Psyllid ID: psy1374

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN
cccccccccccccccccccEEEEEEccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHcccccccEEEEEEEEEEccccccccEEEEEccccEEEEEEccEEEEEEEEEcccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEcccccEEEcccccccccccEEEEccHHHHHHHHHHHHHHccHHHHHHccccccc
cccccHHHccHHHcccccEEEEEEEccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEccEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEcccHHHHHHHHHHHHHcccHHHHHccccccc
mstqaltildpalvrpgrvdlKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMItleipcrdksyHWLLHWITVRgakktqhlsVETSFEkfdtgyvktkydfipsigthLFSYQGNWIRversresttldiqqgipwetvtltafgrdrSLFFNILEEARTLALKQYEGKTVMYTAlgsewrpfghpkrrrplnsvvldsgvaDRILADIRQFVadpawyldrgkqnrn
mstqaltildpalvrpgrvDLKEYIGFCSRHQLEQMYKRFYQDVDNaskfadqakkkknfrrkkkkktkkkkkkkktkkknrrhymitleipcrdksYHWLLHWITVRgakktqhlSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESttldiqqgipwetvTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGsewrpfghpkrrrplNSVVLDSGVADRILADIRQFvadpawyldrgkqnrn
MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAkkkknfrrkkkkktkkkkkkkktkkknrrHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN
*****LTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDV***************************************HYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLD*******
*STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNAS**********************KKKKKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGAKKT*HLSV**SFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVER**************WETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNR*
MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFAD*****************************RRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN
**TQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKK*KTKKKKKKKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query263 2.2.26 [Sep-21-2011]
Q5E9H5 419 Mitochondrial chaperone B yes N/A 0.669 0.420 0.655 9e-69
Q9Y276 419 Mitochondrial chaperone B yes N/A 0.669 0.420 0.649 1e-67
Q9CZP5 418 Mitochondrial chaperone B yes N/A 0.684 0.430 0.640 3e-67
Q7ZTL7 419 Mitochondrial chaperone B N/A N/A 0.669 0.420 0.587 2e-61
Q7ZV60 420 Mitochondrial chaperone B yes N/A 0.669 0.419 0.649 1e-58
Q54DY9 458 Probable mitochondrial ch yes N/A 0.711 0.408 0.430 1e-51
P32839 456 Mitochondrial chaperone B yes N/A 0.665 0.383 0.465 6e-43
Q9P6Q3 449 Probable mitochondrial ch yes N/A 0.673 0.394 0.370 8e-33
Q54HY8 421 Probable mitochondrial ch no N/A 0.631 0.394 0.325 3e-25
Q5UR45196 Putative AAA family ATPas N/A N/A 0.155 0.209 0.439 0.0001
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1 Back     alignment and function desciption
 Score =  260 bits (664), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 116/177 (65%), Positives = 145/177 (81%), Gaps = 1/177 (0%)

Query: 82  RRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIG 141
           RRHYMITLE+P RD+SY WLL W+T R + +TQHLSVET++ + ++G + TK++F+PS G
Sbjct: 44  RRHYMITLEVPARDRSYAWLLSWLT-RHSTRTQHLSVETTYLQHESGRISTKFEFVPSPG 102

Query: 142 THLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQY 201
            H   YQG WIRVERSRE   +D+Q G PWE+VT TA G DR +FFNILEEAR LAL+Q 
Sbjct: 103 NHFIWYQGKWIRVERSREMQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQE 162

