Psyllid ID: psy13853

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MSVRWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETRT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEcccEEEEEEcccEEcEEEEcccccccHHHHHHHccccccccEEEEcccccccccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEcEEccccccccccccccccccccccccHEEEEEcccccEEEEEEcccccEcHHHHHHHcccccccccEEEEcccccccccccEcccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSVRWASVYHYLTVLeipldaqnphlgsfRVLSFVVTTLHSrhvssrirmldqpymtdlieansmghepnlidiysaswgptddgktvdgprnaTMRAIVRGVNETRT
Flexible Loop (DISEMBL)
MSVRWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLhsrhvssrirmldQPYMTDLIEANSMGHEPNLIDIYsaswgptddgktvdgprnatmraivrgvnetrt
Low Complexity Region (SEG)
MSVRWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETRT
Disordered region (IsUnstruct)
***RWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWG****************************
Disordered Region (DISOPRED)
********YHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET**
Disordered Region (DISEMBL)
MSVRWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETRT
Disordered Region (DISPRO)
***RWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVRWASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q03333	638	Neuroendocrine convertase	yes	N/A	0.555	0.094	0.716	3e-20
P16519	638	Neuroendocrine convertase	no	N/A	0.555	0.094	0.716	3e-20
Q5REC2	638	Neuroendocrine convertase	yes	N/A	0.555	0.094	0.716	3e-20
P28841	637	Neuroendocrine convertase	yes	N/A	0.555	0.094	0.716	3e-20
P21661	637	Neuroendocrine convertase	yes	N/A	0.555	0.094	0.716	3e-20
Q9GLR0	638	Neuroendocrine convertase	yes	N/A	0.555	0.094	0.716	3e-20
P29122	969	Proprotein convertase sub	no	N/A	0.546	0.060	0.583	3e-13
Q63415	937	Proprotein convertase sub	no	N/A	0.546	0.062	0.583	4e-13
Q28193	797	Furin OS=Bos taurus GN=FU	no	N/A	0.546	0.074	0.583	2e-12
P29119	783	Furin-1 OS=Xenopus laevis	N/A	N/A	0.546	0.075	0.583	2e-12

>sp|Q03333|NEC2_PIG Neuroendocrine convertase 2 OS=Sus scrofa GN=PCSK2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 297

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.
Sus scrofa (taxid: 9823)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 4

>sp|P16519|NEC2_HUMAN Neuroendocrine convertase 2 OS=Homo sapiens GN=PCSK2 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 297

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q5REC2|NEC2_PONAB Neuroendocrine convertase 2 OS=Pongo abelii GN=PCSK2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 297

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P28841|NEC2_RAT Neuroendocrine convertase 2 OS=Rattus norvegicus GN=Pcsk2 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct: 237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 296

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P21661|NEC2_MOUSE Neuroendocrine convertase 2 OS=Mus musculus GN=Pcsk2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct: 237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 296

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q9GLR0|NEC2_BOVIN Neuroendocrine convertase 2 OS=Bos taurus GN=PCSK2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 297

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P29122|PCSK6_HUMAN Proprotein convertase subtilisin/kexin type 6 OS=Homo sapiens GN=PCSK6 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLD   +TD++EA S+G  PN IDIYSASWGP DDGKTVDGP     +A   G+ + R
Sbjct: 276 IRMLDGD-VTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLAKQAFEYGIKKGR 334

Likely to represent an endoprotease activity within the constitutive secretory pathway, with unique restricted distribution in both neuroendocrine and non-neuroendocrine tissues and capable of cleavage at the RX(K/R)R consensus motif.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q63415|PCSK6_RAT Proprotein convertase subtilisin/kexin type 6 OS=Rattus norvegicus GN=Pcsk6 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLD   +TD++EA S+G  PN IDIYSASWGP DDGKTVDGP     +A   G+ + R
Sbjct: 257 IRMLDGD-VTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLAKQAFEYGIKKGR 315

Likely to represent an endoprotease activity within the constitutive secretory pathway, with unique restricted distribution in both neuroendocrine and non-neuroendocrine tissues and capable of cleavage at the RX(K/R)R consensus motif.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q28193|FURIN_BOVIN Furin OS=Bos taurus GN=FURIN PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP +    A  RGV++ R
Sbjct: 224 VRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPAHLAEEAFFRGVSQGR 282

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

>sp|P29119|FURI1_XENLA Furin-1 OS=Xenopus laevis GN=furin PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV + R
Sbjct: 222 VRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPAKLAEEAFYRGVTQGR 280

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
242014509	574	Neuroendocrine convertase 2 precursor, p	0.555	0.104	0.983	6e-28
391338328	639	PREDICTED: neuroendocrine convertase 2-l	0.555	0.093	0.983	8e-28
262300825	108	prohormone convertase [Cryptocellus cent	0.564	0.564	0.967	8e-28
262300801	108	prohormone convertase [Aphonopelma chalc	0.564	0.564	0.967	9e-28
157813670	108	putative neuroendocrine convertase 2 pre	0.555	0.555	0.983	9e-28
262300897	108	prohormone convertase [Stenochrus portor	0.555	0.555	0.983	9e-28
262300835	108	prohormone convertase [Eumesocampa frigi	0.564	0.564	0.967	9e-28
241634905	430	prohormone convertase, putative [Ixodes	0.555	0.139	0.983	9e-28
262300873	108	prohormone convertase [Nicoletia meinert	0.564	0.564	0.967	9e-28
262300879	108	prohormone convertase [Polyzonium german	0.564	0.564	0.967	1e-27

>gi|242014509|ref|XP_002427932.1| Neuroendocrine convertase 2 precursor, putative [Pediculus humanus corporis] gi|212512416|gb|EEB15194.1| Neuroendocrine convertase 2 precursor, putative [Pediculus humanus corporis]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 187 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 246

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391338328|ref|XP_003743511.1| PREDICTED: neuroendocrine convertase 2-like [Metaseiulus occidentalis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 248 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 307

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300825|gb|ACY43005.1| prohormone convertase [Cryptocellus centralis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/61 (96%), Positives = 59/61 (96%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Query: 108 T 108
            
Sbjct: 92  N 92

Source: Cryptocellus centralis

Species: Cryptocellus centralis

Genus: Cryptocellus

Family: Ricinoididae

Order: Ricinulei

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300801|gb|ACY42993.1| prohormone convertase [Aphonopelma chalcodes]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/61 (96%), Positives = 59/61 (96%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Query: 108 T 108
            
Sbjct: 92  N 92

Source: Aphonopelma chalcodes

Species: Aphonopelma chalcodes

Genus: Aphonopelma

Family: Theraphosidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157813670|gb|ABV81580.1| putative neuroendocrine convertase 2 precursor [Mastigoproctus giganteus]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Mastigoproctus giganteus

Species: Mastigoproctus giganteus

Genus: Mastigoproctus

Family: Thelyphonidae

Order: Uropygi

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300897|gb|ACY43041.1| prohormone convertase [Stenochrus portoricensis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Stenochrus portoricensis

Species: Stenochrus portoricensis

Genus: Stenochrus

Family: Schizomidae

Order: Schizomida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300835|gb|ACY43010.1| prohormone convertase [Eumesocampa frigilis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/61 (96%), Positives = 59/61 (96%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Query: 108 T 108
            
Sbjct: 92  N 92

Source: Eumesocampa frigilis

Species: Eumesocampa frigilis

Genus: Eumesocampa

Family: Campodeidae

Class: Diplura

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241634905|ref|XP_002410536.1| prohormone convertase, putative [Ixodes scapularis] gi|215503444|gb|EEC12938.1| prohormone convertase, putative [Ixodes scapularis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 31  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 90

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300873|gb|ACY43029.1| prohormone convertase [Nicoletia meinerti]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/61 (96%), Positives = 59/61 (96%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Query: 108 T 108
            
Sbjct: 92  N 92

Source: Nicoletia meinerti

Species: Nicoletia meinerti

Genus: Nicoletia

Family: Nicoletiidae

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300879|gb|ACY43032.1| prohormone convertase [Polyzonium germanicum]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/61 (96%), Positives = 59/61 (96%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct: 32  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Query: 108 T 108
            
Sbjct: 92  N 92

Source: Polyzonium germanicum

Species: Polyzonium germanicum

Genus: Polyzonium

Family: Polyzoniidae

Order: Polyzoniida

Class: Diplopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
UNIPROTKB|E9P883	527	egl-3 "Protein EGL-3, isoform	0.555	0.113	0.933	2.6e-25
UNIPROTKB|Q18772	556	egl-3 "Protein EGL-3, isoform	0.555	0.107	0.933	3.1e-25
WB|WBGene00001172	652	egl-3 [Caenorhabditis elegans	0.555	0.092	0.933	5e-25
UNIPROTKB|G5ECN9	652	egl-3 "Prohormone convertase 2	0.555	0.092	0.933	5e-25
FB|FBgn0023179	654	amon "amontillado" [Drosophila	0.555	0.091	0.916	1.4e-24
UNIPROTKB|F1NUG0	547	PCSK2 "Uncharacterized protein	0.629	0.124	0.632	3.8e-19
ZFIN|ZDB-GENE-090608-1	703	pcsk2 "proprotein convertase s	0.555	0.085	0.716	5.1e-19
UNIPROTKB|F1SBI5	637	PCSK2 "Neuroendocrine converta	0.657	0.111	0.638	5.4e-19
UNIPROTKB|Q03333	638	PCSK2 "Neuroendocrine converta	0.657	0.111	0.638	5.4e-19
MGI|MGI:97512	637	Pcsk2 "proprotein convertase s	0.555	0.094	0.716	6.9e-19

UNIPROTKB|E9P883 egl-3 "Protein EGL-3, isoform c" [Caenorhabditis elegans (taxid:6239)]

 Score = 293 (108.2 bits), Expect = 2.6e-25, P = 2.6e-25
 Identities = 56/60 (93%), Positives = 57/60 (95%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct:   120 IRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 179

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

UNIPROTKB|Q18772 egl-3 "Protein EGL-3, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 293 (108.2 bits), Expect = 3.1e-25, P = 3.1e-25
 Identities = 56/60 (93%), Positives = 57/60 (95%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct:   149 IRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 208

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

WB|WBGene00001172 egl-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 293 (108.2 bits), Expect = 5.0e-25, P = 5.0e-25
 Identities = 56/60 (93%), Positives = 57/60 (95%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct:   245 IRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 304

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0061096 "negative regulation of turning behavior involved in mating" evidence=IMP

UNIPROTKB|G5ECN9 egl-3 "Prohormone convertase 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 293 (108.2 bits), Expect = 5.0e-25, P = 5.0e-25
 Identities = 56/60 (93%), Positives = 57/60 (95%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRAIVRGVNE R
Sbjct:   245 IRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 304

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

FB|FBgn0023179 amon "amontillado" [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 55/60 (91%), Positives = 57/60 (95%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRAIV+GVNE R
Sbjct:   267 IRMLDQPYMTDLIEANSMGHEPHKIHIYSASWGPTDDGKTVDGPRNATMRAIVQGVNEGR 326

GO:0008233 "peptidase activity" evidence=ISS;IDA

GO:0016486 "peptide hormone processing" evidence=ISS;IMP

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;IBA

GO:0035187 "hatching behavior" evidence=IMP

GO:0006508 "proteolysis" evidence=IDA

GO:0005576 "extracellular region" evidence=IDA

GO:0002165 "instar larval or pupal development" evidence=IMP

GO:0033500 "carbohydrate homeostasis" evidence=IMP

GO:0035180 "larval wandering behavior" evidence=IMP

GO:0005615 "extracellular space" evidence=IBA

GO:0016485 "protein processing" evidence=IBA

UNIPROTKB|F1NUG0 PCSK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query:    40 HSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAI 99
             +S+  ++ IRMLDQP+MTD+IEA+S+ H P +IDIYSASWGPTD+GKTVDGPR  T++A+
Sbjct:   139 NSKVAATGIRMLDQPFMTDIIEASSISHMPQVIDIYSASWGPTDNGKTVDGPRELTLQAM 198

Query:   100 VRGVNETR 107
               GVN+ R
Sbjct:   199 ADGVNKGR 206

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0034230 "enkephalin processing" evidence=IEA

ZFIN|ZDB-GENE-090608-1 pcsk2 "proprotein convertase subtilisin/kexin type 2" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQP+MTD+IEA+S+ H P +IDIYSASWGPTDDGKTVDGPR  T++A+  GVN+ R
Sbjct:   301 IRMLDQPFMTDIIEASSISHMPQVIDIYSASWGPTDDGKTVDGPRELTLQAMADGVNKGR 360

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|F1SBI5 PCSK2 "Neuroendocrine convertase 2" [Sus scrofa (taxid:9823)]

 Score = 237 (88.5 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 46/72 (63%), Positives = 57/72 (79%)

Query:    36 VTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNAT 95
             V   +S  V+  IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T
Sbjct:   227 VGVAYSSKVAG-IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELT 285

Query:    96 MRAIVRGVNETR 107
             ++A+  GVN+ R
Sbjct:   286 LQAMADGVNKGR 297

GO:0034230 "enkephalin processing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q03333 PCSK2 "Neuroendocrine convertase 2" [Sus scrofa (taxid:9823)]

 Score = 237 (88.5 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 46/72 (63%), Positives = 57/72 (79%)

Query:    36 VTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNAT 95
             V   +S  V+  IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T
Sbjct:   227 VGVAYSSKVAG-IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELT 285

Query:    96 MRAIVRGVNETR 107
             ++A+  GVN+ R
Sbjct:   286 LQAMADGVNKGR 297

GO:0030133 "transport vesicle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:97512 Pcsk2 "proprotein convertase subtilisin/kexin type 2" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 6.9e-19, P = 6.9e-19
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query:    48 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
             IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+ R
Sbjct:   237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNKGR 296

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;IDA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=ISO;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016485 "protein processing" evidence=IDA

GO:0016486 "peptide hormone processing" evidence=ISO;IDA;IMP

GO:0016540 "protein autoprocessing" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030070 "insulin processing" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0034230 "enkephalin processing" evidence=IDA

