDLT--DVREVMERDAKDYADSI-----HAIFVETSAKNAININE  156 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHH--HSCTTSEEEEEEECTTCG--GGCCSCHHHHHHHHHHT-----TCEEEECBTTTTBSHHH
T ss_pred             echhhhhhhHHHhhhhhhh--ccCCcceEEEecccchhc--cccchhHHHHHHHHHHc-----CCEEEEEecCCCCCHHH
Confidence            9999999999998766554  346889999999999994  33333      566666     78999999999999999


Q ss_pred             hhhHHH
Q psy13568        156 GDEVLL  161 (485)
Q Consensus       156 a~Ev~L  161 (485)
                      +++.++
T Consensus       157 ~f~~l~  162 (167)
T d1z0ja1         157 LFIEIS  162 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            755443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.6e-21  Score=174.88  Aligned_cols=140  Identities=16%  Similarity=0.244  Sum_probs=111.3

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..+. +.|.+.+.||+ .+.+...+..+++.      ++|+||||||||+|     ..+++.+++++|++|+|||
T Consensus        18 KTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~wDt~G~e~~-----~~~~~~~~~~ad~~ilv~d   86 (169)
T d3raba_          18 KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR------IKLQIWDTAGQERY-----RTITTAYYRGAMGFILMYD   86 (169)
T ss_dssp             HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----HHHHHTTTTTCCEEEEEEE
T ss_pred             HHHHHHHHHcCCCCcccccccccceeeEEEEeecce------EEEEEEECCCchhh-----HHHHHHHHhcCCEEEEEEE
Confidence            355555554 56788888888 67777777777766      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchh----hhHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD----VAWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~Rq----Va~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      ++++++++.+..|.+.+..  ...++.|++|||||.|+.+..+..    .++++..     +++++|+||++|.|+++++
T Consensus        87 ~~~~~s~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~-----~~~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_          87 ITNEESFNAVQDWSTQIKT--YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-----GFEFFEASAKDNINVKQTF  159 (169)
T ss_dssp             TTCHHHHHTHHHHHHHHHH--HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-----TCEEEECBTTTTBSHHHHH
T ss_pred             Cccchhhhhhhhhhhhhhc--ccCCcceEEEEEeecccccccccchhhhHHHHHHc-----CCEEEEecCCCCcCHHHHH
Confidence            9999999999988765543  356789999999999995432211    1566666     7899999999999999975


Q ss_pred             hHHH
Q psy13568        158 EVLL  161 (485)
Q Consensus       158 Ev~L  161 (485)
                      +.++
T Consensus       160 ~~l~  163 (169)
T d3raba_         160 ERLV  163 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.6e-21  Score=173.15  Aligned_cols=140  Identities=19%  Similarity=0.290  Sum_probs=92.6

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ +.|.+++.||+ .+....++.++++.      +.|+||||+|+|.|     ..+++.++++++++|+|||
T Consensus        19 KTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~------~~l~i~D~~G~e~~-----~~~~~~~~~~~~~~i~v~d   87 (173)
T d2fu5c1          19 KTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR------IKLQIWDTAGQERF-----RTITTAYYRGAMGIMLVYD   87 (173)
T ss_dssp             ---------------CHHHHHCEEEEEEEEEETTEE------EEEEEEEC--------------CCTTTTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCccCccccceEEEEEEEECCEE------EEEEEEECCCchhh-----HHHHHHhccCCCEEEEEEE
Confidence            456666666 56788888888 67777888888877      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      +++++||+.+..|.+++..  ...++.|+++||||.|+....+...    ++++..     +++++|+||++|.|++|++
T Consensus        88 ~~~~~s~~~~~~~~~~~~~--~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~g~gv~e~f  160 (173)
T d2fu5c1          88 ITNEKSFDNIRNWIRNIEE--HASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-----GIKFMETSAKANINVENAF  160 (173)
T ss_dssp             TTCHHHHHHHHHHHHHHHH--HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-----TCEEEECCC---CCHHHHH
T ss_pred             CCChhhHHHHHHHHHHhhh--hccCCceEEEEEecccchhhcccHHHHHHHHHHhc-----CCEEEEEeCCCCCCHHHHH
Confidence            9999999999999877753  4578899999999999965333211    566666     7899999999999999976


Q ss_pred             hHHH
Q psy13568        158 EVLL  161 (485)
Q Consensus       158 Ev~L  161 (485)
                      +.++
T Consensus       161 ~~l~  164 (173)
T d2fu5c1         161 FTLA  164 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-21  Score=175.79  Aligned_cols=139  Identities=18%  Similarity=0.215  Sum_probs=109.8

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|.+++.||..+.+.+++.++++.+      .+++||++|++++     ..+++.+++++|++|+|||+
T Consensus        18 KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~~~~~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d~   86 (171)
T d2erya1          18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAA------RLDILDTAGQEEF-----GAMREQYMRTGEGFLLVFSV   86 (171)
T ss_dssp             HHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEE------EEEEEECC----C-----CHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCcccCcccccceeeeeeeccccc------ccccccccccccc-----cccccccccccceEEEeecc
Confidence            345555554 56788999999888899999998884      6999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchh---h-hHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD---V-AWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~Rq---V-a~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      ++++||+.+..|...+.+. ...++.|++|||||+||..+....   . +|++..     +++|+|+||++|.||+++++
T Consensus        87 ~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~e~Sak~~~~i~e~f~  160 (171)
T d2erya1          87 TDRGSFEEIYKFQRQILRV-KDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQL-----KVTYMEASAKIRMNVDQAFH  160 (171)
T ss_dssp             TCHHHHHTHHHHHHHHHHH-HTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHT-----TCEEEECBTTTTBSHHHHHH
T ss_pred             ccccchhhHHHHhHHHHhh-cccCCCCEEEEEeccchhhhccchHHHHHHHHHHc-----CCEEEEEcCCCCcCHHHHHH
Confidence            9999999999998766543 235689999999999995432111   1 777776     78999999999999999644


Q ss_pred             H
Q psy13568        159 V  159 (485)
Q Consensus       159 v  159 (485)
                      .
T Consensus       161 ~  161 (171)
T d2erya1         161 E  161 (171)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.9e-21  Score=173.58  Aligned_cols=139  Identities=19%  Similarity=0.275  Sum_probs=111.3

Q ss_pred             ceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          5 NSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         5 SiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      |+++..++ +.|.+++.|++ .+...+++.+++..+      .++||||+||+++     ..+++.+++++|++|+|||+
T Consensus        18 Tsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~D~~g~~~~-----~~~~~~~~~~~d~~ilv~d~   86 (166)
T d1z0fa1          18 SCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI------KLQIWDTAGQERF-----RAVTRSYYRGAAGALMVYDI   86 (166)
T ss_dssp             HHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEE------EEEEEECTTGGGT-----CHHHHHHHHTCSEEEEEEET
T ss_pred             HHHHHHHHhCCCCCcccccccccceeEEEEECCEEE------EEEEeccCCchhH-----HHHHHHHhcCCcEEEEEecc
Confidence            44454554 46788888877 666777888888874      6999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      ++++||+.+..|...+..  ...+..|++++|||+||.+......    ++++..     +++++|+||++|.||+|+++
T Consensus        87 ~~~~s~~~~~~~~~~~~~--~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1          87 TRRSTYNHLSSWLTDARN--LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-----GLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             TCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----TCEEEECCTTTCTTHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHh--hccccceEEEEcccccchhhcccHHHHHHHHHHHc-----CCEEEEEeCCCCCCHHHHHH
Confidence            999999999988777654  3567899999999999943222111    555555     78999999999999999755


Q ss_pred             HHH
Q psy13568        159 VLL  161 (485)
Q Consensus       159 v~L  161 (485)
                      .++
T Consensus       160 ~i~  162 (166)
T d1z0fa1         160 EAA  162 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.7e-21  Score=173.25  Aligned_cols=137  Identities=18%  Similarity=0.246  Sum_probs=110.5

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ +.|++++.||+ .+.....+..++..      +.+.+||++|+++|     ..+++.++++++++|+|||
T Consensus        19 KTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d   87 (170)
T d1r2qa_          19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT------VKFEIWDTAGQERY-----HSLAPMYYRGAQAAIVVYD   87 (170)
T ss_dssp             HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----GGGHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcccccccccccccceeeccceE------EEEEeccCCCchhh-----hhhHHHHhhCcceEEEEec
Confidence            355556665 67888999888 55555666666666      56999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMD  155 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~e  155 (485)
                      ++++++|+++..|...+.+  ...+++|++|||||+||..  ++++      ++++..     +++|+|+||++|.||++
T Consensus        88 ~~~~~s~~~~~~~~~~~~~--~~~~~~~iilvgnK~Dl~~--~~~v~~e~~~~~~~~~-----~~~~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          88 ITNEESFARAKNWVKELQR--QASPNIVIALSGNKADLAN--KRAVDFQEAQSYADDN-----SLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHHH--HSCTTCEEEEEEECGGGGG--GCCSCHHHHHHHHHHT-----TCEEEECCTTTCTTHHH
T ss_pred             cchhhHHHHHHHHhhhhhh--ccCCCceEEeecccccccc--cccccHHHHHHHHHhc-----CCEEEEeeCCCCCCHHH
Confidence            9999999999988766543  4578999999999999953  3433      555555     78999999999999999


Q ss_pred             hhhHH
Q psy13568        156 GDEVL  160 (485)
Q Consensus       156 a~Ev~  160 (485)
                      +++.+
T Consensus       159 ~f~~l  163 (170)
T d1r2qa_         159 IFMAI  163 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            75544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.8e-21  Score=176.16  Aligned_cols=141  Identities=9%  Similarity=-0.000  Sum_probs=108.2

Q ss_pred             cceehhcccccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCC
Q psy13568          4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVE   83 (485)
Q Consensus         4 rSiIfsn~i~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVt   83 (485)
                      +|+++..|+..-.+.+.||..+.+.+++.++++.+      .|+||||+|++++     .     |++++|++|+|||++
T Consensus        18 KTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~------~l~i~Dt~g~~~~-----~-----~~~~ad~~ilVfd~~   81 (175)
T d2bmja1          18 KSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH------LVLIREEAGAPDA-----K-----FSGWADAVIFVFSLE   81 (175)
T ss_dssp             HHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEE------EEEEEECSSCCCH-----H-----HHHHCSEEEEEEETT
T ss_pred             HHHHHHHHHhCCCCCcCCccceeEEEEeecCceEE------EEEEeeccccccc-----c-----cccccceeEEEeecc
Confidence            35555556554345667788788888999999884      6999999999887     2     688999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHcc-CCCCeEEEEEeCCCCCCCCchhh--hHHHHhhcccCCccceecchhhccCccchhhHH
Q psy13568         84 SRELDRDLHYYQSCLEAMLHN-SPDSKVFCLIHKIDLVHENQRDV--AWSSIVYQLIPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus        84 d~eSFe~I~~w~~~L~elk~~-sp~iPIILVGNK~DL~~e~~RqV--a~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      +++||+++..|.+++.+++.. .+++|++|||||.|+..+.++++  +-++.+..-..+++|+|+||+++.|++++|+.+
T Consensus        82 ~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l  161 (175)
T d2bmja1          82 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV  161 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHH
Confidence            999999999999998877543 46799999999999976666655  112222111237899999999999999964433

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.8e-21  Score=170.32  Aligned_cols=140  Identities=20%  Similarity=0.246  Sum_probs=113.8

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ ++|.+++.||+ .+...+++..+++.      +.|+||||+|++++     ..+++.+++++|++|+|||
T Consensus        16 KTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~------~~l~i~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d   84 (170)
T d1ek0a_          16 KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT------VKFEIWDTAGQERF-----ASLAPMYYRNAQAALVVYD   84 (170)
T ss_dssp             HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE------EEEEEEEECCSGGG-----GGGHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCccccccccceeecccccccccc------ccccccccCCchhH-----HHHHHHHHhccceEEEEEe
Confidence            455666665 56888999998 56667788888887      46999999999999     8899999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCC-Cchhh------hHHHHhhcccCCccceecchhhccCcc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE-NQRDV------AWSSIVYQLIPNVKELEQSLHLFATLM  154 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e-~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~  154 (485)
                      +++++||+++..|.+.+..  ...+..|++++|||+|+.++ ..+++      +|++..     +++|+|+||++|.||+
T Consensus        85 ~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~-----~~~~~e~Sak~g~gV~  157 (170)
T d1ek0a_          85 VTKPQSFIKARHWVKELHE--QASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEK-----GLLFFETSAKTGENVN  157 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHHH--HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-----TCEEEECCTTTCTTHH
T ss_pred             CCcccchhhhhhhhhhhcc--ccccccceeeeecccccccccchhhhhHHHHHHHHHHc-----CCEEEEecCCCCcCHH
Confidence            9999999999988765443  35678999999999998543 22333      667776     7899999999999999


Q ss_pred             chhhHHH
Q psy13568        155 DGDEVLL  161 (485)
Q Consensus       155 ea~Ev~L  161 (485)
                      ++|+.++
T Consensus       158 e~F~~i~  164 (170)
T d1ek0a_         158 DVFLGIG  164 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9755443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.9e-21  Score=176.36  Aligned_cols=144  Identities=21%  Similarity=0.270  Sum_probs=109.8

Q ss_pred             ceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEE----eccEEEEEEeCCCchhcchhhccccccccccCccEEEE
Q psy13568          5 NSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRF----LGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIY   78 (485)
Q Consensus         5 SiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~----~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~IL   78 (485)
                      |+++..++ +.|.+++.||. .+...+++.+++.....    ...++++||||+|||+|     +.+++.++++++++|+
T Consensus        19 TsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~-----~~~~~~~~~~~~~~i~   93 (186)
T d2f7sa1          19 TTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-----RSLTTAFFRDAMGFLL   93 (186)
T ss_dssp             HHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----HHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhh-----HHHHHHHHhcCCEEEE
Confidence            44555554 46788888888 56667777776554221    12478999999999999     8999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccC
Q psy13568         79 VFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFAT  152 (485)
Q Consensus        79 VFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~n  152 (485)
                      |||++++++|+.+..|...+... ...+++|++|||||.||.  .++++      +|++..     +++++|+||++|.|
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iilv~nK~Dl~--~~~~v~~~e~~~~~~~~-----~~~~~e~Sak~~~~  165 (186)
T d2f7sa1          94 MFDLTSQQSFLNVRNWMSQLQAN-AYCENPDIVLIGNKADLP--DQREVNERQARELADKY-----GIPYFETSAATGQN  165 (186)
T ss_dssp             EEETTCHHHHHHHHHHHHTCCCC-CTTTCCEEEEEEECTTCG--GGCCSCHHHHHHHHHHT-----TCCEEEEBTTTTBT
T ss_pred             EEeccccccceeeeeccchhhhh-ccCCCceEEEEeeeccch--hhhcchHHHHHHHHHHc-----CCEEEEEeCCCCCC
Confidence            99999999999999886543321 235789999999999995  33333      666666     78999999999999


Q ss_pred             ccchhhHHH
Q psy13568        153 LMDGDEVLL  161 (485)
Q Consensus       153 V~ea~Ev~L  161 (485)
                      ++++++.++
T Consensus       166 i~e~f~~l~  174 (186)
T d2f7sa1         166 VEKAVETLL  174 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999765544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.4e-20  Score=172.68  Aligned_cols=140  Identities=18%  Similarity=0.262  Sum_probs=112.3

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ +.|..++.||+ ......++.+++..      +.|+||||+|+|+|     ..+++.++++++++|+|||
T Consensus        19 KTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~------~~l~i~Dt~G~e~~-----~~~~~~~~~~a~~~i~v~d   87 (194)
T d2bcgy1          19 KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT------VKLQIWDTAGQERF-----RTITSSYYRGSHGIIIVYD   87 (194)
T ss_dssp             HHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEE------EEEEEECCTTTTTT-----TCCCGGGGTTCSEEEEEEE
T ss_pred             HHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEE------EEEEEEECCCchhh-----HHHHHHHhccCCEEEEEEe
Confidence            345555555 56788899888 44455677778777      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      ++++++|+.+..|...+.+  ...+++|++|||||+|+.+......    .+++..     +++++|+||++|.|+++++
T Consensus        88 ~t~~~s~~~~~~~~~~~~~--~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          88 VTDQESFNGVKMWLQEIDR--YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN-----KMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             TTCHHHHHHHHHHHHHHHH--HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-----TCCEEECCTTTCTTHHHHH
T ss_pred             CcchhhhhhHhhhhhhhhh--cccCCceEEEEEeccccccccchhHHHHhhhhhcc-----CcceEEEecCcCccHHHHH
Confidence            9999999999988777654  3568899999999999965332222    555555     7899999999999999976


Q ss_pred             hHHH
Q psy13568        158 EVLL  161 (485)
Q Consensus       158 Ev~L  161 (485)
                      +.++
T Consensus       161 ~~l~  164 (194)
T d2bcgy1         161 LTMA  164 (194)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.3e-21  Score=169.06  Aligned_cols=141  Identities=18%  Similarity=0.249  Sum_probs=114.8

Q ss_pred             cceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      +|+++..++ +.|++++.||+.+.+...+..+++.      +.+.+||++|++.+     ...++.++++++++|+|||+
T Consensus        16 KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~d~~~~~~~-----~~~~~~~~~~~~~~iiv~d~   84 (166)
T d1ctqa_          16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET------CLLDILDTAGQEEY-----SAMRDQYMRTGEGFLCVFAI   84 (166)
T ss_dssp             HHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEE------EEEEEEEECCCGGG-----HHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCccCCccceeeccceeeecee------eeeeeeeccCcccc-----ccchhhhhhcccccceeecc
Confidence            345555554 5678889999977777777777777      46999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchh--h-hHHHHhhcccCCccceecchhhccCccchhhH
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRD--V-AWSSIVYQLIPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~Rq--V-a~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      ++++||+++..|.+.+.+.. ..+++|++|||||+||.......  . +|++..     +++|+|+||++|.||+|+++.
T Consensus        85 ~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          85 NNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDLAARTVESRQAQDLARSY-----GIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             TCHHHHHTHHHHHHHHHHHH-TCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHH-----TCCEEECCTTTCTTHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHhc-CCCCCeEEEEecccccccccccHHHHHHHHHHh-----CCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999988777643 45789999999999995432111  1 677777     789999999999999997554


Q ss_pred             HH
Q psy13568        160 LL  161 (485)
Q Consensus       160 ~L  161 (485)
                      ++
T Consensus       159 i~  160 (166)
T d1ctqa_         159 LV  160 (166)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=169.01  Aligned_cols=141  Identities=16%  Similarity=0.252  Sum_probs=108.9

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..++ +.|..++.|++ .+.+..++.+++..      +.++|||++|+|+|     ..++..++++++++|+|||
T Consensus        17 KTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~d~~g~e~~-----~~~~~~~~~~~~~~i~v~d   85 (175)
T d2f9la1          17 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT------IKAQIWDTAGQERY-----RRITSAYYRGAVGALLVYD   85 (175)
T ss_dssp             HHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE------EEEEEEECSSGGGT-----TCCCHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCcccccccceeeeEEEEECCEE------EEEEecccCCcHHH-----HHHHHHHhhccCeEEEEEE
Confidence            345555554 45777888777 66667788888877      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      +++++||+.+..|.+.+...  ..+++|++|||||+||.++.....    .+.+..     +.+++|+||++|.|+++++
T Consensus        86 ~~~~~S~~~~~~~~~~i~~~--~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          86 IAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-----NLSFIETSALDSTNVEEAF  158 (175)
T ss_dssp             TTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----TCEEEECCTTTCTTHHHHH
T ss_pred             CCCcccchhHHHHHHHHHHh--cCCCCcEEEEEeeecccccccchHHHHHHhhccc-----CceEEEEecCCCcCHHHHH
Confidence            99999999999887766543  457899999999999964322222    333333     7899999999999999976


Q ss_pred             hHHHH
Q psy13568        158 EVLLF  162 (485)
Q Consensus       158 Ev~LF  162 (485)
                      +.++-
T Consensus       159 ~~l~~  163 (175)
T d2f9la1         159 KNILT  163 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66553

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.4e-21  Score=171.09  Aligned_cols=137  Identities=18%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             ceehhccccc-cc--CccceeEEEeeCeeEEEccEEEEEeccEEEEEEe---CCCchhcchhhccccccccccCccEEEE
Q psy13568          5 NSQFAAFIDE-FT--SNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWD---CGGQEAFMENYFTSQRDNIFRNVAVLIY   78 (485)
Q Consensus         5 SiIfsn~i~~-Ft--~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWD---TaGQE~f~~~y~~sl~~~yyr~adg~IL   78 (485)
                      |+++..+... +.  ..+.++.++++.+++.++++.+      .+.+||   |+||++|       +++.+++++|++|+
T Consensus        17 TsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------~~~~~d~~~~~g~e~~-------~~~~~~~~~~~~il   83 (172)
T d2g3ya1          17 STLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESA------TIILLDMWENKGENEW-------LHDHCMQVGDAYLI   83 (172)
T ss_dssp             HHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEE------EEEEECCTTTTHHHHH-------HHHCCCCCCSEEEE
T ss_pred             HHHHHHHHhCcCCccccccceeeecceeeeccCCcee------eeeeeccccccccccc-------cccccccccceeee
Confidence            4444444432 32  2333334788889999998875      467777   5578877       56778999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccC
Q psy13568         79 VFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFAT  152 (485)
Q Consensus        79 VFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~n  152 (485)
                      |||+++++||+++..|.+++... ...+++|++|||||+||.+  ++++      ++++..     +++|+|+||++|.|
T Consensus        84 vfd~t~~~s~~~~~~~~~~i~~~-~~~~~~piilvgnK~Dl~~--~~~v~~~~~~~~a~~~-----~~~~~e~Sak~g~~  155 (172)
T d2g3ya1          84 VYSITDRASFEKASELRIQLRRA-RQTEDIPIILVGNKSDLVR--CREVSVSEGRACAVVF-----DCKFIETSAAVQHN  155 (172)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTS-GGGTTSCEEEEEECTTCGG--GCCSCHHHHHHHHHHH-----TCEEEECBTTTTBS
T ss_pred             eecccccchhhhhhhhhhhhhhc-cccCCceEEEEeccccccc--cccccHHHHHHHHHHc-----CCeEEEEeCCCCcC
Confidence            99999999999999998776643 2357899999999999953  3333      566666     78999999999999


Q ss_pred             ccchhhHHHH
Q psy13568        153 LMDGDEVLLF  162 (485)
Q Consensus       153 V~ea~Ev~LF  162 (485)
                      ++++++.++-
T Consensus       156 i~~~f~~l~~  165 (172)
T d2g3ya1         156 VKELFEGIVR  165 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9997665553

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-20  Score=168.23  Aligned_cols=137  Identities=21%  Similarity=0.261  Sum_probs=108.2

Q ss_pred             ceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          5 NSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         5 SiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      |+++..++ ++|.+++.||. .+....++..+++.      +.++||||+|+++|     ..+++.++++++++|+|||+
T Consensus        19 Tsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~------~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~   87 (174)
T d2bmea1          19 SCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY------VKLQIWDTAGQERF-----RSVTRSYYRGAAGALLVYDI   87 (174)
T ss_dssp             HHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEE------EEEEEEEECCSGGG-----HHHHHTTSTTCSEEEEEEET
T ss_pred             HHHHHHHHhCCCCcccccccccceeeEEEEecCcc------eeEEEEECCCchhh-----hhhHHHHhhhCCEEEEEEec
Confidence            45555554 57888889887 44455666667766      46999999999999     88999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      +++++|+++..|...+..  ...+++|++|||||+|+..+.+...    ++++..     +++++|+||++|.|++++++
T Consensus        88 ~~~~s~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          88 TSRETYNALTNWLTDARM--LASQNIVIILCGNKKDLDADREVTFLEASRFAQEN-----ELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             TCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-----TCEEEECCTTTCTTHHHHHH
T ss_pred             ccchhHHHHhhhhccccc--ccCCceEEEEEEecccccchhchhhhHHHHHHHhC-----CCEEEEeeCCCCcCHHHHHH
Confidence            999999999988776554  3467899999999999843222211    555555     78999999999999999644


Q ss_pred             H
Q psy13568        159 V  159 (485)
Q Consensus       159 v  159 (485)
                      .
T Consensus       161 ~  161 (174)
T d2bmea1         161 Q  161 (174)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-20  Score=167.57  Aligned_cols=139  Identities=19%  Similarity=0.281  Sum_probs=104.5

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..++ ++|.+++.|+. .+.+......++..      +.+.+||++|++.+     ..+++.+++++|++|+|||
T Consensus        16 KTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~d~~g~~~~-----~~~~~~~~~~~d~~ilv~d   84 (173)
T d2a5ja1          16 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ------IKLQIWDTAGQESF-----RSITRSYYRGAAGALLVYD   84 (173)
T ss_dssp             HHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEE------EEEEEECCTTGGGT-----SCCCHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeE------EEEEeecccCccch-----hhHHHHHhhccCEEEEEEe
Confidence            345555554 56777887776 55555555566665      56999999999999     9999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      +++++||+.+..|.+.+.+  ...+++|++|||||+|+........    ++++..     +++|+|+||++|.||++++
T Consensus        85 ~~~~~sf~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~-----~~~~~e~Sa~tg~~V~e~f  157 (173)
T d2a5ja1          85 ITRRETFNHLTSWLEDARQ--HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-----GLIFMETSAKTACNVEEAF  157 (173)
T ss_dssp             TTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-----TCEEEEECTTTCTTHHHHH
T ss_pred             ecChHHHHhHHHHHHHHHH--hCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHc-----CCEEEEecCCCCCCHHHHH
Confidence            9999999999988776654  3467899999999999853221111    777776     7899999999999999964


Q ss_pred             hHH
Q psy13568        158 EVL  160 (485)
Q Consensus       158 Ev~  160 (485)
                      +.+
T Consensus       158 ~~i  160 (173)
T d2a5ja1         158 INT  160 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.8e-20  Score=163.60  Aligned_cols=139  Identities=19%  Similarity=0.281  Sum_probs=99.5

Q ss_pred             ceehhccc-ccccCcc-ceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          5 NSQFAAFI-DEFTSNT-FVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         5 SiIfsn~i-~~Ft~~y-~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      |+++..++ +.|.+++ .|++ .+.+..++.+++..      ++|+||||+|||++     ..+++.+++++|++|+|||
T Consensus        20 Tsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~Dt~G~e~~-----~~~~~~~~~~~d~~i~v~d   88 (170)
T d2g6ba1          20 TCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK------VKLQMWDTAGQERF-----RSVTHAYYRDAHALLLLYD   88 (170)
T ss_dssp             HHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE------EEEEEEECCCC-------------CCGGGCSEEEEEEE
T ss_pred             HHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcE------EEEEEEECCCchhh-----HHHHHHhhcCCceeEEEec
Confidence            44444454 3455444 4444 56666677777777      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCch--hh--hHHHHhhcccCCccceecchhhccCccchh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQR--DV--AWSSIVYQLIPNVKELEQSLHLFATLMDGD  157 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~R--qV--a~Akivq~LIpni~y~EtSAkt~~nV~ea~  157 (485)
                      +++++||+.+..|...+..  ...++.|++|||||.|+.++..-  +.  .+++..     +++++|+||++|.|+++++
T Consensus        89 ~~~~~s~~~~~~~~~~~~~--~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~-----~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          89 VTNKASFDNIQAWLTEIHE--YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-----GLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             TTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-----TCCEEECCTTTCTTHHHHH
T ss_pred             CCcccchhhhhhhhhhhhh--ccCCCceEEEEEeeechhhcccccHHHHHHHHHHc-----CCEEEEEeCCCCcCHHHHH
Confidence            9999999999988765544  34678999999999999643221  11  666666     7899999999999999976


Q ss_pred             hHHH
Q psy13568        158 EVLL  161 (485)
Q Consensus       158 Ev~L  161 (485)
                      +.++
T Consensus       162 ~~l~  165 (170)
T d2g6ba1         162 TAIA  165 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=9e-20  Score=162.30  Aligned_cols=140  Identities=15%  Similarity=0.274  Sum_probs=107.5

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      ||+++..++ ++|.+.+.||+ .+....++.+++..      +.++||||||||.|     ..+++.++++++++|+|||
T Consensus        15 KTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~------~~~~i~Dt~G~~~~-----~~~~~~~~~~~~~~i~v~d   83 (166)
T d1g16a_          15 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK------VKLQIWDTAGQERF-----RTITTAYYRGAMGIILVYD   83 (166)
T ss_dssp             HHHHHHHHHHCCCCC-------CCEEEEEEESSSCE------EEEEEECCTTGGGT-----SCCCHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEE------EEEEEEECCCchhh-----HHHHHHHHhcCCEEEEEEE
Confidence            345555554 46788889988 56667888888877      46999999999999     8999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcccCCccceecchhhccCccchhh
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      +++++||++++.|...+..  ...+..|++++++|.|+.+......   ++++..     +++++|+||+++.||+++++
T Consensus        84 ~~~~~s~~~~~~~~~~~~~--~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~e~f~  156 (166)
T d1g16a_          84 ITDERTFTNIKQWFKTVNE--HANDEAQLLLVGNKSDMETRVVTADQGEALAKEL-----GIPFIESSAKNDDNVNEIFF  156 (166)
T ss_dssp             TTCHHHHHTHHHHHHHHHH--HSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH-----TCCEEECBTTTTBSHHHHHH
T ss_pred             CCCccCHHHHHhhhhhhhc--cccCcceeeeecchhhhhhhhhhHHHHHHHHHhc-----CCeEEEECCCCCCCHHHHHH
Confidence            9999999999988776654  3467889999999999864332222   666666     78999999999999999755


Q ss_pred             HHH
Q psy13568        159 VLL  161 (485)
Q Consensus       159 v~L  161 (485)
                      .++
T Consensus       157 ~l~  159 (166)
T d1g16a_         157 TLA  159 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=7.7e-20  Score=162.01  Aligned_cols=137  Identities=18%  Similarity=0.234  Sum_probs=104.3

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ +.|++.+.||+ .+....+..+++..      ..+.+||++|++.+.    ...++.+++++|++|+|||
T Consensus        15 KTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~ilv~d   84 (165)
T d1z06a1          15 KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER------IKIQLWDTAGQERFR----KSMVQHYYRNVHAVVFVYD   84 (165)
T ss_dssp             HHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEE------EEEEEEECCCSHHHH----TTTHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCccCcccccccceeeeeeeccc------eEEEEEeccCchhhc----cccceeeecCCCceEEEEE
Confidence            355566665 67888888888 44445677777766      458999999988771    3457889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCccc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATLMD  155 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV~e  155 (485)
                      ++|++||+++..|...+.+. ...+++|++|||||+||.++  +++      +|++..     +++++|+||+++.+.++
T Consensus        85 ~~~~~s~~~~~~~~~~i~~~-~~~~~~pi~lvgnK~Dl~~~--~~v~~~~~~~~~~~~-----~~~~~e~SAkt~~~~~~  156 (165)
T d1z06a1          85 MTNMASFHSLPAWIEECKQH-LLANDIPRILVGNKCDLRSA--IQVPTDLAQKFADTH-----SMPLFETSAKNPNDNDH  156 (165)
T ss_dssp             TTCHHHHHTHHHHHHHHHHH-CCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHT-----TCCEEECCSSSGGGGSC
T ss_pred             eehhhhhhhhhhhhHHHHhh-ccCCCCeEEEEeccccchhc--cchhHHHHHHHHHHC-----CCEEEEEecccCCcCcC
Confidence            99999999999888776542 24578999999999999543  222      677766     78999999998664444


Q ss_pred             hhh
Q psy13568        156 GDE  158 (485)
Q Consensus       156 a~E  158 (485)
                      +.|
T Consensus       157 V~e  159 (165)
T d1z06a1         157 VEA  159 (165)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.9e-20  Score=166.30  Aligned_cols=141  Identities=15%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             cceehhccc-ccccCccceeEE-EeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMVV-ISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTIv-d~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ +.|.+.+.||.. +.......+.+..     .+.+++|||+|++++     ..++..++++++++|+|||
T Consensus        15 KSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-----~~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~ilv~d   84 (175)
T d1ky3a_          15 KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK-----VATMQVWDTAGQERF-----QSLGVAFYRGADCCVLVYD   84 (175)
T ss_dssp             HHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSC-----CEEEEEECCC---------------CCSTTCCEEEEEEE
T ss_pred             HHHHHHHHHcCCCCCccCcccccceeeeeeeecCcc-----cccceeeccCCchhh-----hhHHHHHhhccceEEEEee
Confidence            455555554 567778887762 2222222222222     256999999999999     8899999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHcc--CCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHN--SPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATL  153 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~--sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV  153 (485)
                      +++++||+.+..|.+.+.+....  .+++|++|||||+||.++ ++.+      ++++..    ..++++|+||++|.||
T Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~----~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          85 VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-KKIVSEKSAQELAKSL----GDIPLFLTSAKNAINV  159 (175)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHT----TSCCEEEEBTTTTBSH
T ss_pred             cccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh-hcchhHHHHHHHHHHc----CCCeEEEEeCCCCcCH
Confidence            99999999999998877665432  358999999999999532 1212      444443    4689999999999999


Q ss_pred             cchhhH
Q psy13568        154 MDGDEV  159 (485)
Q Consensus       154 ~ea~Ev  159 (485)
                      +++++.
T Consensus       160 ~e~f~~  165 (175)
T d1ky3a_         160 DTAFEE  165 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            996443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.4e-19  Score=160.90  Aligned_cols=138  Identities=22%  Similarity=0.326  Sum_probs=106.2

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ +.|.+++.||+ ......++.+++..      +.+++||++|++++     ...++.++.+++++|+|||
T Consensus        19 KSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~------~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~~~d   87 (174)
T d1wmsa_          19 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF------VTMQIWDTAGQERF-----RSLRTPFYRGSDCCLLTFS   87 (174)
T ss_dssp             HHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEE------EEEEEEECCCCGGG-----HHHHGGGGTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCccccceeeeeeeeeeeecCce------eeEeeecccCccee-----hhhhhhhhhccceEEEEEe
Confidence            344555554 57888899888 55556677777776      46999999999998     8899999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHcc--CCCCeEEEEEeCCCCCCCCchhh------hHHHHhhcccCCccceecchhhccCc
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHN--SPDSKVFCLIHKIDLVHENQRDV------AWSSIVYQLIPNVKELEQSLHLFATL  153 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~--sp~iPIILVGNK~DL~~e~~RqV------a~Akivq~LIpni~y~EtSAkt~~nV  153 (485)
                      +++++||+.+..|.+.+.+....  .+++|++|||||+||.+   +++      +|++..    .+++|+|+||+++.||
T Consensus        88 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~---~~v~~~~~~~~~~~~----~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          88 VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDN----GDYPYFETSAKDATNV  160 (174)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHT----TCCCEEECCTTTCTTH
T ss_pred             eecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh---ccCcHHHHHHHHHHc----CCCeEEEEcCCCCcCH
Confidence            99999999999998887766543  46799999999999953   222      455543    3689999999999999


Q ss_pred             cchhhH
Q psy13568        154 MDGDEV  159 (485)
Q Consensus       154 ~ea~Ev  159 (485)
                      +++++.
T Consensus       161 ~e~f~~  166 (174)
T d1wmsa_         161 AAAFEE  166 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            996443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=9.4e-19  Score=158.37  Aligned_cols=142  Identities=18%  Similarity=0.272  Sum_probs=110.0

Q ss_pred             cceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEe
Q psy13568          4 RNSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFD   81 (485)
Q Consensus         4 rSiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFD   81 (485)
                      +|+++..++ ++|..++.||+ .+....+....+..      +.+++|||+|++.+     ...++.++.+++++|+|||
T Consensus        15 KSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~------~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~i~~~d   83 (184)
T d1vg8a_          15 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL------VTMQIWDTAGQERF-----QSLGVAFYRGADCCVLVFD   83 (184)
T ss_dssp             HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCE------EEEEEEEECSSGGG-----SCSCCGGGTTCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCce------EEEEeeecCCcccc-----cccccccccCccEEEEeec
Confidence            344555554 57888999988 66666777766666      46899999999999     8899999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHcc--CCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcccCCccceecchhhccCccch
Q psy13568         82 VESRELDRDLHYYQSCLEAMLHN--SPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQLIPNVKELEQSLHLFATLMDG  156 (485)
Q Consensus        82 Vtd~eSFe~I~~w~~~L~elk~~--sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~LIpni~y~EtSAkt~~nV~ea  156 (485)
                      ++++++|++++.|.+.+......  .+++|++|||||+||.+......   .++..    ..+++++|+||++|.||+++
T Consensus        84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          84 VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----KNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----TTSCCEEECBTTTTBSHHHH
T ss_pred             ccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHH----hcCCeEEEEcCCCCcCHHHH
Confidence            99999999999998777654332  35789999999999954322211   33322    23789999999999999997


Q ss_pred             hhHH
Q psy13568        157 DEVL  160 (485)
Q Consensus       157 ~Ev~  160 (485)
                      ++.+
T Consensus       160 f~~l  163 (184)
T d1vg8a_         160 FQTI  163 (184)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-18  Score=156.75  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=109.3

Q ss_pred             ceehhccc-ccccCccceeE-EEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeC
Q psy13568          5 NSQFAAFI-DEFTSNTFVMV-VISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDV   82 (485)
Q Consensus         5 SiIfsn~i-~~Ft~~y~pTI-vd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDV   82 (485)
                      |+++..+. ++|.+++.+++ .+....++.+++..      +++.||||+|++++     ..+++.++++++++|+|||+
T Consensus        21 Tsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~Dt~G~~~~-----~~~~~~~~~~~~~ii~v~d~   89 (177)
T d1x3sa1          21 SSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK------AKLAIWDTAGQERF-----RTLTPSYYRGAQGVILVYDV   89 (177)
T ss_dssp             HHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE------EEEEEEEECSSGGG-----CCSHHHHHTTCCEEEEEEET
T ss_pred             HHHHHHHHhCCCCCccccceeecceeEEEEEeccc------cEEEEEECCCchhh-----HHHHHHHHhcCCEEEEEEEC
Confidence            44444444 46777888777 55556677777776      46999999999999     89999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcccCCccceecchhhccCccchhhH
Q psy13568         83 ESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQLIPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus        83 td~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      +++++|+.+..|...+.+. ......|+++++||.|+.+......   ++++..     +++++|+||++|.|++++   
T Consensus        90 ~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~-----~~~~~e~Sa~tg~gv~e~---  160 (177)
T d1x3sa1          90 TRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH-----SMLFIEASAKTCDGVQCA---  160 (177)
T ss_dssp             TCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT-----TCEEEECCTTTCTTHHHH---
T ss_pred             CCccccccchhhhhhhccc-ccccceeeEEEeeccccccccccHHHHHHHHHHC-----CCEEEEEeCCCCCCHHHH---
Confidence            9999999999887655431 1245699999999999854221111   566665     789999999999999995   


Q ss_pred             HHHHhhhheeee
Q psy13568        160 LLFERATFLVIS  171 (485)
Q Consensus       160 ~LFE~aT~LvIa  171 (485)
                        |+.....++.
T Consensus       161 --f~~l~~~l~~  170 (177)
T d1x3sa1         161 --FEELVEKIIQ  170 (177)
T ss_dssp             --HHHHHHHHHT
T ss_pred             --HHHHHHHHcc
Confidence              5544444443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.73  E-value=1.6e-18  Score=154.11  Aligned_cols=140  Identities=18%  Similarity=0.203  Sum_probs=99.3

Q ss_pred             ceehhccc-ccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCC
Q psy13568          5 NSQFAAFI-DEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVE   83 (485)
Q Consensus         5 SiIfsn~i-~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVt   83 (485)
                      |+++..+. +.|.+.+.||+        +++...+. .+++.+++||++|++.+     ...+..++++++++|+|||++
T Consensus        16 TsLl~~l~~~~~~~~~~~T~--------~~~~~~~~-~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1          16 TTFVNVIASGQFNEDMIPTV--------GFNMRKIT-KGNVTIKLWDIGGQPRF-----RSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             HHHHHHHHHSCCCCSCCCCC--------SEEEEEEE-ETTEEEEEEEECCSHHH-----HTTHHHHHTTCSEEEEEEETT
T ss_pred             HHHHHHHHcCCCCCcccccc--------eeeeeeee-eeeEEEEEeeccccccc-----cccccccccccchhhcccccc
Confidence            44444443 45666777655        33333322 23567999999999999     889999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCc-hhhhHHHHhh-cc--cCCccceecchhhccCccchhhH
Q psy13568         84 SRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQ-RDVAWSSIVY-QL--IPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus        84 d~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~-RqVa~Akivq-~L--Ipni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      ++++|+++..|...+.+ ....+++|++|||||+||.+... +++  .+... ..  -.+.+++|+||++|.|++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~~~~pi~lv~nK~Dl~~~~~~~~i--~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~  158 (164)
T d1zd9a1          82 DQEKIEASKNELHNLLD-KPQLQGIPVLVLGNKRDLPGALDEKEL--IEKMNLSAIQDREICCYSISCKEKDNIDITLQW  158 (164)
T ss_dssp             CGGGHHHHHHHHHHHHT-CGGGTTCCEEEEEECTTSTTCCCHHHH--HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             cccccchhhhhhhhhhh-hhcccCCcEEEEEeccccchhhhHHHH--HHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHH
Confidence            99999999877654432 12357899999999999964322 222  11111 11  12568999999999999998776


Q ss_pred             HH
Q psy13568        160 LL  161 (485)
Q Consensus       160 ~L  161 (485)
                      ++
T Consensus       159 l~  160 (164)
T d1zd9a1         159 LI  160 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.70  E-value=2.1e-17  Score=146.11  Aligned_cols=142  Identities=19%  Similarity=0.195  Sum_probs=97.6

Q ss_pred             cceehhcccccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCC
Q psy13568          4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVE   83 (485)
Q Consensus         4 rSiIfsn~i~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVt   83 (485)
                      +|+++..+.+.....+.||+        ++....+. .+++.+.||||+|++.+     +..++.++++++++++|||++
T Consensus        15 KTsLi~~l~~~~~~~~~~t~--------~~~~~~~~-~~~~~~~~~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_          15 KTTILKKFNGEDVDTISPTL--------GFNIKTLE-HRGFKLNIWDVGGQKSL-----RSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             HHHHHHHHTTCCCSSCCCCS--------SEEEEEEE-ETTEEEEEEEECCSHHH-----HTTGGGGCTTCSEEEEEEETT
T ss_pred             HHHHHHHHcCCCCCcccceE--------eeeeeecc-ccccceeeeecCcchhh-----hhHHHhhhhhhhcceeeeecc
Confidence            35555556555555566554        32222222 23467999999999999     889999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhhhHHHHh--hc-ccCCccceecchhhccCccchhhHH
Q psy13568         84 SRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIV--YQ-LIPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus        84 d~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqVa~Akiv--q~-LIpni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      |..+++++..|...+.. ....++.|++|||||+||.+....+. ..+..  .. -..+++++|+||++|.|++++++.+
T Consensus        81 d~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  158 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLV-EERLAGATLLIFANKQDLPGALSCNA-IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL  158 (165)
T ss_dssp             CGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHHH-HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhh-hcccCCCceEEEEeccccccccCHHH-HHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence            99999988755432221 12357899999999999964332222 11111  11 1235689999999999999987764


Q ss_pred             H
Q psy13568        161 L  161 (485)
Q Consensus       161 L  161 (485)
                      +
T Consensus       159 ~  159 (165)
T d1ksha_         159 L  159 (165)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.70  E-value=5.8e-18  Score=151.00  Aligned_cols=113  Identities=20%  Similarity=0.179  Sum_probs=85.7

Q ss_pred             ccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCC
Q psy13568         42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVH  121 (485)
Q Consensus        42 gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~  121 (485)
                      +++.+++||++|++.+     +..++.++++++++|+|||++++++|+++..|...+.. .....++|++|||||+||.+
T Consensus        58 ~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~-~~~~~~~pillv~nK~Dl~~  131 (176)
T d1fzqa_          58 QGFKLNVWDIGGQRKI-----RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE-EEKLSCVPVLIFANKQDLLT  131 (176)
T ss_dssp             TTEEEEEEECSSCGGG-----HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTT-CGGGTTCCEEEEEECTTSTT
T ss_pred             CCeeEeEeeccccccc-----hhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhh-hhccCCCeEEEEEEeccccc
Confidence            3577999999999999     88999999999999999999999999999876544332 12346799999999999975


Q ss_pred             CCchhhhHHHHhh-cc--cCCccceecchhhccCccchhhHHH
Q psy13568        122 ENQRDVAWSSIVY-QL--IPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       122 e~~RqVa~Akivq-~L--Ipni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      +.+.+. ..+.++ ..  ...++++|+||++|.|++|+++.++
T Consensus       132 ~~~~~~-~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~  173 (176)
T d1fzqa_         132 AAPASE-IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC  173 (176)
T ss_dssp             CCCHHH-HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cccHHH-HHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            433221 222211 01  1246799999999999999876544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.70  E-value=6.5e-18  Score=152.28  Aligned_cols=112  Identities=20%  Similarity=0.232  Sum_probs=80.6

Q ss_pred             ccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCC
Q psy13568         42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVH  121 (485)
Q Consensus        42 gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~  121 (485)
                      +++++.+||++|++.+     +.+++.++++++++|+|||++|++++.++..|...+.+ .....+.|++|||||+||.+
T Consensus        59 ~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~-~~~~~~~piliv~NK~Dl~~  132 (182)
T d1moza_          59 KNLKLNVWDLGGQTSI-----RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ-EEELQDAALLVFANKQDQPG  132 (182)
T ss_dssp             TTEEEEEEEEC----C-----CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTT-SSTTSSCEEEEEEECTTSTT
T ss_pred             CCEEEEEEeccccccc-----chhHHhhhccceeEEEEeeecccccchhHHHHHHHHHH-hhccCCcceEEEEEeecccc
Confidence            3577999999999999     89999999999999999999999999998877543221 12346899999999999964


Q ss_pred             CC-chhhhHHHHh--hcc-cCCccceecchhhccCccchhhHHH
Q psy13568        122 EN-QRDVAWSSIV--YQL-IPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       122 e~-~RqVa~Akiv--q~L-Ipni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      .. .+++  .+.+  ..+ -.+++++|+||++|.|++++++.++
T Consensus       133 ~~~~~~i--~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~  174 (182)
T d1moza_         133 ALSASEV--SKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI  174 (182)
T ss_dssp             CCCHHHH--HHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred             ccCHHHH--HHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHH
Confidence            32 2222  1111  111 1146799999999999999876643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.69  E-value=3.5e-17  Score=146.50  Aligned_cols=112  Identities=18%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE  122 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e  122 (485)
                      .+.++|||++|++.+     +..+..++++++++|+|||+++++++.++..|...+.+ .....+.|++|||||+||.+.
T Consensus        55 ~~~~~i~D~~g~~~~-----~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~-~~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          55 NVKFNVWDVGGQDKI-----RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             TEEEEEEEESCCGGG-----HHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHT-SGGGTTCEEEEEEECTTSTTC
T ss_pred             ceeeEEecCCCcchh-----hhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhh-hcccccceeeeeeeccccccc
Confidence            467999999999999     88999999999999999999999999999876543322 123468999999999999653


Q ss_pred             Cch-hhhHHHHhhccc-CCccceecchhhccCccchhhHH
Q psy13568        123 NQR-DVAWSSIVYQLI-PNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       123 ~~R-qVa~Akivq~LI-pni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      ... ++.....++.+. .++.++|+||++|.||+|+++.+
T Consensus       129 ~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l  168 (173)
T d1e0sa_         129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL  168 (173)
T ss_dssp             CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            222 221111111111 15679999999999999987765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=7.6e-16  Score=137.56  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHH-----------HHHHHHHHHHHHccCCCCeEE
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRD-----------LHYYQSCLEAMLHNSPDSKVF  111 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~-----------I~~w~~~L~elk~~sp~iPII  111 (485)
                      .++++||||+||+++     +.++..|+++++++++|||+++.++|..           +..|...+.  ....++.|++
T Consensus        41 ~~~~~i~D~~Gq~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~--~~~~~~~~~~  113 (195)
T d1svsa1          41 DLHFKMFDVGGQRSE-----RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN--NKWFTDTSII  113 (195)
T ss_dssp             TEEEEEEEECCSGGG-----GGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT--CGGGTTSEEE
T ss_pred             eeeeeeecccccccc-----ccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhc--ccccCCCCEE
Confidence            467999999999999     9999999999999999999999988733           333433222  1235689999


Q ss_pred             EEEeCCCCCCCCch---------------h-hhHH----HHhhcc-----cCCccceecchhhccCccchhhH
Q psy13568        112 CLIHKIDLVHENQR---------------D-VAWS----SIVYQL-----IPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus       112 LVGNK~DL~~e~~R---------------q-Va~A----kivq~L-----Ipni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      ++|||.|+..+...               . .+.+    ..+..+     ...+.++||||+++.||+++|+.
T Consensus       114 lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~  186 (195)
T d1svsa1         114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA  186 (195)
T ss_dssp             EEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             EEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHH
Confidence            99999997321000               0 0111    111111     12356789999999999997654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.52  E-value=4.9e-15  Score=127.86  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=84.6

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE  122 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e  122 (485)
                      .+++.+||++|++.+     ...+..++++++++|++||+++++++..+..|...+.. .......|++++|||.|+...
T Consensus        43 ~~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~k~d~~~~  116 (160)
T d1r8sa_          43 NISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNA  116 (160)
T ss_dssp             SCEEEEEECCCCGGG-----HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTC
T ss_pred             eEEEEEecCCCcccc-----hhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHH-hhcccCceEEEEeeccccccc
Confidence            367999999999999     88899999999999999999999999999877554432 123467899999999999654


Q ss_pred             Cch-hhhHHHHhh-cccCCccceecchhhccCccchhhHH
Q psy13568        123 NQR-DVAWSSIVY-QLIPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       123 ~~R-qVa~Akivq-~LIpni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      ... ++....... ....+++++|+||++|.|++|+++.+
T Consensus       117 ~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l  156 (160)
T d1r8sa_         117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  156 (160)
T ss_dssp             CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence            332 231111110 01126789999999999999976654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.6e-14  Score=129.32  Aligned_cols=124  Identities=13%  Similarity=0.140  Sum_probs=84.6

Q ss_pred             eeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcc-----------hHHHHHHHHHH
Q psy13568         29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRE-----------LDRDLHYYQSC   97 (485)
Q Consensus        29 ~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~e-----------SFe~I~~w~~~   97 (485)
                      ||++++...+. .+.+++++||++||+.+     +..|..++++++++++|||+++.+           +++.++.|.+.
T Consensus        31 pTiG~~~~~~~-~~~~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  104 (200)
T d2bcjq2          31 PTTGIIEYPFD-LQSVIFRMVDVGGQRSE-----RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI  104 (200)
T ss_dssp             CCCSCEEEEEE-CSSCEEEEEECCCSTTG-----GGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             ceeeEEEEEEe-ccceeeeeccccccccc-----cccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHH
Confidence            44454444432 23577999999999999     999999999999999999998864           46677777665


Q ss_pred             HHHHHccCCCCeEEEEEeCCCCCCCCchhh-----------------hHHH----Hhhcc----cCCccceecchhhccC
Q psy13568         98 LEAMLHNSPDSKVFCLIHKIDLVHENQRDV-----------------AWSS----IVYQL----IPNVKELEQSLHLFAT  152 (485)
Q Consensus        98 L~elk~~sp~iPIILVGNK~DL~~e~~RqV-----------------a~Ak----ivq~L----Ipni~y~EtSAkt~~n  152 (485)
                      +.+  ...+++|++++|||.|+.++.....                 .-.+    ....+    -..+.++||||+++.|
T Consensus       105 l~~--~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~n  182 (200)
T d2bcjq2         105 ITY--PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTEN  182 (200)
T ss_dssp             HHC--GGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHH
T ss_pred             Hhh--hhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHh
Confidence            542  2357899999999999842111000                 0000    01000    1124478999999999


Q ss_pred             ccchhhHH
Q psy13568        153 LMDGDEVL  160 (485)
Q Consensus       153 V~ea~Ev~  160 (485)
                      |+++|+.+
T Consensus       183 i~~vF~~i  190 (200)
T d2bcjq2         183 IRFVFAAV  190 (200)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99976553

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.9e-14  Score=129.60  Aligned_cols=139  Identities=9%  Similarity=0.062  Sum_probs=81.5

Q ss_pred             ceehhcccccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCC
Q psy13568          5 NSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVES   84 (485)
Q Consensus         5 SiIfsn~i~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd   84 (485)
                      |+++..+  .|...+.||        +|++...+.. +.+++++||++||+.+     +..+..++++++++++|||.++
T Consensus        16 Tsll~r~--~f~~~~~pT--------iG~~~~~~~~-~~~~~~~~D~~gq~~~-----~~~~~~~~~~~~~~~~~~~~~~   79 (200)
T d1zcba2          16 STFLKQM--RIIHGQDPT--------KGIHEYDFEI-KNVPFKMVDVGGQRSE-----RKRWFECFDSVTSILFLVSSSE   79 (200)
T ss_dssp             HHHHHHH--HHHHSCCCC--------SSEEEEEEEE-TTEEEEEEEECC------------CTTSCTTCCEEEEEEETTC
T ss_pred             HHHHHHH--hcCCCCCCe--------eeeEEEEEee-eeeeeeeecccceeee-----cccccccccccceeEEEEEcCC
Confidence            4444444  455666654        4444433332 3467999999999999     8999999999999999999998


Q ss_pred             cchH-------HHHHHHHHHHHHHHc--cCCCCeEEEEEeCCCCCCCCchh-----------------hh----HHHHhh
Q psy13568         85 RELD-------RDLHYYQSCLEAMLH--NSPDSKVFCLIHKIDLVHENQRD-----------------VA----WSSIVY  134 (485)
Q Consensus        85 ~eSF-------e~I~~w~~~L~elk~--~sp~iPIILVGNK~DL~~e~~Rq-----------------Va----~Akivq  134 (485)
                      ..++       .....|..++..+..  ...++|++|+|||+||.++....                 .+    ..+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~  159 (200)
T d1zcba2          80 FDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFR  159 (200)
T ss_dssp             TTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHH
T ss_pred             cceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHH
Confidence            6543       223333333343322  34689999999999984211000                 01    111111


Q ss_pred             cccC-----CccceecchhhccCccchhhH
Q psy13568        135 QLIP-----NVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus       135 ~LIp-----ni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      .+.+     .+..++|||+++.||+++++.
T Consensus       160 ~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~  189 (200)
T d1zcba2         160 GKRRDQQQRPLYHHFTTAINTENIRLVFRD  189 (200)
T ss_dssp             TTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             HhccCCCCCceEEEEeeeeCcHHHHHHHHH
Confidence            1111     234568999999999987654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=114.87  Aligned_cols=112  Identities=19%  Similarity=0.136  Sum_probs=81.6

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHE  122 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e  122 (485)
                      ++.+.+||++|++..     +..+..++++++++++|+|.++.++++....+...... .....+.|++|||||+||...
T Consensus        58 ~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~  131 (177)
T d1zj6a1          58 NTRFLMWDIGGQESL-----RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA-HEDLRKAGLLIFANKQDVKEC  131 (177)
T ss_dssp             TEEEEEEECCC---------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHT-SGGGTTCEEEEEEECTTSTTC
T ss_pred             ceEEEEecccccccc-----ccchhhhhccceeeeeecccccccchhhhhhhhhhhhh-cccccceEEEEEEEccccccc
Confidence            467999999999999     88999999999999999999999999988765443332 234578999999999999754


Q ss_pred             CchhhhHHHHhh---cccCCccceecchhhccCccchhhHHH
Q psy13568        123 NQRDVAWSSIVY---QLIPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       123 ~~RqVa~Akivq---~LIpni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      ...+ +.++...   ..-.+.+++|+||++|.|++|+++.+.
T Consensus       132 ~~~~-~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~  172 (177)
T d1zj6a1         132 MTVA-EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM  172 (177)
T ss_dssp             CCHH-HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             CcHH-HHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            4322 1222111   111256899999999999999877665

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=9.9e-13  Score=117.55  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             cEEEEEEeCCCchhcch---hhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCC
Q psy13568         43 NLVLNLWDCGGQEAFME---NYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL  119 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~---~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL  119 (485)
                      +..+.+|||+|++....   .++.......++++|++|+|+|++++.+..+ +.|.+++   ++..++.|+++|+||+|+
T Consensus        52 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l---~~~~~~~piilv~NK~Dl  127 (178)
T d1wf3a1          52 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARAL---KPLVGKVPILLVGNKLDA  127 (178)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHH---GGGTTTSCEEEEEECGGG
T ss_pred             eeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhhe---eccccchhhhhhhccccc
Confidence            34589999999855411   1112233445789999999999998766554 3444443   445678999999999999


Q ss_pred             CCCCchhhhHHHHhhcccCCccceecchhhccCccchhhHH
Q psy13568        120 VHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       120 ~~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      .+..+   .+.+.++...+...++++||+++.|+++..+.+
T Consensus       128 ~~~~~---~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i  165 (178)
T d1wf3a1         128 AKYPE---EAMKAYHELLPEAEPRMLSALDERQVAELKADL  165 (178)
T ss_dssp             CSSHH---HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCHH---HHHHHHHhhcccCceEEEecCCCCCHHHHHHHH
Confidence            54322   333444455667788999999999999854443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=2.6e-12  Score=109.75  Aligned_cols=140  Identities=13%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             cceehhcccccccCccceeEEEeeCeeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCC
Q psy13568          4 RNSQFAAFIDEFTSNTFVMVVISDPNILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVE   83 (485)
Q Consensus         4 rSiIfsn~i~~Ft~~y~pTIvd~y~~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVt   83 (485)
                      ||+++..+.+.....+.||+        +.....+. .+++.+.+||++|++.+     ...++.+++.++++++++|.+
T Consensus        13 KSSLln~l~~~~~~~~~~t~--------~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~   78 (166)
T d2qtvb1          13 KTTLLHMLKNDRLATLQPTW--------HPTSEELA-IGNIKFTTFDLGGHIQA-----RRLWKDYFPEVNGIVFLVDAA   78 (166)
T ss_dssp             HHHHHHHHHHSCCCCCCCCC--------SCEEEEEC-CTTCCEEEEECCCSGGG-----GGGGGGGCTTCSEEEEEEETT
T ss_pred             HHHHHHHHhCCCCCeeecee--------eEeEEEec-cCCeeEEEEeeccchhh-----hhhHhhhhhheeeeeeecccc
Confidence            45566666665555566554        21111111 12456889999999999     889999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhhhHHHHh----------hcccCCccceecchhhccCc
Q psy13568         84 SRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIV----------YQLIPNVKELEQSLHLFATL  153 (485)
Q Consensus        84 d~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqVa~Akiv----------q~LIpni~y~EtSAkt~~nV  153 (485)
                      ++.++.....|...+.+. ....+.|+++++||.|+....... ...+.+          ......++++|+||++|.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          79 DPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNAVSEA-ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             CGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSCCCHH-HHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             chhhhhhhhHHHHhhhhh-hccCCceEEEEeccccccccCCHH-HHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            999999888765443321 234689999999999996432111 111111          11122467999999999999


Q ss_pred             cchhhH
Q psy13568        154 MDGDEV  159 (485)
Q Consensus       154 ~ea~Ev  159 (485)
                      +|+++.
T Consensus       157 ~e~~~~  162 (166)
T d2qtvb1         157 LEAFQW  162 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.23  E-value=1.4e-11  Score=106.23  Aligned_cols=114  Identities=17%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             ccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCC
Q psy13568         42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVH  121 (485)
Q Consensus        42 gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~  121 (485)
                      +.+.+.+||++|.+.+     ......++...+++++++|+++.+++.....|.....+ ....++.|+++++||.|+..
T Consensus        47 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iv~nk~Dl~~  120 (169)
T d1upta_          47 KNLKFQVWDLGGLTSI-----RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE-EEELRKAILVVFANKQDMEQ  120 (169)
T ss_dssp             TTEEEEEEEECCCGGG-----GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTT
T ss_pred             CceEEEEeeccccccc-----cccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhh-hhccccceEEEEEeeccccc
Confidence            3467899999999999     88888999999999999999999999988866433332 22357899999999999975


Q ss_pred             CCchhhhHHHHhh--cccCCccceecchhhccCccchhhHHH
Q psy13568        122 ENQRDVAWSSIVY--QLIPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       122 e~~RqVa~Akivq--~LIpni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      +.....-......  ..-.+++++|+||++|.|++++++.++
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~  162 (169)
T d1upta_         121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  162 (169)
T ss_dssp             CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            4433221111111  112367899999999999999766553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=5.7e-12  Score=114.92  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchH-HHH-HHHHHHHHHHHccCCCCeEEEEEeCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELD-RDL-HYYQSCLEAMLHNSPDSKVFCLIHKIDLV  120 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSF-e~I-~~w~~~L~elk~~sp~iPIILVGNK~DL~  120 (485)
                      .+.+.+||++|++.+.    ...+..++++++++|+|+|+++..++ .+. +.|.+++........++|++|||||+||.
T Consensus        46 ~~~~~~~d~~g~~~~~----~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~  121 (207)
T d2fh5b1          46 GNSLTLIDLPGHESLR----FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA  121 (207)
T ss_dssp             CCEEEEEECCCCHHHH----HHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred             eeeeeeeecccccccc----chhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccC
Confidence            4679999999999881    24678888999999999999998764 343 34445555444445679999999999997


Q ss_pred             CC
Q psy13568        121 HE  122 (485)
Q Consensus       121 ~e  122 (485)
                      ..
T Consensus       122 ~a  123 (207)
T d2fh5b1         122 MA  123 (207)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=2e-11  Score=113.87  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=62.2

Q ss_pred             eeEEEccEEEEEeccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcch-----------HHHHHHHHHH
Q psy13568         29 NILEVEHSHVRFLGNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESREL-----------DRDLHYYQSC   97 (485)
Q Consensus        29 ~TI~Vd~~~V~~~gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eS-----------Fe~I~~w~~~   97 (485)
                      ||+|++...+.+ +++++++||++||+.+     +..|..++++++++|+|+|+++.+.           .+.+..|.+.
T Consensus        33 pTiG~~~~~~~~-~~~~~~~~D~~Gq~~~-----r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~i  106 (221)
T d1azta2          33 LTSGIFETKFQV-DKVNFHMFDVGGQRDE-----RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI  106 (221)
T ss_dssp             CCCSCEEEEEEE-TTEEEEEEECCCSTTT-----TTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEE-CcEEEEEEecCcccee-----ccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHH
Confidence            566655554443 4578999999999999     9999999999999999999987542           2333334332


Q ss_pred             HHHHHccCCCCeEEEEEeCCCCC
Q psy13568         98 LEAMLHNSPDSKVFCLIHKIDLV  120 (485)
Q Consensus        98 L~elk~~sp~iPIILVGNK~DL~  120 (485)
                      +.  .....++|++|+|||+||.
T Consensus       107 l~--~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2         107 WN--NRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             HT--CGGGSSCEEEEEEECHHHH
T ss_pred             hc--ChhhCCCcEEEEechhhhh
Confidence            22  1234689999999999994

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.13  E-value=5.3e-11  Score=104.01  Aligned_cols=111  Identities=12%  Similarity=0.081  Sum_probs=77.1

Q ss_pred             EEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCC
Q psy13568         44 LVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHEN  123 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~  123 (485)
                      ..+.+||+.|++.+     ...+..+++..+++++++|+++++.+.....+...... ....++.|++|++||.|++...
T Consensus        57 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~K~D~~~~~  130 (186)
T d1f6ba_          57 MTFTTFDLGGHIQA-----RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT-DETIANVPILILGNKIDRPEAI  130 (186)
T ss_dssp             EEEEEEEECC---------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTSCEEEEEECTTSTTCC
T ss_pred             cccccccccchhhh-----hhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhc-ccccCCCceEEEEeccCccccC
Confidence            45789999999999     78899999999999999999999999988755433222 2235789999999999996532


Q ss_pred             chhhhHHHHhh---------------cccCCccceecchhhccCccchhhHHH
Q psy13568        124 QRDVAWSSIVY---------------QLIPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       124 ~RqVa~Akivq---------------~LIpni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      ... ...+..+               .-..+++++|+||++|.|++|+++.+.
T Consensus       131 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~  182 (186)
T d1f6ba_         131 SEE-RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA  182 (186)
T ss_dssp             CHH-HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             CHH-HHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            211 1111110               001135799999999999999877543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=9.4e-12  Score=108.31  Aligned_cols=106  Identities=9%  Similarity=0.047  Sum_probs=76.6

Q ss_pred             EEEEEEeCCCchhcchh---hccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCC
Q psy13568         44 LVLNLWDCGGQEAFMEN---YFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLV  120 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~---y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~  120 (485)
                      ..+.+||++|..+..+.   +.......++.++|++|+++|..+.++++....|.+.+..   ...+.|++||+||+||.
T Consensus        49 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~iilv~NK~Dl~  125 (161)
T d2gj8a1          49 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR---LPAKLPITVVRNKADIT  125 (161)
T ss_dssp             EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH---SCTTCCEEEEEECHHHH
T ss_pred             ceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhh---cccccceeeccchhhhh
Confidence            45789999997554111   1112234567899999999999999999888887665543   35679999999999996


Q ss_pred             CCCchhhhHHHHhhcccCCccceecchhhccCccchhhHH
Q psy13568        121 HENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       121 ~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      ++..   ...     .+++.+++++||+++.|+++..+.+
T Consensus       126 ~~~~---~~~-----~~~~~~~~~iSAk~~~gi~~L~~~l  157 (161)
T d2gj8a1         126 GETL---GMS-----EVNGHALIRLSARTGEGVDVLRNHL  157 (161)
T ss_dssp             CCCC---EEE-----EETTEEEEECCTTTCTTHHHHHHHH
T ss_pred             hhHH---HHH-----HhCCCcEEEEECCCCCCHHHHHHHH
Confidence            4332   111     2347899999999999999865443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=5.5e-11  Score=105.94  Aligned_cols=112  Identities=18%  Similarity=0.071  Sum_probs=72.4

Q ss_pred             cEEEEEEeCCCchhcchhhc--cccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYF--TSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLV  120 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~--~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~  120 (485)
                      ..++++|||+|...-.+...  .......+..++++++++|.... .++.+..|.+++........+.|+++|+||+|+.
T Consensus        48 ~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          48 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             CCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            45689999999543200000  01112346788999999998654 4466666666665543333467999999999996


Q ss_pred             CCCchhhhHHHHhhcccCCccceecchhhccCccchhh
Q psy13568        121 HENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDE  158 (485)
Q Consensus       121 ~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~E  158 (485)
                      ++++.+ ...+.++.  .+.+++++||++|.|+++..+
T Consensus       127 ~~~~~~-~~~~~~~~--~~~~~~~iSA~tg~gid~L~~  161 (180)
T d1udxa2         127 EEEAVK-ALADALAR--EGLAVLPVSALTGAGLPALKE  161 (180)
T ss_dssp             CHHHHH-HHHHHHHT--TTSCEEECCTTTCTTHHHHHH
T ss_pred             hHHHHH-HHHHHHHh--cCCeEEEEEcCCCCCHHHHHH
Confidence            433222 33333332  478999999999999998544

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=6.6e-10  Score=96.23  Aligned_cols=107  Identities=14%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             EEEEEEeCCCchhcchhhcc----ccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCC
Q psy13568         44 LVLNLWDCGGQEAFMENYFT----SQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL  119 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~y~~----sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL  119 (485)
                      ..+.+|||+|-.........    ......+.++|++|+|+|.+++.+.+...-+.    .    ....++++++||+|+
T Consensus        48 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~----~----~~~~~~i~~~~k~d~  119 (160)
T d1xzpa2          48 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE----R----IKNKRYLVVINKVDV  119 (160)
T ss_dssp             EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHH----H----HTTSSEEEEEEECSS
T ss_pred             eeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhh----h----cccccceeeeeeccc
Confidence            45889999994322000000    01111256899999999999998877654331    1    245789999999999


Q ss_pred             CCCCchhhhHHHHhhcccCCccceecchhhccCccchhhHHHH
Q psy13568        120 VHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLLF  162 (485)
Q Consensus       120 ~~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev~LF  162 (485)
                      .+..+.+    +....+-++.+++++||+++.|+++..+.+.-
T Consensus       120 ~~~~~~~----~~~~~~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         120 VEKINEE----EIKNKLGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             CCCCCHH----HHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             cchhhhH----HHHHHhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            7644332    22333345788999999999999997776544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.82  E-value=1.3e-09  Score=97.66  Aligned_cols=109  Identities=13%  Similarity=0.079  Sum_probs=76.2

Q ss_pred             ccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCC
Q psy13568         42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVH  121 (485)
Q Consensus        42 gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~  121 (485)
                      ++..+.++|++|+++|     .......+..+|++++|+|.++....+..+-| .++..     .++|+++|.||+|+.+
T Consensus        57 ~~~~~~~~d~~g~~~~-----~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~-----~~~p~iiv~NKiD~~~  125 (179)
T d1wb1a4          57 ENYRITLVDAPGHADL-----IRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAG  125 (179)
T ss_dssp             TTEEEEECCCSSHHHH-----HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSC
T ss_pred             CCcccccccccccccc-----ccchhhhhhhccccccccccccccchhhhhhh-hhhhh-----cCCcceeccccccccC
Confidence            4567899999999999     55666677899999999999987655444333 22332     3689999999999975


Q ss_pred             CCchhh---hHHHHhhc--ccCCccceecchhhccCccchhhHHH
Q psy13568        122 ENQRDV---AWSSIVYQ--LIPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       122 e~~RqV---a~Akivq~--LIpni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      .++.+.   .+.++.+.  -+++.+++.+||++|.|+++..+.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~  170 (179)
T d1wb1a4         126 TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII  170 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHH
Confidence            432211   12222211  12356889999999999999777654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=6e-09  Score=91.66  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=70.1

Q ss_pred             cEEEEEEeCCCchhcc----hhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCC
Q psy13568         43 NLVLNLWDCGGQEAFM----ENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKID  118 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~----~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~D  118 (485)
                      ...+.+||++|....-    ..+........+..+|+++++.|.++....+. ..|.+++..     .+.|+++|+||+|
T Consensus        47 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~-----~~~pviiv~NK~D  120 (171)
T d1mkya1          47 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK-----STVDTILVANKAE  120 (171)
T ss_dssp             TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH-----HTCCEEEEEESCC
T ss_pred             ccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-ccccccccc-----ccccccccchhhh
Confidence            4568999999953221    01112233445678999999999887666544 345454443     2578999999999


Q ss_pred             CCCCCchhhhHHHHhhcccCCccceecchhhccCccchhhHHH
Q psy13568        119 LVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       119 L~~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      +.++  .+.+..+.+.++ +..+.+++||++|.|+++..+.++
T Consensus       121 l~~~--~~~~~~~~~~~~-~~~~~i~iSAk~g~gid~L~~~i~  160 (171)
T d1mkya1         121 NLRE--FEREVKPELYSL-GFGEPIPVSAEHNINLDTMLETII  160 (171)
T ss_dssp             SHHH--HHHHTHHHHGGG-SSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             hhhh--hhhHHHHHHHhc-CCCCeEEEecCCCCCHHHHHHHHH
Confidence            9532  222222233222 244678999999999999766553

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=1.5e-08  Score=89.79  Aligned_cols=110  Identities=13%  Similarity=0.109  Sum_probs=65.9

Q ss_pred             EEEEEeCCCchhcch-------hhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCC
Q psy13568         45 VLNLWDCGGQEAFME-------NYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKI  117 (485)
Q Consensus        45 kLqIWDTaGQE~f~~-------~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~  117 (485)
                      .+.++|++|......       ..........++.+|++++|+|.+.....+. ..|..++..     .+.|+++|+||+
T Consensus        57 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~i~v~nK~  130 (186)
T d1mkya2          57 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER-----RGRASVVVFNKW  130 (186)
T ss_dssp             EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECG
T ss_pred             eeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH-----cCCceeeeccch
Confidence            367788888654310       0001222334578899999999987654333 334443332     357999999999


Q ss_pred             CCCCCCchhh-hHHHHhh---cccCCccceecchhhccCccchhhHH
Q psy13568        118 DLVHENQRDV-AWSSIVY---QLIPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       118 DL~~e~~RqV-a~Akivq---~LIpni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      |+....+... ++.+.+.   ...+..+.+++||++|.|+++..+.+
T Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i  177 (186)
T d1mkya2         131 DLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM  177 (186)
T ss_dssp             GGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHH
T ss_pred             hhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHH
Confidence            9865444322 2222222   22345678999999999999865543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.60  E-value=4.8e-08  Score=90.94  Aligned_cols=69  Identities=22%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             EEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCC
Q psy13568         44 LVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHEN  123 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~  123 (485)
                      .++.++||||++.|     .......+..+|++|+|+|..+.-.-+..+-| +++.+     .+.|+|||.||+|+...+
T Consensus        70 ~~~~~iDtPGh~~f-----~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          70 PGLFFIDTPGHEAF-----TTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YRTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             CEEEEECCCTTSCC-----TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGSTTC
T ss_pred             cccccccccceecc-----cccchhcccccceEEEEEecccCcccchhHHH-HHhhc-----CCCeEEEEEECccCCCch
Confidence            46899999999999     66666778899999999999875444433333 22332     368999999999996543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.59  E-value=1.1e-08  Score=90.94  Aligned_cols=111  Identities=11%  Similarity=-0.013  Sum_probs=65.2

Q ss_pred             EEEEEeCCCchhcchhhcccccc---ccccCccEEEEEEeCCCcchHHHHHHHH--HHHHHHH-ccCCCCeEEEEEeCCC
Q psy13568         45 VLNLWDCGGQEAFMENYFTSQRD---NIFRNVAVLIYVFDVESRELDRDLHYYQ--SCLEAML-HNSPDSKVFCLIHKID  118 (485)
Q Consensus        45 kLqIWDTaGQE~f~~~y~~sl~~---~yyr~adg~ILVFDVtd~eSFe~I~~w~--~~L~elk-~~sp~iPIILVGNK~D  118 (485)
                      .+++|||||..+.... ...+..   ..+..++.++++.+....+.......+.  ....... ....+.|+++|+||+|
T Consensus        50 ~~~~~DtpG~~~~~~~-~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~D  128 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQ-GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  128 (185)
T ss_dssp             EEEEEEHHHHHHHTTC-TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             EEEEecCCCcccCchH-HHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccc
Confidence            4789999996432000 011111   1234578888888776554333332221  1112111 1234689999999999


Q ss_pred             CCCCCchhhhHHHHhhcccCCccceecchhhccCccchhhH
Q psy13568        119 LVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus       119 L~~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      +.+..+   .+......+..+.+++.+||++|.|+++..+.
T Consensus       129 l~~~~~---~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~  166 (185)
T d1lnza2         129 MPEAAE---NLEAFKEKLTDDYPVFPISAVTREGLRELLFE  166 (185)
T ss_dssp             STTHHH---HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHH
T ss_pred             hHhHHH---HHHHHHHHhccCCcEEEEECCCCCCHHHHHHH
Confidence            964322   23333444556789999999999999996444

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=4e-09  Score=94.72  Aligned_cols=75  Identities=12%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCchhcchhhcccccccc----ccCccEEEEEEeCC-CcchHHHHHHHHHHHHHH-Hc-cCCCCeEEEEEeC
Q psy13568         44 LVLNLWDCGGQEAFMENYFTSQRDNI----FRNVAVLIYVFDVE-SRELDRDLHYYQSCLEAM-LH-NSPDSKVFCLIHK  116 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~y~~sl~~~y----yr~adg~ILVFDVt-d~eSFe~I~~w~~~L~el-k~-~sp~iPIILVGNK  116 (485)
                      ..+.+|||+|++.+     ...+..+    ...++++++++|.. +..+++++..|...+... .. ...+.|+++|+||
T Consensus        46 ~~~~l~D~~g~~~~-----~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK  120 (209)
T d1nrjb_          46 SGVTLVDFPGHVKL-----RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK  120 (209)
T ss_dssp             SSCEEEECCCCGGG-----THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred             eEEEEEecccccch-----hhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence            45789999999987     4444433    34557888888866 567788887765433222 22 3468999999999


Q ss_pred             CCCCCCC
Q psy13568        117 IDLVHEN  123 (485)
Q Consensus       117 ~DL~~e~  123 (485)
                      +|+.+..
T Consensus       121 ~D~~~~~  127 (209)
T d1nrjb_         121 SELFTAR  127 (209)
T ss_dssp             TTSTTCC
T ss_pred             ecccccC
Confidence            9996543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=7.6e-08  Score=84.57  Aligned_cols=112  Identities=10%  Similarity=0.027  Sum_probs=63.8

Q ss_pred             EEEEeCCCch-----------hcchhhccccccccccCccEEEEEEeCCCcchHHHHHHH-------HHHHHHHHccCCC
Q psy13568         46 LNLWDCGGQE-----------AFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYY-------QSCLEAMLHNSPD  107 (485)
Q Consensus        46 LqIWDTaGQE-----------~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w-------~~~L~elk~~sp~  107 (485)
                      ++||||||-.           .+ ...+........+.+|++++|+|.+.+........+       .+.++.+.+  .+
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~  121 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERI-KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LD  121 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHH-HHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TT
T ss_pred             ceecccCCceecccccccccccc-chhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cC
Confidence            5789999941           11 001112233456789999999998765433222111       011222222  36


Q ss_pred             CeEEEEEeCCCCCCCCchhh-hHHHHhhcccC--CccceecchhhccCccchhhHH
Q psy13568        108 SKVFCLIHKIDLVHENQRDV-AWSSIVYQLIP--NVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       108 iPIILVGNK~DL~~e~~RqV-a~Akivq~LIp--ni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      .|+++|+||+|+.++.+... .+.+.++....  ...++++||+++.|+++..+.+
T Consensus       122 ~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i  177 (184)
T d2cxxa1         122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI  177 (184)
T ss_dssp             CCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred             CCEEEEEeeeehhhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHH
Confidence            89999999999864333222 23333321111  2347889999999999965554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.42  E-value=2.2e-07  Score=83.84  Aligned_cols=108  Identities=13%  Similarity=0.014  Sum_probs=69.2

Q ss_pred             EEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCC
Q psy13568         44 LVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHEN  123 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~  123 (485)
                      .++.+.||||++.|     ......-...+|++|+|.|..+.-..+...+-...+..+    ...+++++.||+|+.++.
T Consensus        78 ~~~~~iDtPGh~~f-----~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~----~~~~iiv~inK~D~~d~~  148 (195)
T d1kk1a3          78 RRVSFIDAPGHEAL-----MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----GQKNIIIAQNKIELVDKE  148 (195)
T ss_dssp             EEEEEEECSSHHHH-----HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCHH
T ss_pred             eeEeeeccchhhhh-----hHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh----cCccceeeeecccchhhH
Confidence            46899999999999     444545567899999999998753222222111222221    223578889999997543


Q ss_pred             chhh---hHHHHhhcc-cCCccceecchhhccCccchhhHH
Q psy13568        124 QRDV---AWSSIVYQL-IPNVKELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       124 ~RqV---a~Akivq~L-Ipni~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      +...   ...+.+... ..+++++..||++|.|+++..|.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I  189 (195)
T d1kk1a3         149 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAI  189 (195)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence            3222   223333222 235789999999999999865554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.35  E-value=3.6e-07  Score=83.29  Aligned_cols=105  Identities=12%  Similarity=0.008  Sum_probs=67.3

Q ss_pred             EEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHH-HHHHHHHHHHHccCCCCeEEEEEeCCCCCCCC
Q psy13568         45 VLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDL-HYYQSCLEAMLHNSPDSKVFCLIHKIDLVHEN  123 (485)
Q Consensus        45 kLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I-~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~  123 (485)
                      .++|.||+|++.|     ......-...+|++|+|.|..+.-..... +.| ..+.   . ..-.|+||+.||+||.+..
T Consensus        87 ~~~iiD~PGH~df-----~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~-~~~~---~-~~i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3          87 RISFIDAPGHEVL-----MATMLSGAALMDGAILVVAANEPFPQPQTREHF-VALG---I-IGVKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             EEEEEECSCHHHH-----HHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHH-HHHH---H-TTCCCEEEEEECGGGSCHH
T ss_pred             EEEEeccchHHHH-----HhhhhcceeccccccccccccccccchhHHHHH-HHHH---H-cCCceeeeccccCCCccch
Confidence            5899999999999     44444456789999999998875211111 122 1122   1 2224789999999997543


Q ss_pred             chhh---hHHHHhhcc-cCCccceecchhhccCccchhhH
Q psy13568        124 QRDV---AWSSIVYQL-IPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus       124 ~RqV---a~Akivq~L-Ipni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      +...   ...+.+... ..+++++..||++|.|+++..|.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~  196 (205)
T d2qn6a3         157 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG  196 (205)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHH
Confidence            3322   222222222 23578999999999999986554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.18  E-value=2.8e-06  Score=77.84  Aligned_cols=111  Identities=11%  Similarity=0.071  Sum_probs=68.5

Q ss_pred             EEEccEEEEEe-ccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCe
Q psy13568         31 LEVEHSHVRFL-GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSK  109 (485)
Q Consensus        31 I~Vd~~~V~~~-gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iP  109 (485)
                      ++++...+.+. .+..+++.||+|.+.|     ......-.+.+|++|+|.|..+.-.-+..+.|. .+.+    ...-|
T Consensus        52 iTi~~~~~~~~~~~~~~~~iDtPGh~~f-----~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~-~a~~----~~~~~  121 (196)
T d1d2ea3          52 ITINAAHVEYSTAARHYAHTDCPGHADY-----VKNMITGTAPLDGCILVVAANDGPMPQTREHLL-LARQ----IGVEH  121 (196)
T ss_dssp             EEEECEEEEEECSSCEEEEEECSSHHHH-----HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCC
T ss_pred             ccCCcceEEEEeceeeEEeecCcchHHH-----HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHH-HHHH----hcCCc
Confidence            44444444442 3467899999999999     333344467899999999999764444333332 1221    23357


Q ss_pred             EEEEEeCCCCCCCCchhh----hHHHHhhc---ccCCccceecchhhcc
Q psy13568        110 VFCLIHKIDLVHENQRDV----AWSSIVYQ---LIPNVKELEQSLHLFA  151 (485)
Q Consensus       110 IILVGNK~DL~~e~~RqV----a~Akivq~---LIpni~y~EtSAkt~~  151 (485)
                      +|++.||+|+.+++++..    +..+.+..   ...+++++..|+++|.
T Consensus       122 iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~  170 (196)
T d1d2ea3         122 VVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCAL  170 (196)
T ss_dssp             EEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred             EEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccc
Confidence            899999999975444322    22222211   1124678899999884

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=3.1e-06  Score=75.35  Aligned_cols=86  Identities=10%  Similarity=0.072  Sum_probs=57.0

Q ss_pred             ccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcccCCcccee
Q psy13568         68 NIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQLIPNVKELE  144 (485)
Q Consensus        68 ~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~LIpni~y~E  144 (485)
                      ..+..+++++++.|.+.+..-+.. ++.+++..     .+.|+++|+||+|+.++.+.+.   ...+.+ ..-++.+++.
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~~-~~~~~l~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l-~~~~~~~~~~  173 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDDV-QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTL-NIDPEDELIL  173 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-TCCTTSEEEE
T ss_pred             ccccchhhhhhhhhcccccccccc-cccccccc-----ccCcceechhhccccCHHHHHHHHHHHHHHh-cccCCCCEEE
Confidence            345678999999999876443333 33344443     3578999999999865443322   122222 2346778999


Q ss_pred             cchhhccCccchhhHH
Q psy13568        145 QSLHLFATLMDGDEVL  160 (485)
Q Consensus       145 tSAkt~~nV~ea~Ev~  160 (485)
                      +||+++.|+++..+.+
T Consensus       174 ~SA~~~~gi~el~~~i  189 (195)
T d1svia_         174 FSSETKKGKDEAWGAI  189 (195)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHH
Confidence            9999999999975553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=3.1e-06  Score=77.62  Aligned_cols=70  Identities=11%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCe-EEEEEeCCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSK-VFCLIHKIDLVH  121 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iP-IILVGNK~DL~~  121 (485)
                      +.+++|.||||.+.|     ..-...-.+.+|++|+|.|..+.-..+..+.|. .+..     -++| ++++.||+|+.+
T Consensus        66 ~~~i~iiDtPGh~df-----~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~-----~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          66 KRHYSHVDCPGHADY-----IKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ-----VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             SCEEEEEECCCSGGG-----HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH-----TTCCCEEEEEECGGGCC
T ss_pred             CeEEEEEeCCCchhh-----HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCeEEEEEEecccCC
Confidence            456899999999999     333334467899999999999877766666553 2222     2565 677899999965


Q ss_pred             CC
Q psy13568        122 EN  123 (485)
Q Consensus       122 e~  123 (485)
                      +.
T Consensus       135 ~~  136 (204)
T d2c78a3         135 DP  136 (204)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.96  E-value=1.4e-05  Score=74.39  Aligned_cols=102  Identities=13%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCe-EEEEEeCCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSK-VFCLIHKIDLVH  121 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iP-IILVGNK~DL~~  121 (485)
                      +-++.|.||||.+.|     -.....-...+|++|+|.|..+.-.-+..+.|. .+.     ..++| +|++.||+|+.+
T Consensus        88 ~~~~~iiD~PGH~df-----v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~-----~~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          88 KRKFIIADTPGHEQY-----TRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IAS-----LLGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             SEEEEEEECCCSGGG-----HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHH-----HTTCCEEEEEEECTTTTT
T ss_pred             ceEEEEEeccchhhh-----hhhhccccccCceEEEEeccccCcccchHHHHH-HHH-----HcCCCEEEEEEEcccccc
Confidence            456899999999999     333333467899999999998765444433331 111     12454 788899999976


Q ss_pred             CCchhh-----hHHHHhhccc---CCccceecchhhccCccc
Q psy13568        122 ENQRDV-----AWSSIVYQLI---PNVKELEQSLHLFATLMD  155 (485)
Q Consensus       122 e~~RqV-----a~Akivq~LI---pni~y~EtSAkt~~nV~e  155 (485)
                      .++...     ++.+.++++.   .+++++.+||.+|.|+.+
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            443222     2222222221   246789999999999966

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.5e-05  Score=67.65  Aligned_cols=110  Identities=12%  Similarity=0.051  Sum_probs=65.9

Q ss_pred             cEEEEEEeCCCchhcch----hhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCC
Q psy13568         43 NLVLNLWDCGGQEAFME----NYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKID  118 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~----~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~D  118 (485)
                      ...+..||++|......    .+...........+++++++.|..+...  ....+...+   .  ....|+++|+||.|
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l---~--~~~~~~i~v~~k~d  124 (179)
T d1egaa1          52 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP--DDEMVLNKL---R--EGKAPVILAVNKVD  124 (179)
T ss_dssp             TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH--HHHHHHHHH---H--SSSSCEEEEEESTT
T ss_pred             CceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccch--hHHHHHHHh---h--hccCceeeeeeeee
Confidence            34467789888543200    1112233444567888888988775432  222222222   2  24567899999999


Q ss_pred             CCCCCchhhhHHHHhhcccCCccceecchhhccCccchhhH
Q psy13568        119 LVHENQRDVAWSSIVYQLIPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus       119 L~~e~~RqVa~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      +..+........+.+....+..+++++||++|.|+++..+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~  165 (179)
T d1egaa1         125 NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAI  165 (179)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHH
T ss_pred             ccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHH
Confidence            86543222233344444456778999999999999985444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.86  E-value=6.4e-06  Score=76.20  Aligned_cols=108  Identities=9%  Similarity=0.052  Sum_probs=66.0

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHH---HHHHHHHHHHccCCCCeEEEEEeCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLH---YYQSCLEAMLHNSPDSKVFCLIHKIDL  119 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~---~w~~~L~elk~~sp~iPIILVGNK~DL  119 (485)
                      +..++|.||||.+.|     ......-.+-+|+.|+|.|..+-..-+...   +-.+.+...+ .....++|++.||+|+
T Consensus        80 ~~~i~iiDtPGH~df-----~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~~~~iIv~iNK~D~  153 (224)
T d1jnya3          80 KYFFTIIDAPGHRDF-----VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGLDQLIVAVNKMDL  153 (224)
T ss_dssp             SCEEEECCCSSSTTH-----HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTCTTCEEEEECGGG
T ss_pred             CceeEEeeCCCcHHH-----HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhCCCceEEEEEcccC
Confidence            456899999999999     555555577899999999998742111100   1111111111 1223467888999999


Q ss_pred             CCCCchhh----------hHHHHhhcccCCccceecchhhccCccch
Q psy13568        120 VHENQRDV----------AWSSIVYQLIPNVKELEQSLHLFATLMDG  156 (485)
Q Consensus       120 ~~e~~RqV----------a~Akivq~LIpni~y~EtSAkt~~nV~ea  156 (485)
                      ...+..+.          .+...+..-..+++++..||..|.|+.+.
T Consensus       154 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~  200 (224)
T d1jnya3         154 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  200 (224)
T ss_dssp             SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             CCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccc
Confidence            64332221          22222222234567889999999998764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.71  E-value=4.4e-05  Score=71.81  Aligned_cols=100  Identities=13%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCc----------chHHHHHHHHHHHHHHHccCCCC-eEE
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESR----------ELDRDLHYYQSCLEAMLHNSPDS-KVF  111 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~----------eSFe~I~~w~~~L~elk~~sp~i-PII  111 (485)
                      +..+.+.||||.+.|     ......-...+|++|+|.|..+.          ++-+.+.       .+.  ..++ +++
T Consensus       101 ~~~i~~iDtPGH~df-----~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-------l~~--~~~i~~ii  166 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGY-----VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-------LAR--TQGINHLV  166 (245)
T ss_dssp             SEEEEECCCCC----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-------HHH--HTTCSSEE
T ss_pred             cceeeeecccccccc-----hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHH-------HHH--HcCCCeEE
Confidence            356899999999999     44444456789999999999863          2222221       111  1234 478


Q ss_pred             EEEeCCCCCCCCchhh-------hHHHHhhccc-----CCccceecchhhccCccch
Q psy13568        112 CLIHKIDLVHENQRDV-------AWSSIVYQLI-----PNVKELEQSLHLFATLMDG  156 (485)
Q Consensus       112 LVGNK~DL~~e~~RqV-------a~Akivq~LI-----pni~y~EtSAkt~~nV~ea  156 (485)
                      ++.||+|+...+..+.       .+.+.+.++.     .+++++.+||++|.|+.+.
T Consensus       167 v~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         167 VVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             EEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             EEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence            8899999975332221       2222222221     1367899999999999874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=3.6e-05  Score=72.28  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=64.3

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcch-------HHHHHHHHHHHHHHHccCCCCe-EEEEE
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESREL-------DRDLHYYQSCLEAMLHNSPDSK-VFCLI  114 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eS-------Fe~I~~w~~~L~elk~~sp~iP-IILVG  114 (485)
                      +.+++|.||||.+.|     ......-...+|++|+|.|.+....       -+-.+.|. .+.     .-++| +|++.
T Consensus        83 ~~~i~iiDtPGH~df-----~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~-----~~gv~~iiv~i  151 (239)
T d1f60a3          83 KYQVTVIDAPGHRDF-----IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAF-----TLGVRQLIVAV  151 (239)
T ss_dssp             SEEEEEEECCCCTTH-----HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHH-----HTTCCEEEEEE
T ss_pred             CEEEEEEECCCcHHH-----HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHH-----HcCCCeEEEEE
Confidence            457999999999999     4444455778999999999875311       01222231 111     12454 78899


Q ss_pred             eCCCCCCCCchhh-----hHHHHhhcc---cCCccceecchhhccCccc
Q psy13568        115 HKIDLVHENQRDV-----AWSSIVYQL---IPNVKELEQSLHLFATLMD  155 (485)
Q Consensus       115 NK~DL~~e~~RqV-----a~Akivq~L---Ipni~y~EtSAkt~~nV~e  155 (485)
                      ||+|+.+.++...     ++.+.+...   ...++++..|+..|.|+.+
T Consensus       152 NKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         152 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            9999975443211     222222221   1246788999999999866

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=7.9e-05  Score=63.98  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             cCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcccCCccceecch
Q psy13568         71 RNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQLIPNVKELEQSL  147 (485)
Q Consensus        71 r~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~LIpni~y~EtSA  147 (485)
                      .....++.+.|...........    ++..+..  ...++++++||+|+....+...   .+.+.+....++.+.+.+||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA  170 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDLDQQ----MIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS  170 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHH----HHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred             hheeEEEEeecccccchhHHHH----HHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence            3455666666666554444332    2233222  3578899999999875433332   55666666667788999999


Q ss_pred             hhccCccchhhH
Q psy13568        148 HLFATLMDGDEV  159 (485)
Q Consensus       148 kt~~nV~ea~Ev  159 (485)
                      ++|.|++++.+.
T Consensus       171 ~~g~Gid~L~~~  182 (188)
T d1puia_         171 LKKQGVDKLRQK  182 (188)
T ss_dssp             TTTBSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            999999996544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00014  Score=71.81  Aligned_cols=66  Identities=21%  Similarity=0.254  Sum_probs=51.8

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL  119 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL  119 (485)
                      ...++|.||||...|     ..-...-++-+|++|+|.|..+.-..+..+-|...+      ..++|++++.||+|.
T Consensus        95 ~~~inliDtPGh~dF-----~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~------~~~~p~i~viNKiDr  160 (341)
T d1n0ua2          95 SFLINLIDSPGHVDF-----SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL------GERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEEECCCCCCSS-----CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH------HTTCEEEEEEECHHH
T ss_pred             ceEEEEEcCCCcHHH-----HHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH------HcCCCeEEEEECccc
Confidence            367999999999999     555555677899999999999876666665554322      246899999999996

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=0.00026  Score=67.99  Aligned_cols=71  Identities=18%  Similarity=0.225  Sum_probs=54.7

Q ss_pred             ccEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCC
Q psy13568         42 GNLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVH  121 (485)
Q Consensus        42 gnVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~  121 (485)
                      ++.+++|.||||...|     ..-...-++-+|+.|+|.|..+.-.-+..+-|.. ..     ..++|.+++.||+|...
T Consensus        69 ~~~~~n~iDtPG~~dF-----~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~-----~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          69 KDHRINIIDAPGHVDF-----TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AE-----KYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             TTEEEEEECCCSSSSC-----STTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HH-----TTTCCEEEEEECTTSTT
T ss_pred             CCeEEEEecCCchhhh-----HHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HH-----HcCCCEEEEEecccccc
Confidence            3467999999999999     5555566788999999999998766565566632 22     24799999999999865


Q ss_pred             CC
Q psy13568        122 EN  123 (485)
Q Consensus       122 e~  123 (485)
                      .+
T Consensus       138 ad  139 (276)
T d2bv3a2         138 AD  139 (276)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.09  E-value=0.00026  Score=67.61  Aligned_cols=67  Identities=12%  Similarity=0.090  Sum_probs=51.7

Q ss_pred             cEEEEEEeCCCchhcchhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCC
Q psy13568         43 NLVLNLWDCGGQEAFMENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLV  120 (485)
Q Consensus        43 nVkLqIWDTaGQE~f~~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~  120 (485)
                      +.+++|+||||..+|     ..-...-++-+|++|+|.|..+.-.-+..+.|. .+.+     .++|.+++.||+|..
T Consensus        66 ~~~~n~iDtPGh~dF-----~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~-----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          66 GHRVFLLDAPGYGDF-----VGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER-----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             TEEEEEEECCCSGGG-----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCEEEEEECGGGC
T ss_pred             ccceeEEccCchhhh-----hhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh-----ccccccccccccccc
Confidence            356899999999999     555555677899999999999876666666663 2222     368999999999963

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.0015  Score=61.06  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             ccCccEEEEEEeCCCcc-hHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcccCCccceec
Q psy13568         70 FRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQLIPNVKELEQ  145 (485)
Q Consensus        70 yr~adg~ILVFDVtd~e-SFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~LIpni~y~Et  145 (485)
                      ..+.|.+++|+++.+|+ +...|+.|+-..     ...+++.+||.||+||.++.+.+.   .|.+....+  +.+.+.+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a-----~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~--g~~v~~~   80 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLV-----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI--GYDVYLT   80 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHH-----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH--TCCEEEC
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHH-----HHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhc--cccceee
Confidence            46899999999998775 566666654221     245889999999999975433222   344443333  7899999


Q ss_pred             chhhccCccchhhHH
Q psy13568        146 SLHLFATLMDGDEVL  160 (485)
Q Consensus       146 SAkt~~nV~ea~Ev~  160 (485)
                      |++++.++++..+.+
T Consensus        81 Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          81 SSKDQDSLADIIPHF   95 (231)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCChhHHHHHHHhh
Confidence            999999999876654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.75  E-value=0.00071  Score=60.61  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCchhcchhhcccccccc--ccCccEEEEEEeCCC---cchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCC
Q psy13568         44 LVLNLWDCGGQEAFMENYFTSQRDNI--FRNVAVLIYVFDVES---RELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKID  118 (485)
Q Consensus        44 VkLqIWDTaGQE~f~~~y~~sl~~~y--yr~adg~ILVFDVtd---~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~D  118 (485)
                      ..+.+.|++|+..+.....  .....  ....++++++.|...   +..+.........+.    ..-..|.++|.||+|
T Consensus        95 ~~~~~id~~g~~~~~~~~~--~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHE--FGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID----LRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSH--HHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH----HHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHHHHHH--HHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH----HHhCCCceeeeeccc
Confidence            3478899999987621000  01111  123567889998753   333332221111111    112688999999999


Q ss_pred             CCCCCchhh---------------------------hHHHHhhcccCCccceecchhhccCccchhhH
Q psy13568        119 LVHENQRDV---------------------------AWSSIVYQLIPNVKELEQSLHLFATLMDGDEV  159 (485)
Q Consensus       119 L~~e~~RqV---------------------------a~Akivq~LIpni~y~EtSAkt~~nV~ea~Ev  159 (485)
                      +..+++...                           .....++...+.++++.+||+++.|+++....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~  236 (244)
T d1yrba1         169 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL  236 (244)
T ss_dssp             GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHH
Confidence            976433211                           12222334456788999999999999986543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.0019  Score=60.15  Aligned_cols=85  Identities=18%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             ccCccEEEEEEeCCCcc-hHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhhhHHHHhhcccCCccceecchh
Q psy13568         70 FRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQSLH  148 (485)
Q Consensus        70 yr~adg~ILVFDVtd~e-SFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqVa~Akivq~LIpni~y~EtSAk  148 (485)
                      ..+.|.+++|+++.+|+ +..-++.|+-...     ..++|.+||.||+||.++++.+ .|.+......+..+.+.+|++
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~-----~~~i~pvIvlnK~DL~~~~~~~-~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAE-----KNELETVMVINKMDLYDEDDLR-KVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHH-----HTTCEEEEEECCGGGCCHHHHH-HHHHHHHHHTTTSCEEECCTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHH-----HcCCCEEEEEeCcccCCHHHHH-HHHHhhcccccceeEEEeccc
Confidence            47899999999998865 5566666643222     3479999999999996533221 333333322335678999999


Q ss_pred             hccCccchhhHH
Q psy13568        149 LFATLMDGDEVL  160 (485)
Q Consensus       149 t~~nV~ea~Ev~  160 (485)
                      ++.++++..+.+
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999876654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.31  E-value=0.0095  Score=55.79  Aligned_cols=83  Identities=11%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             cccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhhhHHHHhhcccCCccceecc
Q psy13568         67 DNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDVAWSSIVYQLIPNVKELEQS  146 (485)
Q Consensus        67 ~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqVa~Akivq~LIpni~y~EtS  146 (485)
                      ...++.+|++|.|.|.-+|-+..+-.     +.++   ..+-|+++|.||+||.+.. ...+|.+.++..  +...+..+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~~-----l~~~---~~~Kp~IlVlNK~DLv~~~-~~~~w~~~f~~~--~~~~i~is   78 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNPM-----IEDI---LKNKPRIMLLNKADKADAA-VTQQWKEHFENQ--GIRSLSIN   78 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCHH-----HHHH---CSSSCEEEEEECGGGSCHH-HHHHHHHHHHTT--TCCEEECC
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCHH-----HHHH---HcCCCeEEEEECccCCchH-HHHHHHHHHHhc--CCccceee
Confidence            34578899999999998887655421     2222   1256899999999996432 222787777544  56788899


Q ss_pred             hhhccCccchhhHH
Q psy13568        147 LHLFATLMDGDEVL  160 (485)
Q Consensus       147 Akt~~nV~ea~Ev~  160 (485)
                      ++.+.+..+..+.+
T Consensus        79 a~~~~~~~~~~~~~   92 (273)
T d1puja_          79 SVNGQGLNQIVPAS   92 (273)
T ss_dssp             TTTCTTGGGHHHHH
T ss_pred             cccCCCccccchhh
Confidence            99998888765544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.68  E-value=0.025  Score=52.40  Aligned_cols=77  Identities=13%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             EEEEEEeCCCchhc--chhhcccccc--ccccCccEEEEEEeCCCcc-hHHHHHHHHHHHHHHHccCCC--CeEEEEEeC
Q psy13568         44 LVLNLWDCGGQEAF--MENYFTSQRD--NIFRNVAVLIYVFDVESRE-LDRDLHYYQSCLEAMLHNSPD--SKVFCLIHK  116 (485)
Q Consensus        44 VkLqIWDTaGQE~f--~~~y~~sl~~--~yyr~adg~ILVFDVtd~e-SFe~I~~w~~~L~elk~~sp~--iPIILVGNK  116 (485)
                      ..+.+|||||-..-  .+........  ....+.+++++|.+++... +.++.. ..+.+.++-  +++  -+++||.||
T Consensus        80 ~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~-~l~~l~~~f--g~~~~~~~ivv~t~  156 (257)
T d1h65a_          80 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL-VAKAITDSF--GKGIWNKAIVALTH  156 (257)
T ss_dssp             EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHH-HHHHHHHHH--CGGGGGGEEEEEEC
T ss_pred             EEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHH-HHHHHHHHc--chhhhhCEEEEEEC
Confidence            45889999995321  0000001111  1224578899999887643 222222 223334332  222  368999999


Q ss_pred             CCCCCCC
Q psy13568        117 IDLVHEN  123 (485)
Q Consensus       117 ~DL~~e~  123 (485)
                      .|+..++
T Consensus       157 ~D~~~~~  163 (257)
T d1h65a_         157 AQFSPPD  163 (257)
T ss_dssp             CSCCCGG
T ss_pred             cccCCcC
Confidence            9986543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.012  Score=58.42  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=38.6

Q ss_pred             EEEEEeCCCchhcc---hhhccccccccccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCC
Q psy13568         45 VLNLWDCGGQEAFM---ENYFTSQRDNIFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDL  119 (485)
Q Consensus        45 kLqIWDTaGQE~f~---~~y~~sl~~~yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL  119 (485)
                      .+.||||||-....   +.|   +...-+..+|.+|++.|..-  +-++++ +.+++.+     .+.|+++|.||+|.
T Consensus       108 ~~~l~DtPG~~~~~~~~~~~---~~~~~~~~~d~~l~~~~~~~--~~~d~~-l~~~l~~-----~~k~~~~V~nK~D~  174 (400)
T d1tq4a_         108 NVVFWDLPGIGSTNFPPDTY---LEKMKFYEYDFFIIISATRF--KKNDID-IAKAISM-----MKKEFYFVRTKVDS  174 (400)
T ss_dssp             TEEEEECCCGGGSSCCHHHH---HHHTTGGGCSEEEEEESSCC--CHHHHH-HHHHHHH-----TTCEEEEEECCHHH
T ss_pred             eEEEEeCCCcccccccHHHH---HHHhhhhcceEEEEecCCCC--CHHHHH-HHHHHHH-----cCCCEEEEEeCccc
Confidence            36799999965431   111   22333567888888876432  333332 2233332     36899999999996

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.62  E-value=0.38  Score=44.14  Aligned_cols=74  Identities=20%  Similarity=0.180  Sum_probs=42.5

Q ss_pred             EEEEEeCCCchhc--------chhhccccccccccCccEEE-EEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEe
Q psy13568         45 VLNLWDCGGQEAF--------MENYFTSQRDNIFRNVAVLI-YVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIH  115 (485)
Q Consensus        45 kLqIWDTaGQE~f--------~~~y~~sl~~~yyr~adg~I-LVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGN  115 (485)
                      .+.|+|+||-..-        .......+...|....+.+| +|.+.+..-+-+.+..|.   +++.  ...-++++|.|
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~---~~~~--~~~~r~i~Vlt  200 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA---KEVD--PQGQRTIGVIT  200 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH---HHHC--TTCSSEEEEEE
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH---HHhC--cCCCceeeEEe
Confidence            4789999995321        00111244556667777554 566665554444444443   3321  22357899999


Q ss_pred             CCCCCCCC
Q psy13568        116 KIDLVHEN  123 (485)
Q Consensus       116 K~DL~~e~  123 (485)
                      |+|+..+.
T Consensus       201 k~D~~~~~  208 (299)
T d2akab1         201 KLDLMDEG  208 (299)
T ss_dssp             CGGGSCTT
T ss_pred             ccccccch
Confidence            99987543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.17  E-value=0.32  Score=45.06  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=42.6

Q ss_pred             EEEEEEeCCCchhc--------chhhccccccccccCccEEEEEEe-CCCcchHHHHHHHHHHHHHHHccCCCCeEEEEE
Q psy13568         44 LVLNLWDCGGQEAF--------MENYFTSQRDNIFRNVAVLIYVFD-VESRELDRDLHYYQSCLEAMLHNSPDSKVFCLI  114 (485)
Q Consensus        44 VkLqIWDTaGQE~f--------~~~y~~sl~~~yyr~adg~ILVFD-Vtd~eSFe~I~~w~~~L~elk~~sp~iPIILVG  114 (485)
                      ..+.|+||||-...        .......+...|..+++.+|+++. ....-.-+....|   ++++.  ....++++|.
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~---~~~~~--~~~~r~i~Vi  205 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL---AKEVD--PEGKRTIGVI  205 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH---HHHHC--SSCSSEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHH---HHHhC--cCCCeEEEEE
Confidence            45889999995321        001113466778889998887763 2222111222223   33332  2345899999


Q ss_pred             eCCCCCCCC
Q psy13568        115 HKIDLVHEN  123 (485)
Q Consensus       115 NK~DL~~e~  123 (485)
                      ||+|+..+.
T Consensus       206 tk~D~~~~~  214 (306)
T d1jwyb_         206 TKLDLMDKG  214 (306)
T ss_dssp             ECTTSSCSS
T ss_pred             eccccccch
Confidence            999986543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.00  E-value=0.23  Score=47.63  Aligned_cols=81  Identities=7%  Similarity=-0.099  Sum_probs=47.8

Q ss_pred             ccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh----hHHHHhhccc-----CCc
Q psy13568         70 FRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV----AWSSIVYQLI-----PNV  140 (485)
Q Consensus        70 yr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV----a~Akivq~LI-----pni  140 (485)
                      ...+|.+|+|.+....+..+.++   .-+-       +++=++|.||+|+.+..+...    .+...+..+.     +..
T Consensus       162 ~~~~D~~v~v~~p~~GD~iQ~~k---~gil-------E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  231 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGDELQGIK---KGIF-------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTP  231 (323)
T ss_dssp             HTTSSEEEEEECSCC------CC---TTHH-------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCC
T ss_pred             hcccceEEEEeeccchhhhhhhh---hhHh-------hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCC
Confidence            45589999999887664433222   1111       233478889999864332211    2222222121     356


Q ss_pred             cceecchhhccCccchhhHH
Q psy13568        141 KELEQSLHLFATLMDGDEVL  160 (485)
Q Consensus       141 ~y~EtSAkt~~nV~ea~Ev~  160 (485)
                      +.+.+||+++.|+++..+.+
T Consensus       232 ~V~~~Sa~~g~Gi~el~~~I  251 (323)
T d2qm8a1         232 PVVTISGLHGKGLDSLWSRI  251 (323)
T ss_dssp             CEEEEBTTTTBSHHHHHHHH
T ss_pred             ceEEEEecCCCCHHHHHHHH
Confidence            89999999999999987766

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=81.69  E-value=0.31  Score=46.79  Aligned_cols=83  Identities=16%  Similarity=0.020  Sum_probs=46.3

Q ss_pred             cccCccEEEEEEeCCCcchHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCCCCCCchhh---hHHHHhhcc-----cCCc
Q psy13568         69 IFRNVAVLIYVFDVESRELDRDLHYYQSCLEAMLHNSPDSKVFCLIHKIDLVHENQRDV---AWSSIVYQL-----IPNV  140 (485)
Q Consensus        69 yyr~adg~ILVFDVtd~eSFe~I~~w~~~L~elk~~sp~iPIILVGNK~DL~~e~~RqV---a~Akivq~L-----Ipni  140 (485)
                      +...+|.+++|.+..   .-++++....-+-++       +=++|.||+|+.+...-..   ++...+..+     .+..
T Consensus       164 i~~~aD~~l~v~~P~---~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p  233 (327)
T d2p67a1         164 VARMVDCFISLQIAG---GGDDLQGIKKGLMEV-------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQP  233 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHHH-------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCC
T ss_pred             hhhccceEEEEecCC---Cchhhhhhchhhhcc-------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcc
Confidence            456789999997654   444444222223332       2267789999964322111   222222211     1235


Q ss_pred             cceecchhhccCccchhhHHH
Q psy13568        141 KELEQSLHLFATLMDGDEVLL  161 (485)
Q Consensus       141 ~y~EtSAkt~~nV~ea~Ev~L  161 (485)
                      +.+.+||.++.|+++..+.+.
T Consensus       234 ~V~~~SA~~g~Gi~eL~~~I~  254 (327)
T d2p67a1         234 RVLTCSALEKRGIDEIWHAII  254 (327)
T ss_dssp             EEEECBGGGTBSHHHHHHHHH
T ss_pred             eeEEEEeeCCCCHHHHHHHHH
Confidence            799999999999999777653