Query: 202 EGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRG 258
           EGKTVMYTA+GSEWRPFG+P+RRRPLNSVVL+ GV +RI+ DIR+F+ +P WY+DRG
Sbjct: 163 EGKTVMYTAVGSEWRPFGYPRRRRPLNSVVLEQGVTERIVRDIREFIDNPKWYIDRG 219
Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.
Bos taurus (taxid: 9913)
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1 Back     alignment and function description
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1 Back     alignment and function description
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1 Back     alignment and function description
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2 Back     alignment and function description
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1 Back     alignment and function description
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1 Back     alignment and function description
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1 Back     alignment and function description
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L572 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
328786507 423 PREDICTED: mitochondrial chaperone BCS1- 0.653 0.406 0.734 1e-79
380017906 450 PREDICTED: mitochondrial chaperone BCS1- 0.653 0.382 0.734 1e-79
340720261 425 PREDICTED: mitochondrial chaperone BCS1- 0.669 0.414 0.728 6e-79
383862886 426 PREDICTED: mitochondrial chaperone BCS1- 0.650 0.401 0.740 7e-79
350423422 425 PREDICTED: mitochondrial chaperone BCS1- 0.669 0.414 0.728 8e-79
307198053 425 Mitochondrial chaperone BCS1 [Harpegnath 0.653 0.404 0.734 2e-78
332021509 425 Mitochondrial chaperone BCS1 [Acromyrmex 0.673 0.416 0.723 2e-77
312372442 424 hypothetical protein AND_20171 [Anophele 0.661 0.410 0.717 2e-76
157128433 424 mitochondrial chaperone bcs1 [Aedes aegy 0.661 0.410 0.723 2e-76
307183597 378 Mitochondrial chaperone BCS1 [Camponotus 0.653 0.455 0.717 3e-76
>gi|328786507|ref|XP_624632.2| PREDICTED: mitochondrial chaperone BCS1-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 130/177 (73%), Positives = 159/177 (89%)

Query: 82  RRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIG 141
           RRHYMITLE+PCRDKSY WLL WIT +GAK+TQHLSVETSFE+ +TG++KT+YDF+PSIG
Sbjct: 42  RRHYMITLEVPCRDKSYQWLLQWITHKGAKETQHLSVETSFEQKETGHIKTRYDFVPSIG 101

Query: 142 THLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQY 201
           TH   Y+GNWIRVER+RE  TLDIQ GIPWETV LTA GR+++++FNILEEAR +ALK+Y
Sbjct: 102 THFIRYKGNWIRVERTREQQTLDIQMGIPWETVQLTALGRNKNIYFNILEEARQMALKEY 161

Query: 202 EGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRG 258
           EGKT+MYTA+GSEWR FGHP+RRRPLNSVVLD+G+A+RI+ D R+F+ +P+WY DRG
Sbjct: 162 EGKTIMYTAMGSEWRQFGHPRRRRPLNSVVLDTGIAERIINDCREFIQNPSWYSDRG 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380017906|ref|XP_003692884.1| PREDICTED: mitochondrial chaperone BCS1-like [Apis florea] Back     alignment and taxonomy information
>gi|340720261|ref|XP_003398559.1| PREDICTED: mitochondrial chaperone BCS1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383862886|ref|XP_003706914.1| PREDICTED: mitochondrial chaperone BCS1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350423422|ref|XP_003493477.1| PREDICTED: mitochondrial chaperone BCS1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307198053|gb|EFN79106.1| Mitochondrial chaperone BCS1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332021509|gb|EGI61874.1| Mitochondrial chaperone BCS1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|312372442|gb|EFR20399.1| hypothetical protein AND_20171 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157128433|ref|XP_001655119.1| mitochondrial chaperone bcs1 [Aedes aegypti] gi|108872608|gb|EAT36833.1| AAEL011123-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|307183597|gb|EFN70329.1| Mitochondrial chaperone BCS1 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
FB|FBgn0032195 431 CG4908 [Drosophila melanogaste 0.665 0.406 0.674 1.3e-66
UNIPROTKB|I3LFK0 419 BCS1L "Uncharacterized protein 0.661 0.415 0.662 9.7e-64
UNIPROTKB|Q5E9H5 419 BCS1L "Mitochondrial chaperone 0.661 0.415 0.651 4.2e-63
UNIPROTKB|E2RE50 419 BCS1L "Uncharacterized protein 0.661 0.415 0.651 1.1e-62
UNIPROTKB|Q9Y276 419 BCS1L "Mitochondrial chaperone 0.661 0.415 0.645 1.8e-62
RGD|1359658 418 Bcs1l "BC1 (ubiquinol-cytochro 0.661 0.416 0.651 3.8e-62
MGI|MGI:1914071 418 Bcs1l "BCS1-like (yeast)" [Mus 0.661 0.416 0.645 7.9e-62
ZFIN|ZDB-GENE-040426-938 420 bcs1l "BCS1-like (yeast)" [Dan 0.661 0.414 0.645 2.7e-61
UNIPROTKB|E1BWG5 420 BCS1L "Uncharacterized protein 0.665 0.416 0.585 1.9e-58
UNIPROTKB|F1P1Q6 419 BCS1L "Uncharacterized protein 0.661 0.415 0.582 6.6e-58
FB|FBgn0032195 CG4908 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 118/175 (67%), Positives = 143/175 (81%)