GO:0034231 "islet amyloid polypeptide processing" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5REC2	NEC2_PONAB	3, ., 4, ., 2, 1, ., 9, 4	0.7166	0.5555	0.0940	yes	N/A
Q03333	NEC2_PIG	3, ., 4, ., 2, 1, ., 9, 4	0.7166	0.5555	0.0940	yes	N/A
P21661	NEC2_MOUSE	3, ., 4, ., 2, 1, ., 9, 4	0.7166	0.5555	0.0941	yes	N/A
P28841	NEC2_RAT	3, ., 4, ., 2, 1, ., 9, 4	0.7166	0.5555	0.0941	yes	N/A
Q9GLR0	NEC2_BOVIN	3, ., 4, ., 2, 1, ., 9, 4	0.7166	0.5555	0.0940	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
cd04059	297	cd04059, Peptidases_S8_Protein_convertases_Kexins_	2e-23
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	0.003

>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases

 Score = 90.3 bits (225), Expect = 2e-23
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           IRMLD   +TD++EA S+G  P+ IDIYS SWGP DDGKTVDGP     RA+  GV   R
Sbjct: 116 IRMLDGD-VTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGR 174

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 48  IRMLDQPYMTDLIEANSMG---HEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVN 104
           +++L     TD   A ++      PN I + + S GP D       P ++   AI     
Sbjct: 77  VKVLPGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDG------PPSSWSSAIDELAV 130

Query: 105 ETRT 108
               
Sbjct: 131 NGAD 134

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG3526|consensus	629		99.97
KOG3525|consensus	431		99.8
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	98.95
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	98.24
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	98.04
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	97.95
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	97.85
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	97.83
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	97.81
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	97.66
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	97.65
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	97.61
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	97.58
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	97.58
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	97.42
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	97.24
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	97.22
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	97.19
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	97.1
PTZ00262	639	subtilisin-like protease; Provisional	96.99
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	96.95
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	96.79
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	96.62
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	96.61
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	96.53
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	96.48
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	96.41
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	96.37
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	96.28
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	96.04
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	96.03
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	95.29
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	94.84
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	94.54
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	92.98
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	88.77
cd04056	361	Peptidases_S53 Peptidase domain in the S53 family.	85.9
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	83.4

>KOG3526|consensus

Probab=99.97  E-value=1.7e-32  Score=233.55  Aligned_cols=95  Identities=63%  Similarity=0.890  Sum_probs=87.9

Q ss_pred             hhhhhhhhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCC
Q psy13853          5 WASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDD   84 (108)
Q Consensus         5 ~~~~~~~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~Dd   84 (108)
                      |-.-.---|||||++.+||.+||||       |+|  ++||+||||||+|++||++||.+++|.++.|||||+||||.||
T Consensus       206 wfnshgtrcagev~aardngicgvg-------vay--dskvagirmldqpymtdlieansmghep~kihiysaswgptdd  276 (629)
T KOG3526|consen  206 WFNSHGTRCAGEVVAARDNGICGVG-------VAY--DSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDD  276 (629)
T ss_pred             hhhccCccccceeeeeccCCceeee-------eee--ccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCC
Confidence            3333334699999999999999976       666  8999999999999999999999999999999999999999999


Q ss_pred             CCcccCcHHHHHHHHHHHHhccCC
Q psy13853         85 GKTVDGPRNATMRAIVRGVNETRT  108 (108)
Q Consensus        85 G~tvdgP~~L~~~Al~~Gv~~GRn  108 (108)
                      |||||||..++.+||..||++|||
T Consensus       277 gktvdgprnatmraiv~gvnegrn  300 (629)
T KOG3526|consen  277 GKTVDGPRNATMRAIVRGVNEGRN  300 (629)
T ss_pred             CcccCCchhHHHHHHHHhhhcccC
Confidence            999999999999999999999997

>KOG3525|consensus

Probab=99.80  E-value=1.3e-20  Score=158.41  Aligned_cols=89  Identities=38%  Similarity=0.518  Sum_probs=83.6

Q ss_pred             hhhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCccc
Q psy13853         10 HYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        10 ~~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvd   89 (108)
                      +-.|+|++|+.+||..|++|       +++  +++++|+|||++ .++|.+|+.++.|.++++|||||||||+|||+|++
T Consensus        83 g~~Ca~~~a~~~~~~~C~vg-------~~~--~~~~~g~~~l~~-~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~  152 (431)
T KOG3525|consen   83 GTRCAGCVAARANNLTCGVG-------VAY--NATIGGIRMLAG-CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCD  152 (431)
T ss_pred             CCCCCcccccccCCCcCCCC-------ccc--Cccccceeeeee-ecccceecccccCCCCCceeecCcCCcccCCCcCC
Confidence            45899999999999999987       544  788999999999 59999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhccCC
Q psy13853         90 GPRNATMRAIVRGVNETRT  108 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~GRn  108 (108)
                      +|..|.++|+++++..||.
T Consensus       153 ~~~~l~~~~~~~~~~~g~~  171 (431)
T KOG3525|consen  153 GPGTLAREALVYGRGCGRH  171 (431)
T ss_pred             CCcchhhhhhhcccccccc
Confidence            9999999999999999984

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=98.95  E-value=2.5e-09  Score=82.05  Aligned_cols=86  Identities=45%  Similarity=0.651  Sum_probs=75.3

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCcccCc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGP   91 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvdgP   91 (108)
                      .+||.|+...+|..|..|         +||+|+|..+|+++. ..++..++.++.+..+.+||.+.|||+......+++|
T Consensus        89 ~vAgiiag~~~~~~~~~G---------vAp~a~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~  158 (297)
T cd04059          89 RCAGEIAAVGNNGICGVG---------VAPGAKLGGIRMLDG-DVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGP  158 (297)
T ss_pred             ceeeEEEeecCCCccccc---------ccccceEeEEEecCC-ccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCC
Confidence            467888887777666644         788999999999999 4899999999999999999999999998888888999


Q ss_pred             HHHHHHHHHHHHhccC
Q psy13853         92 RNATMRAIVRGVNETR  107 (108)
Q Consensus        92 ~~L~~~Al~~Gv~~GR  107 (108)
                      ..+..+|+++.++++|
T Consensus       159 ~~~~~~a~~~a~~~~~  174 (297)
T cd04059         159 GPLAQRALENGVTNGR  174 (297)
T ss_pred             cHHHHHHHHHHHHhCC
Confidence            9999999999998765

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=98.24  E-value=1.1e-06  Score=68.98  Aligned_cols=82  Identities=13%  Similarity=-0.048  Sum_probs=60.2

Q ss_pred             hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      -.|||.|+...+|..+.         .+++|++||..+|+++....++...++|+.|.. +.++|.++|||...     .
T Consensus        89 T~VAGiIaa~~~n~~g~---------~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~-----~  154 (291)
T cd07483          89 THVAGIIAAVRDNGIGI---------DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSF-----S  154 (291)
T ss_pred             HHHHHHHhCcCCCCCce---------EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCC-----C
Confidence            36899999999887665         447889999999999643456666778888765 47999999999632     1


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                      ......++|+++..++|
T Consensus       155 ~~~~~~~~ai~~a~~~g  171 (291)
T cd07483         155 PNKEWVDDAIKYAESKG  171 (291)
T ss_pred             CccHHHHHHHHHHHhCC
Confidence            12345667777776665

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=98.04  E-value=8.3e-06  Score=63.08  Aligned_cols=81  Identities=15%  Similarity=-0.055  Sum_probs=57.4

Q ss_pred             hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCC-----------CCcccEEeCCC
Q psy13853         11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHE-----------PNLIDIYSASW   79 (108)
Q Consensus        11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~-----------~~~iDIYScSW   79 (108)
                      -.|||.|+...+|..+-.         ++||+|||..+|+++...-+..+-++|+.|.           .+.++|.++||
T Consensus        75 T~vAgiiaa~~~~~~~~~---------GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~  145 (285)
T cd07496          75 THVAGTIAAVTNNGVGVA---------GVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSL  145 (285)
T ss_pred             HHHHHHHhCcCCCCCCce---------eecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCC
Confidence            468999999888776654         4678999999999975322334445555443           46789999999


Q ss_pred             CCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         80 GPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        80 GP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      |.....      ....++|+.....+|
T Consensus       146 G~~~~~------~~~~~~ai~~a~~~G  166 (285)
T cd07496         146 GGDGAC------SATMQNAINDVRARG  166 (285)
T ss_pred             CCCCCC------CHHHHHHHHHHHHCC
Confidence            985432      345667888777766

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=97.95  E-value=1.5e-05  Score=64.28  Aligned_cols=80  Identities=14%  Similarity=-0.039  Sum_probs=46.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCC--hHh--------hhhhccCC-CCcccEEeCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMT--DLI--------EANSMGHE-PNLIDIYSASWG   80 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vt--d~~--------EA~ALsy~-~~~iDIYScSWG   80 (108)
                      -|||.||...++.....+.--....+++||+|||.++|+|+.....  ...        .+.++.|. .+.+||.|+|||
T Consensus        61 hvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G  140 (311)
T cd07497          61 SCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWG  140 (311)
T ss_pred             hHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCC
Confidence            4899999876543221100000123678999999999999521122  111        12334443 468999999999


Q ss_pred             CCCCCCcccCc
Q psy13853         81 PTDDGKTVDGP   91 (108)
Q Consensus        81 P~DdG~tvdgP   91 (108)
                      ......+...|
T Consensus       141 ~~~~~~~~~~~  151 (311)
T cd07497         141 ISNFAYTGYAP  151 (311)
T ss_pred             cCCCCcccccc
Confidence            86654433333

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=97.85  E-value=1.6e-05  Score=60.88  Aligned_cols=82  Identities=15%  Similarity=0.076  Sum_probs=56.9

Q ss_pred             hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCC-CCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcc
Q psy13853         11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQ-PYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTV   88 (108)
Q Consensus        11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g-~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tv   88 (108)
                      -.|||.|+...+|..+-         .+++|+++|-.+|+++. ...++..-..++.+.. +.+||+++|||..+..   
T Consensus        66 T~vAgiiag~~~n~~~~---------~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~---  133 (295)
T cd07474          66 THVAGIIAGNGVNVGTI---------KGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG---  133 (295)
T ss_pred             HHHHHHHhcCCCccCce---------EeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---
Confidence            35889999888885554         34788999999999962 1344444445555543 4899999999986544   


Q ss_pred             cCcHHHHHHHHHHHHhcc
Q psy13853         89 DGPRNATMRAIVRGVNET  106 (108)
Q Consensus        89 dgP~~L~~~Al~~Gv~~G  106 (108)
                        +.....+++++..++|
T Consensus       134 --~~~~~~~~~~~~~~~g  149 (295)
T cd07474         134 --PDDPDAIAINNAVKAG  149 (295)
T ss_pred             --CCCHHHHHHHHHHhcC
Confidence              4445667777777665

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=97.83  E-value=4.6e-05  Score=58.34  Aligned_cols=63  Identities=14%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC--ChHhhhhhccC-----------CCCcccEEeCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM--TDLIEANSMGH-----------EPNLIDIYSAS   78 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v--td~~EA~ALsy-----------~~~~iDIYScS   78 (108)
                      .++|.|+...++..| .|         ++|+++|..+|+++....  .+..++..+..           ..+.+||.++|
T Consensus        57 ~vagii~g~~~~~~~-~G---------vAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S  126 (264)
T cd07481          57 HTMGTMVGNDGDGQQ-IG---------VAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNS  126 (264)
T ss_pred             hhhhheeecCCCCCc-eE---------ECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeC
Confidence            568888877666555 44         688999999999986322  23333332222           12568999999


Q ss_pred             CCCCCC
Q psy13853         79 WGPTDD   84 (108)
Q Consensus        79 WGP~Dd   84 (108)
                      ||....
T Consensus       127 ~G~~~~  132 (264)
T cd07481         127 WGGPSG  132 (264)
T ss_pred             CCcCCC
Confidence            998765

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=97.81  E-value=6e-05  Score=59.53  Aligned_cols=84  Identities=13%  Similarity=0.015  Sum_probs=53.3

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCC-CCcccEEeCCCCCCCCCCccc-
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVD-   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~-~~~iDIYScSWGP~DdG~tvd-   89 (108)
                      .|||.|++. +|.++.         ++++|+++|..+|+++...+.+.++ .|+.|. ...+.+.|.|||..++..... 
T Consensus        56 ~VAGiIaa~-~n~~G~---------~GvAp~a~l~~i~v~~~~~~~~ai~-~A~~~~~~~~v~~in~s~g~~~~~~~~~p  124 (277)
T cd04843          56 AVLGIIVAK-DNGIGV---------TGIAHGAQAAVVSSTRVSNTADAIL-DAADYLSPGDVILLEMQTGGPNNGYPPLP  124 (277)
T ss_pred             hhheeeeee-cCCCce---------eeeccCCEEEEEEecCCCCHHHHHH-HHHhccCCCCEEEEEccccCCCcCcccCc
Confidence            579999985 676765         4578899999999996212333333 334432 345678899999987665432 


Q ss_pred             -CcHHHHHHHHHHHHhcc
Q psy13853         90 -GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 -gP~~L~~~Al~~Gv~~G  106 (108)
                       .+.....+|+++..++|
T Consensus       125 ~~~~~~~~~av~~a~~~G  142 (277)
T cd04843         125 VEYEQANFDAIRTATDLG  142 (277)
T ss_pred             chhhHHHHHHHHHHHhCC
Confidence             12223345777766555

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=97.66  E-value=5.8e-05  Score=56.50  Aligned_cols=84  Identities=14%  Similarity=0.061  Sum_probs=53.0

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCCC---CcccEEeCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHEP---NLIDIYSASWGPTDDG   85 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~~---~~iDIYScSWGP~DdG   85 (108)
                      .|||.|+...+|+  +.+      ..+++|+++|-.+|+++..   ..++..+|.....+.   ..++|++.|||..++.
T Consensus        49 ~vAgiiag~~~~~--~~~------~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~  120 (264)
T cd07487          49 HVAGIIAGSGRAS--NGK------YKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP  120 (264)
T ss_pred             HHHHHHhcCCccc--CCc------eEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCC
Confidence            5889998888774  111      2567899999999999863   123333333322232   2799999999987754


Q ss_pred             CcccCcHHHHHHHHHHHHhcc
Q psy13853         86 KTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        86 ~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                         ........+++++..++|
T Consensus       121 ---~~~~~~~~~~~~~~~~~g  138 (264)
T cd07487         121 ---SYGEDPLCQAVERLWDAG  138 (264)
T ss_pred             ---CCCCCHHHHHHHHHHhCC
Confidence               122234455666665554

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=97.65  E-value=7.6e-05  Score=56.94  Aligned_cols=83  Identities=16%  Similarity=0.039  Sum_probs=54.5

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhh----hhhccCCC-CcccEEeCCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIE----ANSMGHEP-NLIDIYSASWGPTDDGK   86 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~E----A~ALsy~~-~~iDIYScSWGP~DdG~   86 (108)
                      .++|.|+...++..           ++++|++++-.+|+.+.+ .....+    +.++.|.. +.+||+++|||..+...
T Consensus        52 ~vagiia~~~~~~~-----------~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~  119 (261)
T cd07493          52 AVLSTMAGYTPGVM-----------VGTAPNASYYLARTEDVA-SETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN  119 (261)
T ss_pred             hhheeeeeCCCCCE-----------EEeCCCCEEEEEEecccC-CcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence            37788888665422           446789999999987653 322222    34555533 57999999999765433


Q ss_pred             c--------ccCcHHHHHHHHHHHHhcc
Q psy13853         87 T--------VDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        87 t--------vdgP~~L~~~Al~~Gv~~G  106 (108)
                      .        ++++.....+|+++..++|
T Consensus       120 ~~~~~~~~~~~~~~~~l~~a~~~a~~~g  147 (261)
T cd07493         120 PTYSYTYADMDGKTSFISRAANIAASKG  147 (261)
T ss_pred             cccccccccccccchHHHHHHHHHHhCC
Confidence            2        4455555667888777766

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=97.61  E-value=7.5e-05  Score=56.19  Aligned_cols=79  Identities=15%  Similarity=0.016  Sum_probs=54.0

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .+||.|+...+|..+..         +++|+|+|-.+|+++... .+...-.++|.|.. +.++|.+.|||....     
T Consensus        68 ~va~ii~~~~~~~~~~~---------GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~-----  133 (259)
T cd07473          68 HVAGIIGAVGNNGIGIA---------GVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP-----  133 (259)
T ss_pred             HHHHHHHCcCCCCCceE---------EeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-----
Confidence            57888888777776643         468899999999998842 22222334444432 689999999998655     


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                        .....+++++...+|
T Consensus       134 --~~~~~~~~~~~~~~g  148 (259)
T cd07473         134 --SQALRDAIARAIDAG  148 (259)
T ss_pred             --CHHHHHHHHHHHhCC
Confidence              334566777766654

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=97.58  E-value=6.8e-05  Score=56.26  Aligned_cols=77  Identities=14%  Similarity=-0.012  Sum_probs=50.0

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDG   90 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdg   90 (108)
                      .|||.|+...+| .+.         .+++|+++|-.+|+++....+...-.+++.|.. +.+||+++|||..+..   ..
T Consensus        48 ~vAgiia~~~~~-~~~---------~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~  114 (254)
T cd07490          48 HVSGTIGGGGAK-GVY---------IGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---ED  114 (254)
T ss_pred             HHHHHHhcCCCC-CCE---------EEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---Cc
Confidence            468888876663 344         457889999999999873222333344555443 5799999999987755   34


Q ss_pred             cHHHHHHHHHH
Q psy13853         91 PRNATMRAIVR  101 (108)
Q Consensus        91 P~~L~~~Al~~  101 (108)
                      |-....+++.+
T Consensus       115 ~~~~~~~~~~~  125 (254)
T cd07490         115 PLEEAVEALSN  125 (254)
T ss_pred             HHHHHHHHHHH
Confidence            44334444444

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=97.58  E-value=0.0001  Score=54.51  Aligned_cols=85  Identities=16%  Similarity=0.095  Sum_probs=55.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC--CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTV   88 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tv   88 (108)
                      .|+|.|+...+| .+.         .+++|+++|-.+|+++.+  ..++....+++.+.. +.+||++.|||+.+.....
T Consensus        51 ~vagiiag~~~~-~~~---------~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~  120 (267)
T cd04848          51 HVAGVIAAARDG-GGM---------HGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTV  120 (267)
T ss_pred             HHHHHHhcCcCC-CCc---------ccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccc
Confidence            577888776666 443         457899999999999873  123333344444433 4799999999998866543


Q ss_pred             c--------CcHHHHHHHHHHHHhcc
Q psy13853         89 D--------GPRNATMRAIVRGVNET  106 (108)
Q Consensus        89 d--------gP~~L~~~Al~~Gv~~G  106 (108)
                      +        ....+..++++...++|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (267)
T cd04848         121 STTYKGSAATQGNTLLAALARAANAG  146 (267)
T ss_pred             ccchhhhccccchHHHHHHHHHhhCC
Confidence            3        23334555666555554

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=97.42  E-value=0.00021  Score=53.40  Aligned_cols=81  Identities=20%  Similarity=0.101  Sum_probs=52.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .+||.|+...+|..+-         .+++|+++|..+|+++.+ ..+...-++++.|.. +.+||.++|||..+...   
T Consensus        45 ~vAgiiag~~~~~~~~---------~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~---  112 (242)
T cd07498          45 ACAGVAAAVGNNGLGV---------AGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE---  112 (242)
T ss_pred             HHHHHHHhccCCCcee---------EeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc---
Confidence            4677787776665544         457899999999999874 123444455666654 57999999999866432   


Q ss_pred             CcHHHHHHHHHHHHh
Q psy13853         90 GPRNATMRAIVRGVN  104 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~  104 (108)
                      .......+++.++.+
T Consensus       113 ~~~~~~~~~~~~~~~  127 (242)
T cd07498         113 SISSAIDNAATYGRN  127 (242)
T ss_pred             hHHHHHHHHHHHHhh
Confidence            112233345555544

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=97.24  E-value=0.0003  Score=55.00  Aligned_cols=66  Identities=14%  Similarity=-0.162  Sum_probs=46.0

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKT   87 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~t   87 (108)
                      .++|.|+...+| .|++         ++||+|+|-.+|++.++ ...+..-++++.|.. +..||+++|||...+|..
T Consensus        51 ~VAgiiag~~~~-~~~~---------GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~  118 (297)
T cd07480          51 HCAGTIFGRDVP-GPRY---------GVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLV  118 (297)
T ss_pred             HHHHHHhcccCC-Cccc---------ccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccc
Confidence            478888876655 4553         46889999999998653 233333455666554 467999999999887653

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=97.22  E-value=0.00034  Score=53.30  Aligned_cols=82  Identities=11%  Similarity=-0.085  Sum_probs=48.1

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC-ChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM-TDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v-td~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+...++.             ++||+|+|..+|+++.... +...-.+++.+.. +.++|.+.|||........+
T Consensus        58 ~vAgiia~~~~~~-------------GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~  124 (294)
T cd07482          58 AVAGQIAANGNIK-------------GVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEY  124 (294)
T ss_pred             HHHHHHhcCCCCc-------------eeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCccc
Confidence            4567776644332             4688999999999987412 2233334454443 46999999999765443322


Q ss_pred             ----CcHHHHHHHHHHHHhcc
Q psy13853         90 ----GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 ----gP~~L~~~Al~~Gv~~G  106 (108)
                          .....-.+|+....++|
T Consensus       125 ~~~~~~~~~~~~~i~~a~~~g  145 (294)
T cd07482         125 EDDDVEYNAYKKAINYAKSKG  145 (294)
T ss_pred             ccchhhhHHHHHHHHHHHHCC
Confidence                11122344555554444

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=97.19  E-value=0.00085  Score=53.45  Aligned_cols=79  Identities=14%  Similarity=0.065  Sum_probs=51.5

Q ss_pred             ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCC------cccCcHHHHHH
Q psy13853         25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGK------TVDGPRNATMR   97 (108)
Q Consensus        25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~------tvdgP~~L~~~   97 (108)
                      -+|+|.-++-...++||+++|..+|+++. ...+..++  |.|.. +..||.|.|||...+..      .+........+
T Consensus        60 ~~gHGT~vag~i~GvAP~a~i~~vkv~~~-~~~~~~~a--i~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~  136 (298)
T cd07494          60 ENGHGTGESANLFAIAPGAQFIGVKLGGP-DLVNSVGA--FKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAA  136 (298)
T ss_pred             CCCcchheeeceeEeCCCCeEEEEEccCC-CcHHHHHH--HHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHH
Confidence            34777655444578999999999999987 35555444  33432 68999999999743221      12222334556


Q ss_pred             HHHHHHhcc
Q psy13853         98 AIVRGVNET  106 (108)
Q Consensus        98 Al~~Gv~~G  106 (108)
                      |+++.+++|
T Consensus       137 ai~~A~~~G  145 (298)
T cd07494         137 TLQDAVARG  145 (298)
T ss_pred             HHHHHHHCC
Confidence            777776665

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=97.10  E-value=0.00052  Score=53.77  Aligned_cols=62  Identities=15%  Similarity=0.066  Sum_probs=43.8

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTD   83 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~D   83 (108)
                      .|||.|+...+|  +++        .++||+++|-.+|+++.+ ..+...-+.++.+.. +.+||.++|||...
T Consensus        73 ~vAgiia~~~~~--~~~--------~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~  136 (312)
T cd07489          73 HVAGIIAANPNA--YGF--------TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS  136 (312)
T ss_pred             HHHHHHhcCCCC--Cce--------EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence            688888887777  332        467889999999999732 233333445555544 58999999999644

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PTZ00262 subtilisin-like protease; Provisional

Probab=96.99  E-value=0.0007  Score=60.74  Aligned_cols=79  Identities=8%  Similarity=-0.180  Sum_probs=55.3

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .+||.||+..||....         +|+||+|+|..+|+|+.. .-+..+-+.|+.|.. +.++|.++|||...      
T Consensus       383 HVAGIIAA~gnN~~Gi---------~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~------  447 (639)
T PTZ00262        383 HVSGIISAIGNNNIGI---------VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE------  447 (639)
T ss_pred             HHHHHHhccccCCCce---------eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC------
Confidence            5899999988886644         446889999999999852 123333356666654 48999999998532      


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                       ......+|+.+..++|
T Consensus       448 -~s~~l~~AV~~A~~kG  463 (639)
T PTZ00262        448 -YSGIFNESVKYLEEKG  463 (639)
T ss_pred             -ccHHHHHHHHHHHHCC
Confidence             2234567777776665

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=96.95  E-value=0.00096  Score=52.62  Aligned_cols=83  Identities=11%  Similarity=-0.017  Sum_probs=54.7

Q ss_pred             hhhceeeccccC---CccccceeeeeEEEEeccCCcccceeecCC---CCCChHhhhhhccCCC-CcccEEeCCCCCCCC
Q psy13853         12 LTVLEIPLDAQN---PHLGSFRVLSFVVTTLHSRHVSSRIRMLDQ---PYMTDLIEANSMGHEP-NLIDIYSASWGPTDD   84 (108)
Q Consensus        12 ~~~geia~~~nN---~~cgvg~~~~f~~va~a~~AkI~GIRmL~g---~~vtd~~EA~ALsy~~-~~iDIYScSWGP~Dd   84 (108)
                      .+||.|+...+|   ..+.         .+++|+|+|-.+|+++.   ...++..-..++.+.. +.+||.++|||...+
T Consensus        87 ~vagiiag~~~~~~~~~~~---------~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~  157 (346)
T cd07475          87 HVAGIVAGNGDEEDNGEGI---------KGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAG  157 (346)
T ss_pred             HHHHHHhcCCCccccCCce---------EEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence            578888887776   2344         44788999999999973   1233333334444333 478999999998655


Q ss_pred             CCcccCcHHHHHHHHHHHHhcc
Q psy13853         85 GKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        85 G~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      ..   .+..+..+|+++..++|
T Consensus       158 ~~---~~~~~~~~~~~~a~~~g  176 (346)
T cd07475         158 FV---DLDDPEQQAIKRAREAG  176 (346)
T ss_pred             CC---CCCCHHHHHHHHHhhCC
Confidence            43   34445667777776665

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=96.79  E-value=0.0018  Score=49.51  Aligned_cols=68  Identities=12%  Similarity=-0.056  Sum_probs=46.1

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC--CChHhhhhhccCCC-CcccEEeCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY--MTDLIEANSMGHEP-NLIDIYSASWGPTDDG   85 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~--vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG   85 (108)
                      .+||.|+...+|..|.-+      ..+++|+++|-.+|+++.+.  .....-..++.+.. +.++|.++|||.....
T Consensus        59 ~vAgiia~~~~~~~~~~~------~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~  129 (293)
T cd04842          59 HVAGIIAGKGNDSSSISL------YKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN  129 (293)
T ss_pred             hhheeeccCCcCCCcccc------cccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc
Confidence            578999999999876222      35678999999999998731  11112223333332 3589999999987653

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=96.62  E-value=0.0026  Score=48.18  Aligned_cols=78  Identities=17%  Similarity=0.055  Sum_probs=48.6

Q ss_pred             hhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhh-hhhccCCC-CcccEEeCCCCCCCCCCcccC
Q psy13853         13 TVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIE-ANSMGHEP-NLIDIYSASWGPTDDGKTVDG   90 (108)
Q Consensus        13 ~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~E-A~ALsy~~-~~iDIYScSWGP~DdG~tvdg   90 (108)
                      ++|.|+...+|..+-         .+++|+++|-.+|+++.....+..+ .+++.+.. +.+||.+.|||..+       
T Consensus        74 vagii~~~~~~~~~~---------~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~-------  137 (260)
T cd07484          74 VAGIIAAATNNGTGV---------AGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL-------  137 (260)
T ss_pred             HHHHHhCccCCCCce---------EeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC-------
Confidence            455565555554332         4578999999999998632222221 23344433 46899999999876       


Q ss_pred             cHHHHHHHHHHHHhcc
Q psy13853         91 PRNATMRAIVRGVNET  106 (108)
Q Consensus        91 P~~L~~~Al~~Gv~~G  106 (108)
                      +..+..++++...++|
T Consensus       138 ~~~~~~~~~~~a~~~g  153 (260)
T cd07484         138 GSTALQEAINYAWNKG  153 (260)
T ss_pred             CCHHHHHHHHHHHHCC
Confidence            3345666776666555

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=96.61  E-value=0.0027  Score=49.77  Aligned_cols=67  Identities=10%  Similarity=0.003  Sum_probs=46.0

Q ss_pred             EEeccCCcccceeecCCC--CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         37 TTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      .+++|+++|--+|++...  ..+....++++.|.. +.+||.++|||+...-   ..+.....+|+++..++|
T Consensus        69 ~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~g  138 (267)
T cd07476          69 EGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQT---GEADPILANAVAMCQQNN  138 (267)
T ss_pred             eeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCC
Confidence            356889999999998652  123445566777776 4699999999975421   123455677887777665

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=96.53  E-value=0.0016  Score=48.30  Aligned_cols=77  Identities=12%  Similarity=0.047  Sum_probs=50.4

Q ss_pred             ccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHH
Q psy13853         25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG  102 (108)
Q Consensus        25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~G  102 (108)
                      .-|+|..++=+..+.+|+++|..+|+++... .+...-..++.|.. +.+||+++|||...+.     +.+..+++++..
T Consensus        43 ~~gHGT~vAgiia~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a  117 (222)
T cd07492          43 KDGHGTACAGIIKKYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-----DFPLLKELLEYA  117 (222)
T ss_pred             CCCcHHHHHHHHHccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-----cCHHHHHHHHHH
Confidence            4456644443334567899999999998731 23334456677666 6899999999987654     234455666666


Q ss_pred             Hhcc
Q psy13853        103 VNET  106 (108)
Q Consensus       103 v~~G  106 (108)
                      .++|
T Consensus       118 ~~~g  121 (222)
T cd07492         118 YKAG  121 (222)
T ss_pred             HHCC
Confidence            5543

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=96.48  E-value=0.0032  Score=48.46  Aligned_cols=87  Identities=17%  Similarity=0.054  Sum_probs=55.9

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+...|| .+++|-|.  ...+++|++++--+|+++.. ..++....+++.|.. +.+||.++|||......   
T Consensus        66 ~VAgiia~~~~~-~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~---  139 (273)
T cd07485          66 HVAGTIAAVNNN-GGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGI---  139 (273)
T ss_pred             HHHHHHHcccCC-Ccceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccc---
Confidence            467888776654 44433111  11337899999999999862 345555667776655 47999999999865321   


Q ss_pred             CcHHHHHHHHHHHHhc
Q psy13853         90 GPRNATMRAIVRGVNE  105 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~  105 (108)
                      - ....++|+...+++
T Consensus       140 ~-~~~~~~a~~~~~~~  154 (273)
T cd07485         140 Y-SPLLKDAFDYFIEN  154 (273)
T ss_pred             c-CHHHHHHHHHHHHh
Confidence            1 22456677776665

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=96.41  E-value=0.0042  Score=47.59  Aligned_cols=75  Identities=7%  Similarity=-0.028  Sum_probs=49.1

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC----CCChHhhhhhccCCC-CcccEEeCCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP----YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGK   86 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~----~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~   86 (108)
                      .+||.|+...+|.   .         +++|+++|-.+|+++..    ..+...-++++.|.. +.+||.++|||-+++  
T Consensus        41 ~vAgiia~~~~~~---~---------Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~--  106 (239)
T cd05561          41 AVASLLAGAGAQR---P---------GLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN--  106 (239)
T ss_pred             HHHHHHhCCCCCC---c---------ccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--
Confidence            4667777655553   2         36889999999999852    123333356677655 589999999985332  


Q ss_pred             cccCcHHHHHHHHHHHHhcc
Q psy13853         87 TVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        87 tvdgP~~L~~~Al~~Gv~~G  106 (108)
                            ....+|+++..++|
T Consensus       107 ------~~l~~ai~~a~~~g  120 (239)
T cd05561         107 ------ALLAAAVAAAAARG  120 (239)
T ss_pred             ------HHHHHHHHHHHHCC
Confidence                  34556777666654

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=96.37  E-value=0.0012  Score=49.54  Aligned_cols=85  Identities=12%  Similarity=-0.013  Sum_probs=54.2

Q ss_pred             hhhceeeccc-cCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC--CcccEEeCCCCCCCCCCcc
Q psy13853         12 LTVLEIPLDA-QNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP--NLIDIYSASWGPTDDGKTV   88 (108)
Q Consensus        12 ~~~geia~~~-nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~--~~iDIYScSWGP~DdG~tv   88 (108)
                      .++|.|+... +|..|..|         ++|+++|-.+|+++....+...-..++.+..  +.++|++.|||+.+ +...
T Consensus        51 ~va~ii~~~~~~~~~~~~G---------va~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~-~~~~  120 (282)
T PF00082_consen   51 HVAGIIAGNGGNNGPGING---------VAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNS-GPPD  120 (282)
T ss_dssp             HHHHHHHHTTSSSSSSETC---------SSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEE-SSSH
T ss_pred             hhhhhcccccccccccccc---------ccccccccccccccccccccccccchhhhhhhccCCccccccccccc-cccc
Confidence            5778888876 67777765         6889999999998883223333345566554  67899999999955 1111


Q ss_pred             cCcHHHHHHHHHHHHhcc
Q psy13853         89 DGPRNATMRAIVRGVNET  106 (108)
Q Consensus        89 dgP~~L~~~Al~~Gv~~G  106 (108)
                      ..-..+..++++...++|
T Consensus       121 ~~~~~~~~~~~~~~~~~g  138 (282)
T PF00082_consen  121 PSYSDILEEAIDYAEKKG  138 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccC
Confidence            111233445555555444

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=96.28  E-value=0.0063  Score=47.12  Aligned_cols=60  Identities=12%  Similarity=0.072  Sum_probs=40.8

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCC-hHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMT-DLIEANSMGHEP-NLIDIYSASWGPTD   83 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vt-d~~EA~ALsy~~-~~iDIYScSWGP~D   83 (108)
                      .|||.|+...++            ..+++|+++|..+|+++..... ...-.+++.|.. +.+||.++|||..+
T Consensus        50 ~VAGiIa~~~~~------------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~  111 (255)
T cd07479          50 FVAGVIASSREQ------------CLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD  111 (255)
T ss_pred             HHHHHHHccCCC------------ceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC
Confidence            467777764321            1356889999999999874222 222356676654 58999999999654

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=96.04  E-value=0.016  Score=41.10  Aligned_cols=80  Identities=16%  Similarity=0.039  Sum_probs=52.6

Q ss_pred             hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCC--CCcccEEeCCCCCCCCCCc
Q psy13853         11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHE--PNLIDIYSASWGPTDDGKT   87 (108)
Q Consensus        11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~--~~~iDIYScSWGP~DdG~t   87 (108)
                      ..|++.|+...++..+          .+++|+++|.-+|+++... .....-.+++.+.  .+..||.++|||.....  
T Consensus        48 t~va~~i~~~~~~~~~----------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--  115 (241)
T cd00306          48 THVAGIIAASANNGGG----------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--  115 (241)
T ss_pred             HHHHHHHhcCCCCCCC----------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--
Confidence            3567777776655443          3367899999999998831 2344445555555  47999999999986554  


Q ss_pred             ccCcHHHHHHHHHHHHhc
Q psy13853         88 VDGPRNATMRAIVRGVNE  105 (108)
Q Consensus        88 vdgP~~L~~~Al~~Gv~~  105 (108)
                         +.....+++.+..++
T Consensus       116 ---~~~~~~~~~~~~~~~  130 (241)
T cd00306         116 ---PSSALSEAIDYALAK  130 (241)
T ss_pred             ---CCHHHHHHHHHHHHh
Confidence               344445555555443

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=96.03  E-value=0.0099  Score=43.71  Aligned_cols=76  Identities=17%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC---ChHhhhhhccCCC-CcccEEeCCCCCCCCCCc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM---TDLIEANSMGHEP-NLIDIYSASWGPTDDGKT   87 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v---td~~EA~ALsy~~-~~iDIYScSWGP~DdG~t   87 (108)
                      .+||.|+...++ .+.         .+++|+++|-.+|+++....   .+..  .++.+.. +.++|.++|||..++.  
T Consensus        45 ~vA~ii~~~~~~-~~~---------~giap~a~i~~~~~~~~~~~~~~~~l~--~ai~~a~~~~~~Vin~S~g~~~~~--  110 (229)
T cd07477          45 HVAGIIAALDNG-VGV---------VGVAPEADLYAVKVLNDDGSGTYSDII--AGIEWAIENGMDIINMSLGGPSDS--  110 (229)
T ss_pred             HHHHHHhcccCC-Ccc---------EeeCCCCEEEEEEEECCCCCcCHHHHH--HHHHHHHHCCCCEEEECCccCCCC--
Confidence            466766665544 322         45789999999999986311   2333  3333322 4699999999975532  


Q ss_pred             ccCcHHHHHHHHHHHHhcc
Q psy13853         88 VDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        88 vdgP~~L~~~Al~~Gv~~G  106 (108)
                           ...+++++...++|
T Consensus       111 -----~~~~~~~~~a~~~g  124 (229)
T cd07477         111 -----PALREAIKKAYAAG  124 (229)
T ss_pred             -----HHHHHHHHHHHHCC
Confidence                 23456666665554

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=95.29  E-value=0.018  Score=44.73  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             ccccceeeeeEEEEeccCCcccceeecCCCC-------CChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcHHHHH
Q psy13853         25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-------MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATM   96 (108)
Q Consensus        25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-------vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~~L~~   96 (108)
                      -+|+|.-++=+-.+++|+++|-.+|+++...       .+...-++|+.|.. +.+||.++|||..... ..+.-....+
T Consensus        48 ~~gHGT~vAgiI~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~-~~~~~~~~l~  126 (247)
T cd07491          48 ADGHGTAMARMICRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE-DNDNDINELE  126 (247)
T ss_pred             CCCcHHHHHHHHHHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc-ccccchHHHH
Confidence            4566643222224678999999999998631       23344567888876 5899999999974321 1122244566


Q ss_pred             HHHHHHHhcc
Q psy13853         97 RAIVRGVNET  106 (108)
Q Consensus        97 ~Al~~Gv~~G  106 (108)
                      +|+++..++|
T Consensus       127 ~ai~~A~~~G  136 (247)
T cd07491         127 NAIKEALDRG  136 (247)
T ss_pred             HHHHHHHhCC
Confidence            7777777665

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=94.84  E-value=0.039  Score=41.74  Aligned_cols=61  Identities=16%  Similarity=0.035  Sum_probs=40.6

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCCCC------cccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEPN------LIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~~------~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++|+++|-.+|+++.+ ..+......++.|..+      .++|.++|||-..        .+...+++.+..++|
T Consensus        79 GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--------~~~~~~~~~~~~~~g  146 (255)
T cd04077          79 GVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--------STALDAAVAAAVNAG  146 (255)
T ss_pred             CcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--------CHHHHHHHHHHHHCC
Confidence            46889999999999874 2334444556655443      4799999999632        234455666665554

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=94.54  E-value=0.08  Score=41.50  Aligned_cols=47  Identities=11%  Similarity=-0.039  Sum_probs=32.8

Q ss_pred             EEeccCCcccceeecCC-CCCChHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853         37 TTLHSRHVSSRIRMLDQ-PYMTDLIEANSMGHEP-NLIDIYSASWGPTD   83 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g-~~vtd~~EA~ALsy~~-~~iDIYScSWGP~D   83 (108)
                      .++||+++|..+|+++. ...+...-..++.|.. +.+||.+.|||...
T Consensus       137 ~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~  185 (307)
T cd04852         137 SGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGS  185 (307)
T ss_pred             EEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence            47789999999999986 2223333334454433 58999999999754

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=92.98  E-value=0.051  Score=46.41  Aligned_cols=60  Identities=10%  Similarity=-0.015  Sum_probs=39.8

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCCh----HhhhhhccCCC-CcccEEeCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTD----LIEANSMGHEP-NLIDIYSASWGP   81 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd----~~EA~ALsy~~-~~iDIYScSWGP   81 (108)
                      .+||.||...+|..-         ..++||+|+|-.+|+++.. ...    ..-.+++.+.. ..+||.+.|||-
T Consensus       190 hVAGIIAg~~~~~~~---------~~GVAP~A~I~svkv~d~~-~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~  254 (412)
T cd04857         190 HVAGIAAAHFPEEPE---------RNGVAPGAQIVSIKIGDTR-LGSMETGTALVRAMIAAIETKCDLINMSYGE  254 (412)
T ss_pred             HHHHHHhCCCCCCCc---------eEEecCCCeEEEEEeccCC-CCCccchHHHHHHHHHHHHcCCCEEEecCCc
Confidence            478888887655332         2567899999999998762 221    11123343333 479999999995

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=88.77  E-value=0.27  Score=38.12  Aligned_cols=64  Identities=9%  Similarity=0.054  Sum_probs=39.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-----CCChHhhhhhccC----CCCcccEEeCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-----YMTDLIEANSMGH----EPNLIDIYSASWGPT   82 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-----~vtd~~EA~ALsy----~~~~iDIYScSWGP~   82 (108)
                      .+||.|+...+|....         .+++|+++|-.+|+|+..     ..+...=.+++.|    +.+.++|++-|||..
T Consensus        43 ~vAgiia~~~~~~~~~---------~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~  113 (291)
T cd04847          43 AVAGLALYGDLTLPGN---------GLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP  113 (291)
T ss_pred             HHHHHHHcCcccCCCC---------CCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence            4677787655442222         346889999999999873     1121111233333    234469999999986


Q ss_pred             CC
Q psy13853         83 DD   84 (108)
Q Consensus        83 Dd   84 (108)
                      ..
T Consensus       114 ~~  115 (291)
T cd04847         114 LP  115 (291)
T ss_pred             CC
Confidence            54

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04056 Peptidases_S53 Peptidase domain in the S53 family

Probab=85.90  E-value=1.4  Score=36.04  Aligned_cols=68  Identities=10%  Similarity=0.079  Sum_probs=42.3

Q ss_pred             EEeccCCcccceeecCCCCCChHhhh--hhccCCCCcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         37 TTLHSRHVSSRIRMLDQPYMTDLIEA--NSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~~vtd~~EA--~ALsy~~~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      .++||+++|--++..+.. .++...+  .++....+..+|-|+|||-...-.. +.-.....+++++...+|
T Consensus        84 ~gvAP~a~i~~~~~~~~~-~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~G  153 (361)
T cd04056          84 GAIAPGANITLYFAPGTV-TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQG  153 (361)
T ss_pred             HhccCCCeEEEEEECCcC-ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCC
Confidence            567899999999999762 3333332  3444444689999999997554321 111123345777776665

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=83.40  E-value=1.7  Score=34.42  Aligned_cols=41  Identities=12%  Similarity=-0.046  Sum_probs=30.0

Q ss_pred             EEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCC
Q psy13853         37 TTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGP   81 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP   81 (108)
                      .++||+++|.-.|..++  ..+.  +.++.|.. +.+||.+.|||-
T Consensus        59 ~GvAP~a~l~~~~~~~~--~~~i--~~ai~~a~~~g~~Vin~S~g~  100 (275)
T cd05562          59 HDIAPGAELAFHTAGGG--ELDF--AAAIRALAAAGADIIVDDIGY  100 (275)
T ss_pred             hccCCCCEEEEEecCCC--HHHH--HHHHHHHHHcCCCEEEecccc
Confidence            47899999998887654  4444  44555543 589999999985

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
1p8j_A	471	Crystal Structure Of The Proprotein Convertase Furi		2e-13
2id4_A	503	The 1.9 A Structure Of Kex2 In Complex With An Ac-R		2e-07
1r64_A	481	The 2.2 A Crystal Structure Of Kex2 Protease In Com		2e-07
1ot5_A	477	The 2.4 Angstrom Crystal Sructure Of Kex2 In Comple		2e-07

>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin Length = 471

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++ R
Sbjct: 117 VRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGR 175

>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An Ac-R-E-R-K-Chloromethyl Ketone Inhibitor. Length = 503

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 46  SRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 128 SGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 186
Query: 106 TR 107
            R
Sbjct: 187 GR 188

>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid Inhibitor Length = 481

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 46  SRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 121 SGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 179
Query: 106 TR 107
            R
Sbjct: 180 GR 181

>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With A Peptidyl- Boronic Acid Inhibitor Length = 477

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 46  SRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 119 SGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 177
Query: 106 TR 107
            R
Sbjct: 178 GR 179
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	5e-12
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	8e-12
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	5e-06

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471

 Score = 59.7 bits (144), Expect = 5e-12
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++ R
Sbjct: 117 VRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGR 175

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score = 59.0 bits (142), Expect = 8e-12
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           IR+L    +T   EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 130 IRILSGD-ITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.5
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	99.48
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	98.82
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	98.52
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	97.76
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	97.69
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	97.54
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	97.45
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	97.38
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	97.37
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	97.3
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	97.22
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	97.19
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	97.07
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	97.05
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	97.02
3t41_A	471	Epidermin leader peptide processing serine protea;	96.91
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	96.89
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	96.89
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	96.77
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	96.58
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	96.48
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	96.3
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	96.22
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	96.02
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	95.79
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	95.53
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	95.51
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	95.48
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	94.52
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	93.46
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	93.16
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	91.42
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	90.97

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=99.50  E-value=1.1e-14  Score=120.36  Aligned_cols=86  Identities=36%  Similarity=0.487  Sum_probs=79.8

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCcccCc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGP   91 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvdgP   91 (108)
                      .|||.||...+|..|++|         +||+|+|.++|+|++ ..++..++.+|.|..+..||+|+|||+.++++++++|
T Consensus       103 ~vAGiiaa~~~n~~~~~G---------vAp~a~i~~~rv~~~-~~~~~~~~~ai~~a~~~~~Iin~S~G~~~~~~~~~~~  172 (503)
T 2id4_A          103 RCAGEIAAKKGNNFCGVG---------VGYNAKISGIRILSG-DITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGP  172 (503)
T ss_dssp             HHHHHHHCCSSSSSSCCC---------TTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTTCSEEEECEESCCSSSCCBCC
T ss_pred             HHHHHHHhccCCCCCcEE---------ECCCCEEEEEEeeCC-CCChHHHHHHHHhHhhcCCEEEeCCCcCCCCccccCc
Confidence            589999999989999876         688999999999999 5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC
Q psy13853         92 RNATMRAIVRGVNETR  107 (108)
Q Consensus        92 ~~L~~~Al~~Gv~~GR  107 (108)
                      ..+..+|+++++++||
T Consensus       173 ~~~~~~a~~~a~~~~r  188 (503)
T 2id4_A          173 SDLVKKALVKGVTEGR  188 (503)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcc
Confidence            9999999999998755

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=99.48  E-value=1.7e-14  Score=117.83  Aligned_cols=86  Identities=45%  Similarity=0.635  Sum_probs=79.5

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCcccCc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGP   91 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvdgP   91 (108)
                      .|||.||...||..|.+|         +||+|+|.++|+|++ ..+|..||..+.++++.+||+++|||+.++++++++|
T Consensus        90 ~vAGiiaa~~~n~~g~~G---------vAp~a~i~~~rv~~g-~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~~~~~~  159 (471)
T 1p8j_A           90 RCAGEVAAVANNGVCGVG---------VAYNARIGGVRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGP  159 (471)
T ss_dssp             HHHHHHHCCSSSSSSCCC---------TTTTSEEEEEECSSS-CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCC
T ss_pred             HHHHHHHeeccCCCCCEE---------ECCCCeEEEEEccCC-chhHHHHHHHhhhccCCCeEEEeccCcCCCCCcccCc
Confidence            589999999999999876         688999999999999 5999999999888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC
Q psy13853         92 RNATMRAIVRGVNETR  107 (108)
Q Consensus        92 ~~L~~~Al~~Gv~~GR  107 (108)
                      ..+.++|++++++++|
T Consensus       160 ~~~~~~a~~~a~~~~~  175 (471)
T 1p8j_A          160 ARLAEEAFFRGVSQGR  175 (471)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999998755

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=98.82  E-value=1.5e-09  Score=89.96  Aligned_cols=65  Identities=14%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCCCCcccEEeCCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDGK   86 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~   86 (108)
                      -|||+||+ .+|.+|++|         +||+|||.++|+|+..   ..+|..+|.......+.+|||++|||+.....
T Consensus       118 hVAGiIAa-~~n~~g~~G---------VAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~  185 (600)
T 3hjr_A          118 SVSGIIAA-VDNAIGTKG---------IAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDP  185 (600)
T ss_dssp             HHHHHHHC-CSSSSSCCC---------SSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSC
T ss_pred             HHHHHHhE-eCCCCCcEE---------eCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCC
Confidence            48999998 578899876         6889999999999863   24566666666667789999999999976543

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=97.76  E-value=1.1e-05  Score=75.38  Aligned_cols=77  Identities=8%  Similarity=-0.032  Sum_probs=53.3

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCC----hHhhhhhccCC------CCcccEEeCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMT----DLIEANSMGHE------PNLIDIYSASWGP   81 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vt----d~~EA~ALsy~------~~~iDIYScSWGP   81 (108)
                      .|||.||... |..|..|         +||+|+|..+|+++.. ..    ....++++.+.      .+.+||+|+|||+
T Consensus       275 hVAGIIAa~~-N~~g~~G---------VAP~AkI~~vKVld~~-~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~  343 (1354)
T 3lxu_X          275 HVSSIASGNH-SSRDVDG---------VAPNAKIVSMTIGDGR-LGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGE  343 (1354)
T ss_dssp             HHHHHHCCCC-SSSSSCC---------SCTTCEEEEEECBCTT-TSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred             HHHHHHhcCC-CCCCcee---------ecCCCEEEEEEeccCC-CCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCcc
Confidence            5899999987 7788866         6889999999999873 22    22233333333      3489999999999


Q ss_pred             CCCCCcccCcHHHHHHHH
Q psy13853         82 TDDGKTVDGPRNATMRAI   99 (108)
Q Consensus        82 ~DdG~tvdgP~~L~~~Al   99 (108)
                      .++....+.+..+..+|+
T Consensus       344 ~~~~~~~~~l~~aI~~A~  361 (1354)
T 3lxu_X          344 HANWSNSGRIGELMNEVV  361 (1354)
T ss_dssp             CCSCSSCCHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHH
Confidence            876654554444444443

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=97.69  E-value=2.3e-05  Score=59.73  Aligned_cols=78  Identities=10%  Similarity=-0.041  Sum_probs=53.5

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+.. +|..+..|         ++|+++|..+|+++.. ..+...-.+++.|.. +.+||+++|||..++.    
T Consensus        65 ~vAgiia~~-~~~~~~~G---------vAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~~----  130 (269)
T 1gci_A           65 HVAGTIAAL-NNSIGVLG---------VAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPS----  130 (269)
T ss_dssp             HHHHHHHCC-CSSSBCCC---------SSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSCC----
T ss_pred             HHHHHHhcC-cCCCCcEE---------eCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCCC----
Confidence            478888885 67676654         7899999999999763 122233345565543 5799999999986642    


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                         ....+|+++..++|
T Consensus       131 ---~~~~~ai~~a~~~g  144 (269)
T 1gci_A          131 ---ATLEQAVNSATSRG  144 (269)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHCC
Confidence               23456777666655

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=97.54  E-value=5.5e-05  Score=57.80  Aligned_cols=79  Identities=13%  Similarity=-0.036  Sum_probs=54.7

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+...+|..+..         +++|+++|..+|+++.+ ..+...-++++.|.. +.+||.+.|||....     
T Consensus        75 ~vAgiia~~~~~~~g~~---------GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~-----  140 (280)
T 1dbi_A           75 HVAGIAAAETNNATGIA---------GMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCH-----  140 (280)
T ss_dssp             HHHHHHHCCCSSSSSCC---------CSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCC-----
T ss_pred             HHHHHHhCcCCCCCcce---------EeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-----
Confidence            58899999888866544         47899999999999752 123333345565544 579999999997532     


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                        .....+|+++..++|
T Consensus       141 --~~~~~~ai~~a~~~g  155 (280)
T 1dbi_A          141 --TTTLENAVNYAWNKG  155 (280)
T ss_dssp             --CHHHHHHHHHHHHTT
T ss_pred             --CHHHHHHHHHHHHCC
Confidence              234456777766665

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=97.45  E-value=5.4e-05  Score=65.90  Aligned_cols=78  Identities=13%  Similarity=0.039  Sum_probs=55.9

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCC-------CCCChHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQ-------PYMTDLIEANSMGHEP-NLIDIYSASWGPTD   83 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g-------~~vtd~~EA~ALsy~~-~~iDIYScSWGP~D   83 (108)
                      .|||.||.. +|+.+..|         +||+|+|..+|+++.       ...++..-++++.|.. +.+||.++|||...
T Consensus       203 hVAGiIAa~-~ng~gv~G---------VAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~  272 (671)
T 1r6v_A          203 HVAGTIAAK-KDGKGIVG---------VAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG  272 (671)
T ss_dssp             HHHHHHHCC-CSSSSCCC---------SCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred             hhhhhhhcc-CCCCceEE---------ECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence            589999986 56665544         688999999999975       1244555567776654 58999999999864


Q ss_pred             CCCcccCcHHHHHHHHHHHHhcc
Q psy13853         84 DGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        84 dG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      .       .....+|+++..++|
T Consensus       273 ~-------s~~l~~Ai~~A~~~G  288 (671)
T 1r6v_A          273 Y-------SYTMKEAFDYAMEHG  288 (671)
T ss_dssp             C-------CHHHHHHHHHHHHTT
T ss_pred             C-------CHHHHHHHHHHHhCC
Confidence            3       234567777777665

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=97.38  E-value=7e-05  Score=57.78  Aligned_cols=81  Identities=12%  Similarity=-0.072  Sum_probs=52.4

Q ss_pred             hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCC-----------CCcccEEeCCC
Q psy13853         11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHE-----------PNLIDIYSASW   79 (108)
Q Consensus        11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~-----------~~~iDIYScSW   79 (108)
                      -.|||.|+...+|..+-.|         ++|+|+|..+|+++....++..-++++.|.           .+.+||.+.||
T Consensus       106 T~vAgiia~~~~~~~g~~G---------vAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~~~~~~Vin~S~  176 (340)
T 3lpc_A          106 SHVAGTIAAVTNNRIGVAG---------VAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSL  176 (340)
T ss_dssp             HHHHHHHHCCCSSSSSCCC---------TTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCCSSCCSEEEECC
T ss_pred             HHHHHHHHccCCCCCccee---------ecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccccCCCeEEEeCc
Confidence            3689999998888665544         789999999999986322222223333322           36799999999


Q ss_pred             CCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         80 GPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        80 GP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      |....      +....++++++..++|
T Consensus       177 G~~~~------~~~~~~~~~~~a~~~g  197 (340)
T 3lpc_A          177 GSDGQ------CSYNAQTMIDRATRLG  197 (340)
T ss_dssp             CEESC------CCHHHHHHHHHHHHHT
T ss_pred             CCCCC------cchhHHHHHHHHHhCC
Confidence            97321      1233455666655554

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=97.37  E-value=0.00012  Score=55.85  Aligned_cols=79  Identities=16%  Similarity=0.003  Sum_probs=53.3

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+...+|..+-.         +++|+++|..+|+++.. ..+...-++++.|.. +.+||.++|||.....    
T Consensus        74 ~vAgiia~~~~n~~g~~---------GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~----  140 (279)
T 1thm_A           74 HCAGIAAAVTNNSTGIA---------GTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGN----  140 (279)
T ss_dssp             HHHHHHHCCCSSSSSCC---------CSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSCC----
T ss_pred             HHHHHHhCccCCCCccE---------EeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCCCC----
Confidence            58899998887765443         46899999999999752 122222344555543 5899999999986431    


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                         ....+|+++..++|
T Consensus       141 ---~~l~~ai~~a~~~g  154 (279)
T 1thm_A          141 ---SGLQQAVNYAWNKG  154 (279)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHCC
Confidence               23456777666655

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=97.30  E-value=0.0001  Score=55.70  Aligned_cols=81  Identities=11%  Similarity=-0.040  Sum_probs=55.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC--CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTV   88 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tv   88 (108)
                      .|||.|+...||.+-           ++||+|+|-.+|+++.+  ..++..-++++.|.. +.+||.++|||...+..  
T Consensus        54 ~VAGiiag~~~~~~~-----------GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~--  120 (282)
T 3zxy_A           54 HVASIIFGQPETSVP-----------GIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFG--  120 (282)
T ss_dssp             HHHHHHHCCTTSSSC-----------CSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS--
T ss_pred             ceeehhhccCCceee-----------eeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccc--
Confidence            578989887766443           35889999999998532  345555567777754 57999999999643322  


Q ss_pred             cCcHHHHHHHHHHHHhcc
Q psy13853         89 DGPRNATMRAIVRGVNET  106 (108)
Q Consensus        89 dgP~~L~~~Al~~Gv~~G  106 (108)
                       .+....++|++...++|
T Consensus       121 -~~~~~~~~ai~~a~~~g  137 (282)
T 3zxy_A          121 -EADGWLENAVSLCRQNN  137 (282)
T ss_dssp             -CCCHHHHHHHHHHHHTT
T ss_pred             -cccHHHHHHHHHHhhcC
Confidence             23345566777766654

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=97.22  E-value=9.8e-05  Score=56.13  Aligned_cols=78  Identities=10%  Similarity=-0.023  Sum_probs=52.0

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+.. +|..+..|         ++|+|+|-.+|+++.+. .+...-.+++.|.. +.+||.++|||....     
T Consensus        66 ~vAgiia~~-~~~~g~~G---------vAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~-----  130 (274)
T 1r0r_E           66 HVAGTVAAL-DNTTGVLG---------VAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG-----  130 (274)
T ss_dssp             HHHHHHHCC-SSSSBCCC---------SSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC-----
T ss_pred             HHHHHHHcc-CCCCceEE---------ECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----
Confidence            578888874 67666544         78999999999998631 12222234455433 579999999997543     


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                        .....+|+++..++|
T Consensus       131 --~~~~~~ai~~a~~~g  145 (274)
T 1r0r_E          131 --STAMKQAVDNAYARG  145 (274)
T ss_dssp             --CHHHHHHHHHHHHTT
T ss_pred             --cHHHHHHHHHHHHCC
Confidence              234556777766655

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=97.19  E-value=0.00011  Score=56.11  Aligned_cols=78  Identities=13%  Similarity=-0.022  Sum_probs=51.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+.. +|..+..|         ++|+|+|..+|+++.+. .+...-.+++.|.. +.+||.++|||....     
T Consensus        67 ~vAgiia~~-~~~~g~~G---------vAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~-----  131 (281)
T 1to2_E           67 HVAGTVAAL-NNSIGVLG---------VAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG-----  131 (281)
T ss_dssp             HHHHHHHCC-SSSSSBCC---------SSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSCC-----
T ss_pred             HHHHHHhcc-CCCCccee---------eCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCCC-----
Confidence            478888885 67666644         78999999999997631 11222233444433 579999999997543     


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                        .....+|+++..++|
T Consensus       132 --~~~~~~ai~~a~~~g  146 (281)
T 1to2_E          132 --SAALKAAVDKAVASG  146 (281)
T ss_dssp             --CHHHHHHHHHHHHTT
T ss_pred             --CHHHHHHHHHHHHCC
Confidence              234556777766655

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=97.07  E-value=0.00017  Score=56.33  Aligned_cols=76  Identities=12%  Similarity=0.021  Sum_probs=50.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCC-------CCcccEEeCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHE-------PNLIDIYSASWGP   81 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~-------~~~iDIYScSWGP   81 (108)
                      .|||.|+.. +|..+..|         +||+|+|..+|+++.+   ...+..+  ++.|.       .+.+||.+.|||.
T Consensus        89 ~VAgiia~~-~~~~g~~G---------vAp~a~l~~~kv~~~~g~~~~~~i~~--ai~~a~~~~~~~~~~~~Vin~S~G~  156 (327)
T 2x8j_A           89 HVAGTVAAA-ETGSGVVG---------VAPKADLFIIKALSGDGSGEMGWIAK--AIRYAVDWRGPKGEQMRIITMSLGG  156 (327)
T ss_dssp             HHHHHHHCC-CCSSBCCC---------SSTTCEEEEEECSCTTSEECHHHHHH--HHHHHHHCCCTTSCCCSEEEECEEB
T ss_pred             HHHHHHhcc-CCCCCcEe---------eCCCCEEEEEEeECCCCCcCHHHHHH--HHHHHHhhcccccCCceEEEECCCc
Confidence            478888875 56665544         7899999999999862   1223333  33332       2679999999997


Q ss_pred             CCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         82 TDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        82 ~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      ..+       .....+|+++..++|
T Consensus       157 ~~~-------~~~~~~ai~~a~~~g  174 (327)
T 2x8j_A          157 PTD-------SEELHDAVKYAVSNN  174 (327)
T ss_dssp             SCC-------CHHHHHHHHHHHHTT
T ss_pred             CCC-------CHHHHHHHHHHHHCC
Confidence            643       133456777766655

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=97.05  E-value=0.0001  Score=63.44  Aligned_cols=87  Identities=14%  Similarity=-0.007  Sum_probs=53.7

Q ss_pred             hhhceeeccccCC--ccccceeeeeE-EEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCc
Q psy13853         12 LTVLEIPLDAQNP--HLGSFRVLSFV-VTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKT   87 (108)
Q Consensus        12 ~~~geia~~~nN~--~cgvg~~~~f~-~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~t   87 (108)
                      .|||.||...+|+  ++|.+    .. ..++||+|+|..+|+++..-.++.+-.+|+.|.. +.+||.|.|||..+....
T Consensus       106 hVAgiiag~~~~~~~~~G~~----~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~  181 (649)
T 3i6s_A          106 HCASITAGNFAKGVSHFGYA----PGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPLY  181 (649)
T ss_dssp             HHHHHHHCCCEEEEEETTEE----EEEECCSSTTCEEEEEECEETTEECHHHHHHHHHHHHHTTCSEEEECCCCCSCCGG
T ss_pred             HHHHHHhCCCCcCccccccc----cCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccCCcccc
Confidence            4788888766553  33432    11 2578999999999999753233333345555554 689999999998754433


Q ss_pred             ccCcHHHHHHHHHHH
Q psy13853         88 VDGPRNATMRAIVRG  102 (108)
Q Consensus        88 vdgP~~L~~~Al~~G  102 (108)
                      .+.......+|.++|
T Consensus       182 ~~~i~~a~~~A~~~G  196 (649)
T 3i6s_A          182 EDAISIASFGAMMKG  196 (649)
T ss_dssp             GCHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhCC
Confidence            333233334455444

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=97.02  E-value=0.00014  Score=56.31  Aligned_cols=76  Identities=16%  Similarity=0.107  Sum_probs=50.2

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCC--------------------
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHE--------------------   68 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~--------------------   68 (108)
                      .|||.|+.. +|..+..|         ++|+++|..+|+++..   ..++..  +++.|.                    
T Consensus        78 ~vAgiia~~-~n~~g~~G---------vAp~a~l~~~~v~~~~g~~~~~~i~--~ai~~a~~~~~~~~~~~~~~~~~~~~  145 (320)
T 2z30_A           78 HVIGTIAAL-NNDIGVVG---------VAPGVQIYSVRVLDARGSGSYSDIA--IGIEQAILGPDGVADKDGDGIIAGDP  145 (320)
T ss_dssp             HHHHHHHCC-SSSBSCCC---------SSTTCEEEEEECSCTTSEEEHHHHH--HHHHHHHHTTTTCSCTTSSSCCTTCT
T ss_pred             HHHHHHHcc-cCCCceEe---------eCCCCEEEEEEeeCCCCCccHHHHH--HHHHHHHhCccccccccccccccccc
Confidence            578888885 66666544         7899999999999752   122332  333221                    


Q ss_pred             -CCcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         69 -PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        69 -~~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                       .+.+||.++|||...+       .....+|+++..++|
T Consensus       146 ~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  177 (320)
T 2z30_A          146 DDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAG  177 (320)
T ss_dssp             TSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTT
T ss_pred             ccCCceEEEecCCCCCC-------CHHHHHHHHHHHHCC
Confidence             2489999999997553       234556777766655

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=96.91  E-value=0.00048  Score=55.40  Aligned_cols=70  Identities=11%  Similarity=0.021  Sum_probs=42.8

Q ss_pred             EEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCC-CCCCCcccC--------cHHHHHHHHHHHHhcc
Q psy13853         37 TTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGP-TDDGKTVDG--------PRNATMRAIVRGVNET  106 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP-~DdG~tvdg--------P~~L~~~Al~~Gv~~G  106 (108)
                      .++||+|+|..+|+++....++..-..++.|.. +.+||++.|||. ..++.+.++        ......+|+++..++|
T Consensus       216 ~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~G  295 (471)
T 3t41_A          216 IGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKK  295 (471)
T ss_dssp             BCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTT
T ss_pred             eEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCC
Confidence            457899999999999863233322334444433 579999999995 222222222        2234556777776665

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=96.89  E-value=0.00023  Score=56.65  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCC--------------------
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHE--------------------   68 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~--------------------   68 (108)
                      .|||.|+.. +|..+..         +++|+++|..+|+++..   ..++..  +++.|.                    
T Consensus       153 ~vAgiia~~-~n~~g~~---------GvAp~a~l~~~kv~~~~g~~~~~~i~--~ai~~a~~~~~~~~~~~~~~~~~~~~  220 (395)
T 2z2z_A          153 HVIGTIAAL-NNDIGVV---------GVAPGVQIYSVRVLDARGSGSYSDIA--IGIEQAILGPDGVADKDGDGIIAGDP  220 (395)
T ss_dssp             HHHHHHHCC-CSSSSCC---------CSSTTCEEEEEECSCTTSEEEHHHHH--HHHHHHHHTTTTCSSTTCSSCCTTCT
T ss_pred             HHHHHHHee-cCCCceE---------EECCCCEEEEEEEecCCCCccHHHHH--HHHHHHHhCccccccccccccccccc
Confidence            478988886 6666554         47899999999999752   122333  333322                    


Q ss_pred             -CCcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         69 -PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        69 -~~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                       .+.+||.+.|||...+       .....+|+++..++|
T Consensus       221 ~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  252 (395)
T 2z2z_A          221 DDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAG  252 (395)
T ss_dssp             TSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEecCCCCCC-------CHHHHHHHHHHHHCC
Confidence             2379999999997543       233456777666655

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=96.89  E-value=0.00041  Score=52.95  Aligned_cols=79  Identities=11%  Similarity=-0.042  Sum_probs=51.4

Q ss_pred             hhhceeeccc-cCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCCC-c-----ccEEeCCCCCCC
Q psy13853         12 LTVLEIPLDA-QNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEPN-L-----IDIYSASWGPTD   83 (108)
Q Consensus        12 ~~~geia~~~-nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~~-~-----iDIYScSWGP~D   83 (108)
                      .|||.|+... +|..+-         .+++|+|+|..+|+++.. ..+...-+++|.|..+ .     .||.+.|||...
T Consensus        74 ~vAgiia~~~~~n~~g~---------~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~  144 (310)
T 2ixt_A           74 HVAGTALADGGSDQAGI---------YGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA  144 (310)
T ss_dssp             HHHHHHHCBCCTTSCSC---------BCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS
T ss_pred             HHHHHHhccCCCCCCce---------EEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCC
Confidence            4788887764 454433         347899999999999752 2233344556665443 2     399999999865


Q ss_pred             CCCcccCcHHHHHHHHHHHHhcc
Q psy13853         84 DGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        84 dG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +       .....+|+++..++|
T Consensus       145 ~-------~~~~~~ai~~a~~~g  160 (310)
T 2ixt_A          145 N-------NSLISSAVNYAYSKG  160 (310)
T ss_dssp             C-------CHHHHHHHHHHHHTT
T ss_pred             C-------CHHHHHHHHHHHhCC
Confidence            4       234556777766655

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=96.77  E-value=0.00097  Score=51.73  Aligned_cols=76  Identities=12%  Similarity=-0.061  Sum_probs=49.8

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCC-------cccEEeCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPN-------LIDIYSASWGPTDD   84 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~-------~iDIYScSWGP~Dd   84 (108)
                      .|||.|+..  ..+           .++||+|+|..+|+++.....+.  ++++.|..+       .+||++.|||....
T Consensus        92 ~vAgiia~~--~g~-----------~GvAp~a~l~~~~v~~~~~~~~~--~~ai~~a~~~~~~~~~~~~Vin~S~G~~~~  156 (347)
T 2iy9_A           92 AMASLIASR--YGI-----------YGVYPHALISSRRVIPDGVQDSW--IRAIESIMSNVFLAPGEEKIINISGGQKGV  156 (347)
T ss_dssp             HHHHHHHCS--SSS-----------CCSSTTCEEEEEECCSSBCTTHH--HHHHHHHHTCTTSCTTEEEEEEESSCBCCC
T ss_pred             HHHHHHhcc--cCC-----------cccCCCCEEEEEEEecCCCHHHH--HHHHHHHHhhhhcccCCceEEEeccccCCC
Confidence            467777775  212           34689999999999976323344  444444332       69999999996432


Q ss_pred             CCcccCcHHHHHHHHHHHHhcc
Q psy13853         85 GKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        85 G~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                          ..+.....+|++...++|
T Consensus       157 ----~~~~~~~~~ai~~a~~~g  174 (347)
T 2iy9_A          157 ----ASASVWTELLSRMGRNND  174 (347)
T ss_dssp             -----CCHHHHHHHHHHHHHTS
T ss_pred             ----CCcCHHHHHHHHHHHhCC
Confidence                234556677887777665

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=96.58  E-value=0.00085  Score=50.83  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=54.5

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC--CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTV   88 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tv   88 (108)
                      .|||.|+...||.+.           ++||+|+|..+|++..+  ..++..-++++.|.. +..||+++|||-..+..  
T Consensus        67 hVAGiiag~~~~~~~-----------GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~--  133 (306)
T 4h6w_A           67 HVASIIFGQHDSPVT-----------GIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAG--  133 (306)
T ss_dssp             HHHHHHHCCTTSSSC-----------CSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS--
T ss_pred             HHHHHHHccccCCcc-----------eeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCC--
Confidence            478999887666443           35889999999998542  244544566777654 57999999998533221  