Query:    84 HYMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSVETSFEKFDTGYVKTKYDFIPSIGTH 143
             H MITLE+PCRDKSY WLL WIT+RGA+KTQHLSVET+F + D G +KT YDFIPSIG H
Sbjct:    46 HCMITLEVPCRDKSYQWLLKWITIRGARKTQHLSVETNFVQNDNGTIKTSYDFIPSIGKH 105

Query:   144 LFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEG 203
             LF Y+GNWI+VER+RE  TLD+  G+PWETVTLTAFG ++ ++F+ILEEAR LAL+  EG
Sbjct:   106 LFQYKGNWIQVERTREQQTLDLHMGVPWETVTLTAFGNNKGIYFDILEEARQLALEATEG 165

Query:   204 KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRG 258
             KTV+YTA+G+EWRPFGHP+RRRP  SVVLD G + RI+AD + F+    WY  RG
Sbjct:   166 KTVLYTAMGAEWRPFGHPRRRRPTGSVVLDRGTSQRIIADCQDFIKSSLWYTQRG 220
GO:0006461 "protein complex assembly" evidence=ISS
GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0016887 "ATPase activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0034551 "mitochondrial respiratory chain complex III assembly" evidence=IEA
UNIPROTKB|I3LFK0 BCS1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9H5 BCS1L "Mitochondrial chaperone BCS1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE50 BCS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y276 BCS1L "Mitochondrial chaperone BCS1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359658 Bcs1l "BC1 (ubiquinol-cytochrome c reductase) synthesis-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914071 Bcs1l "BCS1-like (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-938 bcs1l "BCS1-like (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWG5 BCS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1Q6 BCS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9Y276BCS1_HUMANNo assigned EC number0.64970.66920.4200yesN/A
Q5E9H5BCS1_BOVINNo assigned EC number0.65530.66920.4200yesN/A
Q7ZV60BCS1_DANRENo assigned EC number0.64970.66920.4190yesN/A
Q9CZP5BCS1_MOUSENo assigned EC number0.64080.68440.4306yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
smart01024170 smart01024, BCS1_N, This domain is found at the N 3e-66
pfam08740179 pfam08740, BCS1_N, BCS1 N terminal 6e-48
COG0465 596 COG0465, HflB, ATP-dependent Zn proteases [Posttra 3e-06
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 0.002
>gnl|CDD|214980 smart01024, BCS1_N, This domain is found at the N terminal of the mitochondrial ATPase BSC1 Back     alignment and domain information 
 Score =  202 bits (517), Expect = 3e-66
 Identities = 80/150 (53%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 82  RRHYMITLEIPCRDKSYHWLLHWITVRGA-KKTQHLSVETSFEKFDTGYVKTKYDFIPSI 140
           RR +++TLE+P +D+SY WLL W++ +   ++++HLSVETS+ + D G   T + F+P  
Sbjct: 22  RRRFLVTLEVPSKDESYAWLLEWLSQQPFRQRSRHLSVETSYTQHDNGKSSTSFSFVPGP 81

Query: 141 GTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQ 200
           GTH F Y+G WI V R RE T  D++ G P+ET+TLT  GRDR +F  +LEEAR LALK+
Sbjct: 82  GTHWFWYKGRWIWVTREREKTMADMRTGSPFETLTLTTLGRDRDVFKELLEEARELALKR 141

Query: 201 YEGKTVMYTALGSEWRPFGHPKRRRPLNSV 230
            EGKTV+YTA G EWR F  P+R+RPL+SV
Sbjct: 142 TEGKTVIYTADGPEWRRF-APRRKRPLSSV 170