Q ss_pred             cCcHHHHHHHHHHHHhcc
Q psy13853         89 DGPRNATMRAIVRGVNET  106 (108)
Q Consensus        89 dgP~~L~~~Al~~Gv~~G  106 (108)
                       .+.....+|+++..++|
T Consensus       134 -~~~~~~~~ai~~a~~~g  150 (306)
T 4h6w_A          134 -EADTWLEKAIQLCQENN  150 (306)
T ss_dssp             -CCCHHHHHHHHHHHHTT
T ss_pred             -CccHHHHHHHHHHHHcC
Confidence             23345667777776665

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=96.48  E-value=0.00086  Score=52.78  Aligned_cols=81  Identities=10%  Similarity=0.001  Sum_probs=45.0

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC------CCChHhhhhhccCCC-CcccEEeCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP------YMTDLIEANSMGHEP-NLIDIYSASWGPTDD   84 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~------~vtd~~EA~ALsy~~-~~iDIYScSWGP~Dd   84 (108)
                      .|||.||...||.+           .++||+|+|..+|++...      ..+...-+.++.|.. +.+||.++|||-...
T Consensus       112 hVAGiiag~~~~g~-----------~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~  180 (357)
T 4h6x_A          112 HVTSTIVGQEHSPV-----------FGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQ  180 (357)
T ss_dssp             HHHHHHHCCTTSSC-----------CCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSEEEEC------
T ss_pred             HHHHHHhccCCCCc-----------eEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCEEeeccccCCc
Confidence            57899988766643           346889999999987431      122223345566654 578999999995332


Q ss_pred             CCcccCcHHHHHHHHHHHHhcc
Q psy13853         85 GKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        85 G~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      ..   .......+|+++..++|
T Consensus       181 ~~---~~~~~~~~ai~~a~~~g  199 (357)
T 4h6x_A          181 TS---EGEEILVQAIKKCQDNN  199 (357)
T ss_dssp             --------CHHHHHHHHHHHTT
T ss_pred             cc---cchhHHHHHHHHHhhCC
Confidence            11   11223456666666554

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=96.30  E-value=0.0012  Score=50.24  Aligned_cols=61  Identities=13%  Similarity=0.016  Sum_probs=41.4

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCCC---CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~---~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++|+++|..+|+++.. ..+...-.+++.|..   +.+||.+.|||...        .....+|+++..++|
T Consensus        86 GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~--------~~~~~~ai~~a~~~g  150 (278)
T 2b6n_A           86 GVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA--------SQATDDAVNAAVAAG  150 (278)
T ss_dssp             CSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--------CHHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc--------CHHHHHHHHHHHHCC
Confidence            46899999999999752 123333345555543   47999999999754        234566777776665

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=96.22  E-value=0.00079  Score=56.45  Aligned_cols=83  Identities=8%  Similarity=-0.038  Sum_probs=48.6

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-----CcccEEeCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-----NLIDIYSASWGPTDDG   85 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-----~~iDIYScSWGP~DdG   85 (108)
                      -|||.|+...+|.....        .++||+|+|..+|+|+..- -+..+-.+++.|..     +.+||.+.|||.....
T Consensus       183 hVAgiiag~~~~~~g~~--------~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~  254 (539)
T 3afg_A          183 HVASIAAGTGAASNGKY--------KGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSS  254 (539)
T ss_dssp             HHHHHHHCCCGGGTTTT--------CCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCC
T ss_pred             HHHHHHhCcCccCCCCE--------EEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCC
Confidence            46788877554422111        3578999999999998621 11222234444432     3689999999986542


Q ss_pred             CcccCcHHHHHHHHHHHHhcc
Q psy13853         86 KTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        86 ~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      .    ......+|+.+..++|
T Consensus       255 ~----~~~~l~~ai~~a~~~G  271 (539)
T 3afg_A          255 D----GTDSLSQAVNNAWDAG  271 (539)
T ss_dssp             C----SCSHHHHHHHHHHHTT
T ss_pred             c----cchHHHHHHHHHHhcC
Confidence            1    1122345566555554

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=96.02  E-value=0.0047  Score=49.77  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=49.9

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCC--cccceeecCCC---CCChHhhhhhccCCCCcccEEeCCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRH--VSSRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDGK   86 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~A--kI~GIRmL~g~---~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~   86 (108)
                      .|||.|+...|| ..-         .+++|+|  +|..+|+++.+   ...+..+|-..-.+...+||.+.|||....- 
T Consensus        68 ~vAgiia~~~~~-~g~---------~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~~~~-  136 (441)
T 1y9z_A           68 HVAGTIAAIANN-EGV---------VGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGST-  136 (441)
T ss_dssp             HHHHHHHCCCSS-SBC---------CCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCCB-
T ss_pred             HHHHHHhcccCC-CCc---------eEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC-
Confidence            578888886644 322         4467774  89999999642   3455544433323323799999999975431 


Q ss_pred             cccCcHHHHHHHHHHHHhcc
Q psy13853         87 TVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        87 tvdgP~~L~~~Al~~Gv~~G  106 (108)
                            ....+|+.+..++|
T Consensus       137 ------~~~~~ai~~a~~~g  150 (441)
T 1y9z_A          137 ------TTERNALNTHYNNG  150 (441)
T ss_dssp             ------HHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHHHCC
Confidence                  23456777777766

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=95.79  E-value=0.0033  Score=48.03  Aligned_cols=61  Identities=13%  Similarity=-0.023  Sum_probs=39.8

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCCCC--------cccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEPN--------LIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~~--------~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++|+++|..+|+++.+ ..+...-.+++.|..+        .+||.+.|||...        .....+|+++..++|
T Consensus        83 GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~~--------~~~~~~ai~~a~~~g  152 (279)
T 2pwa_A           83 GVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGY--------SSSVNSAAARLQSSG  152 (279)
T ss_dssp             CSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--------CHHHHHHHHHHHHTT
T ss_pred             ccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCCC--------CHHHHHHHHHHHHCC
Confidence            46899999999999863 1233333445554432        3499999999643        234566777766655

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=95.53  E-value=0.0049  Score=46.41  Aligned_cols=61  Identities=11%  Similarity=-0.024  Sum_probs=40.6

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCCC---CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~---~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++|+++|..+|+++.+ ..+...-.+++.|..   ..+||.+.|||-..        .....+|+++..++|
T Consensus        84 GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~--------~~~~~~a~~~a~~~g  148 (276)
T 4dzt_A           84 GVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV--------STALDNAVKNSIAAG  148 (276)
T ss_dssp             CSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--------CHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--------CHHHHHHHHHHHhCC
Confidence            46899999999999853 133333344555433   37999999999532        234556777766665

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=95.51  E-value=0.0081  Score=53.34  Aligned_cols=84  Identities=11%  Similarity=-0.061  Sum_probs=50.1

Q ss_pred             hhhceeeccc----cCCccccceeeeeEEEEeccCCcccceeecCCCCC--ChHhhhhhccCCC-CcccEEeCCCCCCCC
Q psy13853         12 LTVLEIPLDA----QNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM--TDLIEANSMGHEP-NLIDIYSASWGPTDD   84 (108)
Q Consensus        12 ~~~geia~~~----nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v--td~~EA~ALsy~~-~~iDIYScSWGP~Dd   84 (108)
                      -|||.||...    +|..+-         .++||+|+|..+|+++....  .+.+-+.|+.+.. +.+||.|.|||....
T Consensus        91 hVAgiiAg~~~~~~~~~~~~---------~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~  161 (926)
T 1xf1_A           91 HVSGILSGNAPSETKEPYRL---------EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAAL  161 (926)
T ss_dssp             HHHHSSCCCCCCCCSCSCCT---------TTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEEEECCSSCCC
T ss_pred             HHHHHHhCCCccCcccCCce---------EEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEEEECCCCCCC
Confidence            4677777644    232222         45789999999999986311  1122234555543 578999999997543


Q ss_pred             CCcccCcHHHHHHHHHHHHhcc
Q psy13853         85 GKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        85 G~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      . .-+.+. ...+|+....++|
T Consensus       162 ~-~~~~~~-~~~~ai~~A~~~G  181 (926)
T 1xf1_A          162 A-YANLPD-ETKKAFDYAKSKG  181 (926)
T ss_dssp             T-TCCCCH-HHHHHHHHHHHTT
T ss_pred             C-cccccc-HHHHHHHHHHhCC
Confidence            2 112223 3355666666665

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=95.48  E-value=0.0062  Score=46.63  Aligned_cols=61  Identities=11%  Similarity=-0.003  Sum_probs=41.8

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCCC---CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~---~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++|+++|..+|+++.. ..+...-.+++.|..   +.+||.+.|||...        .....+|+++..++|
T Consensus        84 GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~--------~~~~~~ai~~a~~~g  148 (284)
T 1sh7_A           84 GVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ--------STALDSAVQGAIQSG  148 (284)
T ss_dssp             CSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC--------CHHHHHHHHHHHHTT
T ss_pred             CcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC--------CHHHHHHHHHHHHCC
Confidence            46899999999999752 123334455566543   35899999999863        234566777766665

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=94.52  E-value=0.014  Score=43.95  Aligned_cols=61  Identities=15%  Similarity=-0.010  Sum_probs=39.4

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCCC--------CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP--------NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~--------~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++|+++|..+|+++.+ ..+...-.+++.|..        ..+||++.|||..        ......+|+++..++|
T Consensus        84 GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~--------~~~~~~~a~~~a~~~g  153 (279)
T 3f7m_A           84 GVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--------YSAALNQAAARLQSSG  153 (279)
T ss_dssp             CSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE--------CCHHHHHHHHHHHHTT
T ss_pred             ccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC--------ccHHHHHHHHHHHHCC
Confidence            47899999999999863 122233334444432        2489999999953        2345566777766665

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=93.46  E-value=0.033  Score=44.51  Aligned_cols=47  Identities=15%  Similarity=0.175  Sum_probs=32.4

Q ss_pred             EEeccCCcccceeecCCC-C----CChHhhhhhccCCC-CcccEEeCCCCCCCCC
Q psy13853         37 TTLHSRHVSSRIRMLDQP-Y----MTDLIEANSMGHEP-NLIDIYSASWGPTDDG   85 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~-~----vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG   85 (108)
                      .++||+|+|..+|+++.. .    ..+..+  ++.|.. +.++|.+.|||...++
T Consensus        84 ~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~--ai~~a~~~g~~Vin~S~G~~~~~  136 (434)
T 1wmd_A           84 KGMAPQANLVFQSIMDSGGGLGGLPSNLQT--LFSQAYSAGARIHTNSWGAAVNG  136 (434)
T ss_dssp             CCSSTTSEEEEEECCCTTSSCTTSCSSHHH--HHHHHHHTTCSEEEECCCBCCTT
T ss_pred             eeeCCCCEEEEEEeecCCCccccccHHHHH--HHHHHHhcCCeEEEecCCCCcCC
Confidence            347899999999999763 1    123433  333332 5789999999987643

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=93.16  E-value=0.015  Score=49.84  Aligned_cols=61  Identities=10%  Similarity=-0.137  Sum_probs=39.5

Q ss_pred             EeccCCcccceeecCCC-CCChHhhhhhccCC-------CCcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHE-------PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~-------~~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      ++||+++|..+|+|+.+ .-+...-.++|.|.       .+.++|.+.|||...        .....+|+++..++|
T Consensus        88 GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~~--------s~~l~~Ai~~A~~~G  156 (546)
T 2qtw_B           88 GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY--------SRVLNAACQRLARAG  156 (546)
T ss_dssp             CSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEEC--------CHHHHHHHHHHHHTT
T ss_pred             CcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCCC--------cHHHHHHHHHHHhCC
Confidence            46899999999999852 11222223344433       347899999998632        245566777777665

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=91.42  E-value=0.031  Score=47.30  Aligned_cols=56  Identities=11%  Similarity=-0.095  Sum_probs=38.0

Q ss_pred             EEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcH
Q psy13853         37 TTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPR   92 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~   92 (108)
                      .++||+|+|.-+|++....-++.+-..++.+.. +..||.|.|||-.......+.|-
T Consensus       121 ~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~  177 (621)
T 3vta_A          121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI  177 (621)
T ss_dssp             CCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTH
T ss_pred             EEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHH
Confidence            478999999999999764233444445555544 58999999999755443334443

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=90.97  E-value=0.042  Score=48.32  Aligned_cols=43  Identities=5%  Similarity=-0.071  Sum_probs=0.0

Q ss_pred             EEeccCCcccceeecCCC---CCChHhhhhhccCCCC-------cccEEeCCCCC
Q psy13853         37 TTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHEPN-------LIDIYSASWGP   81 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~~~-------~iDIYScSWGP   81 (108)
                      .++||+++|..+|+|+..   ..++.  ..++.|..+       ..||.+.|||.
T Consensus       239 ~GVAP~A~L~~vKVl~~~G~g~~s~i--i~aI~~a~~~~~~~~~g~~VINmSlGg  291 (692)
T 2p4e_P          239 AGVAKGASMRSLRVLNCQGKGTVSGT--LIGLEFIRKSQLVQPVGPLVVLLPLAG  291 (692)
T ss_dssp             -------------------------------------------------------
T ss_pred             CccCCCCEEEEEEeecCCCCCCHHHH--HHHHHHHHhhhhcccCCceEEEecCCC
Confidence            467899999999999741   23344  345555433       68999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d2id4a2	339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	0.001
d1p8ja2	334	c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou	0.004

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 42  RHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVR 101
               S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+
Sbjct: 116 NAKISGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVK 174

Query: 102 GVNETR 107
           GV E R
Sbjct: 175 GVTEGR 180

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (74), Expect = 0.004
 Identities = 31/68 (45%), Positives = 39/68 (57%)

Query: 40  HSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAI 99
            + +       +    +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A 
Sbjct: 107 VAYNARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAF 166

Query: 100 VRGVNETR 107
            RGV++ R
Sbjct: 167 FRGVSQGR 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	98.43
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	98.3
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	97.24
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	97.19
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	96.58
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	95.67
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	94.93
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	94.26
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	93.77
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	93.11
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	92.91
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	91.61
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	88.99

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=1.4e-07  Score=68.74  Aligned_cols=82  Identities=44%  Similarity=0.587  Sum_probs=70.8

Q ss_pred             hhhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCccc
Q psy13853         10 HYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        10 ~~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvd   89 (108)
                      .-.++|.|+...+|..+..|         .+|++++.++|.+++ ...+..|+.++.++.+.++++++|||+.+.+..++
T Consensus        87 GT~vAgiia~~~~n~~~~~g---------~a~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~~~  156 (334)
T d1p8ja2          87 GTRCAGEVAAVANNGVCGVG---------VAYNARIGGVRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVD  156 (334)
T ss_dssp             HHHHHHHHHCCSSSSSSCCC---------TTTTSEEEEEECSSS-CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCB
T ss_pred             hhhhhhhhhhcccccccccc---------ccccccccchhhccc-cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcccC
Confidence            45689999998888888755         678999999999999 59999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHH
Q psy13853         90 GPRNATMRAIVR  101 (108)
Q Consensus        90 gP~~L~~~Al~~  101 (108)
                      +|..+....+..
T Consensus       157 ~~~~~~~~~~~~  168 (334)
T d1p8ja2         157 GPARLAEEAFFR  168 (334)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CccchhhHHHHH
Confidence            998766654443

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=2.6e-07  Score=67.81  Aligned_cols=84  Identities=35%  Similarity=0.455  Sum_probs=72.2

Q ss_pred             hhhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCccc
Q psy13853         10 HYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        10 ~~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvd   89 (108)
                      +--++|.|+...|+..|+.|         ++|++++.++|.+++ ...+.....++.+..+.++|+++|||+.+++..++
T Consensus        93 GT~vag~iaa~~~~~~~~~G---------vap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~s~g~~~~~~~~~  162 (339)
T d2id4a2          93 GTRCAGEIAAKKGNNFCGVG---------VGYNAKISGIRILSG-DITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQ  162 (339)
T ss_dssp             HHHHHHHHHCCSSSSSSCCC---------TTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTTCSEEEECEESCCSSSCCB
T ss_pred             cceeeecccccccccccccc---------cccccccceEEEeec-cccchHHHHHHHHHHhhCCEEeccCCCCCCccccc
Confidence            44678899998888889866         688999999999999 58888888999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHH
Q psy13853         90 GPRNATMRAIVRGV  103 (108)
Q Consensus        90 gP~~L~~~Al~~Gv  103 (108)
                      ++..+...++..-.
T Consensus       163 ~~~~~~~~a~~~~~  176 (339)
T d2id4a2         163 GPSDLVKKALVKGV  176 (339)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHH
Confidence            98877776665543

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=97.24  E-value=4.6e-05  Score=63.02  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=56.7

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecC--------CCCCChHhhhhhccCCC-CcccEEeCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLD--------QPYMTDLIEANSMGHEP-NLIDIYSASWGPT   82 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~--------g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~   82 (108)
                      .|||.||... |..+..         ++||+|||..+|+++        + ..++..-++++.|.. +.+||.++|||..
T Consensus       203 ~VAGiiaa~~-~~~g~~---------GvAp~a~l~~~rv~~~~~~~~~~g-~~~~~~i~~ai~~a~~~g~~Vin~S~g~~  271 (671)
T d1r6va_         203 HVAGTIAAKK-DGKGIV---------GVAPGAKIMPIVIFDDPALVGGNG-YVGDDYVAAGIIWATDHGAKVMNHSWGGW  271 (671)
T ss_dssp             HHHHHHHCCC-SSSSCC---------CSCTTSEEEEEESBCCHHHHCTTS-BCCHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred             cccceeeeec-ccccee---------eecCcceEEEEEecccccccCCCC-cccHHHHHHHHHHHHhCCCcEEecccccc
Confidence            5799998855 445544         478899999999995        4 467777788888876 4799999999864


Q ss_pred             CCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         83 DDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        83 DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      .       +....++|+.+..++|
T Consensus       272 ~-------~~~~~~~ai~~a~~~g  288 (671)
T d1r6va_         272 G-------YSYTMKEAFDYAMEHG  288 (671)
T ss_dssp             C-------CCHHHHHHHHHHHHTT
T ss_pred             c-------CChHHHHHHHHHHhcc
Confidence            3       2334566777776666

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=97.19  E-value=0.00012  Score=53.53  Aligned_cols=64  Identities=13%  Similarity=-0.085  Sum_probs=47.9

Q ss_pred             hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853         11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTD   83 (108)
Q Consensus        11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~D   83 (108)
                      -.++|.|+...+|..+..|         +||+|+|..+|+++.+ ..+...-++++.|.. +.+||.++|||...
T Consensus        74 T~vag~i~~~~~~~~~~~G---------vAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~  139 (280)
T d1dbia_          74 THVAGIAAAETNNATGIAG---------MAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC  139 (280)
T ss_dssp             HHHHHHHHCCCSSSSSCCC---------SSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC
T ss_pred             cceeEeeeccccCCCceeE---------EeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc
Confidence            4578888888888777765         6889999999999753 234444456666654 57999999999854

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=96.58  E-value=0.00075  Score=48.31  Aligned_cols=64  Identities=17%  Similarity=-0.041  Sum_probs=47.7

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDD   84 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~Dd   84 (108)
                      .++|.|+...+|..+..|         +||+|+|-.+|+++.. .-+...-..++.+.. +.++|+++|||....
T Consensus        74 ~vag~i~~~~~~~~~~~G---------vAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~~  139 (279)
T d1thma_          74 HCAGIAAAVTNNSTGIAG---------TAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVG  139 (279)
T ss_dssp             HHHHHHHCCCSSSSSCCC---------SSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred             ccceeeeeccCCCccccc---------cCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCcccc
Confidence            578999998888777755         6899999999998653 233334455666655 579999999998653

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=95.67  E-value=0.0018  Score=46.35  Aligned_cols=78  Identities=13%  Similarity=-0.011  Sum_probs=50.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC-ChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM-TDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD   89 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v-td~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd   89 (108)
                      .|||.|+.. +|..+..|         ++|+|+|..+|+++.+.. +...-.+++.|.. +.++|.++|||..+.-    
T Consensus        67 ~vAgiiag~-~~~~~~~g---------iAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~~~----  132 (281)
T d1to2e_          67 HVAGTVAAL-NNSIGVLG---------VAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGS----  132 (281)
T ss_dssp             HHHHHHHCC-SSSSSBCC---------SSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSCCC----
T ss_pred             eeecccccC-CCCCCcce---------eecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCCcch----
Confidence            478888774 56677655         678999999999976311 2222234555554 5899999999975433    


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy13853         90 GPRNATMRAIVRGVNET  106 (108)
Q Consensus        90 gP~~L~~~Al~~Gv~~G  106 (108)
                         .....++.....+|
T Consensus       133 ---~~~~~ai~~~~~~g  146 (281)
T d1to2e_         133 ---AALKAAVDKAVASG  146 (281)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHhcC
Confidence               22345666555554

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=94.93  E-value=0.0075  Score=45.62  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCCCCcccEEeCCCCCCCCCCcc
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTV   88 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tv   88 (108)
                      .|||.||...||.  |      +.|||..++++|..+|.+...   ...+..+|-....+.+..||.++|||....    
T Consensus        68 hvAgiiag~~~~~--g------~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~~----  135 (435)
T d1v6ca_          68 HVAGTIAAIANNE--G------VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS----  135 (435)
T ss_dssp             HHHHHHHCCCSSS--B------CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC----
T ss_pred             HHHHHHhccCCCC--c------eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCCC----
Confidence            5788888877552  2      223444448999999987542   244454443333345678999999998532    


Q ss_pred             cCcHHHHHHHHHHHHhccC
Q psy13853         89 DGPRNATMRAIVRGVNETR  107 (108)
Q Consensus        89 dgP~~L~~~Al~~Gv~~GR  107 (108)
                         ..+..+|++...++|+
T Consensus       136 ---~~~~~~a~~~~~~~g~  151 (435)
T d1v6ca_         136 ---TTTERNALNTHYNNGV  151 (435)
T ss_dssp             ---BHHHHHHHHHHHHTTC
T ss_pred             ---CHHHHhhhhhccccce
Confidence               2345667777777664

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=94.26  E-value=0.0021  Score=47.81  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             EEeccCCcccceeecCCC-CCChHhhhhhccCC--CCcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853         37 TTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHE--PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~--~~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      +++||++++--++.++.. ..++..=.+++.|.  .+..||.|+|||..+.....+.......++++++..+|
T Consensus        88 ~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G  160 (369)
T d1ga6a_          88 VGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG  160 (369)
T ss_dssp             HHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred             cccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHHHHHHHHHHCC
Confidence            467899999999988752 12333333556554  35689999999986544444455555667888877766

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=93.77  E-value=0.023  Score=40.20  Aligned_cols=62  Identities=11%  Similarity=-0.064  Sum_probs=42.1

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC-ChHhhhhhccCC-CCcccEEeCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM-TDLIEANSMGHE-PNLIDIYSASWGPTD   83 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v-td~~EA~ALsy~-~~~iDIYScSWGP~D   83 (108)
                      .|||.|+... |..++.|         ++|+++|..+|+++.... ....-.+++.|. .+.++|.++|||...
T Consensus        65 ~vAgii~~~~-~~~~~~g---------iap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~  128 (269)
T d1gcia_          65 HVAGTIAALN-NSIGVLG---------VAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS  128 (269)
T ss_dssp             HHHHHHHCCC-SSSBCCC---------SSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred             eecccccccC-CCccccc---------cCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc
Confidence            5678777644 4455544         688999999999877422 222334556554 368999999999644

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=93.11  E-value=0.012  Score=41.73  Aligned_cols=63  Identities=10%  Similarity=0.025  Sum_probs=39.4

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-C--ChHhhhhhccCCC-CcccEEeCCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-M--TDLIEANSMGHEP-NLIDIYSASWGPTDDGK   86 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-v--td~~EA~ALsy~~-~~iDIYScSWGP~DdG~   86 (108)
                      .|||.|+...+|   ..|         ++|+|+|-.+|+++.+. .  ....-+.++.+.. +.++|.++|||+..++.
T Consensus        71 ~vAgiiag~~~~---~~G---------vAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~  137 (318)
T d1wmda2          71 HVAGSVLGNGST---NKG---------MAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGA  137 (318)
T ss_dssp             HHHHHHHCCSSS---SCC---------SSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTC
T ss_pred             cceeeccccccc---cch---------hhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccccccc
Confidence            467777763332   333         68899999999997631 1  1111122333333 57899999999987665

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=92.91  E-value=0.016  Score=41.22  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=33.9

Q ss_pred             EEeccCCcccceeecCCCCCChHhhh--hhccCCCCcccEEeCCCCCCCCC
Q psy13853         37 TTLHSRHVSSRIRMLDQPYMTDLIEA--NSMGHEPNLIDIYSASWGPTDDG   85 (108)
Q Consensus        37 va~a~~AkI~GIRmL~g~~vtd~~EA--~ALsy~~~~iDIYScSWGP~DdG   85 (108)
                      .++||+|+|..+|+....  .+..++  .++....+.+||.|+|||..++.
T Consensus        87 ~GvAp~A~i~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~  135 (357)
T d1t1ga_          87 GALAPGAKIAVYFAPNTD--AGFLNAITTAVHDPTHKPSIVSISWGGPEDS  135 (357)
T ss_dssp             HHHSTTSEEEEEECCSSH--HHHHHHHHHHHHCTTTCCSEEEECCCEEGGG
T ss_pred             eeecccCeEEEEecccCC--CchHHHHHHHHHhhhcCCeEEecccccCcCc
Confidence            467889999999998762  233222  24555667999999999986554

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.61  E-value=0.037  Score=38.98  Aligned_cols=80  Identities=13%  Similarity=-0.001  Sum_probs=47.6

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC-ChHhhhhhccCCC------CcccEEeCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM-TDLIEANSMGHEP------NLIDIYSASWGPTDD   84 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v-td~~EA~ALsy~~------~~iDIYScSWGP~Dd   84 (108)
                      .+||.|+....|+-.|+        .++||+|+|-.+|+++.... ....-..++.|..      ...+|.++||++...
T Consensus        74 ~VAgiiaa~~~~~~~~~--------~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~~  145 (309)
T d2ixta1          74 HVAGTALADGGSDQAGI--------YGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN  145 (309)
T ss_dssp             HHHHHHHCBCCTTSCSC--------BCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSSC
T ss_pred             cccccccccccccchhh--------hhhhhhccceeeeeecCCCCccccccccccccccccccccccccccccccccccc
Confidence            46888887665555443        35789999999999976311 2222233333332      344789999987543


Q ss_pred             CCcccCcHHHHHHHHHHHHhcc
Q psy13853         85 GKTVDGPRNATMRAIVRGVNET  106 (108)
Q Consensus        85 G~tvdgP~~L~~~Al~~Gv~~G  106 (108)
                      .       .+.+.++....++|
T Consensus       146 ~-------~~~~~~~~~~~~~g  160 (309)
T d2ixta1         146 N-------SLISSAVNYAYSKG  160 (309)
T ss_dssp             C-------HHHHHHHHHHHHTT
T ss_pred             c-------cchhccccchhcCC
Confidence            2       34445555544443

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=88.99  E-value=0.11  Score=36.52  Aligned_cols=62  Identities=10%  Similarity=0.095  Sum_probs=39.7

Q ss_pred             hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCCC-CcccEEeCCCCCCCCC
Q psy13853         12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHEP-NLIDIYSASWGPTDDG   85 (108)
Q Consensus        12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG   85 (108)
                      .+||.|+... +....         .+++|++||..+++++..   ...+..+  ++.+.. +.++|+++||+.....
T Consensus        66 ~vAgii~~~~-~~~~~---------~gvap~a~i~~~~~~~~~~~~~~~~i~~--ai~~a~~~~~~i~n~S~~~~~~~  131 (274)
T d1r0re_          66 HVAGTVAALD-NTTGV---------LGVAPSVSLYAVKVLNSSGSGSYSGIVS--GIEWATTNGMDVINMSLGGASGS  131 (274)
T ss_dssp             HHHHHHHCCS-SSSBC---------CCSSTTSEEEEEECSCTTSEECHHHHHH--HHHHHHHTTCSEEEECEEBSSCC
T ss_pred             cccccccccc-ccccc---------cccCCCcEEEEEEEeCCCCCcCHHHHHH--HHHHHHhcCCceeccccccccch
Confidence            4566666543 32333         346899999999999874   1233333  343333 6899999999886543