It encodes the import and intramitochondrial sorting for the protein. Length = 170
>gnl|CDD|219997 pfam08740, BCS1_N, BCS1 N terminal Back     alignment and domain information
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
PF08740187 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA A 100.0
KOG0743|consensus 457 99.76
KOG0743|consensus457 99.54
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 99.35
KOG0728|consensus404 99.15
KOG0726|consensus440 99.13
KOG0729|consensus435 99.0
KOG0727|consensus408 98.97
KOG0730|consensus693 98.95
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 98.8
KOG0734|consensus752 98.78
KOG0731|consensus774 98.64
KOG0651|consensus388 98.62
KOG0733|consensus802 98.57
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 98.57
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 98.54
KOG0652|consensus424 98.51
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 98.48
CHL00206 2281 ycf2 Ycf2; Provisional 98.48
CHL00195489 ycf46 Ycf46; Provisional 98.42
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 98.37
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 98.36
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 98.36
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 98.35
KOG0735|consensus952 98.31
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 98.29
PRK03992389 proteasome-activating nucleotidase; Provisional 98.27
KOG0736|consensus953 98.22
KOG0733|consensus 802 98.2
CHL00176638 ftsH cell division protein; Validated 98.13
KOG0741|consensus 744 98.11
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 97.98
KOG0732|consensus 1080 97.97
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 97.19
KOG0737|consensus386 96.95
KOG0730|consensus 693 96.65
KOG0738|consensus491 96.49
KOG0739|consensus439 95.85
KOG0742|consensus630 95.26
KOG0740|consensus428 94.67
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 94.45
COG0464 494 SpoVK ATPases of the AAA+ class [Posttranslational 92.02
TIGR00763775 lon ATP-dependent protease La. This protein is ind 83.51
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information 
Probab=100.00  E-value=2.7e-39  Score=277.88  Aligned_cols=156  Identities=38%  Similarity=0.656  Sum_probs=137.9

Q ss_pred             hHHHHHHHhhheEEEEEEeCCChhHHHHHHHHhhcCC-CceeEEEEEeeeeec---------------CCCccccceeEE
Q psy1374          74 KKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGA-KKTQHLSVETSFEKF---------------DTGYVKTKYDFI  137 (263)
Q Consensus        74 ~~~~~~~~~~~~~~tv~I~~~D~~Y~~vm~Wls~q~~-~~sr~l~v~t~~~~~---------------~~g~~~~~~~~~  137 (263)
                      .+.+++++.++|++||||+++|++|+|||.||++|+. ..+|++.|.|.....               ..+...+++.|+
T Consensus        14 ~~~~~~~~~~~f~~sv~I~~~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (187)
T PF08740_consen   14 YSSLWNLFRRRFTSSVEIPSDDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFT   93 (187)
T ss_pred             HHHHHHHHHHhEEEEEEECCCCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEE
Confidence            3678999999999999999999999999999999995 558999999864321               112246899999


Q ss_pred             cCCCeeEEEECCEEEEEEEeccCccccCCCCCcceEEEEEEecCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCC--e
Q psy1374         138 PSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSE--W  215 (263)
Q Consensus       138 P~~G~h~F~ykG~~~~~~R~~~~~~~~~~~g~~~E~ltIs~lg~s~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~--W  215 (263)
                      |++|+|+|||+|+||+|+|.++....+...|.+.|+|+|+|||+|++||++||+||++.|.++++++|+||++.+.+  |
T Consensus        94 P~~G~h~F~y~G~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~~l~~ll~ear~~~~~~~~~~t~Iy~~~~~~~~W  173 (187)
T PF08740_consen   94 PSPGTHWFWYKGRWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPKPLKDLLEEAREYYLKKQKGKTTIYRADGSEYRW  173 (187)
T ss_pred             eCCCCEEEEECCEEEEEEEEeccccccccCCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCC
Confidence            99999999999999999999965555444567899999999999999999999999999999999999999999887  9


Q ss_pred             eeCCCCCCCCCCCee
Q psy1374         216 RPFGHPKRRRPLNSV  230 (263)
Q Consensus       216 ~~~g~~r~~RplsTV  230 (263)
                      ++. .+||+||||||
T Consensus       174 ~~~-~~r~~RplsTV  187 (187)
T PF08740_consen  174 RRV-ASRPKRPLSTV  187 (187)
T ss_pred             cCC-CCcCCCCCCCC
Confidence            996 89999999998

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
>KOG0743|consensus Back     alignment and domain information
>KOG0743|consensus Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0728|consensus Back     alignment and domain information
>KOG0726|consensus Back     alignment and domain information
>KOG0729|consensus Back     alignment and domain information
>KOG0727|consensus Back     alignment and domain information
>KOG0730|consensus Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG0734|consensus Back     alignment and domain information
>KOG0731|consensus Back     alignment and domain information
>KOG0651|consensus Back     alignment and domain information
>KOG0733|consensus Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>KOG0652|consensus Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0735|consensus Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>KOG0736|consensus Back     alignment and domain information
>KOG0733|consensus Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>KOG0741|consensus Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>KOG0732|consensus Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0737|consensus Back     alignment and domain information
>KOG0730|consensus Back     alignment and domain information
>KOG0738|consensus Back     alignment and domain information
>KOG0739|consensus Back     alignment and domain information
>KOG0742|consensus Back     alignment and domain information
>KOG0740|consensus Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 43/319 (13%), Positives = 98/319 (30%), Gaps = 77/319 (24%)

Query: 9   LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDN------ASKFADQAK------- 55
           +D  ++    V     + +    + E+M ++F ++V         S    + +       
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 56  ----------------KKKNFRRKKKKKTKKKKKKKKTKKKN-RRHYM-------ITLEI 91
                            K N  R +     ++   +    KN     +       + L++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 92  PCRDKSYHWLL----HWITVRGAKKTQHL--SVETSFEKFDTGYVKTKYDFIPSIGTHLF 145
            C        +     W+ ++     + +   ++    + D  +  ++ D   +I   + 
Sbjct: 171 -CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIH 228

Query: 146 SYQGNWIRVERSRE-STTLDIQQGIPWETVTLTAFG---------RDRSLF--------F 187
           S Q    R+ +S+     L +   +        AF          R + +          
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 188 NILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIRQF 247
           +I  +  ++ L   E K+++   L    RP   P+     N   L S +A      IR  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRL-SIIA----ESIRDG 340

Query: 248 VADPAW----YLDRGKQNR 262
           +A   W    +++  K   
Sbjct: 341 LA--TWDNWKHVNCDKLTT 357

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 99.02
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 99.02
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 98.98
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 98.95
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 98.94
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 98.86
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 98.6
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 98.49
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 98.24
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 98.08
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 97.99
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 97.94
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 97.92
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 97.91
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 97.86
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 97.83
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 97.82
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 97.82
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 97.77
2r62_A268 Cell division protease FTSH homolog; ATPase domain 97.62
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 97.5
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 97.26
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 97.09
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 96.84
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 96.75
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 96.67
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 96.03
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 95.75
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 95.7
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 95.67
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 95.64
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 91.64
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 88.27
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 88.18
2r44_A331 Uncharacterized protein; putative ATPase, structur 87.08
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 86.84
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 85.54
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 84.14
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 82.36
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 80.81
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 80.57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.02  E-value=7.6e-11  Score=112.07  Aligned_cols=43  Identities=37%  Similarity=0.478  Sum_probs=41.1

Q ss_pred             CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374           1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD   43 (263)
Q Consensus         1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~   43 (263)
                      +|||+|+.|||||+||||||++|+|++||.+++.+||+.+...
T Consensus       292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~  334 (405)
T 4b4t_J          292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK  334 (405)
T ss_dssp             EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred             eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence            5899999999999999999999999999999999999988865
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 263
d1lv7a_256 c.37.1.20 (A:) AAA domain of cell division protein 2e-04
d1ixza_247 c.37.1.20 (A:) AAA domain of cell division protein 7e-04
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 1   MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKF 50
            +T    +LDPAL+RPGR D +  +G       EQ+ K   + V  A   
Sbjct: 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI 204
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 98.78
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 98.65
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 98.59
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 98.56
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 96.11
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 93.78
d1svma_362 Papillomavirus large T antigen helicase domain {Si 89.17
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 86.84
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1.1e-09  Score=95.12  Aligned_cols=43  Identities=26%  Similarity=0.291  Sum_probs=41.2

Q ss_pred             CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374           1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD   43 (263)
Q Consensus         1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~   43 (263)
                      +|||+|+.|||||+||||||.+|+|++|+.+++.+||+.+++.
T Consensus       145 ~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~  187 (258)
T d1e32a2         145 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN  187 (258)
T ss_dssp             EEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTT
T ss_pred             EeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccC
Confidence            4899999999999999999999999999999999999999965
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure