Psyllid ID: psy14086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccccHHHHHHcccccccEEEEEEcccccccccccccccHHHHHHHHHHHccccccccccccccccccEEEcHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHcccccccEEEEEEccccEEcccccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccEEEEEEEccHHHHHHHHcccccccEEEEEccccccccccccccccHHHHHHHHHHccccccccccccccccccEEEEcHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccHHHHHccccEEEEEEcccccHHHHHcHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHcccccccEEEEEccccEcEcccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mlndsedsrvtigQVDCTVEKQLcadqeitgyptlkffkkgseseaskfrgtrdlptlTNFINEqisetpkepsdkpivnegLVELTEESFEKYVSLGNHFvkfyapwcghcqsLAPVWQELAShfkteedvsiakidctqhrsicqsfdiksyptllwiesgkkldkfqgsrTLETLVNYVSKmkgplnkkadspdaenasevpvkpepvvsltsenfndVIKSGTVFIKffapwcghckrlaPTWEELGTklldnkhgIVIAKVDCTQELSKDLcnqegvdgfpsiyvykngvrtaeyngsrDLEELYQFILKHKVESHDEL
Flexible Loop (DISEMBL)
mlndsedsrvtigqvdCTVEKqlcadqeitgyptlkffkkgseseaskfrgtrdlptltNFINEqisetpkepsdkpiVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTqhrsicqsfdiksyPTLLWIESGkkldkfqgsrTLETLVNYVSKMKGPLNKKadspdaenasevpvkpepvvslTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLcnqegvdgfpsIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL
Low Complexity Region (SEG)
MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASevpvkpepvvSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL
Disordered region (IsUnstruct)
*********VTIGQVDCTVEKQLCADQEITGYPTLKFFK****************************************NEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV********************************TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH********
Disordered Region (DISOPRED)
******DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN******************GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM*************************VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV******
Disordered Region (DISEMBL)
**********TIGQVDCTVEKQLCADQEITGYPTLKFFKK********FRGTRDLPTLTNFINEQIS********KPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG*********************EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL
Disordered Region (DISPRO)
*****EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS************NEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG********************PEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q91W90	417	Thioredoxin domain-contai	yes	N/A	0.962	0.748	0.438	7e-83
Q8NBS9	432	Thioredoxin domain-contai	yes	N/A	0.972	0.729	0.426	6e-80
P38661	364	Probable protein disulfid	N/A	N/A	0.685	0.609	0.392	4e-43
Q75M08	366	Protein disulfide isomera	yes	N/A	0.666	0.590	0.377	6e-43
O22263	361	Protein disulfide-isomera	yes	N/A	0.685	0.614	0.380	5e-42
Q942L2	371	Protein disulfide isomera	no	N/A	0.660	0.576	0.378	1e-41
P34329	618	Probable protein disulfid	yes	N/A	0.660	0.346	0.358	1e-37
Q86IA3	363	Protein disulfide-isomera	yes	N/A	0.682	0.608	0.356	1e-37
P38659	643	Protein disulfide-isomera	no	N/A	0.669	0.337	0.331	4e-36
P08003	638	Protein disulfide-isomera	no	N/A	0.669	0.340	0.327	2e-35

>sp|Q91W90|TXND5_MOUSE Thioredoxin domain-containing protein 5 OS=Mus musculus GN=Txndc5 PE=1 SV=2

 Score =  307 bits (786), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 147/335 (43%), Positives = 214/335 (63%), Gaps = 23/335 (6%)

Query: 3   NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           N  ED++V + +VDCT +  +C+ Q + GYPTLKFFK G E  A K++G RD  TL N++
Sbjct: 93  NSMEDAKVYVAKVDCTADSDVCSAQGVRGYPTLKFFKPGQE--AVKYQGPRDFETLENWM 150

Query: 63  NEQISETPK------EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
            + ++E P       EP   P + +GL EL+  +FE +VS GNHF+KF+APWCGHC++LA
Sbjct: 151 LQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALA 210

Query: 117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
           P W++LA   +  E V I K+DCTQH ++C    ++ YPTLLW   GKK+D+++G R LE
Sbjct: 211 PTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLE 270

Query: 177 TLVNYVSKMKGPLNKKADSPDAENASEVPV-KPEP------VVSLTSENFNDVIKSGTVF 229
           +L +YV      L     +P+    SE PV   EP      V++LT ++F D I  G  F
Sbjct: 271 SLRDYVQSQ---LQGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEKSFEDTIAQGITF 327

Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
           +KF+APWCGHCK LAPTWEEL  K       + IA+VDCT E  +++C++  V G+P++ 
Sbjct: 328 VKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAE--RNVCSKYSVRGYPTLL 385

Query: 290 VYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           +++ G +  E+NG RDL+ L+ F+L+   ++ DEL
Sbjct: 386 LFRGGEKVGEHNGGRDLDSLHSFVLR---QAKDEL 417

Possesses thioredoxin activity. Has been shown to reduce insulin disulfide bonds. Also complements protein disulfide-isomerase deficiency in yeast.
Mus musculus (taxid: 10090)

>sp|Q8NBS9|TXND5_HUMAN Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5 PE=1 SV=2

 Score =  297 bits (761), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 142/333 (42%), Positives = 213/333 (63%), Gaps = 18/333 (5%)

Query: 3   NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           N  ED++V + +VDCT    +C+ Q + GYPTLK FK G E  A K++G RD  TL N++
Sbjct: 107 NSMEDAKVYVAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQE--AVKYQGPRDFQTLENWM 164

Query: 63  NEQISETPK------EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
            + ++E P       EP   P + +GL EL+  +FE +V+ G+HF+KF+APWCGHC++LA
Sbjct: 165 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 224

Query: 117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
           P W++LA   +  E V I K+DCTQH  +C    ++ YPTLLW   GKK+D+++G R LE
Sbjct: 225 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 284

Query: 177 TLVNYV-SKMKGPLNKKADSPDAENASEVPVKPEP----VVSLTSENFNDVIKSGTVFIK 231
           +L  YV S+++       ++     A  +  +PE     V++LT  NF+D I  G  FIK
Sbjct: 285 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENNFDDTIAEGITFIK 344

Query: 232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY 291
           F+APWCGHCK LAPTWEEL  K      G+ IA+VDCT E  +++C++  V G+P++ ++
Sbjct: 345 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE--RNICSKYSVRGYPTLLLF 402

Query: 292 KNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           + G + +E++G RDL+ L++F+L    ++ DEL
Sbjct: 403 RGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 432

Possesses thioredoxin activity. Has been shown to reduce insulin disulfide bonds. Also complements protein disulfide-isomerase deficiency in yeast.

Homo sapiens (taxid: 9606)

>sp|P38661|PDIA6_MEDSA Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/242 (39%), Positives = 140/242 (57%), Gaps = 20/242 (8%)

Query: 86  LTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           LTEE+FEK V       V+FYAPWCGHC+ LAP +++L + FK  + V IAK+DC +H+S
Sbjct: 34  LTEENFEKEVGHDKGALVEFYAPWCGHCKKLAPEYEKLPNSFKKAKSVLIAKVDCDEHKS 93

Query: 145 ICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASE 203
           +C  + +  YPT+ W   G  +  KF+G RT E+L  +V+  +G  N K           
Sbjct: 94  VCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFVN-TEGGTNVK----------- 141

Query: 204 VPVKPEPVVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
           +   P  VV LT E FN+V+  GT  V ++F+APWCGHCK LAP +E++   +  ++  +
Sbjct: 142 IATAPSHVVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAA-VFKSEDDV 200

Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE-YNGSRDLEELYQFILKHKVES 320
           VIA +D  +   +DL  +  V GFP++  +  G +  E Y G RDL++   FI +    S
Sbjct: 201 VIANLDADK--YRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTS 258

Query: 321 HD 322
            D
Sbjct: 259 RD 260

Medicago sativa (taxid: 3879)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q75M08|PDI21_ORYSJ Protein disulfide isomerase-like 2-1 OS=Oryza sativa subsp. japonica GN=PDIL2-1 PE=2 SV=2

 Score =  174 bits (442), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 20/236 (8%)

Query: 83  LVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           ++ LTE +FEK V       V+FYAPWCGHC+ LAP +++L + FK  + V IAK+DC +
Sbjct: 32  VLALTESTFEKEVGQDRAALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDE 91

Query: 142 HRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAEN 200
           H+S+C  + +  YPT+ W   G  +  K++G RT E L  YV+             +A  
Sbjct: 92  HKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRTAEALAEYVNS------------EAAT 139

Query: 201 ASEVPVKPEPVVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNK 258
             ++   P  VV LT E F+ V+   T  V ++F+APWCGHCK LAP +E+L + +    
Sbjct: 140 NVKIAAVPSSVVVLTPETFDSVVLDETKDVLVEFYAPWCGHCKHLAPIYEKLAS-VYKQD 198

Query: 259 HGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE-YNGSRDLEELYQFI 313
            G+VIA +D  +  +  L  + GV GFP++  +  G +  E Y+G R+L++  +FI
Sbjct: 199 EGVVIANLDADKHTA--LAEKYGVSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFI 252

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana GN=PDIL2-1 PE=1 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 141/242 (58%), Gaps = 20/242 (8%)

Query: 86  LTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           LT++SFEK V       V+FYAPWCGHC+ LAP +++L + FK  + V IAK+DC + +S
Sbjct: 28  LTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEQKS 87

Query: 145 ICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASE 203
           +C  + +  YPT+ W   G  +  K++G R  E L  YV+K  G   K A          
Sbjct: 88  VCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAEALAEYVNKEGGTNVKLA---------- 137

Query: 204 VPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
               P+ VV LT +NF++++  ++  V ++F+APWCGHCK LAPT+E++ T +   + G+
Sbjct: 138 --AVPQNVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVAT-VFKQEEGV 194

Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES 320
           VIA +D   +  K L  + GV GFP++  + K+     +Y+G RDL++   FI +    S
Sbjct: 195 VIANLDA--DAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFINEKSGTS 252

Query: 321 HD 322
            D
Sbjct: 253 RD 254

Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q942L2|PDI22_ORYSJ Protein disulfide isomerase-like 2-2 OS=Oryza sativa subsp. japonica GN=PDIL2-2 PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 141/238 (59%), Gaps = 24/238 (10%)

Query: 83  LVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +V LTE +FEK V       V+FYAPWCGHC+ LAP +++L + FK  + V IAK+DC +
Sbjct: 37  VVALTESTFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVFIAKVDCDE 96

Query: 142 HRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAEN 200
           H+S+C  + +  YPT+ W   G  +  K++G R+ E L  +V+  +G  N K        
Sbjct: 97  HKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGQRSAEALAEFVN-TEGGTNVK-------- 147

Query: 201 ASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGT--KLLD 256
              +   P  VV L  +NF+ ++  ++  + ++F+APWCGHCK LAP +E+L +  KL D
Sbjct: 148 ---LATIPSSVVVLGPDNFDSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLDD 204

Query: 257 NKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE-YNGSRDLEELYQFI 313
              G+VIA +D  +   KDL  + GV G+P++  +  G +  E Y+G R+L++  +FI
Sbjct: 205 ---GVVIANLDADKH--KDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRELDDFVKFI 257

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P34329|PDIA4_CAEEL Probable protein disulfide-isomerase A4 OS=Caenorhabditis elegans GN=C14B9.2 PE=3 SV=2

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 23/237 (9%)

Query: 79  VNEGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           ++EG+V LT+++F+ ++    +  VKFYAPWCGHC+ LAP +++ +S       + +AK+
Sbjct: 34  MDEGVVVLTDKNFDAFLKKNPSVLVKFYAPWCGHCKHLAPEYEKASSKV----SIPLAKV 89

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPD 197
           D T    + + F+I+ YPTL + + GK  + + G R    +V +V     P  K      
Sbjct: 90  DATVETELGKRFEIQGYPTLKFWKDGKGPNDYDGGRDEAGIVEWVESRVDPNYKPP---- 145

Query: 198 AENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLD 256
                     PE VV+LT+ENF+D I +   V ++F+APWCGHCK+LAP +E+   KL  
Sbjct: 146 ----------PEEVVTLTTENFDDFISNNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKA 195

Query: 257 NKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
               + + KVD T E  KDL  + GV G+P++ + +NG R  +YNG R+   + +++
Sbjct: 196 QGSKVKLGKVDATIE--KDLGTKYGVSGYPTMKIIRNG-RRFDYNGPREAAGIIKYM 249

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q86IA3|PDI1_DICDI Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 133/241 (55%), Gaps = 20/241 (8%)

Query: 83  LVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDCT 140
           +V L+ ++F+  V      FVKFYAPWCGHC+ LAP ++ LA  F      V IAK+DC 
Sbjct: 24  VVVLSPDNFDTVVDGSKTVFVKFYAPWCGHCKKLAPDFEILADTFAPVSNKVVIAKVDCD 83

Query: 141 Q--HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDA 198
           Q  ++++C  +D+  YPTL   +       + G+R+++ L+ Y++              A
Sbjct: 84  QADNKALCSKYDVSGYPTLKIFDKSTTAKDYNGARSVDELLTYINNH------------A 131

Query: 199 ENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLD 256
           +   +V   P  VV L+  NF+ V+  KS  V ++F+APWCGHCK+L P +E LG     
Sbjct: 132 KTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYA- 190

Query: 257 NKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE-YNGSRDLEELYQFILK 315
           N+  +VIAK+DC    +K +C++ GV GFP++  +    +  E Y   RDL+    +I K
Sbjct: 191 NEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYINK 250

Query: 316 H 316
            
Sbjct: 251 Q 251

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P38659|PDIA4_RAT Protein disulfide-isomerase A4 OS=Rattus norvegicus GN=Pdia4 PE=1 SV=2

 Score =  152 bits (383), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 139/238 (58%), Gaps = 21/238 (8%)

Query: 82  GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDC 139
           G+  L +E+F+ +V+  +   ++FYAPWCGHC+  AP ++++AS  K  +  +++AKID 
Sbjct: 61  GVWVLNDENFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 120

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
           T    +   FD+  YPT+  ++ G+ +D + GSRT E +V  V ++  P           
Sbjct: 121 TSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREVSQP----------- 168

Query: 200 NASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNK 258
              +    PE  ++LT ENF+DV+ +   + ++F+APWCGHCK+LAP +E+   +L    
Sbjct: 169 ---DWTPPPEVTLTLTKENFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRS 225

Query: 259 HGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             I +AKVD T++   DL  +  V G+P++ +++ G R  +YNG R+   +  ++++ 
Sbjct: 226 PPIPLAKVDATEQT--DLAKRFDVSGYPTLKIFRKG-RPFDYNGPREKYGIVDYMVEQ 280

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P08003|PDIA4_MOUSE Protein disulfide-isomerase A4 OS=Mus musculus GN=Pdia4 PE=1 SV=3

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 138/238 (57%), Gaps = 21/238 (8%)

Query: 82  GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDC 139
           G+  L + +F+ +V+  +   ++FYAPWCGHC+  AP ++++AS  K  +  +++AKID 
Sbjct: 56  GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 115

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
           T    +   FD+  YPT+  ++ G+ +D + GSRT E +V  V ++  P           
Sbjct: 116 TSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREVSQP----------- 163

Query: 200 NASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNK 258
              +    PE  +SLT +NF+DV+ +   + ++F+APWCGHCK+LAP +E+   +L    
Sbjct: 164 ---DWTPPPEVTLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRS 220

Query: 259 HGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             I +AKVD T++   DL  +  V G+P++ +++ G R  +YNG R+   +  ++++ 
Sbjct: 221 PPIPLAKVDATEQT--DLAKRFDVSGYPTLKIFRKG-RPFDYNGPREKYGIVDYMIEQ 275

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
332023950	395	Thioredoxin domain-containing protein 5	0.975	0.8	0.567	1e-104
307212600	395	Thioredoxin domain-containing protein 5	0.972	0.797	0.565	1e-104
270002648	382	hypothetical protein TcasGA2_TC004980 [T	0.962	0.816	0.565	1e-102
189234306	384	PREDICTED: similar to protein disulfide	0.962	0.812	0.559	1e-101
350425445	396	PREDICTED: thioredoxin domain-containing	0.975	0.797	0.536	2e-99
340727688	396	PREDICTED: thioredoxin domain-containing	0.975	0.797	0.539	3e-99
328778481	394	PREDICTED: thioredoxin domain-containing	0.962	0.791	0.546	3e-98
383849597	397	PREDICTED: thioredoxin domain-containing	0.969	0.790	0.537	5e-98
380014408	392	PREDICTED: thioredoxin domain-containing	0.962	0.795	0.540	8e-98
94468776	397	thioredoxin/protein disulfide isomerase	0.972	0.793	0.503	3e-91

>gi|332023950|gb|EGI64168.1| Thioredoxin domain-containing protein 5 [Acromyrmex echinatior]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/326 (56%), Positives = 243/326 (74%), Gaps = 10/326 (3%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           +++ EDS + I +VDCT E  LC++Q++TGYPTLKF+K G E++  KFRGTRDLPTLT+F
Sbjct: 77  ISNEEDSNIRIAKVDCTTESILCSEQDVTGYPTLKFYKTG-ETKGVKFRGTRDLPTLTSF 135

Query: 62  INEQISETPKE---PSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
           IN+Q+  +  E   P+    VN GL+ELTE++FEK+VS G+HFVKFYAPWCGHCQ LAP 
Sbjct: 136 INDQLGSSMVEDVMPTPPEAVN-GLLELTEDTFEKHVSSGHHFVKFYAPWCGHCQKLAPT 194

Query: 119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
           W ELA+  + ++ VSI+KIDCTQHRSIC  FDIK YPTLLWIE GKK+DK+ G RT E L
Sbjct: 195 WDELANSLRNDDVVSISKIDCTQHRSICGQFDIKGYPTLLWIEDGKKVDKYTGQRTHEEL 254

Query: 179 VNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCG 238
             YVS M   L K A++            P  ++SLT+++F   I+ G  F+KFFAPWCG
Sbjct: 255 KAYVSMM---LGKNAENESNRKLESTDGIPNAILSLTADSFKQGIEKGLSFVKFFAPWCG 311

Query: 239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA 298
           HCKRLAPTWEELG K   N + + I KVDCT ++SK LCN++ VDGFP++Y+Y+NG + +
Sbjct: 312 HCKRLAPTWEELGKKFFGNDN-VNIIKVDCTLDISKQLCNEQEVDGFPTLYLYRNGRKVS 370

Query: 299 EYNGSRDLEELYQFILKHKVESHDEL 324
           EYNGSR+L++LY F++ H +++HDEL
Sbjct: 371 EYNGSRNLDDLYDFVMNH-MKTHDEL 395

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212600|gb|EFN88315.1| Thioredoxin domain-containing protein 5 [Harpegnathos saltator]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/327 (56%), Positives = 246/327 (75%), Gaps = 12/327 (3%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           +++ ED+ + I +VDCT E  LC++Q++TGYPTLKF+K G E++  KFRGTRDLP+LT+F
Sbjct: 77  MSNEEDNNIKIAKVDCTTESTLCSEQDVTGYPTLKFYKAG-ETKGIKFRGTRDLPSLTSF 135

Query: 62  INEQISETPK----EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAP 117
           IN+Q+  T       PS    VN GL+ELTE++FEK+VS G+HFVKFYAPWCGHCQ LAP
Sbjct: 136 INDQLGSTSMLEDVAPSPPEAVN-GLLELTEDTFEKHVSSGHHFVKFYAPWCGHCQKLAP 194

Query: 118 VWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET 177
            W ELA+  + ++ VSI+KIDCTQHRS+C  FDIK YPTLLWIE GKK+DK+ G RT E 
Sbjct: 195 TWDELANSLRHDDTVSISKIDCTQHRSVCGQFDIKGYPTLLWIEDGKKVDKYTGQRTHEE 254

Query: 178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWC 237
           L  YVS M   L K AD    +N S   + P  ++SLT+++F   ++ G  F+KFFAPWC
Sbjct: 255 LKAYVSMM---LGKNADESSQKNESTDDM-PHAILSLTADSFKHGVEKGLSFVKFFAPWC 310

Query: 238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT 297
           GHCKRLAPTWE+LG K   N++ + I KVDCT E SK+LCN++ VDGFPS+Y+Y++G + 
Sbjct: 311 GHCKRLAPTWEQLGKKFFGNEN-VNIVKVDCTLEASKELCNEQEVDGFPSLYLYRDGRKV 369

Query: 298 AEYNGSRDLEELYQFILKHKVESHDEL 324
           +EYNGSR+L++LY F++ H +++HDEL
Sbjct: 370 SEYNGSRNLDDLYDFVMIH-LQAHDEL 395

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002648|gb|EEZ99095.1| hypothetical protein TcasGA2_TC004980 [Tribolium castaneum]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/327 (56%), Positives = 241/327 (73%), Gaps = 15/327 (4%)

Query: 1   MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTN 60
           MLN+ +DS + I +VDCT +  LC++ ++TGYPTLKFFK G+ SE  KFRGTRDLPTLT 
Sbjct: 68  MLNE-DDSNIRIAKVDCTTDSSLCSEHDVTGYPTLKFFKVGA-SEGIKFRGTRDLPTLTT 125

Query: 61  FINEQISETPKEPSDK--PIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
           FINEQ+ E  +E ++K  P    GLVELTE++FEK+V+ G HF+KFYAPWCGHCQ LAPV
Sbjct: 126 FINEQLREGDEEDAEKKPPQPVSGLVELTEDTFEKFVATGKHFIKFYAPWCGHCQKLAPV 185

Query: 119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
           W++LA   + +  +SIAK+DCTQ R +C  F++K YPTLLWIE GKK+DK+QG RT E L
Sbjct: 186 WEQLAKSLEFDSSISIAKVDCTQWRLVCNQFEVKGYPTLLWIEDGKKVDKYQGDRTHEDL 245

Query: 179 VNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVS-LTSENFNDVIKSGTVFIKFFAPWC 237
            NYVSKM G       S +    +E P   E  V  LT + F   I++G  F+KFFAPWC
Sbjct: 246 KNYVSKMMG-------SSEIPTETEKPQSEEGAVGILTGDTFKHGIETGITFVKFFAPWC 298

Query: 238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT 297
           GHCKRLAPTW+ELG K + + + + IAKVDCT +L+KDLCN++ V+GFP+I++YKNG + 
Sbjct: 299 GHCKRLAPTWDELGKKFVADSN-VNIAKVDCTLDLNKDLCNEQEVEGFPTIFLYKNGDKI 357

Query: 298 AEYNGSRDLEELYQFILKHKVESHDEL 324
           +EY+GSR LE+LY+F+ +H    HDEL
Sbjct: 358 SEYSGSRTLEDLYEFVKQHV--GHDEL 382

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234306|ref|XP_971669.2| PREDICTED: similar to protein disulfide isomerase [Tribolium castaneum]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 237/329 (72%), Gaps = 17/329 (5%)

Query: 1   MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTN 60
           MLN+ +DS + I +VDCT +  LC++ ++TGYPTLKFFK G+ SE  KFRGTRDLPTLT 
Sbjct: 68  MLNE-DDSNIRIAKVDCTTDSSLCSEHDVTGYPTLKFFKVGA-SEGIKFRGTRDLPTLTT 125

Query: 61  FINEQISETPKEPSDK----PIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
           FINEQ+ E      D     P    GLVELTE++FEK+V+ G HF+KFYAPWCGHCQ LA
Sbjct: 126 FINEQLREVHNREEDAEKKPPQPVSGLVELTEDTFEKFVATGKHFIKFYAPWCGHCQKLA 185

Query: 117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
           PVW++LA   + +  +SIAK+DCTQ R +C  F++K YPTLLWIE GKK+DK+QG RT E
Sbjct: 186 PVWEQLAKSLEFDSSISIAKVDCTQWRLVCNQFEVKGYPTLLWIEDGKKVDKYQGDRTHE 245

Query: 177 TLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVS-LTSENFNDVIKSGTVFIKFFAP 235
            L NYVSKM G       S +    +E P   E  V  LT + F   I++G  F+KFFAP
Sbjct: 246 DLKNYVSKMMG-------SSEIPTETEKPQSEEGAVGILTGDTFKHGIETGITFVKFFAP 298

Query: 236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV 295
           WCGHCKRLAPTW+ELG K + + + + IAKVDCT +L+KDLCN++ V+GFP+I++YKNG 
Sbjct: 299 WCGHCKRLAPTWDELGKKFVADSN-VNIAKVDCTLDLNKDLCNEQEVEGFPTIFLYKNGD 357

Query: 296 RTAEYNGSRDLEELYQFILKHKVESHDEL 324
           + +EY+GSR LE+LY+F+ +H    HDEL
Sbjct: 358 KISEYSGSRTLEDLYEFVKQHV--GHDEL 384

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425445|ref|XP_003494123.1| PREDICTED: thioredoxin domain-containing protein 5-like isoform 1 [Bombus impatiens] gi|350425448|ref|XP_003494124.1| PREDICTED: thioredoxin domain-containing protein 5-like isoform 2 [Bombus impatiens]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 175/326 (53%), Positives = 240/326 (73%), Gaps = 10/326 (3%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           +++ ED  + I +VDCT +  LC + ++TGYPTLKFFK G E++ +KFRGTRDLP+LT+F
Sbjct: 78  MSNLEDKNIKIAKVDCTTDNSLCTEHDVTGYPTLKFFKAG-EAKGTKFRGTRDLPSLTSF 136

Query: 62  INEQIS---ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
           +  Q+    E+  E    P    GL+ELTE++F+K+VS G HFVKFYAPWCGHCQ LAP 
Sbjct: 137 LTAQLGISLESEDEAPTPPEPVNGLLELTEDTFDKHVSTGYHFVKFYAPWCGHCQKLAPT 196

Query: 119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
           W+ELA+  + +  VSI+K+DCTQHRS+C  FDIK YPTLLWIE GKK+DK+ G RT E L
Sbjct: 197 WEELANSLRNDNYVSISKVDCTQHRSVCGQFDIKGYPTLLWIEDGKKVDKYAGQRTHEEL 256

Query: 179 VNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCG 238
             YVSKM    N +A++   EN          V+SLT E+F   I++G  F+KFFAPWCG
Sbjct: 257 KVYVSKMLEKGNDQANTK-TENLDST---THTVLSLTGESFKHGIENGISFVKFFAPWCG 312

Query: 239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA 298
           HCKRLAP W++LG K L N + + IAKVDCT ++SK+LCN++ VDGFP++Y+Y++G++ +
Sbjct: 313 HCKRLAPIWKDLGKKFLTNDN-VKIAKVDCTLDVSKELCNEQEVDGFPTLYLYRDGLKVS 371

Query: 299 EYNGSRDLEELYQFILKHKVESHDEL 324
           EYNG+R+L++L +F+L + ++ HDEL
Sbjct: 372 EYNGARNLDDLTEFVLNY-IQPHDEL 396

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727688|ref|XP_003402171.1| PREDICTED: thioredoxin domain-containing protein 5-like [Bombus terrestris]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 239/326 (73%), Gaps = 10/326 (3%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           +++ ED  + I +VDCT +  LC + ++TGYPTLKFFK G E++ +KFRGTRDLP+LT+F
Sbjct: 78  MSNLEDKNIKIAKVDCTTDNSLCTEHDVTGYPTLKFFKAG-EAKGTKFRGTRDLPSLTSF 136

Query: 62  INEQIS---ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
           +  Q+    E+  E    P    GL+ELTE++F+K+VS G HFVKFYAPWCGHCQ LAP 
Sbjct: 137 LTAQLGISLESEDEAPTPPEPVNGLLELTEDTFDKHVSTGYHFVKFYAPWCGHCQKLAPT 196

Query: 119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
           W+ELA+  + +  VSI+K+DCTQHRS+C  FDIK YPTLLWIE GKK+DK+ G RT E L
Sbjct: 197 WEELANSLRNDNYVSISKVDCTQHRSVCGQFDIKGYPTLLWIEDGKKVDKYAGQRTHEEL 256

Query: 179 VNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCG 238
             YVSKM    N +A+    EN          V+SLT E+F   I++G  F+KFFAPWCG
Sbjct: 257 KVYVSKMLEKGNDQANIM-TENLDST---THTVLSLTGESFKHSIENGISFVKFFAPWCG 312

Query: 239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA 298
           HCKRLAP W++LG K L N + + IAKVDCT ++SK+LCN++ VDGFP++Y+Y++G++ +
Sbjct: 313 HCKRLAPIWKDLGKKFLTNDN-VKIAKVDCTLDVSKELCNEQEVDGFPTLYLYRDGLKVS 371

Query: 299 EYNGSRDLEELYQFILKHKVESHDEL 324
           EYNG+R+L++L +FIL + ++ HDEL
Sbjct: 372 EYNGARNLDDLTEFILNY-IQPHDEL 396

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778481|ref|XP_392102.3| PREDICTED: thioredoxin domain-containing protein 5-like isoform 1 [Apis mellifera]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 177/324 (54%), Positives = 238/324 (73%), Gaps = 12/324 (3%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
           +EDS V I +VDCT +  LCA+ ++TGYPTLKFFK G E++  KF+GTRDL +L +F+ +
Sbjct: 79  NEDSNVKIAKVDCTTDSNLCAEHDVTGYPTLKFFKAG-ETKGIKFKGTRDLISLISFLTD 137

Query: 65  QISETPKE----PSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ 120
            +  T       PS    VN GL+ELTE++F+K+VS G HFVKFYAPWCGHCQ LAP W+
Sbjct: 138 HLGITFGSENIIPSPPEAVN-GLLELTEDNFDKHVSSGYHFVKFYAPWCGHCQKLAPTWE 196

Query: 121 ELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180
           ELA+  + +  VSI+K+DCTQHRS+C  FDIK YPTLLWIE GKK+DK+ G RT E L  
Sbjct: 197 ELANSLRNDNYVSISKVDCTQHRSVCGQFDIKGYPTLLWIEDGKKVDKYTGQRTHEELKA 256

Query: 181 YVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHC 240
           YVSKM    N + D+    + S        V+SLT E+F   I++G  F+KFFAPWCGHC
Sbjct: 257 YVSKMLEKENDQMDTKTDNSDSTT----HAVLSLTGESFKHGIENGISFVKFFAPWCGHC 312

Query: 241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEY 300
           KRLAP W++LG K L NK+ + I KVDCT ++SK+LCN++ VDGFP++Y+Y++G++ +EY
Sbjct: 313 KRLAPIWKDLGKKFLTNKN-VKIVKVDCTLDISKELCNEQEVDGFPTLYLYRDGLKVSEY 371

Query: 301 NGSRDLEELYQFILKHKVESHDEL 324
           NG+R+L++LY+FI+ + V+ HDEL
Sbjct: 372 NGARNLDDLYEFIMIY-VQPHDEL 394

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849597|ref|XP_003700431.1| PREDICTED: thioredoxin domain-containing protein 5-like [Megachile rotundata]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 177/329 (53%), Positives = 242/329 (73%), Gaps = 15/329 (4%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           +++ ED+ + I +VDCT +  LCA+ ++TGYPTLKFFK G E++ +KFRGTRDLP+L +F
Sbjct: 78  ISNEEDNNIRIAKVDCTTDSSLCAEHDVTGYPTLKFFKVG-ETKGTKFRGTRDLPSLISF 136

Query: 62  INEQISETPKE----PSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAP 117
           +N+Q+  T       PS    VN GL+ELTE++F+K+VS G HFVKFYAPWCG C+ LAP
Sbjct: 137 LNDQLGTTLGSSDVAPSPPEAVN-GLMELTEDTFDKHVSTGYHFVKFYAPWCGFCKKLAP 195

Query: 118 VWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET 177
            W+ELA+ F+    VSI+K+DCTQHRS+C  FDI  YPTLLWIE GKK+DK+ G R+ E 
Sbjct: 196 TWEELANSFRNNNYVSISKVDCTQHRSVCGQFDITGYPTLLWIEDGKKVDKYAGQRSHEE 255

Query: 178 LVNYVSKMKGPLNKKADS--PDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAP 235
           L  YVSKM   L K++D     ++N+  VP     V+SLT E+F   I++G  F+KFFAP
Sbjct: 256 LKAYVSKM---LGKESDQVIVKSDNSDSVPYT--VVLSLTGESFRHGIENGISFVKFFAP 310

Query: 236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV 295
           WCGHCKRLAP WE+L  K  DN+  + I KVDCT + SK+LCN++ VDGFP++Y+Y++G+
Sbjct: 311 WCGHCKRLAPIWEDLAKKFQDNEE-VKIIKVDCTLDASKELCNEQEVDGFPTLYLYRDGL 369

Query: 296 RTAEYNGSRDLEELYQFILKHKVESHDEL 324
           + AEYNG+R+L++LY F+  + ++ HDEL
Sbjct: 370 KVAEYNGARNLDDLYDFVEGY-LQPHDEL 397

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014408|ref|XP_003691224.1| PREDICTED: thioredoxin domain-containing protein 5-like [Apis florea]

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 175/324 (54%), Positives = 239/324 (73%), Gaps = 12/324 (3%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
           +EDS V I ++DCT +  LCA+ ++TGYPTLKFFK G E++  KF+GTRDL +L +F+ +
Sbjct: 77  NEDSNVKIAKIDCTTDSSLCAEHDVTGYPTLKFFKAG-EAKGIKFKGTRDLISLISFLTD 135

Query: 65  QISETPKE----PSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ 120
            +  T       PS    VN GL+ELTE+SF+K+VS G HF+KFYAPWCGHCQ LAP W+
Sbjct: 136 HLGITFGSENIIPSPPEAVN-GLLELTEDSFDKHVSNGYHFIKFYAPWCGHCQKLAPTWE 194

Query: 121 ELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180
           ELA+  + ++ VSI+K+DCTQHRS+C  FDIK YPTLLWIE GKK+DK+ G RT E L  
Sbjct: 195 ELANSLRNDKYVSISKVDCTQHRSVCGQFDIKGYPTLLWIEDGKKVDKYTGQRTHEELKV 254

Query: 181 YVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHC 240
           YVSKM    N + D+    + S        V+SLT E+F   I++G  F+KFFAPWCGHC
Sbjct: 255 YVSKMLEKGNDQVDTKTDNSDSTT----HAVLSLTGESFKHGIENGISFVKFFAPWCGHC 310

Query: 241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEY 300
           KRLAP W++LG K L N++ + I KVDCT ++SK+LCN++ VDGFP++Y+Y++G++ +EY
Sbjct: 311 KRLAPIWKDLGKKFLTNEN-VKIVKVDCTLDISKELCNEQEVDGFPTLYLYRDGLKVSEY 369

Query: 301 NGSRDLEELYQFILKHKVESHDEL 324
           NG+R+L++LY+FI+ + V+ HDEL
Sbjct: 370 NGARNLDDLYEFIMTY-VQPHDEL 392

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468776|gb|ABF18237.1| thioredoxin/protein disulfide isomerase [Aedes aegypti]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/330 (50%), Positives = 224/330 (67%), Gaps = 15/330 (4%)

Query: 3   NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG-SESEASKFRGTRDLPTLTNF 61
           ND    +V IG+VDCT +  LC++Q++TGYPTLKFFK G S  ++ K+RG RDL     F
Sbjct: 75  NDDSTLKVKIGRVDCTTDGDLCSEQDVTGYPTLKFFKLGVSADQSVKYRGARDLDAFNAF 134

Query: 62  INEQIS-------ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQS 114
           I EQ+        ET  EP  KP+    LVELT+++F K++S G HFVKF+APWCGHC  
Sbjct: 135 IREQLGIEEDEFEETVAEPP-KPV--SPLVELTDDTFAKHISSGKHFVKFFAPWCGHCTK 191

Query: 115 LAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT 174
           LAP W+ELA   + +  +SI+KIDCTQ+R IC  F++K YPTLLWIE GKK++K+ GSR+
Sbjct: 192 LAPTWEELAKSLEYDTSISISKIDCTQYRPICTDFEVKGYPTLLWIEDGKKIEKYSGSRS 251

Query: 175 LETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFA 234
            E L  YV+KM G L     +   E A +       VV L+  +F   I+ G  F+KF+A
Sbjct: 252 HEDLKAYVAKMAGGLKLDEATEKVEGAEK--DNTSAVVQLSQPDFQHAIEKGVTFVKFYA 309

Query: 235 PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG 294
           PWCGHC RLAPTWE+L  K + +   + IAKVDCT E++KDLC ++ V+GFP++Y+Y+NG
Sbjct: 310 PWCGHCMRLAPTWEQLAEKFVGSDK-VKIAKVDCTLEVNKDLCGEQDVNGFPTVYIYRNG 368

Query: 295 VRTAEYNGSRDLEELYQFILKHKVESHDEL 324
            + +EYNG+R LE+L+ F+ +H  E HDEL
Sbjct: 369 EKLSEYNGNRSLEDLHDFVTRHLTE-HDEL 397

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
FB|FBgn0030329	416	prtp "pretaporter" [Drosophila	0.975	0.759	0.489	7.4e-82
MGI|MGI:2145316	417	Txndc5 "thioredoxin domain con	0.972	0.755	0.430	1.9e-76
RGD|2323973	417	Txndc5 "thioredoxin domain con	0.972	0.755	0.430	1.3e-75
UNIPROTKB|F1PHP1	323	TXNDC5 "Uncharacterized protei	0.962	0.965	0.431	5.7e-75
UNIPROTKB|Q8NBS9	432	TXNDC5 "Thioredoxin domain-con	0.972	0.729	0.426	1.9e-74
UNIPROTKB|Q86UY0	360	TXNDC5 "TXNDC5 protein" [Homo	0.972	0.875	0.426	1.9e-74
UNIPROTKB|F1P4H4	414	TXNDC5 "Uncharacterized protei	0.969	0.758	0.395	1.6e-70
ZFIN|ZDB-GENE-040426-1951	403	txndc5 "thioredoxin domain con	0.969	0.779	0.397	1.7e-68
UNIPROTKB|F1MKS3	257	TXNDC5 "Uncharacterized protei	0.756	0.953	0.429	2.1e-54
TAIR|locus:2062029	361	UNE5 "UNFERTILIZED EMBRYO SAC	0.706	0.634	0.373	2.8e-41

FB|FBgn0030329 prtp "pretaporter" [Drosophila melanogaster (taxid:7227)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 164/335 (48%), Positives = 217/335 (64%)

Query:     6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
             ++ +V I +VDCT  + LCA  ++TGYPTL+ FK G E E+ KF+GTRDLP +T+FIN++
Sbjct:    85 DNPKVIIAKVDCTKHQGLCATHQVTGYPTLRLFKLGEE-ESVKFKGTRDLPAITDFINKE 143

Query:    66 ISETPK----EPSDKPI--VNEG-LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
             +S   +    E   + +  +N G +V+LTE++F K+VS GNHFVKF+APWC HCQ LAP 
Sbjct:   144 LSAPAEADLGEVKREQVENLNIGKVVDLTEDTFAKHVSTGNHFVKFFAPWCSHCQRLAPT 203

Query:   119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
             W++LA     E  V+I+KIDCTQ RSICQ F++K YPTLLWIE GKK++K+ G+R L TL
Sbjct:   204 WEDLAKELIKEPTVTISKIDCTQFRSICQDFEVKGYPTLLWIEDGKKIEKYSGARDLSTL 263

Query:   179 VNYVSKMKG-PLNKKADSPDAENA-------SXXXXXXXXXXSLTSEN-FNDVIKSGTVF 229
               YV KM G PL K A     E                     LT E+ F+  I  G  F
Sbjct:   264 KTYVEKMVGVPLEKTAGEAGDEKVVIEEVAGEEDAAKKLTPQQLTGEDEFDQAIAEGVAF 323

Query:   230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
             IKF+APWCGHC++L PTWE+L T+    +  + IAKVDCT   +K +C  + V+G+P+++
Sbjct:   324 IKFYAPWCGHCQKLQPTWEQLATETHQAQSSVKIAKVDCTAPENKQVCIDQQVEGYPTLF 383

Query:   290 VYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
             +YKNG R  EY GSR L EL Q  LK K   HDEL
Sbjct:   384 LYKNGQRQNEYEGSRSLPEL-QAYLK-KFLGHDEL 416

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS;IDA

GO:0009986 "cell surface" evidence=IDA

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IMP

MGI|MGI:2145316 Txndc5 "thioredoxin domain containing 5" [Mus musculus (taxid:10090)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 143/332 (43%), Positives = 215/332 (64%)

Query:     3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
             N  ED++V + +VDCT +  +C+ Q + GYPTLKFFK G E  A K++G RD  TL N++
Sbjct:    93 NSMEDAKVYVAKVDCTADSDVCSAQGVRGYPTLKFFKPGQE--AVKYQGPRDFETLENWM 150

Query:    63 NEQISE---TPK---EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
              + ++E   TP+   EP   P + +GL EL+  +FE +VS GNHF+KF+APWCGHC++LA
Sbjct:   151 LQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALA 210

Query:   117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
             P W++LA   +  E V I K+DCTQH ++C    ++ YPTLLW   GKK+D+++G R LE
Sbjct:   211 PTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLE 270

Query:   177 TLVNYV-SKMKGP--LNKKADSPDAE-NASXXXXXXXXXXSLTSENFNDVIKSGTVFIKF 232
             +L +YV S+++G     +  +  +A   A+          +LT ++F D I  G  F+KF
Sbjct:   271 SLRDYVQSQLQGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEKSFEDTIAQGITFVKF 330

Query:   233 FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
             +APWCGHCK LAPTWEEL  K       + IA+VDCT E  +++C++  V G+P++ +++
Sbjct:   331 YAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAE--RNVCSKYSVRGYPTLLLFR 388

Query:   293 NGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
              G +  E+NG RDL+ L+ F+L+   ++ DEL
Sbjct:   389 GGEKVGEHNGGRDLDSLHSFVLR---QAKDEL 417

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|2323973 Txndc5 "thioredoxin domain containing 5 (endoplasmic reticulum)" [Rattus norvegicus (taxid:10116)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 143/332 (43%), Positives = 213/332 (64%)

Query:     3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
             N  ED++V + +VDCT    +C+ Q + GYPTLKFFK G E  A K++G RD  TL N++
Sbjct:    93 NSMEDAKVYVAKVDCTANSDVCSAQGVRGYPTLKFFKPGQE--AVKYQGPRDFETLENWM 150

Query:    63 NEQISE---TPK---EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
              + ++E   TP+   EP   P + +GL EL+  +FE +VS GNHF+KF+APWCGHC++LA
Sbjct:   151 LQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALA 210

Query:   117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
             P W++LA   +  E V I K+DCTQH ++C    ++ YPTLLW   GKK+D+++G R LE
Sbjct:   211 PTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLE 270

Query:   177 TLVNYV-SKMKGP--LNKKADSPDAEN-ASXXXXXXXXXXSLTSENFNDVIKSGTVFIKF 232
             +L +YV S+++G     +  +  +A   A+          +LT ++F D I  G  F+KF
Sbjct:   271 SLRDYVQSQLQGSEAAPETVEPSEAPVLAAEPPGDKGTVLALTEKSFEDTIAQGITFVKF 330

Query:   233 FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
             +APWCGHCK LAPTWEEL  K       + IA+VDCT E  + +C++  V G+P++ +++
Sbjct:   331 YAPWCGHCKNLAPTWEELSKKEFPGLADVTIAEVDCTAE--RGVCSKYSVRGYPTLLLFR 388

Query:   293 NGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
              G +  E+NG RDL+ L+ F+L+   ++ DEL
Sbjct:   389 GGEKVGEHNGGRDLDSLHSFVLR---QAKDEL 417

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA;ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1PHP1 TXNDC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 142/329 (43%), Positives = 209/329 (63%)

Query:     6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
             ED++V + +VDCT +  +C++Q + GYPTLKFFK G E  A K++G RD   L N++ + 
Sbjct:     2 EDAKVYVAKVDCTADSDVCSEQGVRGYPTLKFFKPGQE--AVKYQGPRDFQALENWMLQT 59

Query:    66 ISE---TPK---EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVW 119
             ++E   TP+   EP   P   +GL EL+  +FE +V+ G+HF+KF+APWCGHC++LAP W
Sbjct:    60 LNEEPATPEPAAEPPRAPERKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALAPAW 119

Query:   120 QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLV 179
             ++LA   +  E V I K+DCTQH  +C    ++ YP LLW   G+K+D+++G R LE+L 
Sbjct:   120 EQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPALLWFRDGQKIDQYKGKRDLESLR 179

Query:   180 NYVSKMKGPLNKKADS---P-DAENASXXXXXXXXXXSLTSENFNDVIKSGTVFIKFFAP 235
              YV        ++A     P +A  A+          +LT +NF D I  G  FIKF+AP
Sbjct:   180 EYVESQLRSAEREAPETVQPSEAPVAAAEPVAQGTVLALTEKNFEDTIAEGLTFIKFYAP 239

Query:   236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV 295
             WCGHCK LAPTWEEL  K       + IA+VDCT E S  +C++  V G+P++ +++ G 
Sbjct:   240 WCGHCKNLAPTWEELSRKEFPGLAEVKIAEVDCTAERS--ICSKYSVRGYPTLLLFRGGQ 297

Query:   296 RTAEYNGSRDLEELYQFILKHKVESHDEL 324
             + +E+NGSRDL+ L+QF+L+   ++ DEL
Sbjct:   298 KVSEHNGSRDLDSLHQFVLR---QARDEL 323

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|Q8NBS9 TXNDC5 "Thioredoxin domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 142/333 (42%), Positives = 210/333 (63%)

Query:     3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
             N  ED++V + +VDCT    +C+ Q + GYPTLK FK G E  A K++G RD  TL N++
Sbjct:   107 NSMEDAKVYVAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQE--AVKYQGPRDFQTLENWM 164

Query:    63 NEQISE---TPK---EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
              + ++E   TP+   EP   P + +GL EL+  +FE +V+ G+HF+KF+APWCGHC++LA
Sbjct:   165 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 224

Query:   117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
             P W++LA   +  E V I K+DCTQH  +C    ++ YPTLLW   GKK+D+++G R LE
Sbjct:   225 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 284

Query:   177 TLVNYV-SKMK----GPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSGTVFIK 231
             +L  YV S+++    G       S     A+          +LT  NF+D I  G  FIK
Sbjct:   285 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENNFDDTIAEGITFIK 344

Query:   232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY 291
             F+APWCGHCK LAPTWEEL  K      G+ IA+VDCT E  +++C++  V G+P++ ++
Sbjct:   345 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE--RNICSKYSVRGYPTLLLF 402

Query:   292 KNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
             + G + +E++G RDL+ L++F+L    ++ DEL
Sbjct:   403 RGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 432

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

UNIPROTKB|Q86UY0 TXNDC5 "TXNDC5 protein" [Homo sapiens (taxid:9606)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 142/333 (42%), Positives = 210/333 (63%)

Query:     3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
             N  ED++V + +VDCT    +C+ Q + GYPTLK FK G E  A K++G RD  TL N++
Sbjct:    35 NSMEDAKVYVAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQE--AVKYQGPRDFQTLENWM 92

Query:    63 NEQISE---TPK---EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
              + ++E   TP+   EP   P + +GL EL+  +FE +V+ G+HF+KF+APWCGHC++LA
Sbjct:    93 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 152

Query:   117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
             P W++LA   +  E V I K+DCTQH  +C    ++ YPTLLW   GKK+D+++G R LE
Sbjct:   153 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 212

Query:   177 TLVNYV-SKMK----GPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSGTVFIK 231
             +L  YV S+++    G       S     A+          +LT  NF+D I  G  FIK
Sbjct:   213 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENNFDDTIAEGITFIK 272

Query:   232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY 291
             F+APWCGHCK LAPTWEEL  K      G+ IA+VDCT E  +++C++  V G+P++ ++
Sbjct:   273 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE--RNICSKYSVRGYPTLLLF 330

Query:   292 KNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
             + G + +E++G RDL+ L++F+L    ++ DEL
Sbjct:   331 RGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 360

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1P4H4 TXNDC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 132/334 (39%), Positives = 209/334 (62%)

Query:     3 NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
             N+ E+ +V + +VDCT +  LC++  + GYPTLK  K G E    K++G RD   L N++
Sbjct:    89 NNMENPQVYVVKVDCTADTPLCSEFGVRGYPTLKLLKPGQEP--LKYQGPRDFQALENWM 146

Query:    63 NEQISETPK------EPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLA 116
              E+++  P       EP   P   +G+ EL+ ++F+ +++ GNHF+KF+APWCGHC++LA
Sbjct:   147 LEKLNGEPSDPESAVEPPKAPEPKQGMYELSADNFKTHIAEGNHFIKFFAPWCGHCKALA 206

Query:   117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
             P W++LA  F+  E V I K+DCTQH  +C    ++ YPTLLW  +G+K D+++G R  +
Sbjct:   207 PTWEQLALAFEHSETVKIGKVDCTQHYEVCSENQVRGYPTLLWFRNGEKGDQYKGKRDFD 266

Query:   177 TLVNYV-SKMKG-----PLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSGTVFI 230
             +L  YV S+++      P +K  ++P    A           SL+ ++F++ I  G  FI
Sbjct:   267 SLKEYVDSQLQNSGKEPPASKPTEAPQPP-AEPTQAEQAAVLSLSEKDFDETIARGITFI 325

Query:   231 KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290
             KF+APWCGHCK LAPTWE L  +       + IA+VDCT E  +++CN+  V G+P++ +
Sbjct:   326 KFYAPWCGHCKNLAPTWESLAKEQFPGLTDVKIAEVDCTVE--RNVCNRFSVRGYPTLLL 383

Query:   291 YKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
             ++ G + +E+NG+RDLE L+ F+L+   ++ DEL
Sbjct:   384 FRGGKKVSEHNGTRDLESLHSFVLR---QARDEL 414

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

ZFIN|ZDB-GENE-040426-1951 txndc5 "thioredoxin domain containing 5" [Danio rerio (taxid:7955)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 134/337 (39%), Positives = 202/337 (59%)

Query:     3 NDSEDSRVTIGQVDCTVEKQLCA-DQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
             N  E     + +VDCT + + C+ +  I GYPTLK FK   E EA K++G RDL  L N+
Sbjct:    75 NSMEAPPAYVVKVDCTKDTKFCSIEHGIRGYPTLKLFKP--EQEAVKYQGPRDLQALENW 132

Query:    62 INEQISETPKEPSDKPIV------NEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSL 115
             + + + E P+EP  +P         +GL ELT  +F+ +++ G+HFVKF+APWCGHC+++
Sbjct:   133 MLKTLQEEPEEPQSEPEPPKVPEPKQGLYELTATNFKSHIAKGSHFVKFFAPWCGHCKAM 192

Query:   116 APVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL 175
             AP W++LAS F+  + + I+K+DCTQH  +C    ++ YPTLL+   G+K+D+++G R L
Sbjct:   193 APTWEQLASSFEHSDSIKISKVDCTQHYEVCSDNQVRGYPTLLFFTDGEKIDQYKGKRDL 252

Query:   176 ETLVNYVSKMKGPLNKKADSPDAEN--------ASXXXXXXXXXXSLTSENFNDVIKSGT 227
             ++   +V         K D P+ E         ++           LT  NF++ +  G 
Sbjct:   253 DSFKEFVDNHVKAAESK-DEPEKEEEHTHEIPPSAEPEKQESNVLVLTESNFDETVAKGL 311

Query:   228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
              FIKF+APWCGHCK LAPTW++L  K       + IAKVDCT E  + LCN+  V G+P+
Sbjct:   312 SFIKFYAPWCGHCKNLAPTWDDLSQKEFPGLTDVKIAKVDCTVE--RTLCNRFSVRGYPT 369

Query:   288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
             + +++ G +  E+NG RDLE L+ FI+K   ++ DEL
Sbjct:   370 LLMFRAGQQGEEHNGGRDLESLHSFIMK---QARDEL 403

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|F1MKS3 TXNDC5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 112/261 (42%), Positives = 159/261 (60%)

Query:    34 TLKFFKKGSESEASKFRGTRDLPTLTNFINEQISE---TPK---EPSDKPIVNEGLVELT 87
             +LKFFK G E  A K++G RD   L  ++ + ++E   TP+   EP   P + +GL EL+
Sbjct:     1 SLKFFKPGQE--AVKYQGPRDFQALEKWMLQTLNEEPPTPEPAVEPPRTPELKQGLYELS 58

Query:    88 EESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC 146
               +FE +V+  G+HF+KF+APWCGHC++LAP W++LA   +  E V I K+DCTQH  +C
Sbjct:    59 AGNFELHVAQEGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELC 118

Query:   147 QSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV-SKMK--GPLNKKADSPDAENASX 203
                 ++ YPTLLW   GKK+D+++G R L++L  YV S+++  GP   +   P    A  
Sbjct:   119 SGNQVRGYPTLLWFRDGKKVDQYKGKRDLDSLREYVQSQLQSAGPAAPEPTQPSEAPALA 178

Query:   204 X--XXXXXXXXSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
                        +LT  NF+D I  G  FIKF+APWCGHCK LAPTWE+L  K       +
Sbjct:   179 AEPAADQGTVLALTERNFDDAIAEGVTFIKFYAPWCGHCKDLAPTWEDLSKKEFPGLAEV 238

Query:   262 VIAKVDCTQELSKDLCNQEGV 282
              IA+VDCT E  ++LC++  V
Sbjct:   239 TIAEVDCTAE--RNLCSKYSV 257

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

TAIR|locus:2062029 UNE5 "UNFERTILIZED EMBRYO SAC 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 93/249 (37%), Positives = 144/249 (57%)

Query:    79 VNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
             V + +V LT++SFEK V       V+FYAPWCGHC+ LAP +++L + FK  + V IAK+
Sbjct:    21 VADDVVVLTDDSFEKEVGKDKGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKV 80

Query:   138 DCTQHRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLNKKADSP 196
             DC + +S+C  + +  YPT+ W   G  +  K++G R  E L  YV+K  G   K A  P
Sbjct:    81 DCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAEALAEYVNKEGGTNVKLAAVP 140

Query:   197 DAENASXXXXXXXXXXSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKL 254
               +N             LT +NF++++  ++  V ++F+APWCGHCK LAPT+E++ T +
Sbjct:   141 --QNVVV----------LTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVAT-V 187

Query:   255 LDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
                + G+VIA +D   +  K L  + GV GFP++  + K+     +Y+G RDL++   FI
Sbjct:   188 FKQEEGVVIANLDA--DAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFI 245

Query:   314 LKHKVESHD 322
              +    S D
Sbjct:   246 NEKSGTSRD 254

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8NBS9	TXND5_HUMAN	No assigned EC number	0.4264	0.9722	0.7291	yes	N/A
Q91W90	TXND5_MOUSE	No assigned EC number	0.4388	0.9629	0.7482	yes	N/A
Q00216	TIGA_ASPNG	5, ., 3, ., 4, ., 1	0.3413	0.7098	0.6406	yes	N/A
O22263	PDI21_ARATH	5, ., 3, ., 4, ., 1	0.3801	0.6851	0.6149	yes	N/A
Q86IA3	PDI1_DICDI	5, ., 3, ., 4, ., 1	0.3568	0.6820	0.6088	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	324
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	1e-49
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	1e-43
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-40
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-39
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	2e-36
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	4e-36
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	6e-35
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	1e-34
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	6e-34
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-32
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-30
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	3e-30
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	8e-30
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-26
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	7e-26
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	7e-24
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	7e-24
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	1e-23
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	7e-23
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	1e-22
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-22
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	4e-22
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	1e-21
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	1e-21
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-20
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	2e-20
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	6e-19
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	6e-19
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	7e-19
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	8e-19
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	2e-18
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	3e-18
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	5e-18
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-17
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	2e-17
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	4e-17
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	5e-17
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	5e-17
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	6e-17
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	7e-17
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	4e-16
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	3e-15
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-15
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	6e-14
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	4e-13
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	9e-13
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	1e-12
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	3e-11
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	4e-11
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	5e-10
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	6e-10
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	2e-09
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	3e-09
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	4e-09
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	7e-09
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	7e-09
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	7e-09
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	1e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	1e-08
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-08
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-08
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	3e-08
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	1e-07
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	5e-07
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	6e-07
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	9e-07
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	1e-06
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	2e-06
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	2e-06
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	4e-06
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	4e-06
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	5e-06
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-05
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	1e-05
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-05
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	5e-05
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	6e-05
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	1e-04
cd03065	120	cd03065, PDI_b_Calsequestrin_N, PDIb family, Calse	1e-04
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-04
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	4e-04
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	4e-04
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	5e-04
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	6e-04
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	7e-04
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	0.002
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	0.004
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	0.004

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  160 bits (407), Expect = 1e-49
 Identities = 54/102 (52%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCT 140
           G++ELTE++F+ +++ GNHFVKF+APWCGHC+ LAP W++LA  F  E   V IAK+DCT
Sbjct: 1   GVLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
           QHR +C  F ++ YPTLL  + G+K+DK++G+R L++L  +V
Sbjct: 61  QHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  144 bits (366), Expect = 1e-43
 Identities = 50/103 (48%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           V+ LT +NF+  I  G  F+KFFAPWCGHCKRLAPTWE+L  K  +    + IAKVDCTQ
Sbjct: 2   VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ 61

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
              ++LC++  V G+P++ ++K+G +  +Y G+RDL+ L +F+
Sbjct: 62  H--RELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  135 bits (343), Expect = 4e-40
 Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 5/104 (4%)

Query: 212 VSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           V LT +NF++++K    V ++F+APWCGHCK LAP +E+L  + L     +V+AKVDCT 
Sbjct: 1   VELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKE-LKGDGKVVVAKVDCTA 59

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFI 313
               DLC++ GV G+P+I ++ NG +   +Y G R LE L +FI
Sbjct: 60  N--NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  133 bits (336), Expect = 4e-39
 Identities = 42/101 (41%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 84  VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           VELT+++F++ V       V+FYAPWCGHC++LAP +++LA   K +  V +AK+DCT +
Sbjct: 1   VELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN 60

Query: 143 RSICQSFDIKSYPTLLWIESGKKL-DKFQGSRTLETLVNYV 182
             +C  + ++ YPT+    +G K   K++G RTLE+LV ++
Sbjct: 61  NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  126 bits (318), Expect = 2e-36
 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 4/104 (3%)

Query: 214 LTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           LT+ NF++++ S   V ++F+APWCGHCK LAP +E+L  +L  +   IV+AKVD T E 
Sbjct: 1   LTASNFDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDP-DIVLAKVDATAE- 58

Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            KDL ++ GV GFP+I  +  G +  +Y G RDLE + +F+ + 
Sbjct: 59  -KDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  125 bits (316), Expect = 4e-36
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 210 PVVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
            V  LT ENF++ +      V + F+APWCG CK LAP +E+L  +  D+   +  AKVD
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDD---VKFAKVD 57

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +    DL ++ GV GFP+I  +KNG + ++Y G+R  ++L  FI KH
Sbjct: 58  ADEN--PDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  122 bits (308), Expect = 6e-35
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 82  GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
            +VELT+ +F+K V     +  V+FYAPWCGHC++LAP +++LA+ F  E+DV IAK+D 
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 140 TQ-HRSICQSFDIKSYPTLLWIESG-KKLDKFQGSRTLETLVNYV 182
            + ++ + + + +  +PTL +   G  +  K++G R LE LV +V
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  122 bits (307), Expect = 1e-34
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 86  LTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           LT  +F++ V       V+FYAPWCGHC++LAP +++LA   K + D+ +AK+D T  + 
Sbjct: 1   LTASNFDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKD 60

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           +   F +  +PT+ +   GKK   ++G R LE +V +V++
Sbjct: 61  LASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNE 100

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  120 bits (302), Expect = 6e-34
 Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 5/106 (4%)

Query: 211 VVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           VV LT  NF+ V+      V ++F+APWCGHCK LAP +E+L   +  N+  +VIAKVD 
Sbjct: 2   VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLA-AVFANEDDVVIAKVDA 60

Query: 269 TQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
            +  +KDL  + GV GFP++  + K      +Y G RDLE+L +F+
Sbjct: 61  DEA-NKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  116 bits (292), Expect = 2e-32
 Identities = 37/105 (35%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 82  GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
            +  LT+E+F++ V  S     V FYAPWCG C++LAP +++LA  +K  +DV  AK+D 
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDA 58

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            ++  +   + ++ +PT+ + ++GKK+  + G+RT + LV ++ K
Sbjct: 59  DENPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  119 bits (301), Expect = 1e-30
 Identities = 78/302 (25%), Positives = 124/302 (41%), Gaps = 44/302 (14%)

Query: 35  LKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKY 94
            K   +  +          D+  L  FI  +    P            + E T+E+  KY
Sbjct: 184 FKPKDEDEKFSKVDGEMDTDVSDLEKFI--RAESLPL-----------VGEFTQETAAKY 230

Query: 95  VSLGNHFVKFY--APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152
              G   V +Y         + L   + E A  F+  + V+ A  D        + F +K
Sbjct: 231 FESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFR-GKFVNFAVADEEDFGRELEYFGLK 289

Query: 153 S--YPTLLWIESGKKLDKF------QGSRTLETLVNYVSKMK-GPLNKKADSPDAENASE 203
           +  +P +  I+  +   K+        S  LE  V      K  P  K    P+ +    
Sbjct: 290 AEKFPAVA-IQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDE--- 345

Query: 204 VPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
                 PV  L  +NF++++  ++  V ++F+APWCGHCK LAP +EEL  K  D +  +
Sbjct: 346 -----GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDV 400

Query: 262 VIAKVDCTQ-ELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKHKV 318
           VIAK+D T  ++         V+GFP+I     G ++    Y+G R LE+  +FI KH  
Sbjct: 401 VIAKMDATANDVPPF-----EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455

Query: 319 ES 320
             
Sbjct: 456 FP 457

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  110 bits (277), Expect = 3e-30
 Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 8/108 (7%)

Query: 210 PVVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           PV  +  +NF++V+      V ++F+APWCGHCK LAP +EEL  KL  + + +VIAK+D
Sbjct: 1   PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDN-VVIAKMD 59

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFI 313
            T     D+ ++  VDGFP+I  +  G ++   +Y G R LE+L +FI
Sbjct: 60  ATA---NDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  117 bits (296), Expect = 8e-30
 Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 4/109 (3%)

Query: 209 EPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           E V+ LT +NF+D IKS   V ++F+APWCGHCK LAP +E+   +L      I +AKVD
Sbjct: 1   EDVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVD 60

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFILK 315
            T+E  KDL  + GV G+P++ +++NG  +  +YNG RD + + +++ K
Sbjct: 61  ATEE--KDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKK 107

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =   99 bits (250), Expect = 2e-26
 Identities = 39/103 (37%), Positives = 68/103 (66%), Gaps = 5/103 (4%)

Query: 84  VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
             +  ++F++ V  S  +  V+FYAPWCGHC++LAP+++ELA   K +++V IAK+D T 
Sbjct: 3   KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYV 182
           +  +   F +  +PT+L+  +G K +  K++G RTLE L+ ++
Sbjct: 63  N-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  106 bits (267), Expect = 7e-26
 Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 81  EGLVELTEESFEKYVSLGNHF--VKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKI 137
           E ++ LT+++F+ ++   + F  V+FYAPWCGHC+SLAP +++ A   K +   + +AK+
Sbjct: 1   EDVLVLTKDNFDDFIK-SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKV 59

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDK-FQGSRTLETLVNYVSKMKGPLNKKADSP 196
           D T+ + + Q + +  YPTL    +G+     + G R  + +V Y+ K  GP  K+ ++ 
Sbjct: 60  DATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETV 119

Query: 197 DAENASE 203
               A  
Sbjct: 120 ADLEAFL 126

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  100 bits (252), Expect = 7e-24
 Identities = 40/134 (29%), Positives = 76/134 (56%), Gaps = 5/134 (3%)

Query: 77  PIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSI 134
             ++E +  LT+ +F+K+++      VKFYAPWCGHC+ LAP +++ A   K +  ++ +
Sbjct: 28  HFISEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVL 87

Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKAD 194
           A +D T+   + Q F ++ YPT+ +   G  +  + G RT + +V+++ K+ GP   + +
Sbjct: 88  ASVDATEEMELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVE 146

Query: 195 SPDAE--NASEVPV 206
           S       A ++ V
Sbjct: 147 SASEIKLIAKKIFV 160

Length = 477

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 97.0 bits (241), Expect = 7e-24
 Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 13/160 (8%)

Query: 83  LVELTEESFEKYV------SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
           LV L +++FEK        + G  FVKFYAPWC HC+ +AP W+ LA   K +  V++A 
Sbjct: 32  LVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ--VNVAD 89

Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSP 196
           +D T+  ++ + F IK YPTLL  + GK      G R+ E L  +     G   K   +P
Sbjct: 90  LDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFAL---GDFKKALGAP 146

Query: 197 DAENASEVPVKPEPVVSLTSENFN--DVIKSGTVFIKFFA 234
                S   +  +  VS T+E     D   +G   I  FA
Sbjct: 147 VPAPLSFFALTIDFFVSGTNEALRIYDAAFAGFFTISSFA 186

Length = 224

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 12/113 (10%)

Query: 210 PVVSLTSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVI-AKV 266
           PV  LT +NF+ V+ +   T  ++F+APWCGHCK L P + +   +L     G+V  A V
Sbjct: 1   PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKEL----DGLVQVAAV 56

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVY----KNGVRTAE-YNGSRDLEELYQFIL 314
           DC ++ +K LC + GV GFP++ V+    K      E YNG R  + +  F+L
Sbjct: 57  DCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 90.8 bits (226), Expect = 7e-23
 Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 210 PVVSLTSENFND-VIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKV 266
            VV LT  NF+  V+ S     ++F+APWCGHCK LAP W++    L     GIV +  V
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKAL----KGIVKVGAV 56

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFIL 314
           D     S  L  Q GV GFP+I V+  G  +  +Y G R  + +    L
Sbjct: 57  DADVHQS--LAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAAL 103

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 9/104 (8%)

Query: 82  GLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
            +VELT+ +F+K V   N      V+FYAPWCGHC++LAP W++ A   K    V +  +
Sbjct: 1   DVVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI--VKVGAV 56

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDK-FQGSRTLETLVN 180
           D   H+S+ Q + ++ +PT+    +GK   + +QG RT + +V+
Sbjct: 57  DADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVS 100

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 96.4 bits (240), Expect = 3e-22
 Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 201 ASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
           ++E     E V  LT   F+  I     V +KF+APWCGHCKRLAP +++    L + K 
Sbjct: 24  SAEEHFISEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKS 83

Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK---- 315
            IV+A VD T+E+  +L  + GV G+P+I  +  G     Y+G R  + +  +I K    
Sbjct: 84  EIVLASVDATEEM--ELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140

Query: 316 --HKVESHDEL 324
              +VES  E+
Sbjct: 141 AVTEVESASEI 151

Length = 477

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 88.9 bits (221), Expect = 4e-22
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%)

Query: 211 VVSLTSENFNDVIKSGTVF--IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           V++LT E+F +++ +      + F+APWCG C+ L P   +    L   K  + +  VDC
Sbjct: 3   VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARAL---KGKVKVGSVDC 59

Query: 269 TQELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNG-SRDLEELYQFI 313
            +   + LC Q  +  +P+I +Y  N  +   YNG  RD + + +FI
Sbjct: 60  QKY--ESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 83  LVELTEESFEKYVSLGNHF--VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT E F + V        V FYAPWCG CQ+L P  ++ A   K    V +  +DC 
Sbjct: 3   VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQ 60

Query: 141 QHRSICQSFDIKSYPTL 157
           ++ S+CQ  +I++YPT+
Sbjct: 61  KYESLCQQANIRAYPTI 77

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 3/101 (2%)

Query: 84  VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-- 140
           V LT+E F K++    H  V FYAPWCGHC+ + P + + A+  K +    +A +DCT  
Sbjct: 3   VHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP 62

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY 181
           +H ++ + +++K +PT  + E+GK ++K++G RT E ++ +
Sbjct: 63  EHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 84.1 bits (209), Expect = 2e-20
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 89  ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ 147
           E FE+ + S     V F+APWCG C+++APV +ELA   +    V   K+D  ++  + +
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELA---EEYPKVKFVKVDVDENPELAE 57

Query: 148 SFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
            + ++S PT L+ ++GK++D+  G+   E L  ++
Sbjct: 58  EYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 83  LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQ 141
           LV   ++SF+         V FYAPWCGHC+ L PVW E+ +  K+    V + K+D T 
Sbjct: 1   LVLDLDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
           + SI   F ++ YPT+  ++     + ++G RT + +V + +++
Sbjct: 61  YSSIASEFGVRGYPTIKLLKGDLAYN-YRGPRTKDDIVEFANRV 103

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 80.2 bits (198), Expect = 6e-19
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 216 SENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD 275
            ++F DV K     + F+APWCGHCK+L P W E+G +L  +   + + K+D T   S  
Sbjct: 6   DDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-- 63

Query: 276 LCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
           + ++ GV G+P+I + K  +    Y G R  +++ +F  +
Sbjct: 64  IASEFGVRGYPTIKLLKGDL-AYNYRGPRTKDDIVEFANR 102

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 80.3 bits (198), Expect = 6e-19
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 83  LVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +V L    F+  V+ G   FV FY+P C HC  LAP W+E A   + +  + I  ++C  
Sbjct: 3   IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAK--EMDGVIRIGAVNCGD 60

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY 181
            R +C+S  + SYP+L    SG   +K+ G R+ E+LV +
Sbjct: 61  DRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 79.5 bits (197), Expect = 7e-19
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 217 ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD 275
           E F ++IKS   V + F+APWCG CK +AP  EEL  +       +   KVD   + + +
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDV--DENPE 54

Query: 276 LCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
           L  + GV   P+   +KNG       G+   EEL +F+
Sbjct: 55  LAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 79.6 bits (197), Expect = 8e-19
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           +E+  V I +VDCT  ++LC++ ++ GYPTL  FK G   +  K++GTRDL +L  F+
Sbjct: 47  NENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDG--EKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 46/106 (43%), Positives = 59/106 (55%), Gaps = 8/106 (7%)

Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           VV LT  N+  V++ G   I+F+APWC  C++L P WEE      D   GI +AKVD TQ
Sbjct: 3   VVELTDSNWTLVLE-GEWMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQ 59

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGV-RTAEYNGSRDLEELYQFILK 315
           E    L  +  V   P+IY  K+GV R   Y G RD E+L  FI +
Sbjct: 60  EPG--LSGRFFVTALPTIYHAKDGVFR--RYQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 209 EPVVSLTSENFNDVIKSGTVF--IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           +PV+ L + +FN  +        ++F+A WCGHC+  APTW++L   L   +  + +A V
Sbjct: 1   DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAV 60

Query: 267 DCTQELSKDLCNQEGVDGFPSI 288
           DC  E +  LC   GV G+P++
Sbjct: 61  DCADEENVALCRDFGVTGYPTL 82

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 77.7 bits (192), Expect = 5e-18
 Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 2/104 (1%)

Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           VV LT E+F   +K    V + F+APWCGHCK++ P + +  T+L ++  G V+A VDCT
Sbjct: 2   VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKG-VLAAVDCT 60

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
           +     L  +  V GFP+   ++NG    +Y G R  E++ +F+
Sbjct: 61  KPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 38/260 (14%)

Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQ---SLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           E+  E++ +Y+S G   V F    CG  +       V +++A   +  E  +   +D  Q
Sbjct: 236 EINAENYRRYISSGKDLVWF----CGTTEDYDKYKSVVRKVARKLR--EKYAFVWLDTEQ 289

Query: 142 HRS-ICQSFDIKSYPTLLW-IESGKKL-----DKFQGSRTLETLVNYVSKMKGPLNKKAD 194
             S   +   I+ +P L +   +G+ L     + F     L      V   K   + K++
Sbjct: 290 FGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSE 349

Query: 195 SPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGT 252
               E          PV  +    F +++      V ++ +APWCGHCK L P + ELG 
Sbjct: 350 PIPEEQD-------GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGE 402

Query: 253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGV--DGFPSIYVYKNGVRTA-EYNGSRDLEEL 309
           K  DN   I++AK++ T   +      E      FP+I   K G RT   Y G R +E  
Sbjct: 403 KYKDNDS-IIVAKMNGTANETP----LEEFSWSAFPTILFVKAGERTPIPYEGERTVEGF 457

Query: 310 YQFILKH-----KVESHDEL 324
            +F+ KH     + ++H+EL
Sbjct: 458 KEFVNKHATNPFEDDTHEEL 477

Length = 477

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 208 PEPVVSLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           PE +V+L   +F+  + SG + F+ F++P C HC  LAPTW E   K +D    I I  V
Sbjct: 1   PE-IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFA-KEMDGV--IRIGAV 56

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQF 312
           +C  +  + LC  +GV+ +PS+YV+ +G+   +Y G R  E L +F
Sbjct: 57  NCGDD--RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 83  LVELTEESFEKYVSLGNHF--VKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDC 139
           ++ L   SF   +        V+FYA WCGHC++ AP W++LA   +     V +A +DC
Sbjct: 3   VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62

Query: 140 TQ--HRSICQSFDIKSYPTLLWIESGKKL 166
               + ++C+ F +  YPTL +     K 
Sbjct: 63  ADEENVALCRDFGVTGYPTLRYFPPFSKE 91

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 75.1 bits (185), Expect = 5e-17
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)

Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            ELT ++F+K V   N+   V+FYAPWCGHC++L P + + A        V  A +DC +
Sbjct: 3   YELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQV--AAVDCDE 60

Query: 142 --HRSICQSFDIKSYPTLLWIESGKKLDK-----FQGSRTLETLVNYVS 183
             ++ +C  + ++ +PTL      KK  K     + G R+ + +V++V 
Sbjct: 61  DKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 75.1 bits (185), Expect = 5e-17
 Identities = 35/108 (32%), Positives = 64/108 (59%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLD---NKHGIVIAKV 266
           +VSLTS N +D+++S   V + F+A WC   + L P +EE   K+ +   +   +V  KV
Sbjct: 3   IVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKV 62

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNG-VRTAEYNGSRDLEELYQFI 313
           DC +E   D+ ++  ++ +P++ +++NG +   EY G R +E L +F+
Sbjct: 63  DCDKE--SDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 74.6 bits (184), Expect = 6e-17
 Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%)

Query: 86  LTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           LT+ +F++ ++  +    V F+APWCG C+ +AP+ +ELA  +  E  V   K++  ++ 
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEY--EGKVKFVKLNVDENP 58

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            I   + I+S PTLL  ++GK++D+  G+     L   ++K
Sbjct: 59  DIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINK 99

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 74.7 bits (184), Expect = 7e-17
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 83  LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           +VELT+ ++   V  G   ++FYAPWC  CQ L P W+E A  +  +  +++AK+D TQ 
Sbjct: 3   VVELTDSNWTL-VLEGEWMIEFYAPWCPACQQLQPEWEEFAD-WSDDLGINVAKVDVTQE 60

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             +   F + + PT+   + G    ++QG R  E L++++ +
Sbjct: 61  PGLSGRFFVTALPTIYHAKDG-VFRRYQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 16/127 (12%)

Query: 198 AENASEVPVKPEP---VVSLTSENFNDVIK------SGTVFIKFFAPWCGHCKRLAPTWE 248
           A+ A+ V +  E    +V L  +NF  + +      +G  F+KF+APWC HC+++AP WE
Sbjct: 16  ADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWE 75

Query: 249 ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEY-NGSRDLE 307
            L   L   K  + +A +D T+ L  +L  +  + G+P++ ++  G +  +Y  G R  E
Sbjct: 76  RLAKAL---KGQVNVADLDATRAL--NLAKRFAIKGYPTLLLFDKG-KMYQYEGGDRSTE 129

Query: 308 ELYQFIL 314
           +L  F L
Sbjct: 130 KLAAFAL 136

Length = 224

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 214 LTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           LT  NF++ I S    V + F+APWCG CK +AP  EEL  +    +  +   K++  + 
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEY---EGKVKFVKLNVDEN 57

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
              D+  + G+   P++ ++KNG       G+     L Q I K+ 
Sbjct: 58  --PDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKNL 101

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
             D +V + +VDCT    LC++  + GYPT+K F  GS+ E  K+ G R L +L  FI
Sbjct: 45  KGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSK-EPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
            +D  + + +VD T EK L +   ++G+PT+KFF KG +     + G RDL  +  F+NE
Sbjct: 43  KKDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPV--DYEGGRDLEAIVEFVNE 100

Query: 65  QI 66
           + 
Sbjct: 101 KS 102

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 82  GLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTE----EDVSI 134
            +V LT  + +    L +     V FYA WC   Q L P+++E A+  K E      V  
Sbjct: 2   EIVSLTSGNIDD--ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVW 59

Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK-FQGSRTLETLVNYV 182
            K+DC +   I   + I  YPTL    +G  + + ++G R++E L  +V
Sbjct: 60  GKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           E+ + S E  V      V F+APWCG C+ L P  ++LA+ +K +    +AK++C     
Sbjct: 36  EVIQSSREVPV-----LVDFWAPWCGPCKQLTPTLEKLAAEYKGK--FKLAKVNCDAEPM 88

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQG 171
           +   F ++S PT+   + G+ +D FQG
Sbjct: 89  VAAQFGVQSIPTVYAFKDGQPVDGFQG 115

Length = 304

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 192 KADSPDAENASEVPVKPEPVVSLTSENF-NDVIKSGT---VFIKFFAPWCGHCKRLAPTW 247
            A++   E+A   P     +  +T  NF  +VI+S     V + F+APWCG CK+L PT 
Sbjct: 10  AANALAGEDAMAAPG----IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTL 65

Query: 248 EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE 307
           E+L  +    K    +AKV+C  E    +  Q GV   P++Y +K+G     + G++   
Sbjct: 66  EKLAAE---YKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPES 120

Query: 308 ELYQFILKH 316
           +L QF+ K 
Sbjct: 121 QLRQFLDKV 129

Length = 304

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V FYA WC    S  P +  L+S F     ++I   + +   S+   + +  +PT+L   
Sbjct: 23  VLFYASWCPFSASFRPHFNALSSMFPQIRHLAIE--ESSIKPSLLSRYGVVGFPTILLFN 80

Query: 162 SGKKLDKFQGSRTLETLVNYV 182
           S  ++ ++ G+RTL++L  + 
Sbjct: 81  STPRV-RYNGTRTLDSLAAFY 100

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
            +   + + +VD T EK L     ++GYPTLK F+ G E   S + G RD   +  ++ +
Sbjct: 49  KKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNG-EDSVSDYNGPRDADGIVKYMKK 107

Query: 65  QISETPKEPSDK 76
           Q     KE    
Sbjct: 108 QSGPAVKEIETV 119

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 10  VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           V   +VD      L ++  + G+PT+KFFK G   + S + G R    L  FI + 
Sbjct: 51  VKFAKVDADENPDLASEYGVRGFPTIKFFKNG--KKVSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5   SEDSRVTIGQVDCTVE-KQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           + +  V I +VD     K L     ++G+PTLKFF KGS +E  K+ G RDL  L  F+
Sbjct: 48  ANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGS-TEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 79  VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
           +++ ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK
Sbjct: 1   MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAK 58

Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGK 164
           ++  Q+      + I+  PTLL  ++G+
Sbjct: 59  LNIDQNPGTAPKYGIRGIPTLLLFKNGE 86

Length = 109

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 63  NEQISETPKEPSDK-PIVNEGLVELTEESFEKYVSLGNHFV-KFYAPWCGHCQSLAPVWQ 120
           +E+I +  K       + +  ++  T E+ +K +      V  F+APWCG C++ AP+++
Sbjct: 16  DERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFE 75

Query: 121 ELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
           ++A+    +  V   K++    R +   F I+S PT++  ++G+ +D   G+
Sbjct: 76  DVAAERSGK--VRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGA 125

Length = 139

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+AP     + L P+ + LA  ++ +    +AK++C     I Q F +++ PT+    
Sbjct: 17  VDFWAPRSPPSKELLPLLERLAEEYQGQ--FVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74

Query: 162 SGKKLDKFQGSRTLETL 178
           +G+ +D FQG++  E L
Sbjct: 75  AGQPVDGFQGAQPEEQL 91

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 51.5 bits (123), Expect = 7e-09
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS---FDIKSYPTL 157
            V FYAPWC  CQ+L PV  ELA   K    V    +D  +  ++ +    + +   PTL
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNK---GVKFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 158 LWIESGKK 165
           +    G  
Sbjct: 58  VVFGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 51.5 bits (123), Expect = 7e-09
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE-GVDGFPS 287
            + F+APWC  C+ L P   E    L     G+    VD  ++ + +   +  GV G P+
Sbjct: 1   LVLFYAPWCPFCQALRPVLAE----LALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPT 56

Query: 288 IYVYKNGVRTAEY 300
           + V+  G+     
Sbjct: 57  LVVFGPGIGVKYG 69

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           +EE FE+ +         + F+APW   C+ +  V++ELA   +    V    I+  +  
Sbjct: 1   SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAK--EAFPSVLFLSIEAEELP 58

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGS 172
            I + F+I + PT ++  +G  +D+  G+
Sbjct: 59  EISEKFEITAVPTFVFFRNGTIVDRVSGA 87

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 209 EPVVSLTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           + ++ LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+  +    +  + +AK+
Sbjct: 3   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY---QGKLTVAKL 59

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
           +  Q  +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 60  NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104

Length = 109

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 52.6 bits (125), Expect = 1e-08
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
             +      +K   V + F+APWC  C+  AP  EEL  +   +   + +   D   +L+
Sbjct: 21  DGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLA 80

Query: 274 KDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKHK 317
            +      V   P++ ++K+G  V           E L   + +  
Sbjct: 81  AEF--GVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGELL 124

Length = 127

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 87  TEESFEKYVSLGNHFV--KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           ++  FE  +S  N  V   FYA WCG C+ +AP ++E +   K    +   K+D  +   
Sbjct: 7   SQAEFESTLS-QNELVIVDFYAEWCGPCKRIAPFYEECS---KEYTKMVFVKVDVDELSE 62

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGS 172
           + +  +I S PT    ++G  +D   G+
Sbjct: 63  VAEKENITSMPTFKVFKNGSVVDTLLGA 90

Length = 98

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 210 PVVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
            V  +TS+   +   S    V + F+A WCG CKR+AP +EE   +       +V  KVD
Sbjct: 1   MVHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVD 56

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD 305
              ELS ++  +E +   P+  V+KNG       G+ D
Sbjct: 57  -VDELS-EVAEKENITSMPTFKVFKNGSVVDTLLGAND 92

Length = 98

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           V++ T E  + +++    V I F+APWCG C+  AP +E++     +    +   KV+  
Sbjct: 37  VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAA---ERSGKVRFVKVN-- 91

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
            E  ++L  +  +   P+I ++KNG      NG+
Sbjct: 92  TEAERELSARFRIRSIPTIMIFKNGQVVDMLNGA 125

Length = 139

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 217 ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +NF  V++  T   V + F+AP     K L P  E L  +    +   V+AKV+C  +  
Sbjct: 1   QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEE---YQGQFVLAKVNC--DAQ 55

Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ 311
             +  Q GV   P++Y++  G     + G++  E+L Q
Sbjct: 56  PQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQ 93

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELG--TKLLDNKHGIVIAKVDCTQEL---------SKDL 276
           V + F  P C +CK+L     +     + L +   ++   VD ++E+          K+L
Sbjct: 8   VLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKEL 67

Query: 277 CNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI 313
             + GV G P+I     +G   A   G    EE  + +
Sbjct: 68  ARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 47.6 bits (112), Expect = 6e-07
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSF--DIKSYPTL 157
            V F+APWC  C++ AP+ +ELA  +    DV +  ++   ++  +   F   ++S PTL
Sbjct: 36  LVDFWAPWCPPCRAEAPLLEELAEEYG--GDVEVVAVNVDDENPDLAAEFGVAVRSIPTL 93

Query: 158 LWIESGKKLDKF--QGSRTLETLVNYVSKMK 186
           L  + GK++D+         E L++ + ++ 
Sbjct: 94  LLFKDGKEVDRLVGGKVLPKEALIDALGELL 124

Length = 127

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           D  + IG V+C  ++ LC  Q +  YP+L  F  G   E  K+ G R   +L  F
Sbjct: 48  DGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE--KYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
               +     + F+A WC       P +  L +     +H      ++ +      L ++
Sbjct: 13  MAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRH----LAIEESSIKPS-LLSR 67

Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
            GV GFP+I ++ +  R   YNG+R L+ L  F 
Sbjct: 68  YGVVGFPTILLFNSTPR-VRYNGTRTLDSLAAFY 100

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           +  +V  G+VDC  E  +     I  YPTLK F+ G      ++RG R +  L  F+
Sbjct: 53  DAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNG-MMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 81  EGLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
           E +V L+    E             V  YAPWC  CQ++   ++ELA       +V +AK
Sbjct: 1   EAVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKL-AGSNVKVAK 59

Query: 137 IDC-TQHRSICQS-FDIKSYPTLLWI-ESGKKLDKFQG-SRTLETLVNYV 182
            +   + R   +    +KS+PT+L+  ++ ++  K+    R +++L+ +V
Sbjct: 60  FNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 1   MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTN 60
           ML + + S + +  VD T E +L  +  + GYPT+KFF KG+      + G R    + +
Sbjct: 77  MLKE-KKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVN---YSGGRTADGIVS 132

Query: 61  FINE 64
           +I +
Sbjct: 133 WIKK 136

Length = 477

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 80  NEGLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA 135
           ++ +V L+    E  + L N      V  YAPWC  CQ++   ++ELA        V +A
Sbjct: 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKL-AGSGVKVA 402

Query: 136 KI--DCTQHRSICQSFDIKSYPTLL 158
           K   D  Q     Q   + S+PT+L
Sbjct: 403 KFRADGDQKEFAKQELQLGSFPTIL 427

Length = 457

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 233 FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE-GVDGFPSIYVY 291
           +APWC  C+ +  ++EEL  KL      + +AK +   E  ++   +E  +  FP+I  +
Sbjct: 29  YAPWCPFCQAMEASYEELAEKL--AGSNVKVAKFNADGE-QREFAKEELQLKSFPTILFF 85

Query: 292 -KNGVRTAEYNG-SRDLEELYQFI 313
            KN  +  +Y    RD++ L  F+
Sbjct: 86  PKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
             +S V I ++D T    +    E+ G+PT+KF   G +SE   + G R L   + FI +
Sbjct: 395 DAESDVVIAKMDAT-ANDV-PPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452

Query: 65  QISETPKEPSD 75
             +  P E   
Sbjct: 453 H-ATFPLEGKA 462

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 19/141 (13%)

Query: 186 KGPLNKKADSP--DAENASEVPVKPEP-VVSLTSENFNDVIK----SGTVFIKFFAPWCG 238
           KG + ++ +    D  NA+   +     VV+L+     +++K         +  +APWC 
Sbjct: 319 KGNIKEEDNGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCP 378

Query: 239 HCKRLAPTWEELGTKLLDNKHGIVIAK--VDCTQELSKDLCNQE-GVDGFPSIYVY-KNG 294
            C+ +  ++EEL  KL     G+ +AK   D  Q   K+   QE  +  FP+I ++ KN 
Sbjct: 379 FCQAMEASYEELAEKLAG--SGVKVAKFRADGDQ---KEFAKQELQLGSFPTILLFPKNS 433

Query: 295 VRTAEYNGS--RDLEELYQFI 313
            R  +Y  S  RD++ L  F+
Sbjct: 434 SRPIKY-PSEKRDVDSLLSFV 453

Length = 457

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 26  DQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           +  + G+PT+ FF  G +S   K+ G R L  L  FI
Sbjct: 68  EFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 10  VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           V +G VD  V + L     + G+PT+K F  G  S    ++G R    + + 
Sbjct: 51  VKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNS-PQDYQGGRTAKAIVSA 101

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 10  VTIGQVDCTVEK--QLCADQEITGYPTLKFFK--KGSESEASKFRGTRDLPTLTNFINEQ 65
           V +  VDC  E+   LC D  +TGYPTL++F       ++  K  G        N + E 
Sbjct: 55  VRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDV---NELREA 111

Query: 66  I 66
           +
Sbjct: 112 L 112

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           E+  +SF+K      + +K  + WC  C  + PVW+E+    +    V IA ++    R 
Sbjct: 17  EIVPKSFKK-----PYLIKITSDWCFSCIHIEPVWKEVIQELEPLG-VGIATVNAGHERR 70

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + +     S P ++ I +G+       S T + +V++V K
Sbjct: 71  LARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK 110

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|239363 cd03065, PDI_b_Calsequestrin_N, PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWE------ELGTKLLDNKHGIVIA 264
           V+ L  +N+  V+K   V    +       K     ++      EL  ++L++K GI   
Sbjct: 11  VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFG 69

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314
            VD  ++    +  + G+D   SIYV+K+     EY+G    + L +F+L
Sbjct: 70  LVDSKKDAK--VAKKLGLDEEDSIYVFKDD-EVIEYDGEFAADTLVEFLL 116

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2+ release channel. In addition to its role as a calcium ion buffer, calsequestrin also regulates the activity of the RyR channel, coordinating the release of calcium ions from the SR with the loading of the calcium store. The N-terminal TRX-fold domain (or domain I) mediates front-to-front dimer interaction, an important feature in the formation of calsequestrin polymers. Length = 120

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 7   DSRVTIGQVDCTVE--KQLCADQEITGYPTLKFFK--KGSESEASK-FRGTRDLPTLTNF 61
           D  V +  VDC  +  K LC    + G+PTLK F+  K +   A + + G R    + +F
Sbjct: 48  DGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDF 107

Query: 62  I 62
           +
Sbjct: 108 V 108

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKG 41
          V +G VDC   + LC    I  YPT++ +   
Sbjct: 52 VKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 190 NKKADSPDAENASEVP------VKPEPVVSLTSENFNDVIK----SGTVFIKFFAPWCGH 239
           N K ++ D                   VVSL+     +++K         +  +APWC  
Sbjct: 326 NIKEETLDGAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPF 385

Query: 240 CKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE-GVDGFPSIYVY-KNGVRT 297
           C+ +  ++ EL  KL  +  G+ +AK     +  K+   QE  +  FP+I  + K+  R 
Sbjct: 386 CQAMEASYLELAEKLAGS--GVKVAKFRADGD-QKEFAKQELQLGSFPTILFFPKHSSRP 442

Query: 298 AEY-NGSRDLEELYQFI 313
            +Y +  RD++ L  F+
Sbjct: 443 IKYPSEKRDVDSLMSFV 459

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V + +P CG C++L P+  ++   F  +  V   +ID  + + I ++  I   PT+ + +
Sbjct: 18  VLYTSPTCGPCRTLKPILNKVIDEF--DGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFK 75

Query: 162 SGKKLDKFQG 171
             + + +  G
Sbjct: 76  DKELVKEISG 85

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 6   EDSRVTIGQVDCTVEKQ--LCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
           ED +  +  VDCT  +   L  +  + G+PT K+F+ G   E  K+ G R    +  F+
Sbjct: 48  EDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVE--KYEGERTAEDIIEFM 104

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 80  NEGLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSI 134
           +  +V L+    E  + L        V  YAPWC  CQ++   + ELA         V+ 
Sbjct: 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAK 409

Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWI--ESGKKLDKFQGSRTLETLVNYVSKMK 186
            + D  Q     Q   + S+PT+L+    S + +      R +++L+++V+ ++
Sbjct: 410 FRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 6  EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
          E  +V   +VD     +L  +  +   PT  FFK G   E  +  G      L  F+ 
Sbjct: 38 EYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG--KEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           + + + +P CG C+ L P   ++  +     H + I  +D  QE+++      G+ G P+
Sbjct: 16  ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEI-DIDEDQEIAE----AAGIMGTPT 70

Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFI 313
           +  +K+     E +G +   E  +FI
Sbjct: 71  VQFFKDKELVKEISGVKMKSEYREFI 96

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 28/99 (28%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDN----------------------KHGIVIAK 265
           V + F+A WC  C+   P  E L  +  D+                      K+GI    
Sbjct: 22  VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPV 81

Query: 266 V-DCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNG 302
           + D   EL+K      GV G P+ ++  ++G   A + G
Sbjct: 82  LLDPDGELAKAY----GVRGLPTTFLIDRDGRIRARHVG 116

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG0190|consensus	493		100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
KOG0191|consensus	383		99.97
KOG0191|consensus	383		99.97
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.96
KOG0190|consensus	493		99.88
PTZ00102	477	disulphide isomerase; Provisional	99.87
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.87
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.86
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.86
KOG0910|consensus	150		99.86
KOG4277|consensus	468		99.86
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.85
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.85
KOG0910|consensus	150		99.84
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.84
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.84
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.83
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.82
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.82
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.82
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.82
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.82
PTZ00062	204	glutaredoxin; Provisional	99.82
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.81
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.81
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.8
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.8
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.8
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.8
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.8
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.79
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.79
PRK09381	109	trxA thioredoxin; Provisional	99.79
PHA02278	103	thioredoxin-like protein	99.78
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.78
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.77
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.77
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.77
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.77
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.77
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.76
PRK10996	139	thioredoxin 2; Provisional	99.76
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.76
PHA02278	103	thioredoxin-like protein	99.76
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.75
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.75
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.75
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.75
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.75
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.74
PRK09381	109	trxA thioredoxin; Provisional	99.74
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.74
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.74
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.74
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.73
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.73
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.73
PRK10996	139	thioredoxin 2; Provisional	99.73
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.73
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.73
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.73
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.73
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.72
KOG4277|consensus	468		99.72
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.72
KOG0912|consensus	375		99.72
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.72
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.72
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.71
KOG0912|consensus	375		99.71
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.7
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.7
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.7
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.69
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.69
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.68
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.68
KOG0907|consensus	106		99.68
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.68
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.67
KOG0907|consensus	106		99.67
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.66
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.66
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.65
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.65
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.65
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.64
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.64
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.64
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.64
PLN02309	457	5'-adenylylsulfate reductase	99.63
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.63
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.63
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.63
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.62
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.62
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.61
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.61
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.61
PLN02309	457	5'-adenylylsulfate reductase	99.61
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.61
PTZ00051	98	thioredoxin; Provisional	99.6
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.59
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.59
KOG0908|consensus	288		99.59
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.59
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.58
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.58
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.58
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.57
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.57
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.55
PTZ00051	98	thioredoxin; Provisional	99.55
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.55
KOG0908|consensus	288		99.54
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.52
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.52
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.52
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.51
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.5
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.5
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.48
KOG1731|consensus	606		99.48
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.48
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.43
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.41
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.4
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.37
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.36
PTZ00062	204	glutaredoxin; Provisional	99.34
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.3
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.27
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.25
PHA02125	75	thioredoxin-like protein	99.24
PHA02125	75	thioredoxin-like protein	99.24
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.23
KOG1731|consensus	606		99.22
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.21
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.21
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.2
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.18
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.18
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.18
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.17
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.15
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.13
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.13
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.12
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.1
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.1
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.09
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.08
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.07
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.07
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.06
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.06
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.05
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.05
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.05
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.04
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.04
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.03
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.03
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.03
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.0
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.99
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.98
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.96
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.95
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.94
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.94
KOG0913|consensus	248		98.94
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.92
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.91
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.91
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.91
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.89
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.89
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.87
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.87
KOG0913|consensus	248		98.84
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.83
KOG0914|consensus	265		98.82
KOG0914|consensus	265		98.82
KOG0911|consensus	227		98.81
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.8
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.78
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.78
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.77
smart00594	122	UAS UAS domain.	98.76
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.73
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.72
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.71
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.7
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.69
smart00594	122	UAS UAS domain.	98.66
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.66
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.66
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.65
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.63
PTZ00056	199	glutathione peroxidase; Provisional	98.61
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.61
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.6
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.6
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.59
PLN02412	167	probable glutathione peroxidase	98.55
PTZ00056	199	glutathione peroxidase; Provisional	98.54
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.53
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.51
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.51
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.49
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.48
PLN02412	167	probable glutathione peroxidase	98.48
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.48
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.47
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.47
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.46
KOG2501|consensus	157		98.45
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.45
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.43
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.43
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.42
PF13728	215	TraF: F plasmid transfer operon protein	98.42
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.42
KOG1672|consensus	211		98.41
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.4
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.4
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.38
KOG2501|consensus	157		98.37
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.36
PTZ00256	183	glutathione peroxidase; Provisional	98.34
KOG2603|consensus	331		98.34
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.33
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.33
KOG1672|consensus	211		98.33
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.3
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.29
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.29
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.29
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.28
PF13728	215	TraF: F plasmid transfer operon protein	98.28
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.26
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.23
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.22
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.19
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.19
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.16
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.13
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.12
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.11
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.1
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.09
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.08
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.06
PRK11200	85	grxA glutaredoxin 1; Provisional	98.05
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.05
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.02
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.02
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.0
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.0
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.99
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.99
PTZ00256	183	glutathione peroxidase; Provisional	97.99
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.98
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.97
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.96
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.96
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.95
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.95
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.94
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.94
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.92
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.87
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.86
PRK11200	85	grxA glutaredoxin 1; Provisional	97.85
KOG2603|consensus	331		97.85
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.83
PRK15000	200	peroxidase; Provisional	97.8
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.8
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.8
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.79
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.77
PRK15000	200	peroxidase; Provisional	97.77
KOG3425|consensus	128		97.74
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.73
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.71
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.69
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.67
PRK13190	202	putative peroxiredoxin; Provisional	97.66
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.66
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.65
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.62
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.61
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.61
KOG3425|consensus	128		97.58
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.58
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.58
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.56
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.56
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.55
PRK13190	202	putative peroxiredoxin; Provisional	97.54
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.51
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.51
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.51
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.49
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.47
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.47
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.43
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.41
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.41
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.4
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.39
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.34
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.33
KOG0911|consensus	227		97.33
KOG3414|consensus	142		97.32
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.29
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.29
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.24
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.24
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.23
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.2
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.19
PRK13599	215	putative peroxiredoxin; Provisional	97.16
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.16
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.15
PRK13189	222	peroxiredoxin; Provisional	97.15
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.13
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.09
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.08
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.07
PRK13191	215	putative peroxiredoxin; Provisional	97.07
PRK13599	215	putative peroxiredoxin; Provisional	97.07
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.05
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.03
PRK13191	215	putative peroxiredoxin; Provisional	97.03
PRK13189	222	peroxiredoxin; Provisional	96.99
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	96.98
KOG3414|consensus	142		96.94
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.93
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.93
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.87
PRK10329	81	glutaredoxin-like protein; Provisional	96.86
PRK10329	81	glutaredoxin-like protein; Provisional	96.85
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.8
KOG3171|consensus	273		96.79
PTZ00253	199	tryparedoxin peroxidase; Provisional	96.78
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.76
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.76
PHA03050	108	glutaredoxin; Provisional	96.75
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.73
PTZ00253	199	tryparedoxin peroxidase; Provisional	96.71
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.7
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	96.66
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.62
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.59
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.58
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	96.57
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.51
PHA03050	108	glutaredoxin; Provisional	96.48
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.48
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.43
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.43
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	96.39
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.38
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	96.35
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.35
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.33
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.32
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	96.27
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.27
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.25
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.19
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.18
KOG3171|consensus	273		96.13
KOG3170|consensus	240		96.08
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	95.95
PRK10824	115	glutaredoxin-4; Provisional	95.92
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.86
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.83
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.68
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	95.66
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	95.65
KOG3170|consensus	240		95.58
PRK10638	83	glutaredoxin 3; Provisional	95.53
KOG1752|consensus	104		95.31
PRK10638	83	glutaredoxin 3; Provisional	95.29
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.29
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	95.25
PRK10824	115	glutaredoxin-4; Provisional	95.19
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.06
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	95.04
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.03
KOG1752|consensus	104		93.09
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	92.44
KOG2640|consensus	319		92.41
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	92.4
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	92.31
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	92.28
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	91.94
COG3019	149	Predicted metal-binding protein [General function	91.92
cd02978	72	KaiB_like KaiB-like family; composed of the circad	91.66
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	91.66
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	91.25
KOG2640|consensus	319		90.06
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	89.69
cd02978	72	KaiB_like KaiB-like family; composed of the circad	89.27
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	88.62
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	88.05
KOG2507|consensus	506		87.31
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	86.48
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	85.97
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	85.93
KOG2507|consensus	506		84.83
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	84.8
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	84.77
KOG2792|consensus	280		84.73
PRK09301	103	circadian clock protein KaiB; Provisional	84.44
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	83.42
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	83.19
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	83.0
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	82.9
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	82.85
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	82.36
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	82.1
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	82.05
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	81.92
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	81.87
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	81.41
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	80.14
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	80.04

>KOG0190|consensus

Probab=100.00  E-value=3.3e-40  Score=288.76  Aligned_cols=302  Identities=30%  Similarity=0.516  Sum_probs=229.6

Q ss_pred             CCCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCC-------------
Q psy14086          5 SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPK-------------   71 (324)
Q Consensus         5 ~~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~-------------   71 (324)
                      ++++.|.+++|||+++.++|.+|+|++|||+++|++|. . ...|.|+|++++|+.|++++.+|+..             
T Consensus        73 e~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~-~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~  150 (493)
T KOG0190|consen   73 EEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGR-S-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLS  150 (493)
T ss_pred             ccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCC-c-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhcc
Confidence            45678999999999999999999999999999999776 3 68999999999999999999998543             


Q ss_pred             ---------------------------------------------CCCCCC---C-C----CCC---c-eEcChhhHHHH
Q psy14086         72 ---------------------------------------------EPSDKP---I-V----NEG---L-VELTEESFEKY   94 (324)
Q Consensus        72 ---------------------------------------------~~~~~~---~-~----~~~---~-~~l~~~~f~~~   94 (324)
                                                                   ......   . .    ...   . ..++.+.+.++
T Consensus       151 ~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~F  230 (493)
T KOG0190|consen  151 KKDVVVIGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKF  230 (493)
T ss_pred             CCceEEEEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHH
Confidence                                                         000000   0 0    000   0 12223333333


Q ss_pred             hc--------------------CC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc
Q psy14086         95 VS--------------------LG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK  152 (324)
Q Consensus        95 ~~--------------------~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~  152 (324)
                      ++                    ..  ..+.+|....|.......+.+.++|++|++  ++.|+.+|...+..+++.||+.
T Consensus       231 i~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d~e~~~~~~~~~Gl~  308 (493)
T KOG0190|consen  231 IQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILIDPESFARVLEFFGLE  308 (493)
T ss_pred             HHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEChHHhhHHHHhcCcc
Confidence            31                    11  013444455676778899999999999999  8999999988888899999998


Q ss_pred             --ccc-eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC--C
Q psy14086        153 --SYP-TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS--G  226 (324)
Q Consensus       153 --~~P-~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~  226 (324)
                        ..| .+++... +..+..-.+..+.++|..|+.+++.|+.+.+..++.   +|..+...+|..+.+++|++++.+  +
T Consensus       309 ~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqp---iPe~~~~~pVkvvVgknfd~iv~de~K  385 (493)
T KOG0190|consen  309 EEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQP---IPEDNDRSPVKVVVGKNFDDIVLDEGK  385 (493)
T ss_pred             cccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCC---CCcccccCCeEEEeecCHHHHhhcccc
Confidence              456 2233222 233332234478889999999999999776654322   444444478999999999999954  5


Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCe--eeeeecCCC
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV--RTAEYNGSR  304 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~--~~~~~~g~~  304 (324)
                      .++|.||+|||+||+++.|+|++||.+ +.+..++.+++||++.  |+ + ....++++|||++|+.|.  .+..|.|.+
T Consensus       386 dVLvEfyAPWCgHCk~laP~~eeLAe~-~~~~~~vviAKmDaTa--Nd-~-~~~~~~~fPTI~~~pag~k~~pv~y~g~R  460 (493)
T KOG0190|consen  386 DVLVEFYAPWCGHCKALAPIYEELAEK-YKDDENVVIAKMDATA--ND-V-PSLKVDGFPTILFFPAGHKSNPVIYNGDR  460 (493)
T ss_pred             ceEEEEcCcccchhhhhhhHHHHHHHH-hcCCCCcEEEEecccc--cc-C-ccccccccceEEEecCCCCCCCcccCCCc
Confidence            899999999999999999999999954 7777899999999999  44 2 456788899999999885  467899999


Q ss_pred             CHHHHHHHHHhhcc
Q psy14086        305 DLEELYQFILKHKV  318 (324)
Q Consensus       305 ~~~~l~~fi~~~~~  318 (324)
                      +.+++..||.+.-.
T Consensus       461 ~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  461 TLEDLKKFIKKSAT  474 (493)
T ss_pred             chHHHHhhhccCCC
Confidence            99999999987654

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=2.1e-34  Score=264.85  Aligned_cols=298  Identities=25%  Similarity=0.485  Sum_probs=231.9

Q ss_pred             CCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCC-----------
Q psy14086          7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSD-----------   75 (324)
Q Consensus         7 ~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~-----------   75 (324)
                      ..+|.++.|||++++++|++|+|.++||+++|++|+   ...|.|.++.++|++|+.+..++.......           
T Consensus        82 ~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~---~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~  158 (477)
T PTZ00102         82 KSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN---PVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKI  158 (477)
T ss_pred             CCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc---eEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccC
Confidence            457999999999999999999999999999999766   349999999999999999988763320000           


Q ss_pred             ---------------------------------------CC------CC-----------------------CCCceEcC
Q psy14086         76 ---------------------------------------KP------IV-----------------------NEGLVELT   87 (324)
Q Consensus        76 ---------------------------------------~~------~~-----------------------~~~~~~l~   87 (324)
                                                             ..      ..                       ...+..++
T Consensus       159 ~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~  238 (477)
T PTZ00102        159 FVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEIN  238 (477)
T ss_pred             cEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecC
Confidence                                                   00      00                       01134455


Q ss_pred             hhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh-hhhhCCccccceEEEEeCCeEe
Q psy14086         88 EESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-ICQSFDIKSYPTLLWIESGKKL  166 (324)
Q Consensus        88 ~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~P~~~~~~~g~~~  166 (324)
                      .+++..+...+..++.|. ..+.....+.+.++++|+++++  ++.|+.+|++.... +++.+|+..+|++++...+..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y  315 (477)
T PTZ00102        239 AENYRRYISSGKDLVWFC-GTTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRY  315 (477)
T ss_pred             ccchHHHhcCCccEEEEe-cCHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCccc
Confidence            556655555554444333 3456667789999999999998  89999999998886 8999999999998887643322


Q ss_pred             eeecCC----CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc--CCcEEEEEeCCCChhh
Q psy14086        167 DKFQGS----RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHC  240 (324)
Q Consensus       167 ~~~~g~----~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C  240 (324)
                       .+.+.    .+.+.|.+|++++..++.+....+.+    .+......+..+++++|++.+.  +++++|.||++||++|
T Consensus       316 -~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~----~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C  390 (477)
T PTZ00102        316 -LLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEP----IPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHC  390 (477)
T ss_pred             -CCCccccccCCHHHHHHHHHHHhCCCCCcccccCC----CCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHH
Confidence             23332    68999999999999987654432211    1222356799999999998853  3589999999999999


Q ss_pred             hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeee-eeecCCCCHHHHHHHHHhhcc
Q psy14086        241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT-AEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~-~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +.+.|.|+++|.. +.....+.++.+|++.  ++..++.++++++||+++|++|++. ..|.|.++.+.|.+||.++..
T Consensus       391 ~~~~p~~~~~a~~-~~~~~~v~~~~id~~~--~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  466 (477)
T PTZ00102        391 KNLEPVYNELGEK-YKDNDSIIVAKMNGTA--NETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT  466 (477)
T ss_pred             HHHHHHHHHHHHH-hccCCcEEEEEEECCC--CccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence            9999999999955 5444569999999998  7888899999999999999987654 579999999999999999876

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=2.8e-31  Score=243.50  Aligned_cols=301  Identities=29%  Similarity=0.483  Sum_probs=228.8

Q ss_pred             CCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCC---------------
Q psy14086          7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPK---------------   71 (324)
Q Consensus         7 ~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~---------------   71 (324)
                      .+.|.++.|||++++++|++|+|.++||+++|++|+ .....|.|.++.++|.+|+.+.+++...               
T Consensus        51 ~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~  129 (462)
T TIGR01130        51 GPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE-DSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADD  129 (462)
T ss_pred             CCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc-cceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC
Confidence            356999999999999999999999999999999766 2257899999999999999988765321               


Q ss_pred             --------CC---------------------------C---------CCCC----------C------------------
Q psy14086         72 --------EP---------------------------S---------DKPI----------V------------------   79 (324)
Q Consensus        72 --------~~---------------------------~---------~~~~----------~------------------   79 (324)
                              ..                           .         ....          .                  
T Consensus       130 ~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (462)
T TIGR01130       130 DVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEK  209 (462)
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHH
Confidence                    00                           0         0000          0                  


Q ss_pred             ------CCCceEcChhhHHHHhcCCCEEEEEe--CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc
Q psy14086         80 ------NEGLVELTEESFEKYVSLGNHFVKFY--APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI  151 (324)
Q Consensus        80 ------~~~~~~l~~~~f~~~~~~~~~~v~f~--~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i  151 (324)
                            ...+..++..++......++.++.|+  .....+|+.+...|+++|+++++ ..+.|+.+|+.....+++.+|+
T Consensus       210 fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~~  288 (462)
T TIGR01130       210 FIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFGL  288 (462)
T ss_pred             HHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcCC
Confidence                  00123333334444444444443333  34556689999999999999985 3799999999999999999999


Q ss_pred             c--ccceEEEEeCCe-EeeeecC-CCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc--C
Q psy14086        152 K--SYPTLLWIESGK-KLDKFQG-SRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK--S  225 (324)
Q Consensus       152 ~--~~P~~~~~~~g~-~~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~  225 (324)
                      .  .+|+++++.... ....+.+ ..+.++|.+|+++.++|..+....+.    ..+...+..+..+++++|.+.+.  +
T Consensus       289 ~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se----~~p~~~~~~v~~l~~~~f~~~v~~~~  364 (462)
T TIGR01130       289 KAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSE----PIPEDDEGPVKVLVGKNFDEIVLDET  364 (462)
T ss_pred             CccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccC----CCCccCCCccEEeeCcCHHHHhccCC
Confidence            8  699999997643 2333444 78999999999999998865443221    11222456799999999999874  3


Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC-CCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee--eeeecC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN-KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR--TAEYNG  302 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~--~~~~~g  302 (324)
                      ++++|.||++||++|+.+.|.+++++.. +.. ..++.|+.+|++.  + ++.. +++.++|++++|++|..  ...|.|
T Consensus       365 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~-~~~~~~~i~~~~id~~~--n-~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g  439 (462)
T TIGR01130       365 KDVLVEFYAPWCGHCKNLAPIYEELAEK-YKDAESDVVIAKMDATA--N-DVPP-FEVEGFPTIKFVPAGKKSEPVPYDG  439 (462)
T ss_pred             CeEEEEEECCCCHhHHHHHHHHHHHHHH-hhcCCCcEEEEEEECCC--C-ccCC-CCccccCEEEEEeCCCCcCceEecC
Confidence            5899999999999999999999999966 444 3369999999988  4 3444 99999999999998865  357899


Q ss_pred             CCCHHHHHHHHHhhcc
Q psy14086        303 SRDLEELYQFILKHKV  318 (324)
Q Consensus       303 ~~~~~~l~~fi~~~~~  318 (324)
                      ..+.+.|.+||.++..
T Consensus       440 ~~~~~~l~~~l~~~~~  455 (462)
T TIGR01130       440 DRTLEDFSKFIAKHAT  455 (462)
T ss_pred             cCCHHHHHHHHHhcCC
Confidence            9999999999998864

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0191|consensus

Probab=99.97  E-value=2.8e-29  Score=223.09  Aligned_cols=291  Identities=32%  Similarity=0.658  Sum_probs=222.1

Q ss_pred             ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCC-CceEcC
Q psy14086          9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNE-GLVELT   87 (324)
Q Consensus         9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~   87 (324)
                      .+.++.|||++++.+|++|+|++|||+++|..+  ...+.|.|.++++.+..|+...+.+..      ..... .+..++
T Consensus        79 ~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~l~  150 (383)
T KOG0191|consen   79 KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG--KKPIDYSGPRNAESLAEFLIKELEPSV------KKLVEGEVFELT  150 (383)
T ss_pred             ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC--CceeeccCcccHHHHHHHHHHhhcccc------ccccCCceEEcc
Confidence            789999999999999999999999999999966  468999999999999999998886511      12222 489999


Q ss_pred             hhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         88 EESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        88 ~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      ..+|...+  .+..++|.||+|||++|+.+.|.|.+++..++....+.++.+||+....++.+++|+.+|++.+|++|..
T Consensus       151 ~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~  230 (383)
T KOG0191|consen  151 KDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE  230 (383)
T ss_pred             ccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc
Confidence            99999876  4457899999999999999999999999999755589999999998899999999999999999999877


Q ss_pred             -eeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEEEeCCCChhhhhhh
Q psy14086        166 -LDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLA  244 (324)
Q Consensus       166 -~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~  244 (324)
                       ...|.|.++.+.|..|++...............   .........+.+. ...++........++.|+++||++|....
T Consensus       231 ~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T KOG0191|consen  231 DIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEI---EDKDTFSPTFLDT-AEFLDSLEKKKNKFVKFYAPWCGHCGGFA  306 (383)
T ss_pred             ccccccccccHHHHHHHHHhhcCCCCCCcccccc---cCccccccchhhh-hhhhhhhHHhhhhHhhhhcchhhcccccc
Confidence             666788999999999999988753110000000   0000000111111 11122222234689999999999999999


Q ss_pred             HhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC-HHHHHHHH
Q psy14086        245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD-LEELYQFI  313 (324)
Q Consensus       245 ~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~-~~~l~~fi  313 (324)
                      |.+...+.........+.+..+++..  ...++....++.+|++.++..|.......|.+. .+.+..+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  374 (383)
T KOG0191|consen  307 PVYEDKAELGYPDLSKIKAAKLDCAL--LKSLCQKAIVRGYPTIKLYNYGKNPSNIVGLILGIQALDSRD  374 (383)
T ss_pred             hhHHHHHhccccccccceeecccccc--ccchhhHhhhhcCceeEeeccccccccccCceeehhhhhhhc
Confidence            99999985523344568999999988  666888999999999999988766544555432 34443333

>KOG0191|consensus

Probab=99.97  E-value=4.7e-29  Score=221.62  Aligned_cols=217  Identities=37%  Similarity=0.785  Sum_probs=185.8

Q ss_pred             eEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         84 VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        84 ~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      ..++...|....  ..+.++|.||+|||++|+.+.|+|.++++.+++  .+.++.|||+.+..+|+.|+|+++|++.+|.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~  109 (383)
T KOG0191|consen   32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR  109 (383)
T ss_pred             hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence            333344444444  456899999999999999999999999999998  8999999999999999999999999999999


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCC-CeeEeccccccccccC--CcEEEEEeCCCCh
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPE-PVVSLTSENFNDVIKS--GTVFIKFFAPWCG  238 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~  238 (324)
                      +|.....|.|..+.+.+.+|+...+.......              .. .+..++..++...+..  .+++|.||+|||+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~  175 (383)
T KOG0191|consen  110 PGKKPIDYSGPRNAESLAEFLIKELEPSVKKL--------------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCG  175 (383)
T ss_pred             CCCceeeccCcccHHHHHHHHHHhhccccccc--------------cCCceEEccccchhhhhhccCcceEEEEeccccH
Confidence            99666679999999999999999888542211              13 4888999999887744  5799999999999


Q ss_pred             hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-eeeecCCCCHHHHHHHHHhhc
Q psy14086        239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-TAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       239 ~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +|+.+.|.|++++.. +.....+.++.+|++.  ...++..++|.++|++.+|+.|.. ...|.|.++.+.+.+|+.+..
T Consensus       176 ~ck~l~~~~~~~a~~-~~~~~~v~~~~~d~~~--~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~  252 (383)
T KOG0191|consen  176 HCKKLAPEWEKLAKL-LKSKENVELGKIDATV--HKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE  252 (383)
T ss_pred             HhhhcChHHHHHHHH-hccCcceEEEeeccch--HHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence            999999999999965 5445589999999997  789999999999999999998877 667889999999999999876


Q ss_pred             cc
Q psy14086        318 VE  319 (324)
Q Consensus       318 ~~  319 (324)
                      ..
T Consensus       253 ~~  254 (383)
T KOG0191|consen  253 RR  254 (383)
T ss_pred             CC
Confidence            54

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.96  E-value=8.8e-28  Score=196.52  Aligned_cols=199  Identities=17%  Similarity=0.270  Sum_probs=158.9

Q ss_pred             hhhHHHHhcCCCEEEEEeC---CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         88 EESFEKYVSLGNHFVKFYA---PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        88 ~~~f~~~~~~~~~~v~f~~---~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      .+.|.+.++++..++.|++   +||++|+.+.|.+++++..+.. -.+.++.+|.++++.++++|+|.++||+++|++|+
T Consensus        10 ~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~   88 (215)
T TIGR02187        10 KELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK   88 (215)
T ss_pred             HHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence            4455565666666888988   9999999999999999999843 24668888888999999999999999999999998


Q ss_pred             Ee-eeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccc--ccCCcEEEEEeCCCChhhh
Q psy14086        165 KL-DKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDV--IKSGTVFIKFFAPWCGHCK  241 (324)
Q Consensus       165 ~~-~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~~~v~f~~~~c~~C~  241 (324)
                      .. .++.|..+.+++.+||+..++-.                   .....++.++.+.+  ..+...++.||++||++|+
T Consensus        89 ~~~~~~~G~~~~~~l~~~i~~~~~~~-------------------~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~  149 (215)
T TIGR02187        89 DGGIRYTGIPAGYEFAALIEDIVRVS-------------------QGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCP  149 (215)
T ss_pred             eeEEEEeecCCHHHHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcH
Confidence            86 48999999999999999886421                   01122333332222  2233466679999999999


Q ss_pred             hhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        242 RLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      .+.+.+++++.+ .   ..+.+..+|.+.  +++++.+++|.++||++++++|..   +.|..+.++|.+||.+
T Consensus       150 ~~~~~l~~l~~~-~---~~i~~~~vD~~~--~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       150 YAVLMAHKFALA-N---DKILGEMIEANE--NPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHHHHHHHHHHh-c---CceEEEEEeCCC--CHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence            999999999844 2   268899999998  899999999999999999987753   7898899999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0190|consensus

Probab=99.88  E-value=1e-21  Score=172.84  Aligned_cols=206  Identities=27%  Similarity=0.533  Sum_probs=159.5

Q ss_pred             CCCCCceEcChhhHHHHhcCCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccc
Q psy14086         78 IVNEGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ...+.+..|+.++|...+.... ++|.||||||++|+.++|++.++|..+... ..+..++|||+++..+|.+|+|++||
T Consensus        22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            3456899999999999997775 579999999999999999999999999875 57999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEec-cccccccccCC-cEEEEEe
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLT-SENFNDVIKSG-TVFIKFF  233 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~-~~~v~f~  233 (324)
                      |+.+|++|.....|.|+++++.|+.|+.+..+                     +++..|. .+.+..++.++ .++|.|+
T Consensus       102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~g---------------------Pa~~~l~~~~~a~~~l~~~~~~vig~F  160 (493)
T KOG0190|consen  102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSG---------------------PASKTLKTVDEAEEFLSKKDVVVIGFF  160 (493)
T ss_pred             eEEEEecCCcceeccCcccHHHHHHHHHhccC---------------------CCceecccHHHHHhhccCCceEEEEEe
Confidence            99999999876779999999999999999887                     3445555 34466666554 5666676


Q ss_pred             CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecC-eeeeeecCCCCHHHHH
Q psy14086        234 APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNG-VRTAEYNGSRDLEELY  310 (324)
Q Consensus       234 ~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g-~~~~~~~g~~~~~~l~  310 (324)
                      ...-+.   . ..+..+|..+. .  .+.|+.   +.  +.++..++++.  +.|-+++++.. .....|.|..+.+.|.
T Consensus       161 ~d~~~~---~-~~~~~~a~~l~-~--d~~F~~---ts--~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~  228 (493)
T KOG0190|consen  161 KDLESL---A-ESFFDAASKLR-D--DYKFAH---TS--DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLK  228 (493)
T ss_pred             cccccc---h-HHHHHHHHhcc-c--cceeec---cC--cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHH
Confidence            643221   1 33344443533 3  578873   33  57778888774  35557777654 3344568899999999


Q ss_pred             HHHHhh
Q psy14086        311 QFILKH  316 (324)
Q Consensus       311 ~fi~~~  316 (324)
                      +||..+
T Consensus       229 ~Fi~~~  234 (493)
T KOG0190|consen  229 KFIQEN  234 (493)
T ss_pred             HHHHHh
Confidence            999865

>PTZ00102 disulphide isomerase; Provisional

Probab=99.87  E-value=8.1e-21  Score=174.87  Aligned_cols=178  Identities=21%  Similarity=0.441  Sum_probs=146.8

Q ss_pred             CCceEEEEeeCccchh-hhccCCCccCCceEEEecCCcccccccCCC----CChHHHHHHHHhhhcCCCC----CCCCCC
Q psy14086          7 DSRVTIGQVDCTVEKQ-LCADQEITGYPTLKFFKKGSESEASKFRGT----RDLPTLTNFINEQISETPK----EPSDKP   77 (324)
Q Consensus         7 ~~~i~~~~vd~~~~~~-l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~----~~~~~i~~~~~~~~~~~~~----~~~~~~   77 (324)
                      ...+.|+.+|+.+... +++.+|+..+|++.+...++   ...+.+.    .+.++|.+|+.+...+...    ..+.+.
T Consensus       277 ~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~---~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~  353 (477)
T PTZ00102        277 REKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAG---RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPE  353 (477)
T ss_pred             cCceEEEEEechhcchhHHHhcCcccCceEEEEcCCc---ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCC
Confidence            3568999999999886 99999999999998887444   3344443    6899999999987764221    111122


Q ss_pred             CCCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         78 IVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      .....+..++.++|++.+  .+++++|.||++||++|+.+.|.|++++..+++...+.++.+|++.+...++.++++++|
T Consensus       354 ~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P  433 (477)
T PTZ00102        354 EQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP  433 (477)
T ss_pred             CCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence            235578999999999885  345799999999999999999999999999986557999999999999999999999999


Q ss_pred             eEEEEeCCeEe-eeecCCCCHHHHHHHHHhhhC
Q psy14086        156 TLLWIESGKKL-DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       156 ~~~~~~~g~~~-~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++++|++|+.. .+|.|.++.++|.+||.+...
T Consensus       434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  466 (477)
T PTZ00102        434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHAT  466 (477)
T ss_pred             eEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence            99999987654 579999999999999999876

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.87  E-value=1.9e-21  Score=140.97  Aligned_cols=100  Identities=14%  Similarity=0.327  Sum_probs=91.3

Q ss_pred             CCceEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhh-hhCCccccc
Q psy14086         81 EGLVELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC-QSFDIKSYP  155 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~-~~~~i~~~P  155 (324)
                      +.+.+|++++|++.+    .++.++|.||++||++|+.+.|.|+++++.+++  .+.|++|||+.+..+| ++|+|+++|
T Consensus         9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~P   86 (113)
T cd03006           9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYFP   86 (113)
T ss_pred             CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCcccC
Confidence            479999999999872    445789999999999999999999999999987  7999999999999999 589999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      |+++|++|+...+|.|.++.+.|..|+
T Consensus        87 Tl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          87 VIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             EEEEEECCccceEEeCCCCHHHHHhhC
Confidence            999999998888899999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.86  E-value=5e-20  Score=169.09  Aligned_cols=233  Identities=23%  Similarity=0.417  Sum_probs=170.3

Q ss_pred             CceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++.++|.+.+.++ .++|.||++||++|+++.|.|.++++.+.+. .++.|+.|||+.+..+|++++|.++|++++
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI   81 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence            57889999999988555 5799999999999999999999999988653 359999999999999999999999999999


Q ss_pred             EeCCeE-eeeecCCCCHHHHHHHHHhhhCCCCCCCC--------------------CCcccc----------------C-
Q psy14086        160 IESGKK-LDKFQGSRTLETLVNYVSKMKGPLNKKAD--------------------SPDAEN----------------A-  201 (324)
Q Consensus       160 ~~~g~~-~~~~~g~~~~~~i~~fi~~~~~~~~~~~~--------------------~~~~~~----------------~-  201 (324)
                      |++|+. ...|.|.++.++|.+|+.+.+........                    ......                . 
T Consensus        82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~  161 (462)
T TIGR01130        82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF  161 (462)
T ss_pred             EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence            999887 67899999999999999988764311100                    000000                0 


Q ss_pred             --------------CC-C-----------------C----------------CCCCCeeEeccccccccccCCcEEEEEe
Q psy14086        202 --------------SE-V-----------------P----------------VKPEPVVSLTSENFNDVIKSGTVFIKFF  233 (324)
Q Consensus       202 --------------~~-~-----------------~----------------~~~~~v~~l~~~~~~~~~~~~~~~v~f~  233 (324)
                                    .. .                 .                ..-+.+..++..++......++.++.|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~  241 (462)
T TIGR01130       162 FAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYY  241 (462)
T ss_pred             EEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEE
Confidence                          00 0                 0                0012233333344444444445444443


Q ss_pred             --CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecCe-eeeeecC-CCCHH
Q psy14086        234 --APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNGV-RTAEYNG-SRDLE  307 (324)
Q Consensus       234 --~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g~-~~~~~~g-~~~~~  307 (324)
                        ......|..+...++++|.+ +.+ ..+.|+.+|+..  ...++..+++.  .+|+++++.... ....+.+ ..+.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~a~~-~~~-~~i~f~~~d~~~--~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~  317 (462)
T TIGR01130       242 NVDESLDPFEELRNRFLEAAKK-FRG-KFVNFAVADEED--FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSE  317 (462)
T ss_pred             EecCCchHHHHHHHHHHHHHHH-CCC-CeEEEEEecHHH--hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHH
Confidence              34445578899999999966 432 368999999988  78899999998  699999996432 3334555 68999


Q ss_pred             HHHHHHHhhcc
Q psy14086        308 ELYQFILKHKV  318 (324)
Q Consensus       308 ~l~~fi~~~~~  318 (324)
                      .|.+||++.++
T Consensus       318 ~i~~fi~~~~~  328 (462)
T TIGR01130       318 NLEAFVKDFLD  328 (462)
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.86  E-value=4.4e-21  Score=139.09  Aligned_cols=103  Identities=18%  Similarity=0.436  Sum_probs=90.4

Q ss_pred             CCCCCeeEeccccccccc----cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh-hhc
Q psy14086        206 VKPEPVVSLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC-NQE  280 (324)
Q Consensus       206 ~~~~~v~~l~~~~~~~~~----~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~-~~~  280 (324)
                      ...+.|..+++++|++.+    .++.++|.||++||++|+.+.|.++++|.+ +..  .+.|+.+|++.  +.+++ +++
T Consensus         6 ~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~-~~~--~v~~~~Vd~d~--~~~l~~~~~   80 (113)
T cd03006           6 SQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQK-LSD--QVLFVAINCWW--PQGKCRKQK   80 (113)
T ss_pred             CCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CeEEEEEECCC--ChHHHHHhc
Confidence            344779999999999862    345799999999999999999999999966 544  59999999998  88888 589


Q ss_pred             CCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        281 GVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       281 ~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      +|.++||+++|++|+....|.|.++.+.|..|+
T Consensus        81 ~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          81 HFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence            999999999999998888899999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0910|consensus

Probab=99.86  E-value=4.3e-21  Score=141.35  Aligned_cols=104  Identities=29%  Similarity=0.574  Sum_probs=97.2

Q ss_pred             CceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++..+|++.+  .+.|++|.|||+||+||+.+.|.+++++.++.+  ++.|+++|.+++..++.+|+|+++|++++
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence            56677889999888  445899999999999999999999999999988  89999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |++|+...++.|..+.+.|.+||++++.
T Consensus       122 fknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999999999999999999998864

>KOG4277|consensus

Probab=99.86  E-value=1.1e-20  Score=152.86  Aligned_cols=197  Identities=21%  Similarity=0.500  Sum_probs=141.6

Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      .+.+| ++.|......+.|+|.||+|||++|+.+.|.|.++...++.- ..+.++++||+..+.++.+|||++||+|.+|
T Consensus        29 ~VeDL-ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~  107 (468)
T KOG4277|consen   29 AVEDL-DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF  107 (468)
T ss_pred             hhhhh-hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEe
Confidence            45555 455666667778999999999999999999999999988763 3699999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc--cccccc-CCcEEEEEeCCCC
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN--FNDVIK-SGTVFIKFFAPWC  237 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~-~~~~~v~f~~~~c  237 (324)
                      +++-.+ .|.|+++.+.|.+|..+...                     ..+..++...  +..+-. ..+.+|+|.+..-
T Consensus       108 kgd~a~-dYRG~R~Kd~iieFAhR~a~---------------------aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~  165 (468)
T KOG4277|consen  108 KGDHAI-DYRGGREKDAIIEFAHRCAA---------------------AIIEPINENQIEFEHLQARHQPFFVFFGTGEG  165 (468)
T ss_pred             cCCeee-ecCCCccHHHHHHHHHhccc---------------------ceeeecChhHHHHHHHhhccCceEEEEeCCCC
Confidence            877554 59999999999999998876                     3344555433  333322 2477887775432


Q ss_pred             hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       238 ~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +    +...+.++|..      .+.++..-..+  ..-....-..+..|++.+|++..-....+|  +.++|.+||++
T Consensus       166 P----L~d~fidAASe------~~~~a~FfSas--eeVaPe~~~~kempaV~VFKDetf~i~de~--dd~dLseWinR  229 (468)
T KOG4277|consen  166 P----LFDAFIDAASE------KFSVARFFSAS--EEVAPEENDAKEMPAVAVFKDETFEIEDEG--DDEDLSEWINR  229 (468)
T ss_pred             c----HHHHHHHHhhh------heeeeeeeccc--cccCCcccchhhccceEEEccceeEEEecC--chhHHHHHHhH
Confidence            2    44444555533      35555544332  122223445667999999998744433444  47889999975

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.85  E-value=9.8e-21  Score=136.32  Aligned_cols=99  Identities=35%  Similarity=0.766  Sum_probs=91.4

Q ss_pred             CceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         82 GLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      .+..++.++|++.+.+ ++++|.||++||++|+.+.|.|+++++.+++  .+.|+.+||++++.++++++|+++|++++|
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   79 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYVF   79 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence            5778999999998855 4689999999999999999999999999987  799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHH
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      ++|+...+|.|.++.+.|.+|.
T Consensus        80 ~~g~~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          80 PSGMNPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             cCCCCcccCCCCCCHHHHHhhC
Confidence            9998888899999999998873

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.85  E-value=4.6e-20  Score=151.00  Aligned_cols=157  Identities=15%  Similarity=0.264  Sum_probs=126.5

Q ss_pred             eEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChh
Q psy14086         10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEE   89 (324)
Q Consensus        10 i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (324)
                      +.++.+|.+++++++++|+|.++||+.+|++|. ....+|.|..+.+.+.+|+...++-..           .-..++++
T Consensus        56 i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~G~~~~~~l~~~i~~~~~~~~-----------~~~~L~~~  123 (215)
T TIGR02187        56 LEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYTGIPAGYEFAALIEDIVRVSQ-----------GEPGLSEK  123 (215)
T ss_pred             EEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEeecCCHHHHHHHHHHHHHhcC-----------CCCCCCHH
Confidence            556777777999999999999999999999665 323579999999999999988764200           12355555


Q ss_pred             hHHHHh-cCCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEee
Q psy14086         90 SFEKYV-SLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD  167 (324)
Q Consensus        90 ~f~~~~-~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~  167 (324)
                      ..+.+. .+++ .++.||++||++|+.+.+.+++++....   ++.+..+|.+.++.++++|+|.++|+++++++|..  
T Consensus       124 ~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~--  198 (215)
T TIGR02187       124 TVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE--  198 (215)
T ss_pred             HHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE--
Confidence            554443 2334 4677999999999999999999998843   69999999999999999999999999999877753  


Q ss_pred             eecCCCCHHHHHHHHHh
Q psy14086        168 KFQGSRTLETLVNYVSK  184 (324)
Q Consensus       168 ~~~g~~~~~~i~~fi~~  184 (324)
                       +.|..+.++|.+|+.+
T Consensus       199 -~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       199 -FVGAYPEEQFLEYILS  214 (215)
T ss_pred             -EECCCCHHHHHHHHHh
Confidence             8899999999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0910|consensus

Probab=99.84  E-value=1.3e-20  Score=138.72  Aligned_cols=105  Identities=28%  Similarity=0.515  Sum_probs=93.2

Q ss_pred             CCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..+..++..+|++.+-  +.||+|.|||+||++|+.+.|.+++++.+ +.+  .+.++++|+++  +.+++.+|+|+.+|
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~-~~g--~~k~~kvdtD~--~~ela~~Y~I~avP  117 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSE-YAG--KFKLYKVDTDE--HPELAEDYEISAVP  117 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHh-hcC--eEEEEEEcccc--ccchHhhcceeeee
Confidence            3456667777887663  35899999999999999999999999977 454  79999999999  99999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+++|++|++...+.|..+.+.+.+||++.++
T Consensus       118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            99999999999899999999999999999864

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.84  E-value=3e-20  Score=134.58  Aligned_cols=99  Identities=31%  Similarity=0.717  Sum_probs=90.5

Q ss_pred             CceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+.+++.++|++.+.  +++++|.||++||++|+.+.|.|+++++++.+  .+.|+.+||++++.++++++|+++|++++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            577899999999873  34789999999999999999999999999976  79999999999999999999999999999


Q ss_pred             EeCC-eEeeeecCCCC-HHHHHHHH
Q psy14086        160 IESG-KKLDKFQGSRT-LETLVNYV  182 (324)
Q Consensus       160 ~~~g-~~~~~~~g~~~-~~~i~~fi  182 (324)
                      |++| +...+|.|..+ .++|.+||
T Consensus        80 ~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCCceEccCCCCCHHHHHhhC
Confidence            9997 88889999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.84  E-value=7.5e-20  Score=132.36  Aligned_cols=101  Identities=35%  Similarity=0.892  Sum_probs=94.9

Q ss_pred             ceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      |..+|.++|++.+.+  ++++|+||++||++|+.+.|.|.++++.+.+  ++.|+.+|+++++.++++|+|+++|+++++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            467899999999954  6789999999999999999999999999987  899999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++|+...+|.|..+.+.|.+||+++
T Consensus        79 ~~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             ECCcEEEEEECCCCHHHHHHHHHcC
Confidence            9999999999999999999999864

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.83  E-value=8.9e-20  Score=133.05  Aligned_cols=104  Identities=10%  Similarity=0.266  Sum_probs=93.1

Q ss_pred             CCCceEcChhhHHHHhcCC--CEEEEEeCCCCHh--Hh--hHHHHHHHHHHhc--CCCCCeEEEEeccccchhhhhhCCc
Q psy14086         80 NEGLVELTEESFEKYVSLG--NHFVKFYAPWCGH--CQ--SLAPVWQELASHF--KTEEDVSIAKIDCTQHRSICQSFDI  151 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~~--~~~v~f~~~~c~~--c~--~~~~~~~~la~~~--~~~~~i~~~~vd~~~~~~~~~~~~i  151 (324)
                      ...+..+|+++|++.+.+.  ++++.||++||++  |+  .+.|.+.++|.++  .+  ++.|++||+++++.++++|||
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I   85 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGL   85 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCC
Confidence            4578999999999988444  5688888899977  99  8889999999998  55  799999999999999999999


Q ss_pred             cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++||+++|++|+.+. |.|.++.+.|.+||.+.+
T Consensus        86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            9999999999999776 999999999999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.83  E-value=7.4e-20  Score=133.38  Aligned_cols=101  Identities=32%  Similarity=0.650  Sum_probs=89.8

Q ss_pred             CceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC----CCeEEEEeccccchhhhhhCCccccce
Q psy14086         82 GLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE----EDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~----~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ++.+++.++|++.+..+ +++|.||++||++|+++.|.|+++++.+++.    .++.|+.+||+.+..++++|+|+++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt   81 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT   81 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence            57889999999988554 5799999999999999999999999987432    259999999999999999999999999


Q ss_pred             EEEEeCCe-EeeeecCCCCHHHHHHHH
Q psy14086        157 LLWIESGK-KLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       157 ~~~~~~g~-~~~~~~g~~~~~~i~~fi  182 (324)
                      +++|++|+ ....|.|.++.++|.+||
T Consensus        82 l~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          82 LKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            99999987 457899999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8.5e-20  Score=148.94  Aligned_cols=106  Identities=31%  Similarity=0.678  Sum_probs=99.6

Q ss_pred             CCceEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         81 EGLVELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ..+.++|+.||+..+    ...|++|+||+|||++|+++.|.+++++..++|  ++.+++|||+.++.++..|||+++|+
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence            359999999999877    234899999999999999999999999999999  99999999999999999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ++.|.+|+.+.-|.|....+.|.+|+.++++.
T Consensus       101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            99999999999999999999999999999874

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.82  E-value=1.9e-19  Score=129.67  Aligned_cols=100  Identities=31%  Similarity=0.679  Sum_probs=89.9

Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      .+.+++.++|++.+++ .++|.||++||++|+.+.|.|++++..++. .++.|+.+|++.++.++++|+|+++|++++++
T Consensus         2 ~v~~l~~~~f~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   79 (101)
T cd02994           2 NVVELTDSNWTLVLEG-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYHAK   79 (101)
T ss_pred             ceEEcChhhHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence            5788999999988754 589999999999999999999999998753 26999999999999999999999999999998


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHh
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      +|+. .+|.|..+.++|.+||++
T Consensus        80 ~g~~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          80 DGVF-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CCCE-EEecCCCCHHHHHHHHhC
Confidence            8874 689999999999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.82  E-value=2.1e-19  Score=130.03  Aligned_cols=101  Identities=43%  Similarity=0.859  Sum_probs=92.7

Q ss_pred             eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      |..+++++|++.+.+  ++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  ++.++++++|+++|++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~Pt~   75 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKE-YKD--NVKFAKVDCDE--NKELCKKYGVKSVPTI   75 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTT--SHHHHHHTTCSSSSEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccc-ccc--ccccchhhhhc--cchhhhccCCCCCCEE
Confidence            567899999998865  5899999999999999999999999955 554  79999999998  8999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ++|++|+....|.|.++.+.|.+||+++
T Consensus        76 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   76 IFFKNGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             EEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence            9999999988999999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.82  E-value=9.2e-20  Score=131.23  Aligned_cols=98  Identities=37%  Similarity=0.871  Sum_probs=88.4

Q ss_pred             CeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        210 PVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      .+..++.++|++.+.+ ++++|.||++||++|+.+.|.|+++|.+ +..  .+.|+.+|++.  ++.++++++|+++||+
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~Pt~   76 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKE-MDG--VIRIGAVNCGD--DRMLCRSQGVNSYPSL   76 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHH-hcC--ceEEEEEeCCc--cHHHHHHcCCCccCEE
Confidence            4778899999988855 5799999999999999999999999965 544  58999999999  8999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHH
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQF  312 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~f  312 (324)
                      ++|++|+.+..|.|.++.+.|.+|
T Consensus        77 ~~~~~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          77 YVFPSGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             EEEcCCCCcccCCCCCCHHHHHhh
Confidence            999999888889999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.82  E-value=2.1e-19  Score=129.75  Aligned_cols=100  Identities=52%  Similarity=1.154  Sum_probs=92.3

Q ss_pred             ceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC-CCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      +..++.++|++.+.+++++|.||++||++|+.+.|.|+++++++++ ...+.|+.+||+.+..++++|+|.++|++++|+
T Consensus         2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   81 (102)
T cd03005           2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK   81 (102)
T ss_pred             eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence            5688999999999888899999999999999999999999999976 346999999999999999999999999999999


Q ss_pred             CCeEeeeecCCCCHHHHHHHH
Q psy14086        162 SGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      +|+...+|.|..+.++|.+||
T Consensus        82 ~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          82 DGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             CCCeeeEeeCCCCHHHHHhhC
Confidence            998888899999999999885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00062 glutaredoxin; Provisional

Probab=99.82  E-value=7.2e-19  Score=140.01  Aligned_cols=165  Identities=15%  Similarity=0.272  Sum_probs=124.2

Q ss_pred             cChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         86 LTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        86 l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      .+.+.|.+.+.  .+..+++|+++||++|+.+.+.+.++++++..   +.|+.||++        |+|.++|++++|++|
T Consensus         4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d--------~~V~~vPtfv~~~~g   72 (204)
T PTZ00062          4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA--------DANNEYGVFEFYQNS   72 (204)
T ss_pred             CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc--------cCcccceEEEEEECC
Confidence            35677888876  56789999999999999999999999999964   999999976        999999999999999


Q ss_pred             eEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEEEeC----CCChh
Q psy14086        164 KKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFA----PWCGH  239 (324)
Q Consensus       164 ~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~f~~----~~c~~  239 (324)
                      +.+.++.|. ++..|..++.......                   + . .-..+.+.+.+.+++++|+--.    |+|+.
T Consensus        73 ~~i~r~~G~-~~~~~~~~~~~~~~~~-------------------~-~-~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~  130 (204)
T PTZ00062         73 QLINSLEGC-NTSTLVSFIRGWAQKG-------------------S-S-EDTVEKIERLIRNHKILLFMKGSKTFPFCRF  130 (204)
T ss_pred             EEEeeeeCC-CHHHHHHHHHHHcCCC-------------------C-H-HHHHHHHHHHHhcCCEEEEEccCCCCCCChh
Confidence            999999987 5899999998887621                   0 0 0122335666667777766553    78999


Q ss_pred             hhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh----hcCCCccceEEEEecCee
Q psy14086        240 CKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYVYKNGVR  296 (324)
Q Consensus       240 C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~----~~~i~~~P~l~~~~~g~~  296 (324)
                      |+.+...|++.         ++.|..+|...  ++++.+    ..+...+|.+  |-+|+-
T Consensus       131 C~~~k~~L~~~---------~i~y~~~DI~~--d~~~~~~l~~~sg~~TvPqV--fI~G~~  178 (204)
T PTZ00062        131 SNAVVNMLNSS---------GVKYETYNIFE--DPDLREELKVYSNWPTYPQL--YVNGEL  178 (204)
T ss_pred             HHHHHHHHHHc---------CCCEEEEEcCC--CHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence            99988777654         35566778776  444433    3345567777  445543

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.81  E-value=1.8e-19  Score=131.28  Aligned_cols=102  Identities=33%  Similarity=0.743  Sum_probs=88.5

Q ss_pred             CeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC---CCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        210 PVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN---KHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~---~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      .|..+++++|++.+.. ++++|.||++||++|+.+.|.|++++..+...   ...+.|+.+|++.  +++++++|+|+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~   79 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKY   79 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcC
Confidence            4788899999998855 47999999999999999999999999654221   1258999999999  8999999999999


Q ss_pred             ceEEEEecCe-eeeeecCCCCHHHHHHHH
Q psy14086        286 PSIYVYKNGV-RTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       286 P~l~~~~~g~-~~~~~~g~~~~~~l~~fi  313 (324)
                      |++++|++|+ ....|.|.++.+.|.+||
T Consensus        80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          80 PTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999999998 457899999999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.81  E-value=2.9e-19  Score=130.35  Aligned_cols=105  Identities=24%  Similarity=0.390  Sum_probs=92.4

Q ss_pred             CCeeEeccccccccccCC--cEEEEEeCCCChh--hh--hhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSLTSENFNDVIKSG--TVFIKFFAPWCGH--CK--RLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~--~~~v~f~~~~c~~--C~--~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      ..|..+++++|++.+.+.  +++++|+++||++  |+  .+.|.+.++|.++++. .++.|+++|++.  +++++++|+|
T Consensus         9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~--~~~La~~~~I   85 (120)
T cd03065           9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKK--DAKVAKKLGL   85 (120)
T ss_pred             cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCC--CHHHHHHcCC
Confidence            579999999999988553  6889999999987  99  7899999999775433 269999999999  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      .++||+++|++|+.+. |.|.++.+.|.+||.+.+
T Consensus        86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            9999999999999876 999999999999998754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.80  E-value=3.9e-19  Score=128.05  Aligned_cols=100  Identities=43%  Similarity=0.752  Sum_probs=87.7

Q ss_pred             CeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        210 PVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      .|..++.++|++.+.+ .++|.||++||++|+.+.|.|++++.. +. ..++.++.+|++.  ++.++++++|+++||++
T Consensus         2 ~v~~l~~~~f~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~l~~~-~~-~~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           2 NVVELTDSNWTLVLEG-EWMIEFYAPWCPACQQLQPEWEEFADW-SD-DLGINVAKVDVTQ--EPGLSGRFFVTALPTIY   76 (101)
T ss_pred             ceEEcChhhHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHh-hc-cCCeEEEEEEccC--CHhHHHHcCCcccCEEE
Confidence            4788999999998854 489999999999999999999999954 33 2369999999998  89999999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +|++|+. ..|.|.++.++|.+||.+
T Consensus        77 ~~~~g~~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          77 HAKDGVF-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EeCCCCE-EEecCCCCHHHHHHHHhC
Confidence            9999874 679999999999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.80  E-value=6.3e-17  Score=134.02  Aligned_cols=264  Identities=16%  Similarity=0.220  Sum_probs=181.4

Q ss_pred             CCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceE
Q psy14086          6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVE   85 (324)
Q Consensus         6 ~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (324)
                      ++..|.||.||..++.+|++|+|+...++|.+|+++.   .++|+|.++++.++.|+.+....             +|..
T Consensus        87 E~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~---~IEydG~~saDtLVeFl~dl~ed-------------PVei  150 (383)
T PF01216_consen   87 EDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGE---VIEYDGERSADTLVEFLLDLLED-------------PVEI  150 (383)
T ss_dssp             GGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTE---EEEE-S--SHHHHHHHHHHHHSS-------------SEEE
T ss_pred             cccCcceEEeccHHHHHHHHhcCccccCcEEEEECCc---EEEecCccCHHHHHHHHHHhccc-------------chhh
Confidence            5678999999999999999999999999999999766   89999999999999999999975             6777


Q ss_pred             cChhh-H--HHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086         86 LTEES-F--EKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        86 l~~~~-f--~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  162 (324)
                      ++.+. +  ...++..+.+|.|+.+.-+.   ....|.++|..|+.  -|.|.   ++-++.+++++++. .-.+-+|.+
T Consensus       151 In~~~e~~~Fe~ied~~klIGyFk~~~s~---~yk~FeeAAe~F~p--~IkFf---Atfd~~vAk~L~lK-~nev~fyep  221 (383)
T PF01216_consen  151 INNKHELKAFERIEDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP--YIKFF---ATFDKKVAKKLGLK-LNEVDFYEP  221 (383)
T ss_dssp             E-SHHHHHHHHH--SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT--TSEEE---EE-SHHHHHHHT-S-TT-EEEE-T
T ss_pred             hcChhhhhhhhhcccceeEEEEeCCCCcH---HHHHHHHHHHhhcC--ceeEE---EEecchhhhhcCcc-ccceeeecc
Confidence            76543 2  22234456677777664332   35689999999988  78888   45678999999997 777888887


Q ss_pred             --CeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC---CcEEEEEeCCCC
Q psy14086        163 --GKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS---GTVFIKFFAPWC  237 (324)
Q Consensus       163 --g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c  237 (324)
                        .+++.....+.+.++|++||+++..                     +.++.++..++.+...+   +..+|.|.....
T Consensus       222 F~~~pi~ip~~p~~e~e~~~fi~~h~r---------------------ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~d  280 (383)
T PF01216_consen  222 FMDEPITIPGKPYTEEELVEFIEEHKR---------------------PTLRKLRPEDMFETWEDDIDGIHIVAFAEEED  280 (383)
T ss_dssp             TSSSEEEESSSS--HHHHHHHHHHT-S----------------------SEEE--GGGHHHHHHSSSSSEEEEEE--TTS
T ss_pred             ccCCCccCCCCCCCHHHHHHHHHHhch---------------------hHhhhCChhhhhhhhcccCCCceEEEEecCCC
Confidence              4555544456899999999999876                     67999999997666644   468888988888


Q ss_pred             hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCC-ccceEEEEec--Ceeee-eecCC---CCH
Q psy14086        238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVD-GFPSIYVYKN--GVRTA-EYNGS---RDL  306 (324)
Q Consensus       238 ~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~-~~P~l~~~~~--g~~~~-~~~g~---~~~  306 (324)
                      +...++..++.++|++ ...++.+.+++||-+.  .+    -+.+.|+|. .-|.|-+..-  ..-+. ...+.   -+.
T Consensus       281 pdG~efleilk~va~~-nt~np~LsivwIDPD~--fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~  357 (383)
T PF01216_consen  281 PDGFEFLEILKQVARD-NTDNPDLSIVWIDPDD--FPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTA  357 (383)
T ss_dssp             HHHHHHHHHHHHHHHH-CTT-TT--EEEE-GGG---HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC-STTTSS---H
T ss_pred             CchHHHHHHHHHHHHh-cCcCCceeEEEECCCC--CchhHHHHHhhcCccccCCceeEEeccccccchhccCCcccCCcH
Confidence            9999999999999966 4555689999999776  54    334668876 4599988852  22222 22221   378


Q ss_pred             HHHHHHHHhhcc
Q psy14086        307 EELYQFILKHKV  318 (324)
Q Consensus       307 ~~l~~fi~~~~~  318 (324)
                      +.|.+||.+.+.
T Consensus       358 ~~LedWieDVls  369 (383)
T PF01216_consen  358 EELEDWIEDVLS  369 (383)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=2.8e-19  Score=129.48  Aligned_cols=99  Identities=29%  Similarity=0.746  Sum_probs=87.7

Q ss_pred             CeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      .+..++.++|++.+.+  ++++|.||++||++|+.+.|.|++++.+ +..  .+.|+.+|++.  +++++++++|.++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~i~~~Pt   76 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARA-LKG--KVKVGSVDCQK--YESLCQQANIRAYPT   76 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CcEEEEEECCc--hHHHHHHcCCCcccE
Confidence            4778899999988743  4799999999999999999999999966 443  69999999999  899999999999999


Q ss_pred             EEEEecC-eeeeeecCCCC-HHHHHHHH
Q psy14086        288 IYVYKNG-VRTAEYNGSRD-LEELYQFI  313 (324)
Q Consensus       288 l~~~~~g-~~~~~~~g~~~-~~~l~~fi  313 (324)
                      +++|++| +.+..|.|..+ .++|.+||
T Consensus        77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          77 IRLYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence            9999987 77888999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=140.60  Aligned_cols=108  Identities=39%  Similarity=0.737  Sum_probs=98.1

Q ss_pred             CCCceEcChhhHHHHhc------CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc
Q psy14086         80 NEGLVELTEESFEKYVS------LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS  153 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~------~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~  153 (324)
                      ...+.++++++|++.+.      .++++|.||++||++|+.+.|.|+++++.+++  .+.|+.+|+++++.++++|+|++
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence            45789999999999874      35799999999999999999999999999987  79999999999999999999999


Q ss_pred             cceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        154 YPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       154 ~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +|++++|++|+....+.|.++.++|.+|+.+.....
T Consensus       107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443        107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence            999999999987776678899999999999987643

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.80  E-value=5.6e-19  Score=127.53  Aligned_cols=101  Identities=50%  Similarity=1.069  Sum_probs=90.0

Q ss_pred             eeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086        211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV  290 (324)
Q Consensus       211 v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~  290 (324)
                      +..+++++|++.+.+++++|.||++||++|+.+.|.+++++.++......+.++.+|++.  +..+++.++|.++|++++
T Consensus         2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhHhhcCCCcCCEEEE
Confidence            567889999999887789999999999999999999999997643323469999999998  889999999999999999


Q ss_pred             EecCeeeeeecCCCCHHHHHHHH
Q psy14086        291 YKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       291 ~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      |++|+.+..|.|.++.+.|.+||
T Consensus        80 ~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCCeeeEeeCCCCHHHHHhhC
Confidence            99998888899999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.79  E-value=1e-18  Score=127.61  Aligned_cols=100  Identities=24%  Similarity=0.451  Sum_probs=88.9

Q ss_pred             eEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         84 VELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        84 ~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ..++.++|.+.+    .+++++|.||++||++|+.+.|.|.++++.+++. ++.|+.||++.++.++++++|+++|++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i   85 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVG   85 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEE
Confidence            346778887654    3468999999999999999999999999999752 59999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      |++|+...++.|..+.+.|.+||++
T Consensus        86 ~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          86 IINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             EECCEEEEEecCCCCHHHHHHHHhc
Confidence            9999888888999999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.79  E-value=1.3e-18  Score=127.28  Aligned_cols=98  Identities=33%  Similarity=0.796  Sum_probs=88.5

Q ss_pred             ceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEE
Q psy14086         83 LVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLL  158 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~  158 (324)
                      +.+++.++|++.+.+  .+++|.||++||++|+.+.|.|+++++.+.+  .+.|+.+|++.  +..++++|+|+++|+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            578999999998733  3589999999999999999999999999987  79999999998  88999999999999999


Q ss_pred             EEeCCe-----EeeeecCCCCHHHHHHHH
Q psy14086        159 WIESGK-----KLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       159 ~~~~g~-----~~~~~~g~~~~~~i~~fi  182 (324)
                      +|++|+     ....|.|.++.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            999885     456799999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.79  E-value=3.6e-18  Score=124.75  Aligned_cols=104  Identities=27%  Similarity=0.604  Sum_probs=94.9

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +.+.+++.++|.+.+  .+++++|.||++||++|+.+.|.|+++++.+.+  ++.|+.+|++....++++|+++++|+++
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   80 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence            468889999998765  355789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +|++|+...++.|..+.+.|.+||...+
T Consensus        81 ~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         81 LFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            9999998888999999999999998765

>PHA02278 thioredoxin-like protein

Probab=99.78  E-value=3.5e-18  Score=121.91  Aligned_cols=92  Identities=18%  Similarity=0.267  Sum_probs=81.0

Q ss_pred             hhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCccccceEEEEeC
Q psy14086         88 EESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        88 ~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~  162 (324)
                      .++|.+.+. +++++|.|||+||++|+.+.|.+++++.++..  ++.|+.+|++.+    ..++++|+|.++||+++|++
T Consensus         4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            467777764 56889999999999999999999999988655  577899998875    68999999999999999999


Q ss_pred             CeEeeeecCCCCHHHHHHH
Q psy14086        163 GKKLDKFQGSRTLETLVNY  181 (324)
Q Consensus       163 g~~~~~~~g~~~~~~i~~f  181 (324)
                      |+.+.+..|..+.+.|.++
T Consensus        82 G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEEEEEeCCCCHHHHHhh
Confidence            9999999999999888876

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.78  E-value=4.5e-18  Score=123.00  Aligned_cols=98  Identities=37%  Similarity=0.776  Sum_probs=88.9

Q ss_pred             ceEcChhhHHHHhcC-C-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYVSL-G-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~-~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +.+++.++|.+.+.+ + +++|+||++||++|+.+.|.|.++++.+++  .+.|+.+|++.+..++++|+|+++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            578899999988733 3 489999999999999999999999999987  799999999999999999999999999999


Q ss_pred             eCC-eEeeeecCCCCHHHHHHHH
Q psy14086        161 ESG-KKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       161 ~~g-~~~~~~~g~~~~~~i~~fi  182 (324)
                      ++| .....|.|..+.++|.+|+
T Consensus        80 ~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCcceeecCCCCCHHHHHHHh
Confidence            988 5566799999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.77  E-value=2.6e-18  Score=125.47  Aligned_cols=99  Identities=27%  Similarity=0.441  Sum_probs=84.7

Q ss_pred             Eeccccccccc----cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        213 SLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       213 ~l~~~~~~~~~----~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      .++.++|++.+    .+++++|.||++||++|+.+.|.|+++++++...  ++.++.+|++.  ++.++.+++|.++||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~--~~~l~~~~~V~~~Pt~   83 (111)
T cd02963           8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGH--ERRLARKLGAHSVPAI   83 (111)
T ss_pred             eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccc--cHHHHHHcCCccCCEE
Confidence            34666676533    3468999999999999999999999999664322  58999999998  8899999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      ++|++|+.+..+.|..+.+.|.+||.+
T Consensus        84 ~i~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          84 VGIINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             EEEECCEEEEEecCCCCHHHHHHHHhc
Confidence            999999888788999999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.7e-18  Score=141.42  Aligned_cols=106  Identities=31%  Similarity=0.643  Sum_probs=96.8

Q ss_pred             CCeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      ..++++|+.+|...+.    ..||+|+||+|||++|+.+.|.++.++.. +.+  ++.+++|||+.  .+.+...|||++
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~-~~G--~f~LakvN~D~--~p~vAaqfgiqs   97 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAE-YKG--KFKLAKVNCDA--EPMVAAQFGVQS   97 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHH-hCC--ceEEEEecCCc--chhHHHHhCcCc
Confidence            4499999999998763    24899999999999999999999999966 555  79999999999  999999999999


Q ss_pred             cceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +|++++|++|+.+.-|.|....+.|.+||.++++.
T Consensus        98 IPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          98 IPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             CCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            99999999999999999999999999999998774

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.77  E-value=2.5e-18  Score=123.29  Aligned_cols=85  Identities=13%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             hhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         88 EESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        88 ~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      .++|++.+.   +++++|.||++||++|+.+.|.+.+++.++.+  .+.|++||+++++.++++|+|+++||+++|++|+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            456777774   45789999999999999999999999999987  7899999999999999999999999999999999


Q ss_pred             EeeeecCCCC
Q psy14086        165 KLDKFQGSRT  174 (324)
Q Consensus       165 ~~~~~~g~~~  174 (324)
                      .+.+..|..+
T Consensus        80 ~v~~~~G~~~   89 (114)
T cd02954          80 HMKIDLGTGN   89 (114)
T ss_pred             EEEEEcCCCC
Confidence            8887777543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.77  E-value=4.8e-18  Score=121.13  Aligned_cols=92  Identities=26%  Similarity=0.542  Sum_probs=83.4

Q ss_pred             hHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEe
Q psy14086         90 SFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKL  166 (324)
Q Consensus        90 ~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~  166 (324)
                      +|++.+.   +++++|.||++||++|+.+.|.+.+++..+.+  .+.++.+|++.+..++++|+|.++|++++|++|+..
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence            4665552   34789999999999999999999999999987  799999999999999999999999999999999888


Q ss_pred             eeecCCCCHHHHHHHHH
Q psy14086        167 DKFQGSRTLETLVNYVS  183 (324)
Q Consensus       167 ~~~~g~~~~~~i~~fi~  183 (324)
                      .++.|..+.+.|.+||.
T Consensus        80 ~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          80 DGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             eeecCCCCHHHHHHHhC
Confidence            88999999999999873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.77  E-value=5.7e-18  Score=122.22  Aligned_cols=100  Identities=37%  Similarity=0.820  Sum_probs=89.9

Q ss_pred             cChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         86 LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        86 l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      |+.++|++.+.+ ++++|+||++||++|+.+.+.|++++..+++..++.++.+|++++..++++|+|+++|++++|++|+
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~   80 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK   80 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence            567888888754 4679999999999999999999999999987556999999999999999999999999999999987


Q ss_pred             EeeeecCCCCHHHHHHHHHhh
Q psy14086        165 KLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ....|.|..+.++|..||++.
T Consensus        81 ~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        81 KPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             cceeecCCCCHHHHHHHHHhc
Confidence            677899999999999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.77  E-value=3.5e-18  Score=122.09  Aligned_cols=83  Identities=27%  Similarity=0.534  Sum_probs=76.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      .+++++|.||++||++|+.+.|.|+++++.+++   +.++.+|++ .++.++++|+|+++||+++|++| ...+|.|.++
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~   92 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT   92 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence            455789999999999999999999999999964   889999998 78999999999999999999999 7788999999


Q ss_pred             HHHHHHHH
Q psy14086        175 LETLVNYV  182 (324)
Q Consensus       175 ~~~i~~fi  182 (324)
                      .++|.+||
T Consensus        93 ~~~l~~f~  100 (100)
T cd02999          93 LDSLAAFY  100 (100)
T ss_pred             HHHHHhhC
Confidence            99999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.76  E-value=9.5e-18  Score=121.52  Aligned_cols=100  Identities=35%  Similarity=0.861  Sum_probs=89.8

Q ss_pred             ceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEE
Q psy14086         83 LVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~  159 (324)
                      +..++..+|+..+.+ ++++|.||++||++|+++.|.++++++.+.....+.++.+|++.  +..++++++|+++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~   81 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY   81 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence            567888999888844 47899999999999999999999999999743479999999998  899999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHH
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      +++|+...+|.|..+.+++.+||
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          82 FENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EeCCCeeEEeCCCCCHHHHHhhC
Confidence            99998888899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK10996 thioredoxin 2; Provisional

Probab=99.76  E-value=2.4e-17  Score=125.13  Aligned_cols=103  Identities=23%  Similarity=0.584  Sum_probs=94.4

Q ss_pred             CCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         81 EGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ..+.+++.++|++.+.+ ++++|.||++||++|+.+.+.|.++++++.+  ++.|+.+|++.++.++++|+|+++|++++
T Consensus        35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptlii  112 (139)
T PRK10996         35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIMI  112 (139)
T ss_pred             CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence            34677899999998854 4689999999999999999999999999887  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      |++|+.+.++.|..+.+.|.+|+.+.
T Consensus       113 ~~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        113 FKNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            99999998999999999999999875

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.76  E-value=1.6e-17  Score=118.23  Aligned_cols=96  Identities=17%  Similarity=0.323  Sum_probs=88.2

Q ss_pred             CceEcChhhHHHHhcC-CCEEEEEeCCC--CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         82 GLVELTEESFEKYVSL-GNHFVKFYAPW--CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +...++..+|++.+.. +..++.||++|  |++|+.+.|.|.++++++.+  .+.|+.+|++.++.++.+|+|+++||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            5678999999988844 67899999997  99999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHH
Q psy14086        159 WIESGKKLDKFQGSRTLETLV  179 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~  179 (324)
                      +|++|+...+..|..+.+++.
T Consensus        89 ~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEEEEEEeCccCHHHHh
Confidence            999999999999998887765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PHA02278 thioredoxin-like protein

Probab=99.76  E-value=6e-18  Score=120.67  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=77.1

Q ss_pred             cccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCCCccceEEEEec
Q psy14086        217 ENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       217 ~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      ++|.+.+. +++++|.||++||++|+.+.|.+++++.+ +..  .+.|+.+|++...  .++++++|+|.++||+++|++
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~-~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQES-GDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhh-hcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            44666654 46899999999999999999999999855 333  4678999988711  157899999999999999999


Q ss_pred             CeeeeeecCCCCHHHHHHH
Q psy14086        294 GVRTAEYNGSRDLEELYQF  312 (324)
Q Consensus       294 g~~~~~~~g~~~~~~l~~f  312 (324)
                      |+.+....|..+.+.+.++
T Consensus        82 G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEEEEEeCCCCHHHHHhh
Confidence            9999999998888888775

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.75  E-value=1e-17  Score=135.72  Aligned_cols=107  Identities=31%  Similarity=0.724  Sum_probs=94.7

Q ss_pred             CCCeeEecccccccccc------CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC
Q psy14086        208 PEPVVSLTSENFNDVIK------SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG  281 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~------~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~  281 (324)
                      +..+..+++++|++.+.      +++++|.||++||++|+.+.|.|++++++ +..  .+.++.+|++.  +++++++|+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~-~~~--~v~~~~VD~~~--~~~l~~~~~  103 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKA-LKG--QVNVADLDATR--ALNLAKRFA  103 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHH-cCC--CeEEEEecCcc--cHHHHHHcC
Confidence            36799999999999874      35899999999999999999999999966 544  58999999999  899999999


Q ss_pred             CCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        282 VDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       282 i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      |+++||+++|++|+.+..+.|.++.++|.+|+.+....
T Consensus       104 I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~  141 (224)
T PTZ00443        104 IKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK  141 (224)
T ss_pred             CCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence            99999999999998877777889999999999887653

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.75  E-value=8.1e-18  Score=122.96  Aligned_cols=101  Identities=39%  Similarity=0.872  Sum_probs=86.9

Q ss_pred             eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      |..+++++|++.+.+  ++++|.||++||++|+.+.|.+++++++ +..  .+.++.+|++...+.++++.++|+++|++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~-~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~   78 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKE-LDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTL   78 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHH-hcC--CceEEEEecCccccHHHHHHcCCCcCCEE
Confidence            678899999988754  4699999999999999999999999965 444  58899999987556789999999999999


Q ss_pred             EEEecCe-----eeeeecCCCCHHHHHHHHH
Q psy14086        289 YVYKNGV-----RTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       289 ~~~~~g~-----~~~~~~g~~~~~~l~~fi~  314 (324)
                      ++|++|+     ....|.|.++.+.|.+||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence            9998875     3567999999999999983

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.75  E-value=1.1e-17  Score=120.34  Aligned_cols=98  Identities=20%  Similarity=0.372  Sum_probs=83.2

Q ss_pred             CceEcChhhHHHHhcCC-CEEEEEeC--CCCH---hHhhHHHHHHHHHHhcCCCCCeEEEEecc-----ccchhhhhhCC
Q psy14086         82 GLVELTEESFEKYVSLG-NHFVKFYA--PWCG---HCQSLAPVWQELASHFKTEEDVSIAKIDC-----TQHRSICQSFD  150 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~-~~~v~f~~--~~c~---~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----~~~~~~~~~~~  150 (324)
                      .+..|++++|++.+.+. .++|.||+  |||+   +|+.+.|++...+.      .+.++.|||     .++.++|++|+
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~   75 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK   75 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence            47889999999999655 57999999  9999   77777777766553      389999999     56789999999


Q ss_pred             cc--ccceEEEEeCCe--EeeeecCC-CCHHHHHHHHHhh
Q psy14086        151 IK--SYPTLLWIESGK--KLDKFQGS-RTLETLVNYVSKM  185 (324)
Q Consensus       151 i~--~~P~~~~~~~g~--~~~~~~g~-~~~~~i~~fi~~~  185 (324)
                      |+  ++|||.+|++|.  ....|.|. ++.++|++||++.
T Consensus        76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            99  999999999885  44679997 9999999999874

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.75  E-value=5.9e-18  Score=121.81  Aligned_cols=100  Identities=24%  Similarity=0.443  Sum_probs=81.6

Q ss_pred             CeeEeccccccccccCC-cEEEEEeC--CCCh---hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhc
Q psy14086        210 PVVSLTSENFNDVIKSG-TVFIKFFA--PWCG---HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQE  280 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~~-~~~v~f~~--~~c~---~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~  280 (324)
                      .+..|+..+|++++.+. .++|.||+  |||+   +|+.+.|.+...+       ..+.++.||++.   .++.+++++|
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa-------~~v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT-------DDLLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc-------CceEEEEEecccccchhhHHHHHHh
Confidence            37789999999999664 69999999  8888   5655555555544       248999999943   1268899999


Q ss_pred             CCC--ccceEEEEecCe--eeeeecCC-CCHHHHHHHHHhh
Q psy14086        281 GVD--GFPSIYVYKNGV--RTAEYNGS-RDLEELYQFILKH  316 (324)
Q Consensus       281 ~i~--~~P~l~~~~~g~--~~~~~~g~-~~~~~l~~fi~~~  316 (324)
                      +|+  ++|||.+|++|.  ....|.|. ++.+.|.+||+++
T Consensus        75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999  999999999885  45689997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.75  E-value=1.5e-17  Score=120.44  Aligned_cols=99  Identities=37%  Similarity=0.828  Sum_probs=88.1

Q ss_pred             ceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +.+|+.++|++.+.+  ++++|+||++||++|+.+.|.|+++++.+++..++.|+.+|++.+ .++..+++.++|++++|
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF   80 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence            678999999998743  478999999999999999999999999997655799999999987 58889999999999999


Q ss_pred             eCCe--EeeeecCCCCHHHHHHHH
Q psy14086        161 ESGK--KLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       161 ~~g~--~~~~~~g~~~~~~i~~fi  182 (324)
                      ++|+  ...+|.|..+.++|.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            9886  567799999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.74  E-value=2.2e-17  Score=120.30  Aligned_cols=100  Identities=27%  Similarity=0.629  Sum_probs=86.6

Q ss_pred             CceEcChhhHHHHhc----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhh-hCCccccc
Q psy14086         82 GLVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQ-SFDIKSYP  155 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~-~~~i~~~P  155 (324)
                      .+.+++.++|+.++.    +++++|.||++||++|+++.|.|.++++.+++ ..+.++.+|++. ...++. .++++++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            578899999998883    45899999999999999999999999999985 259999999997 577886 59999999


Q ss_pred             eEEEEeCC-eEeeeecCC-CCHHHHHHHH
Q psy14086        156 TLLWIESG-KKLDKFQGS-RTLETLVNYV  182 (324)
Q Consensus       156 ~~~~~~~g-~~~~~~~g~-~~~~~i~~fi  182 (324)
                      ++++|++| .....|.|. ++.++|..||
T Consensus        81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            99999875 456679995 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK09381 trxA thioredoxin; Provisional

Probab=99.74  E-value=3.2e-17  Score=119.69  Aligned_cols=104  Identities=27%  Similarity=0.637  Sum_probs=92.1

Q ss_pred             CCeeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..|+.+++++|.+.+ + +++++|.||++||++|+.+.|.|++++++ +..  ++.++.+|++.  ++.+++++++.++|
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~P   77 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQG--KLTVAKLNIDQ--NPGTAPKYGIRGIP   77 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHH-hCC--CcEEEEEECCC--ChhHHHhCCCCcCC
Confidence            468889999988754 3 45899999999999999999999999965 544  68999999999  88999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++++|++|+.+..+.|..+.+.|..||...+
T Consensus        78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            9999999998888999999999999998775

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.74  E-value=1.1e-17  Score=119.42  Aligned_cols=83  Identities=25%  Similarity=0.558  Sum_probs=74.2

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcCCCccceEEEEecCeeeeeecC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG  302 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g  302 (324)
                      .+++++|.||++||++|+.+.|.|++++++ +.   ++.++.+|.+ .  +++++++|+|.++||+++|++| .+..|.|
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~-~~---~~~~~~vd~~~~--~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G   89 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSM-FP---QIRHLAIEESSI--KPSLLSRYGVVGFPTILLFNST-PRVRYNG   89 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHH-hc---cCceEEEECCCC--CHHHHHhcCCeecCEEEEEcCC-ceeEecC
Confidence            356899999999999999999999999965 43   3788899988 6  7899999999999999999998 7778999


Q ss_pred             CCCHHHHHHHH
Q psy14086        303 SRDLEELYQFI  313 (324)
Q Consensus       303 ~~~~~~l~~fi  313 (324)
                      .++.+.|.+||
T Consensus        90 ~~~~~~l~~f~  100 (100)
T cd02999          90 TRTLDSLAAFY  100 (100)
T ss_pred             CCCHHHHHhhC
Confidence            99999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.74  E-value=2.6e-17  Score=119.01  Aligned_cols=96  Identities=33%  Similarity=0.779  Sum_probs=84.9

Q ss_pred             hhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEEEeCCeEee
Q psy14086         89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD  167 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~  167 (324)
                      ++|++..+++.++|.||++||++|+.+.|.|+++++.++.. ..+.++.+|++.++.++++|+|.++|++++|++|. ..
T Consensus         7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~   85 (104)
T cd03000           7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AY   85 (104)
T ss_pred             hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ce
Confidence            67777767778999999999999999999999999998642 25999999999999999999999999999997764 45


Q ss_pred             eecCCCCHHHHHHHHHhh
Q psy14086        168 KFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       168 ~~~g~~~~~~i~~fi~~~  185 (324)
                      +|.|..+.++|.+|+++.
T Consensus        86 ~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          86 NYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             eecCCCCHHHHHHHHHhh
Confidence            689999999999999874

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.74  E-value=8.9e-18  Score=120.49  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086        217 ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       217 ~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      +.|++.+.   +++++|.||++||++|+.+.|.+++++.+ +.+  .+.|+++|++.  ++++.++|+|.++||+++|++
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~-~~~--~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~   77 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAED-VSN--FAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFR   77 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHH-ccC--ceEEEEEECCC--CHHHHHHcCCCCCCEEEEEEC
Confidence            34555553   45799999999999999999999999966 443  47899999999  999999999999999999999


Q ss_pred             CeeeeeecCC
Q psy14086        294 GVRTAEYNGS  303 (324)
Q Consensus       294 g~~~~~~~g~  303 (324)
                      |+.+....|.
T Consensus        78 G~~v~~~~G~   87 (114)
T cd02954          78 NKHMKIDLGT   87 (114)
T ss_pred             CEEEEEEcCC
Confidence            9988777664

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.73  E-value=2.5e-17  Score=117.38  Aligned_cols=92  Identities=29%  Similarity=0.582  Sum_probs=80.3

Q ss_pred             ccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC
Q psy14086        218 NFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG  294 (324)
Q Consensus       218 ~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g  294 (324)
                      +|++.+.   +++++|.||++||++|+.+.|.+++++.. +..  .+.++.+|++.  ..+++++|+|.++|++++|++|
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~-~~~--~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g   76 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEE-YQG--QFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAG   76 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-hCC--cEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCC
Confidence            3555552   34899999999999999999999999955 544  58999999999  8999999999999999999999


Q ss_pred             eeeeeecCCCCHHHHHHHHH
Q psy14086        295 VRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       295 ~~~~~~~g~~~~~~l~~fi~  314 (324)
                      +.+..+.|..+.+.|.+||+
T Consensus        77 ~~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          77 QPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             EEeeeecCCCCHHHHHHHhC
Confidence            88888999999999999873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.73  E-value=3.1e-17  Score=119.01  Aligned_cols=100  Identities=42%  Similarity=0.887  Sum_probs=88.8

Q ss_pred             ceEcChhhHHHHhcC-C-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhhhCCccccceEEE
Q psy14086         83 LVELTEESFEKYVSL-G-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~-~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~  159 (324)
                      +.+++.++|+..+.. + ++++.||++||++|+++.+.|.++++.++...++.++.+|++. ++.++++|+|+++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            567888999888742 3 6899999999999999999999999999744479999999999 899999999999999999


Q ss_pred             EeCC-eEeeeecCCCCHHHHHHHH
Q psy14086        160 IESG-KKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       160 ~~~g-~~~~~~~g~~~~~~i~~fi  182 (324)
                      |++| .....|.|..+.++|.+||
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            9886 5667799999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.73  E-value=7.9e-17  Score=115.84  Aligned_cols=96  Identities=19%  Similarity=0.460  Sum_probs=83.7

Q ss_pred             cChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         86 LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        86 l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      -+.++|+..+.+ ++++|+||++||++|+.+.|.+++++..+++ ..+.|+.+|++ +..++++|+|+++|++++|++|+
T Consensus         5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~   82 (102)
T cd02948           5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE   82 (102)
T ss_pred             cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence            467888888744 4689999999999999999999999999974 24789999998 77899999999999999999999


Q ss_pred             EeeeecCCCCHHHHHHHHHh
Q psy14086        165 KLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi~~  184 (324)
                      ...+..|. +.+.+.++|.+
T Consensus        83 ~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          83 LVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             EEEEEecC-ChHHHHHHHhh
Confidence            88888885 88899988865

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK10996 thioredoxin 2; Provisional

Probab=99.73  E-value=5.8e-17  Score=123.04  Aligned_cols=105  Identities=24%  Similarity=0.547  Sum_probs=92.9

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ...+..++..+|++.+.+ ++++|.||++||++|+.+.|.+.+++.+ +..  ++.|+.+|++.  +++++++|+|.++|
T Consensus        34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~-~~~--~v~~~~vd~~~--~~~l~~~~~V~~~P  108 (139)
T PRK10996         34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAE-RSG--KVRFVKVNTEA--ERELSARFRIRSIP  108 (139)
T ss_pred             CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-hCC--CeEEEEEeCCC--CHHHHHhcCCCccC
Confidence            456777888889988854 5799999999999999999999999965 444  69999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.+
T Consensus       109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            9999999999888999999999999998753

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.73  E-value=3.7e-17  Score=118.22  Aligned_cols=97  Identities=33%  Similarity=0.787  Sum_probs=82.6

Q ss_pred             ccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee
Q psy14086        217 ENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR  296 (324)
Q Consensus       217 ~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~  296 (324)
                      ++|++..+++.++|.||++||++|+.+.|.|++++.++......+.++.+|++.  .+.++++++|.++|++++|++|. 
T Consensus         7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~l~~~~~-   83 (104)
T cd03000           7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIKLLKGDL-   83 (104)
T ss_pred             hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEEEEcCCC-
Confidence            567776667799999999999999999999999996643222358999999998  88999999999999999997764 


Q ss_pred             eeeecCCCCHHHHHHHHHhh
Q psy14086        297 TAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       297 ~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ...+.|..+.+.|.+|+++.
T Consensus        84 ~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          84 AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ceeecCCCCHHHHHHHHHhh
Confidence            45689999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.73  E-value=8.2e-17  Score=115.92  Aligned_cols=94  Identities=17%  Similarity=0.294  Sum_probs=80.5

Q ss_pred             ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch---hhhhhCCccccceEEEE
Q psy14086         87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR---SICQSFDIKSYPTLLWI  160 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~  160 (324)
                      +.++|++.+.   +++++|.||++||++|+.+.|.++++++.+ .  .+.|+.+|++++.   .++++|+|+++|++++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~   78 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFY   78 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence            4567777773   457899999999999999999999999999 3  6999999998764   79999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      ++|+...++.|. ....|.+.+..
T Consensus        79 ~~G~~v~~~~G~-~~~~l~~~~~~  101 (103)
T cd02985          79 KDGEKIHEEEGI-GPDELIGDVLY  101 (103)
T ss_pred             eCCeEEEEEeCC-CHHHHHHHHHh
Confidence            999998889995 56777776654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.73  E-value=3.1e-17  Score=118.81  Aligned_cols=100  Identities=45%  Similarity=0.896  Sum_probs=86.5

Q ss_pred             CeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      +|..|++++|++.+.+  ++++|.||++||++|+.+.|.|.+++.. +....++.++.+|++.  + +++..+++.++|+
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~~~--~-~~~~~~~~~~~Pt   76 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEK-LKGDDNVVIAKMDATA--N-DVPSEFVVDGFPT   76 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHH-hcCCCCEEEEEEeCcc--h-hhhhhccCCCCCE
Confidence            3788999999988754  5899999999999999999999999955 5544579999999998  4 5778899999999


Q ss_pred             EEEEecCe--eeeeecCCCCHHHHHHHH
Q psy14086        288 IYVYKNGV--RTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       288 l~~~~~g~--~~~~~~g~~~~~~l~~fi  313 (324)
                      +++|++|+  ....|.|..+.+.|.+||
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            99999887  566799999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.73  E-value=4e-17  Score=118.20  Aligned_cols=102  Identities=37%  Similarity=0.782  Sum_probs=87.9

Q ss_pred             eeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       211 v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      |..+++.+|++.+++ ++++|.||++||++|+.+.|.+++++.. +.....+.++.+|++...+..++++++|.++|+++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATE-LKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHH-HhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            667888888887755 4799999999999999999999999955 44333688999999875568899999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHH
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      +|++|+.+..|.|..+.+.+.+||
T Consensus        81 ~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCeeEEeCCCCCHHHHHhhC
Confidence            999998888899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.72  E-value=3.9e-17  Score=118.09  Aligned_cols=98  Identities=36%  Similarity=0.758  Sum_probs=86.0

Q ss_pred             eeEeccccccccccC-C-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVIKS-G-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~~~-~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      |..+++++|.+.+.+ + +++|.||++||++|+.+.|.|.+++++ +..  .+.++.+|++.  ++++++.++|+++|++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~id~~~--~~~~~~~~~i~~~P~~   76 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKA-LKG--IVKVGAVDADV--HQSLAQQYGVRGFPTI   76 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHH-hcC--CceEEEEECcc--hHHHHHHCCCCccCEE
Confidence            677888999887743 3 599999999999999999999999966 444  69999999998  8999999999999999


Q ss_pred             EEEecC-eeeeeecCCCCHHHHHHHH
Q psy14086        289 YVYKNG-VRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       289 ~~~~~g-~~~~~~~g~~~~~~l~~fi  313 (324)
                      ++|++| .....|.|.++.++|.+|+
T Consensus        77 ~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          77 KVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             EEECCCCcceeecCCCCCHHHHHHHh
Confidence            999988 4466799999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>KOG4277|consensus

Probab=99.72  E-value=1.1e-15  Score=123.95  Aligned_cols=258  Identities=19%  Similarity=0.256  Sum_probs=163.5

Q ss_pred             CCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceE
Q psy14086          6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVE   85 (324)
Q Consensus         6 ~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (324)
                      -...|+++++||+.-+.++.+|||++||||++|+++.   .+.|+|+|+.++|++|..+..++             -+..
T Consensus        75 ig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~---a~dYRG~R~Kd~iieFAhR~a~a-------------iI~p  138 (468)
T KOG4277|consen   75 IGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH---AIDYRGGREKDAIIEFAHRCAAA-------------IIEP  138 (468)
T ss_pred             cCCceeecccccccchhhHhhhccCCCceEEEecCCe---eeecCCCccHHHHHHHHHhcccc-------------eeee
Confidence            3557999999999999999999999999999999655   88999999999999999998876             5666


Q ss_pred             cChhh--HHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh-CCccccceEEEEe
Q psy14086         86 LTEES--FEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS-FDIKSYPTLLWIE  161 (324)
Q Consensus        86 l~~~~--f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~-~~i~~~P~~~~~~  161 (324)
                      ++++.  |..+-.+. +.+|+|-+...+    +...+.++|..     ++.+++.-. ....++-. -.....|.+.+|+
T Consensus       139 i~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d~fidAASe-----~~~~a~FfS-aseeVaPe~~~~kempaV~VFK  208 (468)
T KOG4277|consen  139 INENQIEFEHLQARHQPFFVFFGTGEGP----LFDAFIDAASE-----KFSVARFFS-ASEEVAPEENDAKEMPAVAVFK  208 (468)
T ss_pred             cChhHHHHHHHhhccCceEEEEeCCCCc----HHHHHHHHhhh-----heeeeeeec-cccccCCcccchhhccceEEEc
Confidence            66643  44444444 556666544433    33345555544     344443322 22223333 3455789999998


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCC-cEEEEEeCCC----
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPW----  236 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~v~f~~~~----  236 (324)
                      +..-....+  .+.+++.+||++.--                     +.....++-.+.++-..+ .|++......    
T Consensus       209 Detf~i~de--~dd~dLseWinRERf---------------------~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~n  265 (468)
T KOG4277|consen  209 DETFEIEDE--GDDEDLSEWINRERF---------------------PGFLAADGFLLAEIGASGKLVALAVIDEKHKFN  265 (468)
T ss_pred             cceeEEEec--CchhHHHHHHhHhhc---------------------cchhhcccchHHHhCcCCceEEEEEeccccccC
Confidence            764443333  356889999987532                     223334444455554443 3433333322    


Q ss_pred             -ChhhhhhhHhHHHHHHHhhcC---CCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCe-eeeeec---CCCCHHH
Q psy14086        237 -CGHCKRLAPTWEELGTKLLDN---KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV-RTAEYN---GSRDLEE  308 (324)
Q Consensus       237 -c~~C~~~~~~~~~~a~~~~~~---~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~-~~~~~~---g~~~~~~  308 (324)
                       ..+-+.+..+.+++|+++...   ..++.|+++|.....+.-+.   .--+.|++++|.-.+ .+..-+   ...+.++
T Consensus       266 ns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM---~als~P~l~i~NtsnqeYfLse~d~qiknied  342 (468)
T KOG4277|consen  266 NSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILM---AALSEPHLFIFNTSNQEYFLSEDDPQIKNIED  342 (468)
T ss_pred             CcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHH---HhhcCCeEEEEecCchheeeccCChhhhhHHH
Confidence             234466788888998764322   13599999996542122111   122689999997544 332211   2257889


Q ss_pred             HHHHHHh
Q psy14086        309 LYQFILK  315 (324)
Q Consensus       309 l~~fi~~  315 (324)
                      +.+||++
T Consensus       343 ilqFien  349 (468)
T KOG4277|consen  343 ILQFIEN  349 (468)
T ss_pred             HHHHHhc
Confidence            9999976

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.72  E-value=4e-17  Score=117.76  Aligned_cols=100  Identities=46%  Similarity=0.941  Sum_probs=86.5

Q ss_pred             eccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086        214 LTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       214 l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~  292 (324)
                      |++++|++.+.. ++++|.||++||+.|+.+.+.|++++.. +....++.++.+|++.  +..++++++|+++|++++|+
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~--~~~~~~~~~i~~~P~~~~~~   77 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKE-LKGDPDIVLAKVDATA--EKDLASRFGVSGFPTIKFFP   77 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHH-hccCCceEEEEEEccc--hHHHHHhCCCCcCCEEEEec
Confidence            456777777654 4799999999999999999999999955 5544469999999999  89999999999999999999


Q ss_pred             cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        293 NGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       293 ~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      +|+....|.|..+.+.|.+||.++
T Consensus        78 ~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        78 KGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             CCCcceeecCCCCHHHHHHHHHhc
Confidence            887677899999999999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>KOG0912|consensus

Probab=99.72  E-value=7e-16  Score=125.30  Aligned_cols=255  Identities=20%  Similarity=0.268  Sum_probs=167.1

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      ..+.+|.|||+++..++.+|.|..|||+++|++|. .-..+|+|.|+++++.+|+++++..             .+.++.
T Consensus        49 ~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~-~~~rEYRg~RsVeaL~efi~kq~s~-------------~i~Ef~  114 (375)
T KOG0912|consen   49 GKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE-MMKREYRGQRSVEALIEFIEKQLSD-------------PINEFE  114 (375)
T ss_pred             cceEEEEcccchhhHHhhhhccccCceeeeeeccc-hhhhhhccchhHHHHHHHHHHHhcc-------------HHHHHH
Confidence            57899999999999999999999999999999876 5566899999999999999999864             343332


Q ss_pred             -hhhHHHHhc-CC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         88 -EESFEKYVS-LG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        88 -~~~f~~~~~-~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                       .+.+..... ++ .++.+|-....+.    ...++++|..+++  ...|..-=.    ++.....-.+.+ +++|+++.
T Consensus       115 sl~~l~n~~~p~K~~vIgyF~~kdspe----y~~~~kva~~lr~--dc~f~V~~g----D~~~~~~~~~~~-~~~f~pd~  183 (375)
T KOG0912|consen  115 SLDQLQNLDIPSKRTVIGYFPSKDSPE----YDNLRKVASLLRD--DCVFLVGFG----DLLKPHEPPGKN-ILVFDPDH  183 (375)
T ss_pred             hHHHHHhhhccccceEEEEeccCCCch----HHHHHHHHHHHhh--ccEEEeecc----ccccCCCCCCCc-eEEeCCCc
Confidence             234444443 33 3455555455555    3467788888887  555543211    111222222333 56666643


Q ss_pred             E--eeeecCC-CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCC-cEEEEEeCCCChhh
Q psy14086        165 K--LDKFQGS-RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHC  240 (324)
Q Consensus       165 ~--~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C  240 (324)
                      .  ...|.|. .+.+.+..||.+..-                     +-|+++|-++.+++.+++ |.+|.|+.+.....
T Consensus       184 ~~~~~~f~G~~~nf~el~~Wi~dKcv---------------------pLVREiTFeN~EELtEEGlPflILf~~kdD~~s  242 (375)
T KOG0912|consen  184 SEPNHEFLGSMTNFDELKQWIQDKCV---------------------PLVREITFENAEELTEEGLPFLILFRKKDDKES  242 (375)
T ss_pred             CCcCcccccccccHHHHHHHHHhcch---------------------hhhhhhhhccHHHHhhcCCceEEEEecCCcccH
Confidence            2  2358997 578999999999887                     559999999999999776 89999998754422


Q ss_pred             hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC--CccceE--------EEEecCeeeeeecCCCCHHHHH
Q psy14086        241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV--DGFPSI--------YVYKNGVRTAEYNGSRDLEELY  310 (324)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i--~~~P~l--------~~~~~g~~~~~~~g~~~~~~l~  310 (324)
                        ....-..+++++......+.+...|+..  -.-....+|-  ...|.|        ++|++++.+      ..+..|.
T Consensus       243 --~k~F~~aI~ReL~~e~~~in~l~ADG~~--f~hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~di------~~pGkLk  312 (375)
T KOG0912|consen  243 --EKIFKNAIARELDDETLAINFLTADGKV--FKHPLRHLGKSPDDLPVIAIDSFRHMYLFPDFNDI------NIPGKLK  312 (375)
T ss_pred             --HHHHHHHHHHHhhhhhhccceeecCcce--ecchHHHhCCCcccCcEEEeeccceeeecCchhhh------cCccHHH
Confidence              2222245565555444347777777655  3322233332  245544        444444332      2344788


Q ss_pred             HHHHhhcc
Q psy14086        311 QFILKHKV  318 (324)
Q Consensus       311 ~fi~~~~~  318 (324)
                      +||.+..+
T Consensus       313 qFv~DL~s  320 (375)
T KOG0912|consen  313 QFVADLHS  320 (375)
T ss_pred             HHHHHHhC
Confidence            89887543

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.72  E-value=9.4e-17  Score=114.34  Aligned_cols=96  Identities=17%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             CeeEeccccccccccC-CcEEEEEeCCC--ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        210 PVVSLTSENFNDVIKS-GTVFIKFFAPW--CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~--c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ....++..+|++.+.. ++++|.||++|  |++|+.+.|.+++++.+ +..  .+.|+.+|++.  +++++.+|+|.++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e-~~~--~v~f~kVdid~--~~~la~~f~V~sIP   85 (111)
T cd02965          11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKA-FPG--RFRAAVVGRAD--EQALAARFGVLRTP   85 (111)
T ss_pred             CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHH-CCC--cEEEEEEECCC--CHHHHHHcCCCcCC
Confidence            3667888999988865 68999999997  99999999999999965 544  58899999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHH
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELY  310 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~  310 (324)
                      |+++|++|+.+..+.|..+.+++.
T Consensus        86 Tli~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          86 ALLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEEECCEEEEEEeCccCHHHHh
Confidence            999999999998899988877764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR01068 thioredoxin thioredoxin

Probab=99.72  E-value=1.7e-16  Score=114.29  Aligned_cols=98  Identities=32%  Similarity=0.686  Sum_probs=88.1

Q ss_pred             cChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         86 LTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        86 l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      ++.++|.+.+.+  ++++++||++||++|+.+.+.++++++.+.+  ++.|+.+|++.+..++++|+|..+|+++++++|
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence            356778777633  3789999999999999999999999999976  799999999999999999999999999999999


Q ss_pred             eEeeeecCCCCHHHHHHHHHhh
Q psy14086        164 KKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       164 ~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      +...++.|..+.+.|.+||++.
T Consensus        79 ~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        79 KEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             cEeeeecCCCCHHHHHHHHHhh
Confidence            8888889999999999999875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.71  E-value=1.9e-16  Score=120.68  Aligned_cols=91  Identities=22%  Similarity=0.524  Sum_probs=81.7

Q ss_pred             CCCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc---
Q psy14086         80 NEGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS---  153 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~---  153 (324)
                      ...+.+++.++|++.+.   .++++|.||++||++|+.+.|.|+++++++.+ .++.|+.||+++++.++++|+|++   
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~  105 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL  105 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence            46789999999998873   23689999999999999999999999999864 259999999999999999999988   


Q ss_pred             ---cceEEEEeCCeEeeeecC
Q psy14086        154 ---YPTLLWIESGKKLDKFQG  171 (324)
Q Consensus       154 ---~P~~~~~~~g~~~~~~~g  171 (324)
                         +||+++|++|+...++.|
T Consensus       106 v~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         106 SKQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             cCCCCEEEEEECCEEEEEEec
Confidence               999999999999888886

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0912|consensus

Probab=99.71  E-value=1.6e-16  Score=128.91  Aligned_cols=197  Identities=27%  Similarity=0.477  Sum_probs=136.7

Q ss_pred             cChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC---CCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         86 LTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE---EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        86 l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      ++.+|++..+... .++|.|||.||+.++.++|.|.++|..++.+   +++.++.|||+.+..++.+|.|..|||+-+|+
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            3556777777444 5799999999999999999999999988652   58999999999999999999999999999999


Q ss_pred             CCeEee-eecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc-cccccc-C-CcEEEEEeCCCC
Q psy14086        162 SGKKLD-KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN-FNDVIK-S-GTVFIKFFAPWC  237 (324)
Q Consensus       162 ~g~~~~-~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~-~-~~~~v~f~~~~c  237 (324)
                      +|.... .|.|.++++.+.+||+..++                     .++.+....+ +..... + +.++.+|-....
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s---------------------~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kds  139 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLS---------------------DPINEFESLDQLQNLDIPSKRTVIGYFPSKDS  139 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhc---------------------cHHHHHHhHHHHHhhhccccceEEEEeccCCC
Confidence            997654 69999999999999999887                     2344333322 333332 2 356666664433


Q ss_pred             hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-e-eeecCC-CCHHHHHHHHH
Q psy14086        238 GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-T-AEYNGS-RDLEELYQFIL  314 (324)
Q Consensus       238 ~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~-~~~~g~-~~~~~l~~fi~  314 (324)
                      +    -...+.++| .+++..-.+.++.-|...        ...-.+.+ +++|+.+.. . ..|.|. .+.+.+.+||.
T Consensus       140 p----ey~~~~kva-~~lr~dc~f~V~~gD~~~--------~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~  205 (375)
T KOG0912|consen  140 P----EYDNLRKVA-SLLRDDCVFLVGFGDLLK--------PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQ  205 (375)
T ss_pred             c----hHHHHHHHH-HHHhhccEEEeecccccc--------CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHH
Confidence            2    334556677 445553333333222221        22222333 445544422 2 268998 46899999998


Q ss_pred             hhc
Q psy14086        315 KHK  317 (324)
Q Consensus       315 ~~~  317 (324)
                      +.+
T Consensus       206 dKc  208 (375)
T KOG0912|consen  206 DKC  208 (375)
T ss_pred             hcc
Confidence            754

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.70  E-value=1.3e-16  Score=114.71  Aligned_cols=98  Identities=42%  Similarity=0.950  Sum_probs=88.1

Q ss_pred             EcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         85 ELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        85 ~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      .++.++|.+.+.++ +++|+||++||++|+.+.+.|.++++.++....+.|+.+|++.+..++++|+|+++|++++++++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            57888999988665 78999999999999999999999999995223899999999999999999999999999999987


Q ss_pred             -eEeeeecCCCCHHHHHHHH
Q psy14086        164 -KKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       164 -~~~~~~~g~~~~~~i~~fi  182 (324)
                       ....+|.|..+.++|.+|+
T Consensus        82 ~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          82 SKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CcccccCCCCcCHHHHHhhC
Confidence             7777899999999998885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.70  E-value=9.1e-17  Score=117.06  Aligned_cols=101  Identities=25%  Similarity=0.635  Sum_probs=83.3

Q ss_pred             CeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh-hcCCCc
Q psy14086        210 PVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN-QEGVDG  284 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~i~~  284 (324)
                      .|..++.++|+..+.    +++++|.||++||++|+.+.|.|.+++.. +.. .++.++.+|++.. +..++. .+++++
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~-~~~-~~~~~~~vd~d~~-~~~~~~~~~~v~~   78 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEK-LAG-SNVKVAKFNADGE-QREFAKEELQLKS   78 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHH-hcc-CCeEEEEEECCcc-chhhHHhhcCCCc
Confidence            478889999998874    35899999999999999999999999966 442 2599999999861 356665 599999


Q ss_pred             cceEEEEecC-eeeeeecCC-CCHHHHHHHH
Q psy14086        285 FPSIYVYKNG-VRTAEYNGS-RDLEELYQFI  313 (324)
Q Consensus       285 ~P~l~~~~~g-~~~~~~~g~-~~~~~l~~fi  313 (324)
                      +||+++|++| .....|.|. ++.+.|.+||
T Consensus        79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999999766 456689995 8999999986

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.70  E-value=1.3e-16  Score=114.88  Aligned_cols=93  Identities=25%  Similarity=0.424  Sum_probs=77.5

Q ss_pred             ccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc---hhhhhhcCCCccceEE
Q psy14086        216 SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS---KDLCNQEGVDGFPSIY  289 (324)
Q Consensus       216 ~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~---~~~~~~~~i~~~P~l~  289 (324)
                      .++|++.+.   +++++|.||++||++|+.+.|.+++++.+ + .  .+.|+.+|++.  +   .+++++++|+++||++
T Consensus         3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~-~-~--~v~~~~vd~d~--~~~~~~l~~~~~V~~~Pt~~   76 (103)
T cd02985           3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRT-C-N--DVVFLLVNGDE--NDSTMELCRREKIIEVPHFL   76 (103)
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHH-C-C--CCEEEEEECCC--ChHHHHHHHHcCCCcCCEEE
Confidence            345666653   46899999999999999999999999966 4 3  58999999987  5   3789999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +|++|+.+..+.|. ..++|.+-|..
T Consensus        77 ~~~~G~~v~~~~G~-~~~~l~~~~~~  101 (103)
T cd02985          77 FYKDGEKIHEEEGI-GPDELIGDVLY  101 (103)
T ss_pred             EEeCCeEEEEEeCC-CHHHHHHHHHh
Confidence            99999998899995 66777776654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.69  E-value=3.5e-16  Score=114.71  Aligned_cols=87  Identities=28%  Similarity=0.460  Sum_probs=78.4

Q ss_pred             CceEcChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVELTEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+.+++.++|.+.+.+    .+++|.||++||++|+.+.|.+++++.++.+   +.|++||++++ .++++|+|+++|++
T Consensus         5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~-~l~~~~~i~~~Pt~   80 (113)
T cd02957           5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKA-FLVNYLDIKVLPTL   80 (113)
T ss_pred             eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhh-HHHHhcCCCcCCEE
Confidence            5778999999888743    4679999999999999999999999999864   89999999988 99999999999999


Q ss_pred             EEEeCCeEeeeecCC
Q psy14086        158 LWIESGKKLDKFQGS  172 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~  172 (324)
                      ++|++|+.+.++.|.
T Consensus        81 ~~f~~G~~v~~~~G~   95 (113)
T cd02957          81 LVYKNGELIDNIVGF   95 (113)
T ss_pred             EEEECCEEEEEEecH
Confidence            999999998888764

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.69  E-value=3.3e-16  Score=112.60  Aligned_cols=95  Identities=20%  Similarity=0.442  Sum_probs=79.7

Q ss_pred             ccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086        215 TSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       215 ~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      +.++|++.+.+ ++++|.||++||++|+.+.|.+++++.+ +.. ..+.|+.+|++.   .+++++|+|+++||+++|++
T Consensus         6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~-~~~-~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~~   80 (102)
T cd02948           6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNE-LGD-DLLHFATAEADT---IDTLKRYRGKCEPTFLFYKN   80 (102)
T ss_pred             CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHH-cCC-CcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEEC
Confidence            45667777754 5799999999999999999999999865 432 247899999885   67889999999999999999


Q ss_pred             CeeeeeecCCCCHHHHHHHHHh
Q psy14086        294 GVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       294 g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      |+.+....|. +.+.+.++|.+
T Consensus        81 g~~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          81 GELVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             CEEEEEEecC-ChHHHHHHHhh
Confidence            9988888885 88999998864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.68  E-value=8.4e-16  Score=112.22  Aligned_cols=98  Identities=21%  Similarity=0.355  Sum_probs=83.7

Q ss_pred             CceEcCh-hhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTE-ESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~-~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++. ++|.+.+. .++++|.||++||++|+.+.|.++++++++.+   +.|+.+|+++.+.++++|+|..+|++++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~l~   81 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTVIL   81 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence            4666766 88888884 45789999999999999999999999999864   8999999999999999999999999999


Q ss_pred             EeCCeEeeeecCC--------CCHHHHHHHH
Q psy14086        160 IESGKKLDKFQGS--------RTLETLVNYV  182 (324)
Q Consensus       160 ~~~g~~~~~~~g~--------~~~~~i~~fi  182 (324)
                      |++|+.+.++.|.        .+.+++..|+
T Consensus        82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999887766543        4566666665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.68  E-value=4.4e-15  Score=119.13  Aligned_cols=156  Identities=22%  Similarity=0.315  Sum_probs=133.8

Q ss_pred             ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCC-CChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGT-RDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      .+.|+.+.   +.++|++++|.. |+|++|+.++ .+...|.|. .+.++|..|+....-|             .+..+|
T Consensus        22 ~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~-~~~~~y~~~~~~~~~l~~fI~~~~~P-------------~v~~~t   83 (184)
T PF13848_consen   22 DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFD-EKPVVYDGDKFTPEELKKFIKKNSFP-------------LVPELT   83 (184)
T ss_dssp             TSEEEEEE----HHHHHHCTCSS-SEEEEEECTT-TSEEEESSSTTSHHHHHHHHHHHSST-------------SCEEES
T ss_pred             CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCC-CCceecccccCCHHHHHHHHHHhccc-------------cccccc
Confidence            47888887   778999999999 9999999865 567899998 8999999999999877             899999


Q ss_pred             hhhHHHHhcCC-C-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc--ccceEEEEeC-
Q psy14086         88 EESFEKYVSLG-N-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK--SYPTLLWIES-  162 (324)
Q Consensus        88 ~~~f~~~~~~~-~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~-  162 (324)
                      .+++..+...+ + +++.|..........+...++.+|.++++  ++.|+.+|+...+.+++.+|++  .+|+++++.. 
T Consensus        84 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~  161 (184)
T PF13848_consen   84 PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSN  161 (184)
T ss_dssp             TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETT
T ss_pred             hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECC
Confidence            99999999776 4 56777777778889999999999999998  8999999999889999999998  8999999984 


Q ss_pred             -CeEeeeecCCCCHHHHHHHHHh
Q psy14086        163 -GKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       163 -g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                       ++....+.|..+.++|.+|+++
T Consensus       162 ~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  162 KGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CCcEEcCCCCCCCHHHHHHHhcC
Confidence             3333334788999999999974

...

>KOG0907|consensus

Probab=99.68  E-value=3.9e-16  Score=111.27  Aligned_cols=83  Identities=29%  Similarity=0.694  Sum_probs=75.1

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      ++++|.||++||++|+.+.|.+.+++.+|.+   +.|++||+++...+++.++|+.+||++++++|+...++.|.. .+.
T Consensus        22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~-~~~   97 (106)
T KOG0907|consen   22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN-KAE   97 (106)
T ss_pred             CeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCC-HHH
Confidence            5678999999999999999999999999986   999999999999999999999999999999999999999884 447


Q ss_pred             HHHHHHh
Q psy14086        178 LVNYVSK  184 (324)
Q Consensus       178 i~~fi~~  184 (324)
                      +.+.+..
T Consensus        98 l~~~i~~  104 (106)
T KOG0907|consen   98 LEKKIAK  104 (106)
T ss_pred             HHHHHHh
Confidence            7766654

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.68  E-value=4.1e-16  Score=118.88  Aligned_cols=91  Identities=23%  Similarity=0.501  Sum_probs=79.3

Q ss_pred             CCCeeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        208 PEPVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +..+..++.++|++.+..   ++++|.||++||++|+.+.|.+++++.+ +.. .++.|+.+|+++  +++++++|+|++
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~-~~~-~~v~f~~VDvd~--~~~la~~~~V~~  102 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLK-YNN-NNLKFGKIDIGR--FPNVAEKFRVST  102 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-ccc-CCeEEEEEECCC--CHHHHHHcCcee
Confidence            467899999999987742   4799999999999999999999999965 432 259999999999  899999999988


Q ss_pred             ------cceEEEEecCeeeeeecC
Q psy14086        285 ------FPSIYVYKNGVRTAEYNG  302 (324)
Q Consensus       285 ------~P~l~~~~~g~~~~~~~g  302 (324)
                            +||+++|++|+.+.++.|
T Consensus       103 ~~~v~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         103 SPLSKQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             cCCcCCCCEEEEEECCEEEEEEec
Confidence                  999999999998877776

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.67  E-value=1.2e-15  Score=113.78  Aligned_cols=101  Identities=13%  Similarity=0.202  Sum_probs=86.4

Q ss_pred             ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE-EEeC
Q psy14086         87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL-WIES  162 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~-~~~~  162 (324)
                      +.++|++.+.   +++++|.||++||++|+.+.|.++++++++.+  .+.|+.||+++++++++.|+|++.|+++ +|++
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~   87 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN   87 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence            3677887773   45789999999999999999999999999987  7899999999999999999999776665 9999


Q ss_pred             Ce-EeeeecC--------CCCHHHHHHHHHhhhCCC
Q psy14086        163 GK-KLDKFQG--------SRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       163 g~-~~~~~~g--------~~~~~~i~~fi~~~~~~~  189 (324)
                      |+ .+.+..|        ..+.++|.+-++..+.+.
T Consensus        88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a  123 (142)
T PLN00410         88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA  123 (142)
T ss_pred             CeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence            98 6777778        578888888888887654

>KOG0907|consensus

Probab=99.67  E-value=7.3e-16  Score=109.89  Aligned_cols=84  Identities=35%  Similarity=0.674  Sum_probs=74.5

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      +.++|.||++|||+|+.+.|.+.++|.+ +.   ++.|+++|+++  ..++++.++|..+||+++|++|+....+.|. +
T Consensus        22 kliVvdF~a~wCgPCk~i~P~~~~La~~-y~---~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa-~   94 (106)
T KOG0907|consen   22 KLVVVDFYATWCGPCKAIAPKFEKLAEK-YP---DVVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA-N   94 (106)
T ss_pred             CeEEEEEECCCCcchhhhhhHHHHHHHH-CC---CCEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEEEEecC-C
Confidence            5799999999999999999999999966 43   38999999999  8999999999999999999999998888887 5


Q ss_pred             HHHHHHHHHhh
Q psy14086        306 LEELYQFILKH  316 (324)
Q Consensus       306 ~~~l~~fi~~~  316 (324)
                      .+.+.+.|.++
T Consensus        95 ~~~l~~~i~~~  105 (106)
T KOG0907|consen   95 KAELEKKIAKH  105 (106)
T ss_pred             HHHHHHHHHhc
Confidence            56777777643

>TIGR01068 thioredoxin thioredoxin

Probab=99.66  E-value=9e-16  Score=110.41  Aligned_cols=98  Identities=32%  Similarity=0.655  Sum_probs=84.5

Q ss_pred             ccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086        215 TSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       215 ~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~  292 (324)
                      +.++|.+.+.+  ++++|.||++||++|+.+.+.+++++.+ +..  ++.|+.+|++.  ++.+++.|++.++|++++|+
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~   76 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKE-YEG--KVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFK   76 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHH-hcC--CeEEEEEECCC--CHHHHHHcCCCcCCEEEEEe
Confidence            44566666543  4899999999999999999999999955 443  69999999998  88999999999999999999


Q ss_pred             cCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        293 NGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       293 ~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +|+....+.|..+.+.+.+||.+.+
T Consensus        77 ~g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        77 NGKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             CCcEeeeecCCCCHHHHHHHHHhhC
Confidence            9988878889999999999998753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.66  E-value=8e-16  Score=112.79  Aligned_cols=88  Identities=26%  Similarity=0.422  Sum_probs=76.8

Q ss_pred             CCeeEeccccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +.+..++.++|.+.+.+    .+++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  + +++++++|++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~-~~---~v~f~~vd~~~--~-~l~~~~~i~~   76 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAK-YP---ETKFVKINAEK--A-FLVNYLDIKV   76 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHH-CC---CcEEEEEEchh--h-HHHHhcCCCc
Confidence            56888999889887743    5799999999999999999999999965 43   48899999998  6 9999999999


Q ss_pred             cceEEEEecCeeeeeecCC
Q psy14086        285 FPSIYVYKNGVRTAEYNGS  303 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~  303 (324)
                      +||+++|++|+.+..+.|.
T Consensus        77 ~Pt~~~f~~G~~v~~~~G~   95 (113)
T cd02957          77 LPTLLVYKNGELIDNIVGF   95 (113)
T ss_pred             CCEEEEEECCEEEEEEecH
Confidence            9999999999988777763

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.65  E-value=4.3e-15  Score=113.06  Aligned_cols=99  Identities=17%  Similarity=0.383  Sum_probs=84.1

Q ss_pred             hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEEEe-CCe
Q psy14086         89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLWIE-SGK  164 (324)
Q Consensus        89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~-~g~  164 (324)
                      ..|+..+ .+++++|.||++||++|+.+.|.+.++++.+.+  ++.|+.+|++.  ...++++|+|+++|++++|+ +|+
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~   88 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN   88 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence            3455555 345789999999999999999999999999976  57777776664  35789999999999999996 688


Q ss_pred             EeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        165 KLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ...++.|..+.+.|.++|.+.+.+.
T Consensus        89 ~v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          89 EEGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            8888999999999999999998865

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.65  E-value=1.7e-15  Score=110.64  Aligned_cols=99  Identities=21%  Similarity=0.316  Sum_probs=82.6

Q ss_pred             CCeeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +.+..++. +.|.+.+.+ ++++|.||++||++|+.+.|.+++++++ +.   ++.|+.+|++.  ++++.++|+|.++|
T Consensus         4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~-~~---~i~f~~Vd~~~--~~~l~~~~~v~~vP   77 (113)
T cd02989           4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKK-HL---ETKFIKVNAEK--APFLVEKLNIKVLP   77 (113)
T ss_pred             CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHH-cC---CCEEEEEEccc--CHHHHHHCCCccCC
Confidence            56778887 678887754 5899999999999999999999999965 43   48999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecC--------CCCHHHHHHHH
Q psy14086        287 SIYVYKNGVRTAEYNG--------SRDLEELYQFI  313 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g--------~~~~~~l~~fi  313 (324)
                      |+++|++|+.+..+.|        ..+.+++..||
T Consensus        78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999999987765543        24566777665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.65  E-value=1e-15  Score=110.93  Aligned_cols=101  Identities=46%  Similarity=0.949  Sum_probs=85.3

Q ss_pred             eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      +..+++++|++.+.+  ++++|.||++||++|+.+.|.|.+++.+ +....++.++.+|++.. ++.++++++|.++|++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~   79 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAV-FANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTL   79 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHH-hCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEE
Confidence            567788888887753  3799999999999999999999999966 44334699999998762 4788999999999999


Q ss_pred             EEEecC-eeeeeecCCCCHHHHHHHH
Q psy14086        289 YVYKNG-VRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       289 ~~~~~g-~~~~~~~g~~~~~~l~~fi  313 (324)
                      ++|++| +....|.|.++.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          80 KFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEeCCCCCccccCCccCHHHHHhhC
Confidence            999876 5567899999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.64  E-value=1e-15  Score=110.76  Aligned_cols=92  Identities=22%  Similarity=0.381  Sum_probs=79.5

Q ss_pred             hhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc----chhhhhhCCccccceEEEE
Q psy14086         89 ESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ----HRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        89 ~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~~~  160 (324)
                      +.|.+.+. +++++|+||++||++|+.+.+.+   .+++..+++  ++.++.+|++.    ...++++|+|+++|++++|
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            45666664 44689999999999999999988   678888876  79999999886    5789999999999999999


Q ss_pred             e--CCeEeeeecCCCCHHHHHHHH
Q psy14086        161 E--SGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       161 ~--~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      +  +|+...++.|..+.++|.++|
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHh
Confidence            8  577778899999999999887

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.64  E-value=8.1e-16  Score=110.52  Aligned_cols=98  Identities=47%  Similarity=1.027  Sum_probs=85.0

Q ss_pred             EeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE
Q psy14086        213 SLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY  291 (324)
Q Consensus       213 ~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~  291 (324)
                      .++.++|.+.+.++ +++|.||++||++|+.+.+.|.++++. +.....+.++.+|++.  +..+++.++|+++|++++|
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKE-LKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLF   78 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHH-hccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEE
Confidence            46677888888665 899999999999999999999999965 4323379999999998  8999999999999999999


Q ss_pred             ecC-eeeeeecCCCCHHHHHHHH
Q psy14086        292 KNG-VRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       292 ~~g-~~~~~~~g~~~~~~l~~fi  313 (324)
                      ++| +....|.|..+.++|.+|+
T Consensus        79 ~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          79 PNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             cCCCcccccCCCCcCHHHHHhhC
Confidence            877 6777899999999998885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.64  E-value=1.9e-15  Score=110.66  Aligned_cols=102  Identities=33%  Similarity=0.759  Sum_probs=81.3

Q ss_pred             CeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      .+..++.++|++.+.+  ++++|.||++||++|+.+.|.|++++.++......+.++.+|++...+.+++++++++++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            4788999999998865  37999999999999999999999999664332235899999986533678899999999999


Q ss_pred             EEEEecCeee----eeecCC-CCHHHHHH
Q psy14086        288 IYVYKNGVRT----AEYNGS-RDLEELYQ  311 (324)
Q Consensus       288 l~~~~~g~~~----~~~~g~-~~~~~l~~  311 (324)
                      +++|+.|...    ..|+|. +..+++.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNELRE  110 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence            9999887642    246666 66666654

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.64  E-value=2.7e-15  Score=133.53  Aligned_cols=105  Identities=25%  Similarity=0.564  Sum_probs=89.0

Q ss_pred             CCCceEcChhhHHHHhc----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-hhh-hhCCccc
Q psy14086         80 NEGLVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-SIC-QSFDIKS  153 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-~~~-~~~~i~~  153 (324)
                      ...+..|+.++|++.+.    +++++|.||++||++|+.+.|.|+++++++++. .+.|+.+|++.+. .++ ++|+|++
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence            45789999999999873    447899999999999999999999999999762 3899999998653 444 7899999


Q ss_pred             cceEEEEeCCe-Eeeeec-CCCCHHHHHHHHHhh
Q psy14086        154 YPTLLWIESGK-KLDKFQ-GSRTLETLVNYVSKM  185 (324)
Q Consensus       154 ~P~~~~~~~g~-~~~~~~-g~~~~~~i~~fi~~~  185 (324)
                      +||+++|++|. ....|. |.++.++|..||+..
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            99999999874 445687 579999999999753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.63  E-value=3.4e-15  Score=132.86  Aligned_cols=106  Identities=24%  Similarity=0.575  Sum_probs=91.5

Q ss_pred             CCCCceEcChhhHHHHh----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhh-hCCcc
Q psy14086         79 VNEGLVELTEESFEKYV----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQ-SFDIK  152 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~-~~~i~  152 (324)
                      ....+..|+.++|++++    .++.++|.||+|||++|+.+.|.|.++++.+.+. .+.|+.+|++ .+..++. +|+|+
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~  421 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLG  421 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCc
Confidence            34578999999999887    3457899999999999999999999999999753 5999999999 7788886 69999


Q ss_pred             ccceEEEEeCCe-EeeeecC-CCCHHHHHHHHHhh
Q psy14086        153 SYPTLLWIESGK-KLDKFQG-SRTLETLVNYVSKM  185 (324)
Q Consensus       153 ~~P~~~~~~~g~-~~~~~~g-~~~~~~i~~fi~~~  185 (324)
                      ++||+++|++|. ....|.| .++.++|..||+..
T Consensus       422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            999999998864 4556875 69999999999864

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.63  E-value=5.1e-15  Score=105.68  Aligned_cols=92  Identities=27%  Similarity=0.547  Sum_probs=79.6

Q ss_pred             hhhHHHHhc-C--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         88 EESFEKYVS-L--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        88 ~~~f~~~~~-~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      .++|++.+. .  ++++|.||++||++|+.+.+.|++++..+..  .+.++.+|+++.+.++++|+++++|++++|++|+
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~   79 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT   79 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence            567777763 3  5679999999999999999999999999754  7999999999999999999999999999999998


Q ss_pred             EeeeecCCCCHHHHHHHH
Q psy14086        165 KLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi  182 (324)
                      ...++.|. +.+.|.+.|
T Consensus        80 ~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          80 IVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEEEeCC-CHHHHHHhh
Confidence            88777775 667777665

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.63  E-value=3.9e-15  Score=106.10  Aligned_cols=85  Identities=19%  Similarity=0.440  Sum_probs=79.1

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      .++++++||++||+.|+.+.+.++++++.+.+  ++.++.+|+++.+.++++++|.++|+++++++|+...++.|..+.+
T Consensus        13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~   90 (97)
T cd02949          13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS   90 (97)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence            44679999999999999999999999999976  7999999999999999999999999999999999888999999999


Q ss_pred             HHHHHHH
Q psy14086        177 TLVNYVS  183 (324)
Q Consensus       177 ~i~~fi~  183 (324)
                      +|.+|++
T Consensus        91 ~~~~~l~   97 (97)
T cd02949          91 EYREFIE   97 (97)
T ss_pred             HHHHhhC
Confidence            9999873

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.63  E-value=3e-15  Score=111.68  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=81.0

Q ss_pred             ccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE-EE
Q psy14086        216 SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY-VY  291 (324)
Q Consensus       216 ~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~-~~  291 (324)
                      ...|++.+.   +++++|.||++||++|+.+.|.++++|.+ +..  .+.|+.+|+++  +++++..|+|++.|+++ +|
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~-~~~--~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ff   85 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAET-IKN--FAVIYLVDITE--VPDFNTMYELYDPCTVMFFF   85 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHH-cCC--ceEEEEEECCC--CHHHHHHcCccCCCcEEEEE
Confidence            455777663   45899999999999999999999999966 443  48889999999  99999999999777666 88


Q ss_pred             ecCe-eeeeecC--------CCCHHHHHHHHHhhcc
Q psy14086        292 KNGV-RTAEYNG--------SRDLEELYQFILKHKV  318 (324)
Q Consensus       292 ~~g~-~~~~~~g--------~~~~~~l~~fi~~~~~  318 (324)
                      ++|+ .+....|        ..+.++|.+-++..+.
T Consensus        86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~  121 (142)
T PLN00410         86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR  121 (142)
T ss_pred             ECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence            9998 6777788        5678888888877644

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.62  E-value=2.7e-15  Score=133.55  Aligned_cols=105  Identities=25%  Similarity=0.584  Sum_probs=87.0

Q ss_pred             CCCCeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch-hhh-hhc
Q psy14086        207 KPEPVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK-DLC-NQE  280 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~-~~~-~~~  280 (324)
                      ....|..|+.++|++.+.    +++++|.||+|||++|+.+.|.|+++|.+ +.. ..+.|+.+|++.  +. .++ ..|
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~-~~~-~~v~~~kVdvD~--~~~~~~~~~~  424 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEK-LAG-SGVKVAKFRADG--DQKEFAKQEL  424 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-hcc-CCcEEEEEECCC--CccHHHHHHc
Confidence            456799999999999874    35799999999999999999999999966 433 248899999987  32 344 689


Q ss_pred             CCCccceEEEEecCe-eeeeec-CCCCHHHHHHHHHh
Q psy14086        281 GVDGFPSIYVYKNGV-RTAEYN-GSRDLEELYQFILK  315 (324)
Q Consensus       281 ~i~~~P~l~~~~~g~-~~~~~~-g~~~~~~l~~fi~~  315 (324)
                      +|+++||+++|++|. ....|. |.++.+.|..||+.
T Consensus       425 ~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       425 QLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             CCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            999999999999885 345687 57999999999975

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.62  E-value=1.1e-13  Score=111.02  Aligned_cols=170  Identities=22%  Similarity=0.300  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-eEeeeecCC-CCHHHHHHHHHhhhCCCCC
Q psy14086        114 SLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-KKLDKFQGS-RTLETLVNYVSKMKGPLNK  191 (324)
Q Consensus       114 ~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-~~~~~~~g~-~~~~~i~~fi~~~~~~~~~  191 (324)
                      .....|.++|+.+++  .+.|+.+.   +..+++.+++.. |++++++++ +....|.|. .+.++|.+||....-    
T Consensus         7 ~~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~----   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKG--DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF----   76 (184)
T ss_dssp             HHHHHHHHHHHHHTT--TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS----
T ss_pred             HHHHHHHHHHHhCcC--CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc----
Confidence            356789999999998  69999765   567999999998 999999983 455679998 899999999999877    


Q ss_pred             CCCCCccccCCCCCCCCCCeeEeccccccccccCC-c-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086        192 KADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-T-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT  269 (324)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~  269 (324)
                                       +.|..++..++..+...+ + +++.|..........+...++.+|.+ +++  ++.|+++|++
T Consensus        77 -----------------P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~~~--~~~f~~~d~~  136 (184)
T PF13848_consen   77 -----------------PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKK-FKG--KINFVYVDAD  136 (184)
T ss_dssp             -----------------TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHC-TTT--TSEEEEEETT
T ss_pred             -----------------ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHh-cCC--eEEEEEeehH
Confidence                             569999999999998775 4 77777766666777888889999965 444  6999999999


Q ss_pred             CccchhhhhhcCCC--ccceEEEEe--cCeeeeeecCCCCHHHHHHHHHh
Q psy14086        270 QELSKDLCNQEGVD--GFPSIYVYK--NGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       270 ~~~~~~~~~~~~i~--~~P~l~~~~--~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      .  .+.+.+.++++  .+|+++++.  .++....+.|..+.+.|.+||++
T Consensus       137 ~--~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  137 D--FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             T--THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             H--hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            7  78899999998  899999997  34433345888999999999974

...

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.61  E-value=6.3e-15  Score=112.14  Aligned_cols=98  Identities=17%  Similarity=0.306  Sum_probs=80.6

Q ss_pred             cccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cCee
Q psy14086        219 FNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVR  296 (324)
Q Consensus       219 ~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g~~  296 (324)
                      +++.+. +++++|.||++||++|+.+.|.+.+++.+ +..  .+.|+.+|++......++..|+|.++|++++|. +|+.
T Consensus        13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~-~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~   89 (142)
T cd02950          13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQK-YGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE   89 (142)
T ss_pred             HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHH-hcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence            555443 45899999999999999999999999965 444  477787777763245788999999999999994 7888


Q ss_pred             eeeecCCCCHHHHHHHHHhhccc
Q psy14086        297 TAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       297 ~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +..+.|..+.+.|.++|.+.+..
T Consensus        90 v~~~~G~~~~~~l~~~l~~l~~~  112 (142)
T cd02950          90 EGQSIGLQPKQVLAQNLDALVAG  112 (142)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcC
Confidence            88899999999999999987753

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.61  E-value=1.1e-14  Score=114.51  Aligned_cols=101  Identities=23%  Similarity=0.360  Sum_probs=86.9

Q ss_pred             CCCceEcCh-hhHHHHhcCC----CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcccc
Q psy14086         80 NEGLVELTE-ESFEKYVSLG----NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY  154 (324)
Q Consensus        80 ~~~~~~l~~-~~f~~~~~~~----~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~  154 (324)
                      ...+.+++. ++|.+.+.+.    +++|.||++||++|+.+.|.|..++.++.   .+.|++||++.. .++.+|+|..+
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~v  136 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDAL  136 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCC
Confidence            456888988 9999888432    68999999999999999999999999986   499999999987 89999999999


Q ss_pred             ceEEEEeCCeEeeeecC-------CCCHHHHHHHHHh
Q psy14086        155 PTLLWIESGKKLDKFQG-------SRTLETLVNYVSK  184 (324)
Q Consensus       155 P~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~  184 (324)
                      ||+++|++|+.+.++.|       .++.+.|..|+.+
T Consensus       137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            99999999988766653       3678888887765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.61  E-value=8e-15  Score=104.46  Aligned_cols=85  Identities=20%  Similarity=0.501  Sum_probs=76.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      ++++++.||++||+.|+.+.|.+++++++ +..  ++.++.+|++.  .+++..++++.++|++++|++|+.+..+.|..
T Consensus        13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~-~~~--~v~~~~id~d~--~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~   87 (97)
T cd02949          13 DRLILVLYTSPTCGPCRTLKPILNKVIDE-FDG--AVHFVEIDIDE--DQEIAEAAGIMGTPTVQFFKDKELVKEISGVK   87 (97)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHHH-hCC--ceEEEEEECCC--CHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence            45799999999999999999999999955 444  69999999998  88999999999999999999999888899999


Q ss_pred             CHHHHHHHHH
Q psy14086        305 DLEELYQFIL  314 (324)
Q Consensus       305 ~~~~l~~fi~  314 (324)
                      +.+.+.+||+
T Consensus        88 ~~~~~~~~l~   97 (97)
T cd02949          88 MKSEYREFIE   97 (97)
T ss_pred             cHHHHHHhhC
Confidence            9999998873

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.61  E-value=4.5e-15  Score=132.08  Aligned_cols=106  Identities=25%  Similarity=0.626  Sum_probs=88.8

Q ss_pred             CCCCeeEecccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-Cccchhhhh-hc
Q psy14086        207 KPEPVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCN-QE  280 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~-~~  280 (324)
                      ....|..++.++|++.+.    +++++|.||+|||++|+.+.|.|++++.+ +.. .++.|+.+|++ .  +.+++. .|
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~-~~~-~~V~f~kVD~d~~--~~~la~~~~  418 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEK-LAG-SGVKVAKFRADGD--QKEFAKQEL  418 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-hcc-CCeEEEEEECCCc--chHHHHhhC
Confidence            446789999999998873    45799999999999999999999999966 432 26999999999 5  677775 69


Q ss_pred             CCCccceEEEEecCe-eeeeecC-CCCHHHHHHHHHhh
Q psy14086        281 GVDGFPSIYVYKNGV-RTAEYNG-SRDLEELYQFILKH  316 (324)
Q Consensus       281 ~i~~~P~l~~~~~g~-~~~~~~g-~~~~~~l~~fi~~~  316 (324)
                      +|+++||+++|++|. ....|.| .++.+.|.+||+..
T Consensus       419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            999999999998775 4557875 69999999999864

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.61  E-value=1e-14  Score=106.75  Aligned_cols=97  Identities=33%  Similarity=0.725  Sum_probs=78.6

Q ss_pred             CceEcChhhHHHHhcCC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccc--cchhhhhhCCccccce
Q psy14086         82 GLVELTEESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCT--QHRSICQSFDIKSYPT  156 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~--~~~~~~~~~~i~~~P~  156 (324)
                      .+.+++.++|++.+.+.  +++|.||++||++|+.+.|.|++++..+++. ..+.|+.+||+  .+..++++|+|+++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            57889999999998544  6899999999999999999999999988643 25899999986  4678999999999999


Q ss_pred             EEEEeCCeEe----eeecCC-CCHHHH
Q psy14086        157 LLWIESGKKL----DKFQGS-RTLETL  178 (324)
Q Consensus       157 ~~~~~~g~~~----~~~~g~-~~~~~i  178 (324)
                      +++|++|...    ..|.|. +..+.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            9999887532    234454 444444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PTZ00051 thioredoxin; Provisional

Probab=99.60  E-value=1.4e-14  Score=103.57  Aligned_cols=89  Identities=28%  Similarity=0.591  Sum_probs=77.3

Q ss_pred             ChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         87 TEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        87 ~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      +.++|.+.++. +++++.||++||++|+.+.+.|+++++.+.+   +.|+.+|++++..++++|+|.++|+++++++|+.
T Consensus         7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~   83 (98)
T PTZ00051          7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK---MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSV   83 (98)
T ss_pred             CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC---cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeE
Confidence            35677777754 4679999999999999999999999998764   9999999999999999999999999999999999


Q ss_pred             eeeecCCCCHHHHH
Q psy14086        166 LDKFQGSRTLETLV  179 (324)
Q Consensus       166 ~~~~~g~~~~~~i~  179 (324)
                      ..++.|. ..++|.
T Consensus        84 ~~~~~G~-~~~~~~   96 (98)
T PTZ00051         84 VDTLLGA-NDEALK   96 (98)
T ss_pred             EEEEeCC-CHHHhh
Confidence            8888886 555554

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.59  E-value=1.1e-14  Score=106.47  Aligned_cols=94  Identities=14%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             HHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEe--e
Q psy14086         91 FEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKL--D  167 (324)
Q Consensus        91 f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~--~  167 (324)
                      |.+.+ ....++|.||++||++|+.+.|.+++++..+ +  .+.|..+|.++++.++++|+|.++|+++++++|+..  .
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~   91 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGI   91 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceE
Confidence            43333 3335678889999999999999999999887 4  699999999999999999999999999999886433  2


Q ss_pred             eecCCCCHHHHHHHHHhhhC
Q psy14086        168 KFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       168 ~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++.|..+.+++.+||...+.
T Consensus        92 ~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          92 RYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EEEecCchHHHHHHHHHHHh
Confidence            68899999999999998764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.59  E-value=1e-14  Score=103.77  Aligned_cols=96  Identities=18%  Similarity=0.311  Sum_probs=76.8

Q ss_pred             hhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         89 ESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        89 ~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      +.|++.+   ..++++|.|+++||++|+.+.|.+.+++.++++  .+.|+.||+++.+++++.|+|+..|++++|.+|+.
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            4555555   356789999999999999999999999999975  59999999999999999999999999999999875


Q ss_pred             ee---------eecCC-CCHHHHHHHHHhhh
Q psy14086        166 LD---------KFQGS-RTLETLVNYVSKMK  186 (324)
Q Consensus       166 ~~---------~~~g~-~~~~~i~~fi~~~~  186 (324)
                      ..         +..+. .+.+++.+-++...
T Consensus        81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y  111 (114)
T cd02986          81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  111 (114)
T ss_pred             EEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence            43         12222 24566666665543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0908|consensus

Probab=99.59  E-value=7.3e-15  Score=116.23  Aligned_cols=103  Identities=25%  Similarity=0.569  Sum_probs=89.7

Q ss_pred             ceEcC-hhhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         83 LVELT-EESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        83 ~~~l~-~~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      |..++ +.+|+..+..   +.++|.|++.||+||+++.|.|..++.+|.+   ..|.+||+++....+..+||.++||++
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi   79 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI   79 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence            34443 4577777632   2578999999999999999999999999975   999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +|++|..+.+++|. ++..|++-+..++...
T Consensus        80 ff~ng~kid~~qGA-d~~gLe~kv~~~~sts  109 (288)
T KOG0908|consen   80 FFRNGVKIDQIQGA-DASGLEEKVAKYASTS  109 (288)
T ss_pred             EEecCeEeeeecCC-CHHHHHHHHHHHhccC
Confidence            99999999999988 7888999999887744

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.59  E-value=1.1e-14  Score=114.51  Aligned_cols=102  Identities=24%  Similarity=0.394  Sum_probs=85.4

Q ss_pred             CCCeeEecc-ccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        208 PEPVVSLTS-ENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       208 ~~~v~~l~~-~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      .+.+..++. ++|.+.+..    .+++|.||++||++|+.+.|.|.++|.+ +.   .+.|++||++.  . +++..|+|
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~-~~---~vkF~kVd~d~--~-~l~~~f~v  133 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAE-YP---AVKFCKIRASA--T-GASDEFDT  133 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHH-CC---CeEEEEEeccc--h-hhHHhCCC
Confidence            377899998 888888743    2799999999999999999999999966 33   59999999998  5 88999999


Q ss_pred             CccceEEEEecCeeeeeecC-------CCCHHHHHHHHHhh
Q psy14086        283 DGFPSIYVYKNGVRTAEYNG-------SRDLEELYQFILKH  316 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~~  316 (324)
                      .++||+++|++|+.+..+.|       ..+.+.|..||.++
T Consensus       134 ~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         134 DALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             CCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            99999999999987755543       36678888887653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.58  E-value=1.3e-14  Score=103.55  Aligned_cols=91  Identities=22%  Similarity=0.550  Sum_probs=76.1

Q ss_pred             cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086        217 ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       217 ~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      ++|++.+.   +++++|.||++||++|+.+.|.+++++.++ .  ..+.++.+|++.  .+++++.|+++++||+++|++
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~--~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~   77 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-F--PSVLFLSIEAEE--LPEISEKFEITAVPTFVFFRN   77 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh-C--CceEEEEEcccc--CHHHHHhcCCccccEEEEEEC
Confidence            34555553   257999999999999999999999999664 3  379999999998  899999999999999999999


Q ss_pred             CeeeeeecCCCCHHHHHHHH
Q psy14086        294 GVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       294 g~~~~~~~g~~~~~~l~~fi  313 (324)
                      |+.+..+.|. +.+.|.+.|
T Consensus        78 g~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          78 GTIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             CEEEEEEeCC-CHHHHHHhh
Confidence            9888777885 667777665

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.58  E-value=1.4e-14  Score=105.81  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeee--eecC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNG  302 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~--~~~g  302 (324)
                      ...++|.||++||++|+.+.|.+++++.. + .  .+.|..+|.+.  ++++.++|+|.++|++++|++|+...  .+.|
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~-~-~--~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G   95 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSEL-S-D--KLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDGGKDGGIRYYG   95 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHh-c-C--ceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCCeecceEEEEe
Confidence            34688899999999999999999999955 3 3  58999999998  89999999999999999999865432  6889


Q ss_pred             CCCHHHHHHHHHhhcc
Q psy14086        303 SRDLEELYQFILKHKV  318 (324)
Q Consensus       303 ~~~~~~l~~fi~~~~~  318 (324)
                      .....++.+||...+.
T Consensus        96 ~~~~~el~~~i~~i~~  111 (113)
T cd02975          96 LPAGYEFASLIEDIVR  111 (113)
T ss_pred             cCchHHHHHHHHHHHh
Confidence            8888999999988765

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.58  E-value=3.9e-14  Score=104.61  Aligned_cols=99  Identities=19%  Similarity=0.229  Sum_probs=80.3

Q ss_pred             CCceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------hhhhhh
Q psy14086         81 EGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------RSICQS  148 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------~~~~~~  148 (324)
                      .++..++.+.|.+.+.++ ..+|+|+++||++|+.+.|.|.+++++.    ++.|..+|.+.+           ..+.++
T Consensus         6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~   81 (122)
T TIGR01295         6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR   81 (122)
T ss_pred             ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence            367789999999988665 5699999999999999999999999983    356666776643           245566


Q ss_pred             CCc----cccceEEEEeCCeEeeeecC-CCCHHHHHHHHH
Q psy14086        149 FDI----KSYPTLLWIESGKKLDKFQG-SRTLETLVNYVS  183 (324)
Q Consensus       149 ~~i----~~~P~~~~~~~g~~~~~~~g-~~~~~~i~~fi~  183 (324)
                      |++    .++|++++|++|+.+.+..| ..+.++|.+|+.
T Consensus        82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence            654    45999999999999998988 467999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.57  E-value=2.5e-14  Score=103.31  Aligned_cols=87  Identities=23%  Similarity=0.297  Sum_probs=77.5

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc--ccceEEEEeC--CeEeeeecCC
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK--SYPTLLWIES--GKKLDKFQGS  172 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~--g~~~~~~~g~  172 (324)
                      +.++++.|+++||++|+.+.+.++++|+++++  ++.|+.+|++++..+++.|||.  ++|++++++.  |+.+....|.
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~   89 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE   89 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence            56889999999999999999999999999998  8999999999999999999999  9999999998  5554433345


Q ss_pred             CCHHHHHHHHHhh
Q psy14086        173 RTLETLVNYVSKM  185 (324)
Q Consensus       173 ~~~~~i~~fi~~~  185 (324)
                      .+.++|.+||.++
T Consensus        90 ~~~~~l~~fi~~~  102 (103)
T cd02982          90 LTAESLEEFVEDF  102 (103)
T ss_pred             cCHHHHHHHHHhh
Confidence            6999999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.57  E-value=9.4e-15  Score=105.63  Aligned_cols=93  Identities=23%  Similarity=0.380  Sum_probs=75.2

Q ss_pred             cccccc-CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCCCccceEEEEe
Q psy14086        219 FNDVIK-SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       219 ~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~P~l~~~~  292 (324)
                      |.+.+. +++++|.||++||++|+.+.+.+   .+++.. +..  ++.++.+|++...  ..+++++++++++|++++|+
T Consensus         4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~   80 (104)
T cd02953           4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAA-LKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG   80 (104)
T ss_pred             HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHH-HhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            444443 45899999999999999999888   567744 554  6999999987521  35788999999999999997


Q ss_pred             --cCeeeeeecCCCCHHHHHHHHH
Q psy14086        293 --NGVRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       293 --~g~~~~~~~g~~~~~~l~~fi~  314 (324)
                        +|+.+..+.|..+.+.|.++|+
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHhC
Confidence              6787888999999999998873

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.55  E-value=6.9e-14  Score=98.61  Aligned_cols=90  Identities=32%  Similarity=0.747  Sum_probs=80.3

Q ss_pred             hHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeee
Q psy14086         90 SFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK  168 (324)
Q Consensus        90 ~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~  168 (324)
                      +|.+.+.. ++++++||++||++|..+.+.+++++.. .+  ++.|+.+|++....+++.|++.++|+++++++|+....
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~   78 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR   78 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence            45555533 6789999999999999999999999998 33  79999999999999999999999999999999998888


Q ss_pred             ecCCCCHHHHHHHH
Q psy14086        169 FQGSRTLETLVNYV  182 (324)
Q Consensus       169 ~~g~~~~~~i~~fi  182 (324)
                      +.|..+.+.|.+||
T Consensus        79 ~~g~~~~~~l~~~i   92 (93)
T cd02947          79 VVGADPKEELEEFL   92 (93)
T ss_pred             EecCCCHHHHHHHh
Confidence            99999989999887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PTZ00051 thioredoxin; Provisional

Probab=99.55  E-value=4.6e-14  Score=100.86  Aligned_cols=93  Identities=32%  Similarity=0.644  Sum_probs=76.7

Q ss_pred             eeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      |..++. +.+.+.++. ++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +..++++|++.++|++
T Consensus         2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~-~~---~~~~~~vd~~~--~~~~~~~~~v~~~Pt~   75 (98)
T PTZ00051          2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKE-YT---KMVFVKVDVDE--LSEVAEKENITSMPTF   75 (98)
T ss_pred             eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHH-cC---CcEEEEEECcc--hHHHHHHCCCceeeEE
Confidence            344444 446676654 5799999999999999999999999964 32   48999999998  8899999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHH
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELY  310 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~  310 (324)
                      ++|++|+.+..+.|. ..++|.
T Consensus        76 ~~~~~g~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         76 KVFKNGSVVDTLLGA-NDEALK   96 (98)
T ss_pred             EEEeCCeEEEEEeCC-CHHHhh
Confidence            999999998888886 556654

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.55  E-value=4.5e-14  Score=104.29  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=77.7

Q ss_pred             CeeEeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc---------chhhhhh
Q psy14086        210 PVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL---------SKDLCNQ  279 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~---------~~~~~~~  279 (324)
                      .+..++.+.+.+.+.++ .++|+|+++||++|+.+.|.+.+++.+   .  ++.+..+|++...         ..++.+.
T Consensus         7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~   81 (122)
T TIGR01295         7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---T--KAPIYYIDSENNGSFEMSSLNDLTAFRSR   81 (122)
T ss_pred             cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---c--CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence            46667778888888765 689999999999999999999999954   2  4567777776410         1244566


Q ss_pred             cC----CCccceEEEEecCeeeeeecCC-CCHHHHHHHHH
Q psy14086        280 EG----VDGFPSIYVYKNGVRTAEYNGS-RDLEELYQFIL  314 (324)
Q Consensus       280 ~~----i~~~P~l~~~~~g~~~~~~~g~-~~~~~l~~fi~  314 (324)
                      ++    +.++||+++|++|+.+....|. .+.++|.+|+.
T Consensus        82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence            55    4569999999999998888884 57999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0908|consensus

Probab=99.54  E-value=3e-14  Score=112.83  Aligned_cols=102  Identities=30%  Similarity=0.642  Sum_probs=86.5

Q ss_pred             eeEecc-ccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        211 VVSLTS-ENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       211 v~~l~~-~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      |..+.+ +.|+..+..   +.++|.|++.||++|+...|+|+.++++| .   +..|.++|++.  ....+..+||...|
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p---~aVFlkVdVd~--c~~taa~~gV~amP   76 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-P---GAVFLKVDVDE--CRGTAATNGVNAMP   76 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-c---ccEEEEEeHHH--hhchhhhcCcccCc
Confidence            444544 447766642   47999999999999999999999999885 3   58999999999  88889999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      |+++|++|.++..+.|. +...|++-|.++...
T Consensus        77 TFiff~ng~kid~~qGA-d~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   77 TFIFFRNGVKIDQIQGA-DASGLEEKVAKYAST  108 (288)
T ss_pred             eEEEEecCeEeeeecCC-CHHHHHHHHHHHhcc
Confidence            99999999999999987 788898888887654

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.52  E-value=5.1e-12  Score=105.22  Aligned_cols=206  Identities=17%  Similarity=0.302  Sum_probs=135.3

Q ss_pred             CCCCCceEcChhhHHHHhcCCCE-EEEEeCCCCHhHhh-----HHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc
Q psy14086         78 IVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQS-----LAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI  151 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~~~~~~-~v~f~~~~c~~c~~-----~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i  151 (324)
                      .....+..||..||.+.+++..+ .|+|+.|--..-..     +...+-+|+.+.-....+.|+.||..++..+++++|+
T Consensus        31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            34567999999999999876655 57777766432211     2233556666665555799999999999999999999


Q ss_pred             cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc-c--cccccCCcE
Q psy14086        152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN-F--NDVIKSGTV  228 (324)
Q Consensus       152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~--~~~~~~~~~  228 (324)
                      ...+++++|+.|..+. |.|.++++.+++||.+.+.                     .+|..|+.+. +  .+-+++.+.
T Consensus       111 ~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~e---------------------dPVeiIn~~~e~~~Fe~ied~~k  168 (383)
T PF01216_consen  111 EEEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLLE---------------------DPVEIINNKHELKAFERIEDDIK  168 (383)
T ss_dssp             -STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHHS---------------------SSEEEE-SHHHHHHHHH--SS-E
T ss_pred             cccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhcc---------------------cchhhhcChhhhhhhhhccccee
Confidence            9999999999997765 9999999999999999998                     5688888766 2  233345677


Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC-eeeeeecC-CCCH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG-VRTAEYNG-SRDL  306 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g-~~~~~~~g-~~~~  306 (324)
                      +|-|+.+.-+   .....++++|.. |..  .+.|..+-     ++.++++++++ +-.+-+|..= .......| +.+.
T Consensus       169 lIGyFk~~~s---~~yk~FeeAAe~-F~p--~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e  236 (383)
T PF01216_consen  169 LIGYFKSEDS---EHYKEFEEAAEH-FQP--YIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE  236 (383)
T ss_dssp             EEEE-SSTTS---HHHHHHHHHHHH-CTT--TSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred             EEEEeCCCCc---HHHHHHHHHHHh-hcC--ceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence            7777665322   144567888844 655  57777654     68899999996 7788888642 33334444 4789


Q ss_pred             HHHHHHHHhhc
Q psy14086        307 EELYQFILKHK  317 (324)
Q Consensus       307 ~~l~~fi~~~~  317 (324)
                      +++.+||.++-
T Consensus       237 ~e~~~fi~~h~  247 (383)
T PF01216_consen  237 EELVEFIEEHK  247 (383)
T ss_dssp             HHHHHHHHHT-
T ss_pred             HHHHHHHHHhc
Confidence            99999999874

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.52  E-value=1.3e-13  Score=97.17  Aligned_cols=89  Identities=37%  Similarity=0.739  Sum_probs=77.7

Q ss_pred             ccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeee
Q psy14086        219 FNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       219 ~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      |.+.+.. ++++|.||++||+.|..+.+.+++++..    ..++.++.+|++.  +.++++.+++.++|++++|++|+..
T Consensus         3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~~~   76 (93)
T cd02947           3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGKEV   76 (93)
T ss_pred             hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCEEE
Confidence            4444444 6899999999999999999999999854    2369999999998  8999999999999999999999888


Q ss_pred             eeecCCCCHHHHHHHH
Q psy14086        298 AEYNGSRDLEELYQFI  313 (324)
Q Consensus       298 ~~~~g~~~~~~l~~fi  313 (324)
                      ..+.|..+.+.|.+||
T Consensus        77 ~~~~g~~~~~~l~~~i   92 (93)
T cd02947          77 DRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEecCCCHHHHHHHh
Confidence            8889988889999887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.52  E-value=6.7e-14  Score=99.56  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeee-----
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE-----  299 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~-----  299 (324)
                      +++++|.|+++||++|+.+.|.+.++|.++ ..  .+.|+.+|+++  .+++.+.|+|...||+++|++|+....     
T Consensus        14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~-~~--~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~gt~   88 (114)
T cd02986          14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDL-SK--MASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDYGSP   88 (114)
T ss_pred             CCEEEEEEeCCCChhHHHHHHHHHHHHHHc-cC--ceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEecCCC
Confidence            568999999999999999999999999764 32  38999999999  999999999999999999999875422     


Q ss_pred             ----ecCC-CCHHHHHHHHHh
Q psy14086        300 ----YNGS-RDLEELYQFILK  315 (324)
Q Consensus       300 ----~~g~-~~~~~l~~fi~~  315 (324)
                          ..+. .+.+++.+.++-
T Consensus        89 ~~~k~~~~~~~k~~~idi~e~  109 (114)
T cd02986          89 DHTKFVGSFKTKQDFIDLIEV  109 (114)
T ss_pred             CCcEEEEEcCchhHHHHHHHH
Confidence                2222 245777776653

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.51  E-value=2.3e-13  Score=108.33  Aligned_cols=99  Identities=24%  Similarity=0.322  Sum_probs=83.8

Q ss_pred             CCCceEcChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         80 NEGLVELTEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ...+..++.++|...+..    .+++|.||++||++|+.+.+.|+++|.+|..   +.|+++|++..   ...|+++.+|
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---vkFvkI~ad~~---~~~~~i~~lP  154 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---TKFVKIISTQC---IPNYPDKNLP  154 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---CEEEEEEhHHh---HhhCCCCCCC
Confidence            457889999999876632    2579999999999999999999999999864   99999998753   6889999999


Q ss_pred             eEEEEeCCeEeeeecC-------CCCHHHHHHHHHh
Q psy14086        156 TLLWIESGKKLDKFQG-------SRTLETLVNYVSK  184 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~  184 (324)
                      |+++|++|+.+.++.|       .++.++|..++.+
T Consensus       155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            9999999998877775       3678888877754

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.50  E-value=2.5e-13  Score=101.59  Aligned_cols=97  Identities=11%  Similarity=0.347  Sum_probs=79.8

Q ss_pred             hHHHHh-cC-CCEEEEEeCCCCHhHhhHHHHHH---HHHHhcCCCCCeEEEEeccccc-------------hhhhhhCCc
Q psy14086         90 SFEKYV-SL-GNHFVKFYAPWCGHCQSLAPVWQ---ELASHFKTEEDVSIAKIDCTQH-------------RSICQSFDI  151 (324)
Q Consensus        90 ~f~~~~-~~-~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i  151 (324)
                      .+.... ++ ++++|.||++||++|+.+.+.+.   .+...+.+  .+.++.+|.+..             ..++.+|+|
T Consensus         5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v   82 (125)
T cd02951           5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV   82 (125)
T ss_pred             HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence            344444 44 57899999999999999999885   56666655  688999988754             689999999


Q ss_pred             cccceEEEEeCC--eEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        152 KSYPTLLWIESG--KKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       152 ~~~P~~~~~~~g--~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +++|++++++++  +...++.|..+.+.+.++|+..+.+
T Consensus        83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            999999999874  7777899999999999999988763

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.50  E-value=1.5e-13  Score=99.15  Aligned_cols=87  Identities=15%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEec--Ceeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKN--GVRTAEY  300 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~--g~~~~~~  300 (324)
                      +.++++.|+++||++|+.+.|.++++|.+ +++  ++.|+++|++.  ++.+++.+++.  ++|++++++.  |+++...
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~-~~~--~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~   86 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKK-FKG--KLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP   86 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHH-hCC--eEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence            56899999999999999999999999966 554  69999999999  88999999999  9999999987  6665544


Q ss_pred             cCCCCHHHHHHHHHhh
Q psy14086        301 NGSRDLEELYQFILKH  316 (324)
Q Consensus       301 ~g~~~~~~l~~fi~~~  316 (324)
                      .|..+.+.|.+||.+.
T Consensus        87 ~~~~~~~~l~~fi~~~  102 (103)
T cd02982          87 EEELTAESLEEFVEDF  102 (103)
T ss_pred             ccccCHHHHHHHHHhh
Confidence            4556999999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.48  E-value=2.1e-13  Score=108.56  Aligned_cols=98  Identities=20%  Similarity=0.343  Sum_probs=81.2

Q ss_pred             CCeeEecccccccccc--C--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIK--S--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~--~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +.|..++..+|...+.  +  ..|+|.||++||++|+.+.|.|+++|.+ +.   .+.|+++|++.  .   ...|++.+
T Consensus        82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k-~~---~vkFvkI~ad~--~---~~~~~i~~  152 (192)
T cd02988          82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARK-FP---DTKFVKIISTQ--C---IPNYPDKN  152 (192)
T ss_pred             CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHH-CC---CCEEEEEEhHH--h---HhhCCCCC
Confidence            7899999999886553  2  2699999999999999999999999976 33   48999999765  2   47899999


Q ss_pred             cceEEEEecCeeeeeecC-------CCCHHHHHHHHHh
Q psy14086        285 FPSIYVYKNGVRTAEYNG-------SRDLEELYQFILK  315 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~  315 (324)
                      +||+++|++|+.+..+.|       ..+.+.|..+|.+
T Consensus       153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            999999999988776665       3677888887764

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG1731|consensus

Probab=99.48  E-value=1.9e-13  Score=120.70  Aligned_cols=220  Identities=20%  Similarity=0.369  Sum_probs=138.1

Q ss_pred             CCCCCceEcChhhHHHHhcCC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCC-CeEEEEeccc--cchhhhhhCCcc
Q psy14086         78 IVNEGLVELTEESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEE-DVSIAKIDCT--QHRSICQSFDIK  152 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~i~~~~vd~~--~~~~~~~~~~i~  152 (324)
                      .+.+++..|+.++|...+...  .++|.||++||++|++++|.|+++|+...... -+.++.|||.  ++..+|+.|+|+
T Consensus        36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~  115 (606)
T KOG1731|consen   36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS  115 (606)
T ss_pred             CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence            345789999999999988444  47999999999999999999999999987753 4789999997  678999999999


Q ss_pred             ccceEEEEeCCeEe----eeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccc----cccccc
Q psy14086        153 SYPTLLWIESGKKL----DKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN----FNDVIK  224 (324)
Q Consensus       153 ~~P~~~~~~~g~~~----~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~  224 (324)
                      ++|++.+|..+...    ..+.|.....+|.+.+.+.+...-..     ...+.   |  +..-.+.+.+    +.+.+.
T Consensus       116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~-----~~~~~---W--P~f~pl~~~~~~~~l~~~~~  185 (606)
T KOG1731|consen  116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQ-----NRYPS---W--PNFDPLKDTTTLEELDEGIS  185 (606)
T ss_pred             CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhh-----hcCCC---C--CCCCCCCCcchHHHHhcccc
Confidence            99999999775322    23556667888888888776533110     00001   1  1111222222    222222


Q ss_pred             CC--cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC
Q psy14086        225 SG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG  302 (324)
Q Consensus       225 ~~--~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g  302 (324)
                      +.  -+.|.|-..      ...--+..+-.. ... ..+.+..+-.++  +-.+.+ ++++..|...+|++|+....+..
T Consensus       186 ~~~~yvAiv~e~~------~s~lg~~~~l~~-l~~-~~v~vr~~~d~q--~~~~~~-l~~~~~~~~llfrnG~~q~l~~~  254 (606)
T KOG1731|consen  186 TTANYVAIVFETE------PSDLGWANLLND-LPS-KQVGVRARLDTQ--NFPLFG-LKPDNFPLALLFRNGEQQPLWPS  254 (606)
T ss_pred             cccceeEEEEecC------CcccHHHHHHhh-ccC-CCcceEEEecch--hccccc-cCCCCchhhhhhcCCcccccccc
Confidence            22  355555321      111223333322 221 123333333333  334445 88999999999999977544544


Q ss_pred             CCCHHHHHHHHHhhcc
Q psy14086        303 SRDLEELYQFILKHKV  318 (324)
Q Consensus       303 ~~~~~~l~~fi~~~~~  318 (324)
                      ..+.+...+-|.+.++
T Consensus       255 ~~s~~~y~~~I~~~lg  270 (606)
T KOG1731|consen  255 SSSRSAYVKKIDDLLG  270 (606)
T ss_pred             cccHHHHHHHHHHHhc
Confidence            4455455555555444

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.48  E-value=4.8e-13  Score=92.20  Aligned_cols=79  Identities=24%  Similarity=0.413  Sum_probs=71.0

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      +..|+++||++|+.+.+.+++++..++.  .+.+..+|.++++.+++++|++++|++++  +|+  .++.|..+.++|.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~   76 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVE   76 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHH
Confidence            6789999999999999999999999976  69999999999999999999999999986  564  36889999999999


Q ss_pred             HHHhh
Q psy14086        181 YVSKM  185 (324)
Q Consensus       181 fi~~~  185 (324)
                      ++...
T Consensus        77 ~l~~~   81 (82)
T TIGR00411        77 AIKKR   81 (82)
T ss_pred             HHHhh
Confidence            98765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.43  E-value=1e-12  Score=98.31  Aligned_cols=91  Identities=15%  Similarity=0.293  Sum_probs=73.4

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHH---HHHHHhhcCCCCeEEEEEecCCc-----------cchhhhhhcCCCccceEEEE
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWE---ELGTKLLDNKHGIVIAKVDCTQE-----------LSKDLCNQEGVDGFPSIYVY  291 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~---~~a~~~~~~~~~~~~~~id~~~~-----------~~~~~~~~~~i~~~P~l~~~  291 (324)
                      ++++|.||++||++|+.+.+.+.   .+. +.+..  ++.+..+|++..           ...++..+|+|.++|++++|
T Consensus        15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~   91 (125)
T cd02951          15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQ-AYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFL   91 (125)
T ss_pred             CcEEEEEeCCCCHHHHHHHHHhcCcHHHH-HHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEE
Confidence            58999999999999999999885   454 32333  588888988751           12678899999999999999


Q ss_pred             ec--CeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        292 KN--GVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       292 ~~--g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ..  |+.+..+.|..+.+.+.++|+..++.
T Consensus        92 ~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          92 DPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             cCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            75  57777889999999999999887654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.41  E-value=2e-11  Score=113.98  Aligned_cols=182  Identities=17%  Similarity=0.247  Sum_probs=142.8

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe-CCeE-eeeecCCCCHHH
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE-SGKK-LDKFQGSRTLET  177 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~~-~~~~~g~~~~~~  177 (324)
                      .++.|+.+.|..|..+...+++++.. .+  ++.+...|...+...+++|+++..|++.+++ +|+. -.+|.|-..-.+
T Consensus       369 ~l~~~~~~~~~~~~e~~~~l~e~~~~-s~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~E  445 (555)
T TIGR03143       369 TLLLFLDGSNEKSAELQSFLGEFASL-SE--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHE  445 (555)
T ss_pred             EEEEEECCCchhhHHHHHHHHHHHhc-CC--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHh
Confidence            57889899999999999999999954 33  7988888888889999999999999999996 4433 367999988899


Q ss_pred             HHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc-CCc-EEEEEeCCCChhhhhhhHhHHHHHHHhh
Q psy14086        178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK-SGT-VFIKFFAPWCGHCKRLAPTWEELGTKLL  255 (324)
Q Consensus       178 i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~  255 (324)
                      +..||...+.-.                   ..-..|+.+..+.+-. +++ .+-.|.+++|+.|......+++++.. .
T Consensus       446 f~s~i~~i~~~~-------------------~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~-~  505 (555)
T TIGR03143       446 LNSFILALYNAA-------------------GPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL-N  505 (555)
T ss_pred             HHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh-C
Confidence            999999887632                   1222334444333322 244 46677899999999999999999844 2


Q ss_pred             cCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        256 DNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       256 ~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                         +++..-.+|...  .+++.++|+|.++|++++  +|+.+  +.|..+.+++.+||
T Consensus       506 ---~~i~~~~i~~~~--~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~  554 (555)
T TIGR03143       506 ---PNVEAEMIDVSH--FPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI  554 (555)
T ss_pred             ---CCceEEEEECcc--cHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence               258888899998  899999999999999966  55543  67988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.40  E-value=3.5e-12  Score=87.88  Aligned_cols=80  Identities=23%  Similarity=0.385  Sum_probs=68.5

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE  307 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~  307 (324)
                      .+..|+++||++|+.+.|.+++++.+ +..  .+.+..+|.+.  ++++.+++++.++|++++  +|+.  .+.|..+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~   72 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKE-MGD--AVEVEYINVME--NPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKE   72 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHH-hcC--ceEEEEEeCcc--CHHHHHHcCCccCCEEEE--CCEE--EEecCCCHH
Confidence            46789999999999999999999955 443  58899999988  889999999999999976  6653  678988999


Q ss_pred             HHHHHHHhh
Q psy14086        308 ELYQFILKH  316 (324)
Q Consensus       308 ~l~~fi~~~  316 (324)
                      .+.++|.+.
T Consensus        73 ~l~~~l~~~   81 (82)
T TIGR00411        73 ELVEAIKKR   81 (82)
T ss_pred             HHHHHHHhh
Confidence            999998765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.37  E-value=3.5e-12  Score=92.86  Aligned_cols=91  Identities=21%  Similarity=0.344  Sum_probs=72.0

Q ss_pred             ChhhHHHHhc---CCCEEEEEeC-------CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------chhhhhhC
Q psy14086         87 TEESFEKYVS---LGNHFVKFYA-------PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------HRSICQSF  149 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------~~~~~~~~  149 (324)
                      +.++|.+.+.   +++++|.||+       +||++|+.+.|.+++++.++.+  ++.|+.||++.       +..+...+
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence            3456666664   4578999999       9999999999999999999986  69999999975       45899999


Q ss_pred             Ccc-ccceEEEEeCCeEeeeecCC--CCHHHHHHHH
Q psy14086        150 DIK-SYPTLLWIESGKKLDKFQGS--RTLETLVNYV  182 (324)
Q Consensus       150 ~i~-~~P~~~~~~~g~~~~~~~g~--~~~~~i~~fi  182 (324)
                      +|. ++||+++|+.|+.+   .|.  .+.+.+..|+
T Consensus        86 ~I~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~  118 (119)
T cd02952          86 KLTTGVPTLLRWKTPQRL---VEDECLQADLVEMFF  118 (119)
T ss_pred             CcccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence            998 99999999877543   332  3555555543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.36  E-value=3.7e-12  Score=92.74  Aligned_cols=94  Identities=20%  Similarity=0.401  Sum_probs=71.0

Q ss_pred             ccccccccc---CCcEEEEEeC-------CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----cchhhhhhc
Q psy14086        216 SENFNDVIK---SGTVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----LSKDLCNQE  280 (324)
Q Consensus       216 ~~~~~~~~~---~~~~~v~f~~-------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~  280 (324)
                      .++|.+.+.   +++++|.||+       +||++|+.+.|.+++++.+ +..  ++.|+.+|++..     .+.++...+
T Consensus         9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~-~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKA-APE--DCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHH-CCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence            345666664   3589999999       9999999999999999955 443  589999998751     146888999


Q ss_pred             CCC-ccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        281 GVD-GFPSIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       281 ~i~-~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      +|. ++||+++|+.|+++...+ =.+.+.+..|+
T Consensus        86 ~I~~~iPT~~~~~~~~~l~~~~-c~~~~~~~~~~  118 (119)
T cd02952          86 KLTTGVPTLLRWKTPQRLVEDE-CLQADLVEMFF  118 (119)
T ss_pred             CcccCCCEEEEEcCCceecchh-hcCHHHHHHhh
Confidence            998 999999998876653222 14566666554

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00062 glutaredoxin; Provisional

Probab=99.34  E-value=6.8e-12  Score=100.19  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             ccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086        216 SENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       216 ~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      .+.+.+.+.  .+.++++|+++||++|+.+.|.+.+++.+ +.   .+.|+.+|++          ++|.++|++++|++
T Consensus         6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~-~~---~~~F~~V~~d----------~~V~~vPtfv~~~~   71 (204)
T PTZ00062          6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVED-FP---SLEFYVVNLA----------DANNEYGVFEFYQN   71 (204)
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-CC---CcEEEEEccc----------cCcccceEEEEEEC
Confidence            345666666  46799999999999999999999999966 43   5999999844          89999999999999


Q ss_pred             CeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        294 GVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       294 g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+.+.++.|. +...|..++.++.+
T Consensus        72 g~~i~r~~G~-~~~~~~~~~~~~~~   95 (204)
T PTZ00062         72 SQLINSLEGC-NTSTLVSFIRGWAQ   95 (204)
T ss_pred             CEEEeeeeCC-CHHHHHHHHHHHcC
Confidence            9999899986 67888888877644

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.30  E-value=6.6e-11  Score=110.56  Aligned_cols=159  Identities=19%  Similarity=0.256  Sum_probs=128.4

Q ss_pred             CCCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceE
Q psy14086          6 EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVE   85 (324)
Q Consensus         6 ~~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (324)
                      -+++|.+...|..++++++++|+|...|++.+++.++....++|.|....++|.+|+...+..           ...-..
T Consensus       394 ~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~-----------~~~~~~  462 (555)
T TIGR03143       394 LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNA-----------AGPGQP  462 (555)
T ss_pred             cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHh-----------cCCCCC
Confidence            357899999999999999999999999999999644424468999999999998888876643           113445


Q ss_pred             cChhhHHHHhc-CCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         86 LTEESFEKYVS-LGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        86 l~~~~f~~~~~-~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      |+++..+.+.. +++ .+-.|.+++|++|.+....+++++....   ++..-.+|...+++++++|+|.++|++++  +|
T Consensus       463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~  537 (555)
T TIGR03143       463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DD  537 (555)
T ss_pred             CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE--CC
Confidence            66666555542 344 4677899999999999999999999865   49999999999999999999999999987  45


Q ss_pred             eEeeeecCCCCHHHHHHHH
Q psy14086        164 KKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       164 ~~~~~~~g~~~~~~i~~fi  182 (324)
                      +..  +.|..+.++|.+||
T Consensus       538 ~~~--~~G~~~~~~~~~~~  554 (555)
T TIGR03143       538 QQV--YFGKKTIEEMLELI  554 (555)
T ss_pred             EEE--EeeCCCHHHHHHhh
Confidence            433  77988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.27  E-value=1.3e-10  Score=85.53  Aligned_cols=106  Identities=16%  Similarity=0.231  Sum_probs=90.5

Q ss_pred             ceEcChhhHHHHhcCCCEEEEEeCCC---CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         83 LVELTEESFEKYVSLGNHFVKFYAPW---CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~~~~~v~f~~~~---c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ...++..+++.++......|.|.+..   ++.+....-.+.+++++|.+ .++.|++||+++++.++.+|||.++||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl~   97 (132)
T PRK11509         19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_pred             CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            45566678888886666566666533   67778888899999999974 259999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      |++|+.+.+..|..+.+++.+||.+++...
T Consensus        98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            999999999999999999999999998843

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.25  E-value=6e-11  Score=79.99  Aligned_cols=72  Identities=14%  Similarity=0.293  Sum_probs=60.0

Q ss_pred             EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCC-CCHHHHHH
Q psy14086        102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS-RTLETLVN  180 (324)
Q Consensus       102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-~~~~~i~~  180 (324)
                      |.||++||++|+.+.|.++++++++..  .+.|..+|   +.+.+.++|+.++|++++  +|+..  +.|. .+.+.|.+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~   73 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKE   73 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHH
Confidence            789999999999999999999999976  78998887   234578899999999998  77655  6775 45678877


Q ss_pred             HH
Q psy14086        181 YV  182 (324)
Q Consensus       181 fi  182 (324)
                      ++
T Consensus        74 ~l   75 (76)
T TIGR00412        74 IL   75 (76)
T ss_pred             Hh
Confidence            75

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PHA02125 thioredoxin-like protein

Probab=99.24  E-value=8.6e-11  Score=79.11  Aligned_cols=70  Identities=26%  Similarity=0.570  Sum_probs=57.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCC-CCHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS-RTLETLV  179 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-~~~~~i~  179 (324)
                      +++|+++||++|+.+.|.|+++.        +.++.+|++++.+++++|+|.++|+++   .|+...++.|. .+..+|.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~   70 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELK   70 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHH
Confidence            68999999999999999997653        468899999999999999999999987   56666678885 4445555


Q ss_pred             HH
Q psy14086        180 NY  181 (324)
Q Consensus       180 ~f  181 (324)
                      +-
T Consensus        71 ~~   72 (75)
T PHA02125         71 EK   72 (75)
T ss_pred             HH
Confidence            43

>PHA02125 thioredoxin-like protein

Probab=99.24  E-value=7.4e-11  Score=79.42  Aligned_cols=69  Identities=23%  Similarity=0.527  Sum_probs=55.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCC-CCHH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-RDLE  307 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~-~~~~  307 (324)
                      ++.||++||++|+.+.|.+++++         +.++.+|.+.  +.+++++|+|.++||++   +|+.+..+.|. .+..
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~--~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~   67 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE--GVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVA   67 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC--CHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHH
Confidence            68999999999999999987653         3578888888  88999999999999997   67666677785 3445


Q ss_pred             HHHH
Q psy14086        308 ELYQ  311 (324)
Q Consensus       308 ~l~~  311 (324)
                      +|.+
T Consensus        68 ~l~~   71 (75)
T PHA02125         68 ELKE   71 (75)
T ss_pred             HHHH
Confidence            5544

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.23  E-value=3.9e-11  Score=87.89  Aligned_cols=84  Identities=21%  Similarity=0.471  Sum_probs=62.5

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHH---HHHhcCCCCCeEEEEeccccc--------------------hhhhhhCCccc
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQE---LASHFKTEEDVSIAKIDCTQH--------------------RSICQSFDIKS  153 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~---la~~~~~~~~i~~~~vd~~~~--------------------~~~~~~~~i~~  153 (324)
                      +++.+++|+++||++|+.+.+.+..   +...++.  ++.++.+++...                    ..+++.+||++
T Consensus         5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            4567999999999999999998885   5555554  577777776532                    35889999999


Q ss_pred             cceEEEEe-CCeEeeeecCCCCHHHHHHHH
Q psy14086        154 YPTLLWIE-SGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       154 ~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      +|++++++ +|+.+.++.|..+.++|.+++
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999997 488787899999999998875

...

>KOG1731|consensus

Probab=99.22  E-value=8.3e-12  Score=110.55  Aligned_cols=111  Identities=23%  Similarity=0.617  Sum_probs=90.3

Q ss_pred             CCCeeEeccccccccccCC--cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~~--~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ..+|..|+..+|...+.+.  -.+|.||+.|||+|+++.|.|+++|.+...=..-+.++.|||....|..+|..|+|+++
T Consensus        38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~  117 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY  117 (606)
T ss_pred             CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence            3789999999999988664  58999999999999999999999997755444458999999988779999999999999


Q ss_pred             ceEEEEecCeee----eeecCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKNGVRT----AEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~g~~~----~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+|.+|+.+-..    ..+.|.....++.+.+.+.+.
T Consensus       118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la  154 (606)
T KOG1731|consen  118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA  154 (606)
T ss_pred             ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence            999999654221    245566667777777766543

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.21  E-value=3e-10  Score=87.02  Aligned_cols=87  Identities=21%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------chhhh-hhC---CccccceEEEEeC
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------HRSIC-QSF---DIKSYPTLLWIES  162 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------~~~~~-~~~---~i~~~P~~~~~~~  162 (324)
                      .+..+|.||++||++|++..|.+++++++++-  .+..+.+|...          ..... ..+   ++.++|+.++++.
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            44569999999999999999999999999843  44444454321          12222 345   7889999999976


Q ss_pred             -CeE-eeeecCCCCHHHHHHHHHhh
Q psy14086        163 -GKK-LDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       163 -g~~-~~~~~g~~~~~~i~~fi~~~  185 (324)
                       |+. ..++.|..+.+++.+.|.+.
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHh
Confidence             453 44688999999999888765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.21  E-value=3.7e-11  Score=88.19  Aligned_cols=96  Identities=15%  Similarity=0.333  Sum_probs=65.5

Q ss_pred             hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-hhhhhCCccc--cceEEEEe-CC
Q psy14086         89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-SICQSFDIKS--YPTLLWIE-SG  163 (324)
Q Consensus        89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~--~P~~~~~~-~g  163 (324)
                      +.+.... ++++++|.||++||++|+.+.|.+.+.+.....  ...|+.+|.+.+. ...+.|++.+  +|++++++ +|
T Consensus        10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G   87 (117)
T cd02959          10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSG   87 (117)
T ss_pred             HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCC
Confidence            3444333 456899999999999999999999998776543  3445555555443 4567888876  99999997 57


Q ss_pred             eEee---eecCCCCHHHHHHHHHhhh
Q psy14086        164 KKLD---KFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       164 ~~~~---~~~g~~~~~~i~~fi~~~~  186 (324)
                      +...   ...|..+.+.+..++....
T Consensus        88 k~~~~~~~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          88 DVHPEIINKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             CCchhhccCCCCccccccCCCHHHHH
Confidence            6654   3345555555555554443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.20  E-value=2.4e-10  Score=84.06  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=84.9

Q ss_pred             eeEeccccccccccCCcEEEEEeCCC---ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        211 VVSLTSENFNDVIKSGTVFIKFFAPW---CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       211 v~~l~~~~~~~~~~~~~~~v~f~~~~---c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      ...++..+++.++......|.|.+..   ++.+....-++.+++.+ +.. .++.++++|++.  +++++.+|||.++||
T Consensus        19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e-~~~-~~v~~akVDiD~--~~~LA~~fgV~siPT   94 (132)
T PRK11509         19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE-FPD-YTWQVAIADLEQ--SEAIGDRFGVFRFPA   94 (132)
T ss_pred             CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHH-hcC-CceEEEEEECCC--CHHHHHHcCCccCCE
Confidence            44455678888887665444454432   45666788899999966 442 259999999999  999999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +++|++|+.+....|..+.+.+.+||.+.+..
T Consensus        95 Ll~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             EEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999988764

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.18  E-value=4.7e-11  Score=87.61  Aligned_cols=89  Identities=18%  Similarity=0.357  Sum_probs=61.5

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc--cceEEEEe-cCeeee---
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG--FPSIYVYK-NGVRTA---  298 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~P~l~~~~-~g~~~~---  298 (324)
                      +++++|.||++||++|+.+.|.+.+.+.. ...  ...|+.++.+.. .....+.+++.+  +|++++|. +|+...   
T Consensus        19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~-~~~--~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~   94 (117)
T cd02959          19 GKPLMLLIHKTWCGACKALKPKFAESKEI-SEL--SHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPSGDVHPEII   94 (117)
T ss_pred             CCcEEEEEeCCcCHHHHHHHHHHhhhHHH-Hhh--cCcEEEEEecCC-CCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence            46899999999999999999999987743 222  234555565551 123456788876  99999995 787643   


Q ss_pred             eecCCCCHHHHHHHHHhhc
Q psy14086        299 EYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       299 ~~~g~~~~~~l~~fi~~~~  317 (324)
                      ...|..+.+.+.++|....
T Consensus        95 ~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          95 NKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             cCCCCccccccCCCHHHHH
Confidence            3446566666666555443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02740 TraF-like TraF-like protein

Probab=99.18  E-value=3.2e-10  Score=95.50  Aligned_cols=90  Identities=16%  Similarity=0.290  Sum_probs=72.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------chhhhhhCCccccceEEEEeC-CeE
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------HRSICQSFDIKSYPTLLWIES-GKK  165 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~-g~~  165 (324)
                      .++..+|.||++||++|+.+.|.+++++++++-  .+..+.+|...         +..++++|||+++|+++++++ |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            456789999999999999999999999999853  45555555432         356889999999999999987 544


Q ss_pred             e-eeecCCCCHHHHHHHHHhhhC
Q psy14086        166 L-DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       166 ~-~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      + ....|..+.++|.+.|.....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhc
Confidence            4 345689999999999987765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.18  E-value=1.5e-10  Score=78.05  Aligned_cols=72  Identities=19%  Similarity=0.328  Sum_probs=56.7

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCC-CCHHH
Q psy14086        230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-RDLEE  308 (324)
Q Consensus       230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~-~~~~~  308 (324)
                      |.||++||++|+.+.|.+++++.+ +..  .+.+..+|  .   .+.+.++++.++|++++  +|+.+  +.|. .+.+.
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e-~~~--~~~~~~v~--~---~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~   70 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEE-LGI--DAEFEKVT--D---MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEE   70 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHH-cCC--CeEEEEeC--C---HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHH
Confidence            789999999999999999999965 433  57787777  2   33467899999999988  77665  6775 35578


Q ss_pred             HHHHH
Q psy14086        309 LYQFI  313 (324)
Q Consensus       309 l~~fi  313 (324)
                      +.+++
T Consensus        71 l~~~l   75 (76)
T TIGR00412        71 IKEIL   75 (76)
T ss_pred             HHHHh
Confidence            87776

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.17  E-value=2.2e-10  Score=103.84  Aligned_cols=89  Identities=20%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEe----------------------------ccccchhhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI----------------------------DCTQHRSICQ  147 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~v----------------------------d~~~~~~~~~  147 (324)
                      ..++++|.||++||++|+..+|.+++++++++.+ ++.|+.|                            +++.+..+++
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak  133 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ  133 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence            4567899999999999999999999999998732 3555443                            2344567889


Q ss_pred             hCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        148 SFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       148 ~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      .|+|+++|+++++. +|+.+.++.|..+.++|.++|+..
T Consensus       134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            99999999997775 588888899999999999999943

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.15  E-value=4e-10  Score=102.15  Aligned_cols=88  Identities=20%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec----------------------------CCccchh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC----------------------------TQELSKD  275 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~----------------------------~~~~~~~  275 (324)
                      .+++++|.||++||++|+...|.+++++.++...  ++.++.|..                            +.  +..
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~  130 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGT  130 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHH
Confidence            4568999999999999999999999999653222  355544432                            22  456


Q ss_pred             hhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        276 LCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       276 ~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +.+.|+|.++|+++++ ++|+.+..+.|..+.++|.++|+.
T Consensus       131 lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        131 LAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            7889999999999766 689888899999999999999984

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.13  E-value=4.2e-10  Score=104.80  Aligned_cols=100  Identities=14%  Similarity=0.388  Sum_probs=79.4

Q ss_pred             ceEc-ChhhHHHHh-----cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc----chhhhhhC
Q psy14086         83 LVEL-TEESFEKYV-----SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ----HRSICQSF  149 (324)
Q Consensus        83 ~~~l-~~~~f~~~~-----~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~----~~~~~~~~  149 (324)
                      ...+ +.+++++.+     ++++++|+||++||++|+.+.+..   .++.+.++   ++.++++|+++    +..++++|
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~  530 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHY  530 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHc
Confidence            3444 355666554     246899999999999999998865   66777775   48899999874    36899999


Q ss_pred             CccccceEEEEe-CCeE--eeeecCCCCHHHHHHHHHhh
Q psy14086        150 DIKSYPTLLWIE-SGKK--LDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       150 ~i~~~P~~~~~~-~g~~--~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++.++|++++|+ +|+.  ..++.|..+.+++.+++++.
T Consensus       531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            999999999997 4665  35788999999999999874

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.13  E-value=7.4e-10  Score=84.88  Aligned_cols=87  Identities=13%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------chhhh-hhc---CCCccceEEE
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------SKDLC-NQE---GVDGFPSIYV  290 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------~~~~~-~~~---~i~~~P~l~~  290 (324)
                      ++..+|.||++||++|+...|.++++++++ .    +.+..++.+...          ..... ..+   ++.++|+.++
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-G----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHc-C----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            455799999999999999999999999653 2    344444443310          12222 334   7889999999


Q ss_pred             Ee-cCee-eeeecCCCCHHHHHHHHHhh
Q psy14086        291 YK-NGVR-TAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       291 ~~-~g~~-~~~~~g~~~~~~l~~fi~~~  316 (324)
                      +. +|+. +..+.|..+.+++.+.|.+.
T Consensus       125 ID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       125 VNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             EeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence            95 5554 44678999999998888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.12  E-value=1.7e-10  Score=84.51  Aligned_cols=87  Identities=24%  Similarity=0.463  Sum_probs=62.1

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHH--HhhcCCCCeEEEEEecCCcc------------------chhhhhhcCCCc
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGT--KLLDNKHGIVIAKVDCTQEL------------------SKDLCNQEGVDG  284 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~--~~~~~~~~~~~~~id~~~~~------------------~~~~~~~~~i~~  284 (324)
                      +++.+++|+++||++|+.+.+.+.....  ...+.  ++.+..+++....                  ..++...++|++
T Consensus         5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            4679999999999999999888875431  22332  4777777776511                  245888999999


Q ss_pred             cceEEEEe-cCeeeeeecCCCCHHHHHHHH
Q psy14086        285 FPSIYVYK-NGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       285 ~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      +|+++++. +|+.+..+.|..+.++|.++|
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999995 788887889999999998875

...

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.10  E-value=1.8e-09  Score=85.52  Aligned_cols=106  Identities=22%  Similarity=0.445  Sum_probs=79.9

Q ss_pred             CCeeEeccccccc-cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc----------------
Q psy14086        209 EPVVSLTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----------------  271 (324)
Q Consensus       209 ~~v~~l~~~~~~~-~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~----------------  271 (324)
                      -.+..++++.+.- ...+++++|.||++||++|+...+.+.+++.++...  ++.++.++++..                
T Consensus        44 ~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~  121 (173)
T PRK03147         44 FVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFP  121 (173)
T ss_pred             cEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence            3455566655431 124568999999999999999999999999664333  477777776531                


Q ss_pred             ----cchhhhhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        272 ----LSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       272 ----~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                          .+..+.+.|++.++|+++++. +|+.+..+.|..+.+++.+++.+.
T Consensus       122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             EEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence                145778899999999998885 677777889999999999998754

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.10  E-value=8.6e-10  Score=76.50  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      .+..-+..|+++||++|....+.+++++..+.   ++.+..+|.+..+.++++|||.++|++++  +|+..  +.|..+.
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~--~~G~~~~   83 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF--GFGRMTL   83 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE--EeCCCCH
Confidence            34445889999999999999999999998875   59999999999999999999999999975  66654  4687676


Q ss_pred             HHHH
Q psy14086        176 ETLV  179 (324)
Q Consensus       176 ~~i~  179 (324)
                      +++.
T Consensus        84 ~e~~   87 (89)
T cd03026          84 EEIL   87 (89)
T ss_pred             HHHh
Confidence            6654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.09  E-value=1.4e-09  Score=86.28  Aligned_cols=102  Identities=25%  Similarity=0.539  Sum_probs=79.3

Q ss_pred             ceEcChhhHHHH-hcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------
Q psy14086         83 LVELTEESFEKY-VSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------  140 (324)
Q Consensus        83 ~~~l~~~~f~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------  140 (324)
                      +..++.+.+.-. ..+++++|.||++||++|+...+.+.++++++.+. ++.++.++++                     
T Consensus        46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~  124 (173)
T PRK03147         46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVAI  124 (173)
T ss_pred             eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence            444444433221 24567899999999999999999999999999752 4777777764                     


Q ss_pred             -cchhhhhhCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086        141 -QHRSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       141 -~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                       .+..+++.|++..+|+++++++ |+....+.|..+.+++.+++.+.
T Consensus       125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence             2357789999999999999975 77777789999999999998764

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.08  E-value=1.6e-09  Score=86.59  Aligned_cols=88  Identities=10%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+..+|.+.+++++     .+.++.|+.+.+                       ..+...||+.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~  141 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY  141 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence            456789999999999999999999998753     366666664322                       1244578999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ++|+.++++ +|+...++.|..+.+++.++|+..+..
T Consensus       142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence            999888886 588788889999999999999988763

>TIGR02740 TraF-like TraF-like protein

Probab=99.07  E-value=1.5e-09  Score=91.45  Aligned_cols=90  Identities=18%  Similarity=0.240  Sum_probs=69.1

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------cchhhhhhcCCCccceEEEEec-
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------LSKDLCNQEGVDGFPSIYVYKN-  293 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~i~~~P~l~~~~~-  293 (324)
                      .++.++|+||++||++|+.+.|.+++++.++     ++.+..|+.+..         .+..+.+.++|.++|+++++.. 
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-----g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~  239 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-----GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD  239 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHc-----CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence            3568999999999999999999999999663     244444454431         1246788999999999999975 


Q ss_pred             Ceee-eeecCCCCHHHHHHHHHhhcc
Q psy14086        294 GVRT-AEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       294 g~~~-~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+.+ ....|..+.++|.+.|.....
T Consensus       240 ~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       240 PNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            5544 345688999999999987654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.07  E-value=1.8e-09  Score=85.39  Aligned_cols=89  Identities=26%  Similarity=0.414  Sum_probs=68.3

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------ccchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------ELSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------~~~~~~~~~~~i  282 (324)
                      .+++++|.||++||++|+...|.+++++.+      ++.+..++.+.                     +....+...|++
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            457899999999999999999999988742      24444444321                     013356677899


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .++|+.+++ ++|+.+..+.|..+.+++.++|.+.+.
T Consensus       136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            999976666 688888888999999999999998764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.06  E-value=1.6e-09  Score=86.65  Aligned_cols=89  Identities=19%  Similarity=0.315  Sum_probs=68.4

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~i  282 (324)
                      .+++++|.||++||++|+...|.+.++..+      ++.+..++.++.                     ....+...|++
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  140 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  140 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence            456899999999999999999999988632      355666664331                     01134457899


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .++|+.+++ ++|+....+.|..+.+.+.++|...++
T Consensus       141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            999977777 588888889999999999999887765

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.06  E-value=1.8e-09  Score=79.53  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             ChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHH-H--HHHHHhcCCCCCeEEEEeccccchhhhh--------hCCcccc
Q psy14086         87 TEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPV-W--QELASHFKTEEDVSIAKIDCTQHRSICQ--------SFDIKSY  154 (324)
Q Consensus        87 ~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~i~~~~vd~~~~~~~~~--------~~~i~~~  154 (324)
                      +++.+.... ++++++|.|+++||++|+.+.+. |  .+++..+..  .+.++.+|.++.+++.+        .||+.++
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            456666665 45678999999999999999763 3  356666654  69999999988777655        3589999


Q ss_pred             ceEEEEeC-CeEeeeecC-----CCCHHHHHHHHHh
Q psy14086        155 PTLLWIES-GKKLDKFQG-----SRTLETLVNYVSK  184 (324)
Q Consensus       155 P~~~~~~~-g~~~~~~~g-----~~~~~~i~~fi~~  184 (324)
                      |+++++.+ |+.+....+     ..+...+..+++.
T Consensus        82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (124)
T cd02955          82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK  117 (124)
T ss_pred             CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence            99999977 665532221     1334455555554

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.05  E-value=1.1e-09  Score=82.90  Aligned_cols=71  Identities=17%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC------CCeEEEEeccccc-------------------------hh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE------EDVSIAKIDCTQH-------------------------RS  144 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~------~~i~~~~vd~~~~-------------------------~~  144 (324)
                      +.++++|+|||+||++|+..+|.+.+++++++++      .++.++.|+.+..                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            4668899999999999999999999998877542      2477777765532                         24


Q ss_pred             hhhhCCccccceEEEEeCCeEe
Q psy14086        145 ICQSFDIKSYPTLLWIESGKKL  166 (324)
Q Consensus       145 ~~~~~~i~~~P~~~~~~~g~~~  166 (324)
                      +++.|++.++|++++++....+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~V  125 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDV  125 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcE
Confidence            6778899999999999874333

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.05  E-value=6.1e-10  Score=73.30  Aligned_cols=56  Identities=18%  Similarity=0.386  Sum_probs=50.9

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ++.|+++||++|+.+.+.+++++....   ++.|..+|.++++.+++++|+.++|++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            678999999999999999999987653   59999999999999999999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.05  E-value=1.8e-09  Score=80.94  Aligned_cols=79  Identities=23%  Similarity=0.358  Sum_probs=62.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec-----------------------cccchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID-----------------------CTQHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd-----------------------~~~~~~~~~~~~i~  152 (324)
                      ..++++|+||++||++|+...|.++++++.++    +.++.|+                       ++....+++.|++.
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~   99 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY   99 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence            35578999999999999999999999988762    4444444                       23445678889999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHH
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETL  178 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i  178 (324)
                      ++|+.++++ +|+...++.|..+.+.|
T Consensus       100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         100 GVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCCeEEEECCCceEEEEEeccCChHhc
Confidence            999777775 58878888998887654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.04  E-value=1.7e-09  Score=76.58  Aligned_cols=66  Identities=23%  Similarity=0.571  Sum_probs=53.3

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-------------------------hhhhhhCCcc
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-------------------------RSICQSFDIK  152 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-------------------------~~~~~~~~i~  152 (324)
                      ++++++||++||++|+...|.+.++.++++.+.++.|+.|..++.                         ..+.+.|+|.
T Consensus         2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~   81 (95)
T PF13905_consen    2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN   81 (95)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence            467999999999999999999999999999334788888777643                         4577788999


Q ss_pred             ccceEEEEeCC
Q psy14086        153 SYPTLLWIESG  163 (324)
Q Consensus       153 ~~P~~~~~~~g  163 (324)
                      ++|++++++++
T Consensus        82 ~iP~~~lld~~   92 (95)
T PF13905_consen   82 GIPTLVLLDPD   92 (95)
T ss_dssp             SSSEEEEEETT
T ss_pred             cCCEEEEECCC
Confidence            99999999874

...

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.04  E-value=2.1e-09  Score=84.96  Aligned_cols=87  Identities=17%  Similarity=0.326  Sum_probs=68.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-----------------------ccchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-----------------------TQHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~  152 (324)
                      .+++++|+||++||++|+...|.++++++.     ++.++.|+.                       +....+.+.|++.
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~  136 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY  136 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence            456789999999999999999999998764     244444443                       2234566788999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|+.++++ +|+...++.|..+.+++.+++.+++.
T Consensus       137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            999877775 58777788899999999999998764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.03  E-value=2e-09  Score=80.13  Aligned_cols=81  Identities=20%  Similarity=0.343  Sum_probs=64.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------ccchhhhhhCCcccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------TQHRSICQSFDIKSY  154 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------~~~~~~~~~~~i~~~  154 (324)
                      ..+++++.||++||++|..+.|.+.++++.+.    +..+.+|.                     +.+..+++.|+|.++
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~   94 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT   94 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence            34578999999999999999999999988742    33333321                     244679999999999


Q ss_pred             ceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        155 PTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       155 P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      |+++++++++...++.|..+.+.|.+
T Consensus        95 P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          95 PAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            99999988666667889899988865

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.03  E-value=1.3e-09  Score=101.66  Aligned_cols=88  Identities=22%  Similarity=0.406  Sum_probs=70.9

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEe-cCee--
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYK-NGVR--  296 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~-~g~~--  296 (324)
                      +++++|+||++||++|+.+.+..   .++.+. ++   ++.++.+|+++.  ++.++.++|++.++|++++|+ +|+.  
T Consensus       474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~-l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~  549 (571)
T PRK00293        474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQA-LA---DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP  549 (571)
T ss_pred             CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHH-hc---CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence            36899999999999999988764   455533 33   488999998762  245788999999999999996 6776  


Q ss_pred             eeeecCCCCHHHHHHHHHhh
Q psy14086        297 TAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       297 ~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ..++.|..+.+++.+++++.
T Consensus       550 ~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        550 DARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             cccccCCCCHHHHHHHHHHh
Confidence            35778999999999999875

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.03  E-value=3.2e-08  Score=92.00  Aligned_cols=177  Identities=14%  Similarity=0.156  Sum_probs=128.7

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCCH
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRTL  175 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~  175 (324)
                      ++++-+.++...|..|..+...+++++..-.   ++.+...+..           ...|++.+..+|+. -.+|.|-..-
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g   83 (517)
T PRK15317         18 ERPIELVASLDDSEKSAELKELLEEIASLSD---KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG   83 (517)
T ss_pred             CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence            3455344444489999999999999887643   5766442211           34799988876543 3679999899


Q ss_pred             HHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccc--ccCCcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086        176 ETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDV--IKSGTVFIKFFAPWCGHCKRLAPTWEELGTK  253 (324)
Q Consensus       176 ~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~  253 (324)
                      .++..||...+.-.                   ..-..|+++..+.+  +....-+-.|++++|++|......+++++..
T Consensus        84 ~Ef~s~i~~i~~~~-------------------~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~  144 (517)
T PRK15317         84 HEFTSLVLALLQVG-------------------GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL  144 (517)
T ss_pred             HHHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence            99999999887632                   12233333333322  2234468899999999999999999999843


Q ss_pred             hhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       254 ~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                          .+++..-.+|...  .+++.++|++.++|++++  +|+.  .+.|..+.+++.+.+.+.
T Consensus       145 ----~~~i~~~~id~~~--~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        145 ----NPNITHTMIDGAL--FQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             ----CCCceEEEEEchh--CHhHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhcc
Confidence                2368899999988  999999999999999965  5543  477988888888888764

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.00  E-value=3e-09  Score=73.80  Aligned_cols=78  Identities=19%  Similarity=0.316  Sum_probs=63.0

Q ss_pred             ccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC
Q psy14086        223 IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG  302 (324)
Q Consensus       223 ~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g  302 (324)
                      +.+..-+..|+++||++|....+.+++++.. +.   ++.+..+|.+.  .++++++|+|.++|++++  +|+.+  +.|
T Consensus        10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~-~~---~i~~~~vd~~~--~~e~a~~~~V~~vPt~vi--dG~~~--~~G   79 (89)
T cd03026          10 LNGPINFETYVSLSCHNCPDVVQALNLMAVL-NP---NIEHEMIDGAL--FQDEVEERGIMSVPAIFL--NGELF--GFG   79 (89)
T ss_pred             cCCCEEEEEEECCCCCCcHHHHHHHHHHHHH-CC---CceEEEEEhHh--CHHHHHHcCCccCCEEEE--CCEEE--EeC
Confidence            3345578899999999999999999999944 32   58999999988  889999999999999964  77654  468


Q ss_pred             CCCHHHHH
Q psy14086        303 SRDLEELY  310 (324)
Q Consensus       303 ~~~~~~l~  310 (324)
                      ..+.+++.
T Consensus        80 ~~~~~e~~   87 (89)
T cd03026          80 RMTLEEIL   87 (89)
T ss_pred             CCCHHHHh
Confidence            76666654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.99  E-value=2e-09  Score=79.31  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhH-hHH--HHHHHhhcCCCCeEEEEEecCCccchhhhh--------hcCCCccceEEEE-e
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAP-TWE--ELGTKLLDNKHGIVIAKVDCTQELSKDLCN--------QEGVDGFPSIYVY-K  292 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~-~~~--~~a~~~~~~~~~~~~~~id~~~~~~~~~~~--------~~~i~~~P~l~~~-~  292 (324)
                      +++++|.|++.||+.|+.+.+ .+.  +++ +.+..  ++.++.+|.+.  .+++.+        .+++.++|+++++ +
T Consensus        15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~-~~l~~--~fv~VkvD~~~--~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~   89 (124)
T cd02955          15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVA-AILNE--NFVPIKVDREE--RPDVDKIYMNAAQAMTGQGGWPLNVFLTP   89 (124)
T ss_pred             CCeEEEEEccCCCHhHHHHHHHccCCHHHH-HHHhC--CEEEEEEeCCc--CcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            468999999999999999876 342  455 33333  58899999887  666654        3589999999999 4


Q ss_pred             cCeeeee---ecCC--CCHHHHHHHHHhh
Q psy14086        293 NGVRTAE---YNGS--RDLEELYQFILKH  316 (324)
Q Consensus       293 ~g~~~~~---~~g~--~~~~~l~~fi~~~  316 (324)
                      +|+.+..   +.+.  .+...+.+++.+.
T Consensus        90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          90 DLKPFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             CCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence            6776532   2222  3445666666543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.98  E-value=1.8e-09  Score=70.99  Aligned_cols=56  Identities=21%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV  290 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~  290 (324)
                      ++.|+++||++|+.+.+.+++++.. .   .++.+..+|.++  ++++.+++++.++|++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~-~---~~i~~~~id~~~--~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAAL-N---PNISAEMIDAAE--FPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHh-C---CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence            6789999999999999999999843 2   258999999988  788999999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.97  E-value=3.2e-09  Score=80.01  Aligned_cols=70  Identities=23%  Similarity=0.488  Sum_probs=54.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccc------------------------hhhhhhCC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH------------------------RSICQSFD  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~------------------------~~~~~~~~  150 (324)
                      ..++++|.||++||++|+...|.+++++++++.. .++.++.++.+..                        ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            4567899999999999999999999999998753 2455554444322                        35778899


Q ss_pred             ccccceEEEEeC-CeE
Q psy14086        151 IKSYPTLLWIES-GKK  165 (324)
Q Consensus       151 i~~~P~~~~~~~-g~~  165 (324)
                      +.++|++++++. |+.
T Consensus        97 v~~~P~~~lid~~G~i  112 (131)
T cd03009          97 IEGIPTLIILDADGEV  112 (131)
T ss_pred             CCCCCEEEEECCCCCE
Confidence            999999999985 543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=1.1e-08  Score=101.75  Aligned_cols=94  Identities=15%  Similarity=0.319  Sum_probs=77.5

Q ss_pred             HHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------ccchhh
Q psy14086         93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------------TQHRSI  145 (324)
Q Consensus        93 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------------~~~~~~  145 (324)
                      +....++++|.||++||++|+...|.|++++++|+++ .+.++.|.+                           +....+
T Consensus       416 ~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~  494 (1057)
T PLN02919        416 RDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYL  494 (1057)
T ss_pred             hhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHH
Confidence            3345678899999999999999999999999999763 477776631                           123457


Q ss_pred             hhhCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        146 CQSFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       146 ~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .+.|+|.++|++++++ +|+...++.|....+.+.+++...+.
T Consensus       495 ~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        495 WRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             HHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            7889999999999995 58888889999999999999998865

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.96  E-value=3.1e-09  Score=80.13  Aligned_cols=68  Identities=21%  Similarity=0.433  Sum_probs=53.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccc-------------------------hhhhhhC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH-------------------------RSICQSF  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~-------------------------~~~~~~~  149 (324)
                      .++.++|.||++||++|+...|.+++++++++++ .++.++.++.+..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3567899999999999999999999999998763 2466665554432                         2456679


Q ss_pred             CccccceEEEEeCC
Q psy14086        150 DIKSYPTLLWIESG  163 (324)
Q Consensus       150 ~i~~~P~~~~~~~g  163 (324)
                      +|.++|++++++.+
T Consensus        96 ~v~~iPt~~lid~~  109 (132)
T cd02964          96 KVEGIPTLVVLKPD  109 (132)
T ss_pred             CCCCCCEEEEECCC
Confidence            99999999999753

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.95  E-value=1.1e-08  Score=79.80  Aligned_cols=85  Identities=18%  Similarity=0.268  Sum_probs=65.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhhhhCCc--cccceEEEEeC-CeEe
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSICQSFDI--KSYPTLLWIES-GKKL  166 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i--~~~P~~~~~~~-g~~~  166 (324)
                      +|.||++||++|++..|.+++++++++-  .+..+.+|-.           ....+...|++  .++|+.++++. |+..
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~--~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGF--SVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCC--EEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            7889999999999999999999999842  3333344422           11236678885  69999999976 5553


Q ss_pred             -eeecCCCCHHHHHHHHHhhhC
Q psy14086        167 -DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       167 -~~~~g~~~~~~i~~fi~~~~~  187 (324)
                       ..+.|..+.+++.+.|...+.
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh
Confidence             468999999999999988876

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.94  E-value=5.1e-09  Score=78.44  Aligned_cols=79  Identities=19%  Similarity=0.379  Sum_probs=60.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec-----------------------CCccchhhhhhc
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC-----------------------TQELSKDLCNQE  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~-----------------------~~~~~~~~~~~~  280 (324)
                      .+++++|.||++||++|+...|.+++++++ +    ++.++.++.                       +.  ...+...|
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~-~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~   96 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQ-G----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDP--DGRVGIDL   96 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHh-c----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECC--cchHHHhc
Confidence            356899999999999999999999999854 2    244554442                       22  45677889


Q ss_pred             CCCccceEEEE-ecCeeeeeecCCCCHHHH
Q psy14086        281 GVDGFPSIYVY-KNGVRTAEYNGSRDLEEL  309 (324)
Q Consensus       281 ~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l  309 (324)
                      ++.++|+.+++ ++|+.+..+.|..+.+.|
T Consensus        97 ~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          97 GVYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            99999976666 688888889998876644

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.94  E-value=5.4e-09  Score=78.76  Aligned_cols=74  Identities=22%  Similarity=0.440  Sum_probs=55.3

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------------------chhhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------------------SKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------------------~~~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.++.+++.....++.+..++.+...                      ...+.+.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            4578999999999999999999999998664433235666666655410                      135677899


Q ss_pred             CCccceEEEEe-cCeee
Q psy14086        282 VDGFPSIYVYK-NGVRT  297 (324)
Q Consensus       282 i~~~P~l~~~~-~g~~~  297 (324)
                      +.++|+++++. +|+.+
T Consensus        97 v~~~P~~~lid~~G~i~  113 (131)
T cd03009          97 IEGIPTLIILDADGEVV  113 (131)
T ss_pred             CCCCCEEEEECCCCCEE
Confidence            99999999996 66544

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG0913|consensus

Probab=98.94  E-value=3.5e-10  Score=89.35  Aligned_cols=101  Identities=32%  Similarity=0.605  Sum_probs=88.8

Q ss_pred             CCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      +.++.++.+++.+.. .+.+++.|++|||+.|+...|+|+..|.-  ..+-.+.++.+|.+.  ++.+.-+|-++..|+|
T Consensus        24 s~~~~~~eenw~~~l-~gewmi~~~ap~~psc~~~~~~~~~~a~~--s~dL~v~va~VDvt~--npgLsGRF~vtaLptI   98 (248)
T KOG0913|consen   24 SKLTRIDEENWKELL-TGEWMIEFGAPWCPSCSDLIPHLENFATV--SLDLGVKVAKVDVTT--NPGLSGRFLVTALPTI   98 (248)
T ss_pred             ceeEEecccchhhhh-chHHHHHhcCCCCccccchHHHHhccCCc--cCCCceeEEEEEEEe--ccccceeeEEEecceE
Confidence            478889999988876 67899999999999999999999999843  233479999999999  9999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +-.++|.-. +|.|.++.+++++|+..
T Consensus        99 YHvkDGeFr-rysgaRdk~dfisf~~~  124 (248)
T KOG0913|consen   99 YHVKDGEFR-RYSGARDKNDFISFEEH  124 (248)
T ss_pred             EEeeccccc-cccCcccchhHHHHHHh
Confidence            999998654 79999999999999974

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.93  E-value=1.2e-08  Score=74.81  Aligned_cols=91  Identities=12%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             CCcEEEEEeCCCChhhhhhhH-hHH--HHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe--cCeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAP-TWE--ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK--NGVRTAE  299 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~-~~~--~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~--~g~~~~~  299 (324)
                      +++++|+|+++||.+|+.+.. .|.  ++. +++..  ++.+..+|.+..+...++..+++.++|+++++.  +|+.+..
T Consensus        17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~-~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~   93 (114)
T cd02958          17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVK-EFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV   93 (114)
T ss_pred             CceEEEEEecCCcchHHHHHHHHcCCHHHH-HHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence            468999999999999999865 452  344 44544  577888888765577889999999999999994  5788888


Q ss_pred             ecCCCCHHHHHHHHHhhcc
Q psy14086        300 YNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       300 ~~g~~~~~~l~~fi~~~~~  318 (324)
                      ..|..+.+++.+.|++...
T Consensus        94 ~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          94 WSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             EcCCCCHHHHHHHHHHHHh
Confidence            9999999999998887643

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.92  E-value=1.7e-08  Score=100.53  Aligned_cols=95  Identities=21%  Similarity=0.349  Sum_probs=74.5

Q ss_pred             cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec---CC----------------------ccchhh
Q psy14086        222 VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC---TQ----------------------ELSKDL  276 (324)
Q Consensus       222 ~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~---~~----------------------~~~~~~  276 (324)
                      ...+++++|.||++||++|+...|.+++++++ +.. .++.++.+..   +.                      .....+
T Consensus       417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~-y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~  494 (1057)
T PLN02919        417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKK-YKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYL  494 (1057)
T ss_pred             hcCCCEEEEEEECCcChhHHhHhHHHHHHHHH-cCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHH
Confidence            34577899999999999999999999999966 443 2466665532   11                      013356


Q ss_pred             hhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        277 CNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       277 ~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .+.|++.++|+++++ ++|+.+..+.|....+.|.++|.+.+.
T Consensus       495 ~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        495 WRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             HHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            678999999999999 689888889999999999999987654

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.91  E-value=5.1e-09  Score=78.95  Aligned_cols=74  Identities=28%  Similarity=0.430  Sum_probs=53.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-----------------------chhhhhhc
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-----------------------SKDLCNQE  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-----------------------~~~~~~~~  280 (324)
                      .++.++|.||++||++|+...|.++++++++.....++.+..++.+...                       ...+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3578999999999999999999999998664322134666666655410                       12455679


Q ss_pred             CCCccceEEEEe-cCeee
Q psy14086        281 GVDGFPSIYVYK-NGVRT  297 (324)
Q Consensus       281 ~i~~~P~l~~~~-~g~~~  297 (324)
                      ++.++|+++++. +|+.+
T Consensus        96 ~v~~iPt~~lid~~G~iv  113 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVV  113 (132)
T ss_pred             CCCCCCEEEEECCCCCEE
Confidence            999999999996 45443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.91  E-value=8.7e-09  Score=78.05  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=55.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC-----CCCeEEEEEecCCcc-----------------------chh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN-----KHGIVIAKVDCTQEL-----------------------SKD  275 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~-----~~~~~~~~id~~~~~-----------------------~~~  275 (324)
                      .+++++|.|||+||++|+...|.+.++..++...     ..++.++.|+.+...                       ...
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            4678999999999999999999999988654321     225777777766410                       124


Q ss_pred             hhhhcCCCccceEEEEe-cCeee
Q psy14086        276 LCNQEGVDGFPSIYVYK-NGVRT  297 (324)
Q Consensus       276 ~~~~~~i~~~P~l~~~~-~g~~~  297 (324)
                      +.+.|++.++|+++++. +|+.+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv  126 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVL  126 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEE
Confidence            66788999999999996 56554

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.91  E-value=1.5e-08  Score=75.48  Aligned_cols=97  Identities=21%  Similarity=0.308  Sum_probs=66.9

Q ss_pred             eeEeccccccccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------
Q psy14086        211 VVSLTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------  270 (324)
Q Consensus       211 v~~l~~~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------  270 (324)
                      ++.++++.+.... .+++++|.||++||++|+...|.+.+++.+ +    .+..+.+|...                   
T Consensus         5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T cd03011           5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-Y----PVVSVALRSGDDGAVARFMQKKGYGFPVIN   79 (123)
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-C----CEEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence            3344444433322 346899999999999999999999998854 2    22222222110                   


Q ss_pred             ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHH
Q psy14086        271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQF  312 (324)
Q Consensus       271 ~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~f  312 (324)
                      ..+..+++.|++.++|+++++..|+....+.|..+.+.|.+-
T Consensus        80 d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~  121 (123)
T cd03011          80 DPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             CCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence            114578889999999999999765566678898888888653

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.89  E-value=1e-08  Score=72.51  Aligned_cols=68  Identities=25%  Similarity=0.568  Sum_probs=51.8

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhhcC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQEG  281 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~~~  281 (324)
                      +++++|+||++||++|+...|.+.++.+++ ....++.++.++.+..                       ....+.+.++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~-~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKY-KKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG   79 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHH-TTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence            357899999999999999999999999764 4244788888887761                       1235778899


Q ss_pred             CCccceEEEEec
Q psy14086        282 VDGFPSIYVYKN  293 (324)
Q Consensus       282 i~~~P~l~~~~~  293 (324)
                      +.++|+++++..
T Consensus        80 i~~iP~~~lld~   91 (95)
T PF13905_consen   80 INGIPTLVLLDP   91 (95)
T ss_dssp             -TSSSEEEEEET
T ss_pred             CCcCCEEEEECC
Confidence            999999999864

...

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.89  E-value=1.8e-08  Score=78.63  Aligned_cols=86  Identities=12%  Similarity=0.189  Sum_probs=65.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------cchhhhhhcCC--CccceEEEE-ecC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------LSKDLCNQEGV--DGFPSIYVY-KNG  294 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------~~~~~~~~~~i--~~~P~l~~~-~~g  294 (324)
                      +|.||++||++|++..|.++++++++     ++.+..++.+..           ....+.+.|++  .++|+.+++ ++|
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G  147 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT  147 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence            77899999999999999999999663     245555554431           01235567884  699999999 577


Q ss_pred             eee-eeecCCCCHHHHHHHHHhhccc
Q psy14086        295 VRT-AEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       295 ~~~-~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +.+ ..+.|..+.+++.+.|.+.++.
T Consensus       148 ~i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        148 LEALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence            764 4789999999999999887653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.87  E-value=2.9e-07  Score=85.58  Aligned_cols=177  Identities=16%  Similarity=0.211  Sum_probs=128.2

Q ss_pred             CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe-EeeeecCCCC
Q psy14086         97 LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRT  174 (324)
Q Consensus        97 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~-~~~~~~g~~~  174 (324)
                      ++++ ++.|.. .|..|..+...+++++..-.   ++.+...+..          ....|++.+..+|+ .-.+|.|-..
T Consensus        18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~---ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~   83 (515)
T TIGR03140        18 ENPVTLVLSAG-SHEKSKELLELLDEIASLSD---KISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPG   83 (515)
T ss_pred             CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCC---CeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCC
Confidence            3445 555555 78999999988888887642   5777543321          13569998887664 3367999988


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHH
Q psy14086        175 LETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGT  252 (324)
Q Consensus       175 ~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~  252 (324)
                      -.++..||...+.-.                   ..-..|+++..+.+-  ....-+-.|+++.|++|......+++++.
T Consensus        84 g~Ef~s~i~~i~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~  144 (515)
T TIGR03140        84 GHEFTSLVLAILQVG-------------------GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMAL  144 (515)
T ss_pred             cHHHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999887632                   222334444433322  23446889999999999999999999984


Q ss_pred             HhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       253 ~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      .    .+++..-.+|...  .+++.++|++.++|++++  +|+.  .+.|..+.+++.+.+.+.
T Consensus       145 ~----~p~i~~~~id~~~--~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       145 L----NPNISHTMIDGAL--FQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAELLEKLEET  198 (515)
T ss_pred             h----CCCceEEEEEchh--CHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhhc
Confidence            3    2268888899888  999999999999999965  5543  467888888888777654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.87  E-value=1.4e-08  Score=74.28  Aligned_cols=74  Identities=22%  Similarity=0.570  Sum_probs=62.9

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCccc
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDIKS  153 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i~~  153 (324)
                      .+++++.||++||++|+...+.+.++..++.. .++.++.++++..                       ..+.+.|++.+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            55789999999999999999999999999962 3688999888775                       78899999999


Q ss_pred             cceEEEEeC-CeEeeeecC
Q psy14086        154 YPTLLWIES-GKKLDKFQG  171 (324)
Q Consensus       154 ~P~~~~~~~-g~~~~~~~g  171 (324)
                      +|+++++++ |+...++.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            999999975 666666654

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>KOG0913|consensus

Probab=98.84  E-value=1.1e-09  Score=86.60  Aligned_cols=103  Identities=23%  Similarity=0.542  Sum_probs=90.6

Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      .+..++++++...+ .+.|++.|++|||+.|....++|...+.--.+ -.+.++.||.+.++.+.-+|-+...|+|+-..
T Consensus        25 ~~~~~~eenw~~~l-~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYHvk  102 (248)
T KOG0913|consen   25 KLTRIDEENWKELL-TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK  102 (248)
T ss_pred             eeEEecccchhhhh-chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEEee
Confidence            67888999998776 56789999999999999999999999876655 47999999999999999999999999999998


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|.- .+|.|+++..+++.|+...--
T Consensus       103 DGeF-rrysgaRdk~dfisf~~~r~w  127 (248)
T KOG0913|consen  103 DGEF-RRYSGARDKNDFISFEEHREW  127 (248)
T ss_pred             cccc-ccccCcccchhHHHHHHhhhh
Confidence            8854 579999999999999986543

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.83  E-value=6.8e-08  Score=70.77  Aligned_cols=90  Identities=18%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHH-HH--HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC--CeEeee
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAP-VW--QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES--GKKLDK  168 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~--g~~~~~  168 (324)
                      ++++++|+|+++||.+|+.+.. .|  .++.+.+..  ++.+..+|.+  +...++..|++.++|+++++.+  |+.+.+
T Consensus        16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~   93 (114)
T cd02958          16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKV   93 (114)
T ss_pred             hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence            4557899999999999999865 34  355656654  6888888876  5668999999999999999975  777888


Q ss_pred             ecCCCCHHHHHHHHHhhhC
Q psy14086        169 FQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       169 ~~g~~~~~~i~~fi~~~~~  187 (324)
                      ..|..+++++...+++...
T Consensus        94 ~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          94 WSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             EcCCCCHHHHHHHHHHHHh
Confidence            9999999999999887654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG0914|consensus

Probab=98.82  E-value=6.3e-09  Score=81.15  Aligned_cols=93  Identities=22%  Similarity=0.417  Sum_probs=76.4

Q ss_pred             CCCCCCCCCeeEe-ccccccccccCC---cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh
Q psy14086        202 SEVPVKPEPVVSL-TSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC  277 (324)
Q Consensus       202 ~~~~~~~~~v~~l-~~~~~~~~~~~~---~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~  277 (324)
                      +|....+..++.+ +++.+++....+   .|+|.|++-|.+.|+.+.|.+-+++.++...  .+.|+++|+..  .++..
T Consensus       117 eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGr--fpd~a  192 (265)
T KOG0914|consen  117 EPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGR--FPDVA  192 (265)
T ss_pred             ccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeecc--CcChH
Confidence            4445566788888 455566655432   4999999999999999999999999775444  79999999999  99999


Q ss_pred             hhcCCC------ccceEEEEecCeeee
Q psy14086        278 NQEGVD------GFPSIYVYKNGVRTA  298 (324)
Q Consensus       278 ~~~~i~------~~P~l~~~~~g~~~~  298 (324)
                      ++|+|+      .+||+++|.+|+++.
T Consensus       193 ~kfris~s~~srQLPT~ilFq~gkE~~  219 (265)
T KOG0914|consen  193 AKFRISLSPGSRQLPTYILFQKGKEVS  219 (265)
T ss_pred             HheeeccCcccccCCeEEEEccchhhh
Confidence            999986      689999999998754

>KOG0914|consensus

Probab=98.82  E-value=7.6e-09  Score=80.71  Aligned_cols=90  Identities=19%  Similarity=0.440  Sum_probs=74.9

Q ss_pred             CCCCCceEc-ChhhHHHHhcCC---CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc-
Q psy14086         78 IVNEGLVEL-TEESFEKYVSLG---NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK-  152 (324)
Q Consensus        78 ~~~~~~~~l-~~~~f~~~~~~~---~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~-  152 (324)
                      ..+..+..+ +.+.++..+.++   .|+|.||+.|.+.|..+.|.+.+++.+|... .++|++||....++.+++|+|. 
T Consensus       121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~  199 (265)
T KOG0914|consen  121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISL  199 (265)
T ss_pred             CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeecc
Confidence            345567777 555666665333   4899999999999999999999999999763 7999999999999999999986 


Q ss_pred             -----ccceEEEEeCCeEeee
Q psy14086        153 -----SYPTLLWIESGKKLDK  168 (324)
Q Consensus       153 -----~~P~~~~~~~g~~~~~  168 (324)
                           +.||+++|++|+...+
T Consensus       200 s~~srQLPT~ilFq~gkE~~R  220 (265)
T KOG0914|consen  200 SPGSRQLPTYILFQKGKEVSR  220 (265)
T ss_pred             CcccccCCeEEEEccchhhhc
Confidence                 5899999999976543

>KOG0911|consensus

Probab=98.81  E-value=1.7e-08  Score=79.66  Aligned_cols=180  Identities=16%  Similarity=0.288  Sum_probs=116.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      .....++.||++||.+|+++...+..+++.+.   ++.|++.+.+..+.++..+.+...|.++++..|+.+.+..|....
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~   92 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP   92 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence            34456899999999999999999999999983   699999999999999999999999999999888888777776544


Q ss_pred             HHHHHHHHhhhCCC--CCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEEEe----CCCChhhhhhhHhHHH
Q psy14086        176 ETLVNYVSKMKGPL--NKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFF----APWCGHCKRLAPTWEE  249 (324)
Q Consensus       176 ~~i~~fi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~f~----~~~c~~C~~~~~~~~~  249 (324)
                      .....+-.-.....  .......+... ..  .+...  . ..+.+++.++.++++++.-    .|.||..+++..+++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~--~~~~~--~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~  166 (227)
T KOG0911|consen   93 FLVSKVEKLAESGSASLGMGLSTTIRE-TQ--TTNET--D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQS  166 (227)
T ss_pred             HHHHHHHHhhhhcccccCCCCCcchhc-cc--ccchh--h-HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHH
Confidence            33333221111110  00000000000 00  00000  1 2234555666667776553    2668887777666655


Q ss_pred             HHHHhhcCCCCeEEEEEecCCccchhhhhhcC-CCccceE-EEEecCe
Q psy14086        250 LGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG-VDGFPSI-YVYKNGV  295 (324)
Q Consensus       250 ~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~P~l-~~~~~g~  295 (324)
                      .         ++.|...|+-+  +++++...+ .+..||+ -+|-+|+
T Consensus       167 ~---------nV~~~~fdIL~--DeelRqglK~fSdWPTfPQlyI~GE  203 (227)
T KOG0911|consen  167 H---------NVNYTIFDVLT--DEELRQGLKEFSDWPTFPQLYVKGE  203 (227)
T ss_pred             c---------CCCeeEEeccC--CHHHHHHhhhhcCCCCccceeECCE
Confidence            4         35688889888  787765544 3467776 4566663

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.80  E-value=3.2e-08  Score=72.31  Aligned_cols=74  Identities=26%  Similarity=0.614  Sum_probs=60.8

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-----------------------hhhhhhcC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-----------------------KDLCNQEG  281 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-----------------------~~~~~~~~  281 (324)
                      +++++|.||++||+.|+...+.+.++..+ +. ..++.++.++.+.  .                       ..+.+.|+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~-~~-~~~~~~~~v~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKE-YK-DDGVEVVGVNVDD--DDPAAVKAFLKKYGITFPVLLDPDGELAKAYG   94 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHH-hC-CCCeEEEEEECCC--CCHHHHHHHHHHcCCCcceEEcCcchHHHhcC
Confidence            56899999999999999999999999865 43 2368888888876  3                       67788999


Q ss_pred             CCccceEEEEe-cCeeeeeecC
Q psy14086        282 VDGFPSIYVYK-NGVRTAEYNG  302 (324)
Q Consensus       282 i~~~P~l~~~~-~g~~~~~~~g  302 (324)
                      +.++|+++++. +|+.+..+.|
T Consensus        95 ~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          95 VRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cCccceEEEECCCCcEEEEecC
Confidence            99999999995 6777666665

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.78  E-value=1.8e-07  Score=87.06  Aligned_cols=137  Identities=18%  Similarity=0.259  Sum_probs=107.6

Q ss_pred             cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086         31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW  108 (324)
Q Consensus        31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~  108 (324)
                      ..|++.+..++. ...++|.|....+++.+|+.....-           ...-..|+++..+.+.  .+...+..|++++
T Consensus        60 ~~p~~~~~~~~~-~~~i~f~g~P~g~Ef~s~i~~i~~~-----------~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~  127 (517)
T PRK15317         60 RKPSFSITRPGE-DTGVRFAGIPMGHEFTSLVLALLQV-----------GGHPPKLDQEVIEQIKALDGDFHFETYVSLS  127 (517)
T ss_pred             CCCEEEEEcCCc-cceEEEEecCccHHHHHHHHHHHHh-----------cCCCCCCCHHHHHHHHhcCCCeEEEEEEcCC
Confidence            369999998554 5578999999999999998876532           1134556666655444  3334589999999


Q ss_pred             CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      |++|......+++++....   ++.+-.+|...+++++++|++.++|++++  +++.  .+.|..+.++|.+.+....
T Consensus       128 Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~~~~~~  198 (517)
T PRK15317        128 CHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEEILAKLDTGA  198 (517)
T ss_pred             CCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhccc
Confidence            9999999999999998754   69999999999999999999999999976  4543  3789999888888887643

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.78  E-value=8.6e-08  Score=69.51  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=80.8

Q ss_pred             ceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHh---cCCCCCeEEEEeccccchhhhhhCCccc--cce
Q psy14086         83 LVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASH---FKTEEDVSIAKIDCTQHRSICQSFDIKS--YPT  156 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~---~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~P~  156 (324)
                      |+++|.++...+...+ +..++|+  .-..-..+...++.+|++   +++  ++.|+.+|.+....+++.||++.  .|.
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence            4678889998887665 4445566  333347788999999999   998  89999999998888999999996  899


Q ss_pred             EEEEeCCe-Eeee-ecCCCCHHHHHHHHHhhhCC
Q psy14086        157 LLWIESGK-KLDK-FQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       157 ~~~~~~g~-~~~~-~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +++..... .... +.+..+.++|.+|+++++.|
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G  110 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG  110 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence            88887632 1222 45789999999999999876

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.77  E-value=6.3e-08  Score=72.36  Aligned_cols=76  Identities=14%  Similarity=0.352  Sum_probs=59.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQS  148 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~  148 (324)
                      ..++++|.||++||++|....|.+++++++++.. .+.++.|+..                           ....+.+.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~  100 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA  100 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence            4567899999999999999999999999999852 5777777541                           11346667


Q ss_pred             CCccccceEEEEeC-CeEeeeecCC
Q psy14086        149 FDIKSYPTLLWIES-GKKLDKFQGS  172 (324)
Q Consensus       149 ~~i~~~P~~~~~~~-g~~~~~~~g~  172 (324)
                      |++..+|+.+++++ |+...++.|+
T Consensus       101 ~~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         101 YGNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             hCCCcCCeEEEECCCCcEEEEEecC
Confidence            89999999999965 7666666654

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>smart00594 UAS UAS domain

Probab=98.76  E-value=8.3e-08  Score=71.10  Aligned_cols=86  Identities=14%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhHh-H--HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cC-e----
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPT-W--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NG-V----  295 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~-~--~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g-~----  295 (324)
                      .+.++|+|+++||.+|..+... |  .++. ++.+.  ++.+..+|.+..+...++..++++++|+++++. .| .    
T Consensus        27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~-~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~  103 (122)
T smart00594       27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVK-SLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIE  103 (122)
T ss_pred             cCCEEEEEeCCCCchHHHHHHHHccCHHHH-HHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEE
Confidence            3589999999999999997553 4  2344 44544  678878888876677889999999999999994 44 2    


Q ss_pred             eeeeecCCCCHHHHHHHH
Q psy14086        296 RTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       296 ~~~~~~g~~~~~~l~~fi  313 (324)
                      ......|..+.++|.++|
T Consensus       104 ~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      104 WVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EeccccCCCCHHHHHHhh
Confidence            245678999999998876

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.73  E-value=8.6e-08  Score=70.63  Aligned_cols=94  Identities=19%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE-ecCeeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY-KNGVRTAEY  300 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~  300 (324)
                      +++++|+|++.||++|+.+...+   .++. ++...  ++..+.++.+.. .... ...+ .++|+++|+ ++|+.+...
T Consensus        23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~-~~l~~--~Fv~V~l~~d~t-d~~~-~~~g-~~vPtivFld~~g~vi~~i   96 (130)
T cd02960          23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQ-KLAQE--DFIMLNLVHETT-DKNL-SPDG-QYVPRIMFVDPSLTVRADI   96 (130)
T ss_pred             CCeEEEEEeCCcCHhHHHHHHHhhCCHHHH-HHHHh--CeEEEEEEeccC-CCCc-CccC-cccCeEEEECCCCCCcccc
Confidence            46899999999999999987754   2344 33333  455556665431 1111 1233 589999999 466554333


Q ss_pred             cC----------CCCHHHHHHHHHhhcccCCCCC
Q psy14086        301 NG----------SRDLEELYQFILKHKVESHDEL  324 (324)
Q Consensus       301 ~g----------~~~~~~l~~fi~~~~~~~~~el  324 (324)
                      .|          +.+.+.|.+=+++...-.+.||
T Consensus        97 ~Gy~~~~~~~y~~~~~~~~~~~m~~a~~~~~~~~  130 (130)
T cd02960          97 TGRYSNRLYTYEPADIPLLIENMKKALKLLKTEL  130 (130)
T ss_pred             cccccCccceeCcCcHHHHHHHHHHHHHHHhccC
Confidence            33          3455677777777666566665

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.72  E-value=1.4e-07  Score=77.51  Aligned_cols=91  Identities=16%  Similarity=0.234  Sum_probs=69.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhh-hhCCc------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSIC-QSFDI------------  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~-~~~~i------------  151 (324)
                      ..++++|.||++||++|....|.+++++++++++ .+.++.|+++.           ...++ +++++            
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            3567899999999999999999999999999863 47888777631           12222 22221            


Q ss_pred             ----------------------cccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        152 ----------------------KSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       152 ----------------------~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                            ...|+.++++. |+.+.+|.|..+.++|.+.|++++.
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                  22477777765 8888899999999999999988764

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.71  E-value=1.5e-07  Score=72.24  Aligned_cols=81  Identities=27%  Similarity=0.557  Sum_probs=61.6

Q ss_pred             ccCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCC
Q psy14086        223 IKSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGV  282 (324)
Q Consensus       223 ~~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i  282 (324)
                      ..+++++|.||+. ||++|+...|.+.++.+.+...  ++.++.+..+.                   +....+.+.+++
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~  103 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGV  103 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTC
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCC
Confidence            4567899999999 9999999999999998654444  46666666544                   123467788998


Q ss_pred             C---------ccceEEEE-ecCeeeeeecCCCC
Q psy14086        283 D---------GFPSIYVY-KNGVRTAEYNGSRD  305 (324)
Q Consensus       283 ~---------~~P~l~~~-~~g~~~~~~~g~~~  305 (324)
                      .         ++|+++++ ++|+.+....|..+
T Consensus       104 ~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  104 TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             EEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             ccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            8         99999887 57777777777644

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.70  E-value=9.8e-08  Score=71.33  Aligned_cols=78  Identities=21%  Similarity=0.390  Sum_probs=58.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-----C--------------------ccchhhhh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----Q--------------------ELSKDLCN  278 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-----~--------------------~~~~~~~~  278 (324)
                      .+++++|.||+.||++|....|.++++.+++...  ++.++.++.+     .                    +....+.+
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~   99 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR   99 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence            4678999999999999999999999999664332  5777766542     1                    01234567


Q ss_pred             hcCCCccceEEEE-ecCeeeeeecCC
Q psy14086        279 QEGVDGFPSIYVY-KNGVRTAEYNGS  303 (324)
Q Consensus       279 ~~~i~~~P~l~~~-~~g~~~~~~~g~  303 (324)
                      .|++.++|+.+++ ++|+.+..+.|+
T Consensus       100 ~~~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         100 AYGNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             HhCCCcCCeEEEECCCCcEEEEEecC
Confidence            7899999999999 478777677664

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.69  E-value=5.4e-07  Score=83.81  Aligned_cols=137  Identities=15%  Similarity=0.289  Sum_probs=107.3

Q ss_pred             cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086         31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW  108 (324)
Q Consensus        31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~  108 (324)
                      ..|++.++.++. ...++|.|....+++.+|+......           ...-..|+++..+.+.  .+...+..|.++.
T Consensus        61 ~~p~~~~~~~~~-~~~i~f~g~P~g~Ef~s~i~~i~~~-----------~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~  128 (515)
T TIGR03140        61 RKPSFTILRDGA-DTGIRFAGIPGGHEFTSLVLAILQV-----------GGHGPKLDEGIIDRIRRLNGPLHFETYVSLT  128 (515)
T ss_pred             CCCeEEEecCCc-ccceEEEecCCcHHHHHHHHHHHHh-----------cCCCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence            359999987554 4578999999999999998876542           1134556666655544  3334588999999


Q ss_pred             CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      |++|......+++++....   ++..-.+|...+++++++|++.++|++++  +++.  .+.|..+.+++.+.+....
T Consensus       129 Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       129 CQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             CCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHHHHHHHhhcc
Confidence            9999999999999998865   58899999999999999999999999976  4443  3789889888877776653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>smart00594 UAS UAS domain

Probab=98.66  E-value=4e-07  Score=67.43  Aligned_cols=85  Identities=11%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHH-H--HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC-C-e----
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPV-W--QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES-G-K----  164 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~-g-~----  164 (324)
                      +.+.++|+|+++||.+|..+... |  .++.+.+..  ++.+..+|.+  +...+++.|+++++|+++++.+ | .    
T Consensus        26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~  103 (122)
T smart00594       26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIE  103 (122)
T ss_pred             hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEE
Confidence            34578999999999999988763 2  345555544  6888778865  5568999999999999999976 3 1    


Q ss_pred             EeeeecCCCCHHHHHHHH
Q psy14086        165 KLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi  182 (324)
                      ...+..|..+++++..++
T Consensus       104 ~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      104 WVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EeccccCCCCHHHHHHhh
Confidence            345678999999998876

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.66  E-value=1.8e-07  Score=68.53  Aligned_cols=66  Identities=17%  Similarity=0.295  Sum_probs=43.9

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEE-ecCCccc-----------------hhhhhhcCCCcc
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV-DCTQELS-----------------KDLCNQEGVDGF  285 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~i-d~~~~~~-----------------~~~~~~~~i~~~  285 (324)
                      ++++++|.||++||++|+...|.+++++.+ +..  ++.++.+ +.+....                 .++.+.|++.++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~-~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   96 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARA-EAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL   96 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHH-hcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence            367899999999999999999999998855 433  3444444 2111001                 234455666677


Q ss_pred             ceEEEEe
Q psy14086        286 PSIYVYK  292 (324)
Q Consensus       286 P~l~~~~  292 (324)
                      |+.+++.
T Consensus        97 P~~~vid  103 (114)
T cd02967          97 PYAVLLD  103 (114)
T ss_pred             CeEEEEC
Confidence            7777664

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.66  E-value=3.2e-07  Score=66.43  Aligned_cols=98  Identities=11%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             EcChhhHHHHhcCCCEEEEEe----CCCCHhHhhHHHHHHHHHHhcC-CCCCeEEEEeccccchhhhhhCCccc----cc
Q psy14086         85 ELTEESFEKYVSLGNHFVKFY----APWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDCTQHRSICQSFDIKS----YP  155 (324)
Q Consensus        85 ~l~~~~f~~~~~~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~-~~~~i~~~~vd~~~~~~~~~~~~i~~----~P  155 (324)
                      .+|.++.......+ .++.|+    +..-..-..+...+.++|+.++ +  ++.|+.+|.+.+..+++.||++.    .|
T Consensus         3 ~~~~en~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P   79 (111)
T cd03073           3 HRTKDNRAQFTKKP-LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEKP   79 (111)
T ss_pred             eeccchHHHhccCC-eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence            46677777775443 344333    3344556778999999999999 7  79999999998888999999984    89


Q ss_pred             eEEEEeCCeEeeeecCCC-CHHHHHHHHHhh
Q psy14086        156 TLLWIESGKKLDKFQGSR-TLETLVNYVSKM  185 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~-~~~~i~~fi~~~  185 (324)
                      +++++..........+.. +.++|.+|++++
T Consensus        80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             EEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence            999987533222246678 999999999876

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.65  E-value=6.5e-08  Score=70.92  Aligned_cols=58  Identities=17%  Similarity=0.373  Sum_probs=42.1

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEe---ccccchhhhhhCCccccce
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI---DCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~v---d~~~~~~~~~~~~i~~~P~  156 (324)
                      .++++|.||++||++|+...|.++++++.+.+  ++.++.+   +.+....+++++++..+|.
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~   81 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPY   81 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcE
Confidence            56789999999999999999999999988865  4555544   2223344556666655554

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.63  E-value=8.6e-07  Score=66.16  Aligned_cols=107  Identities=18%  Similarity=0.330  Sum_probs=80.9

Q ss_pred             CceEcChhhH-HHHhcCCCE-EEEEeCC--CCHh-H-hhHHHHHHHHHHhcCCCCC-eEEEEeccccchhhhhhCCcc--
Q psy14086         82 GLVELTEESF-EKYVSLGNH-FVKFYAP--WCGH-C-QSLAPVWQELASHFKTEED-VSIAKIDCTQHRSICQSFDIK--  152 (324)
Q Consensus        82 ~~~~l~~~~f-~~~~~~~~~-~v~f~~~--~c~~-c-~~~~~~~~~la~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~--  152 (324)
                      .+.+|+.+++ +..-..+.+ +|.|...  .|.. + ..+...+.++|++|++  + +.|+.+|.+....+.+.|||.  
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~   80 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF   80 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence            4677776655 444434444 5555432  1222 2 5678899999999998  7 999999999998899999996  


Q ss_pred             ccceEEEEeCCe-EeeeecCCCCHHHHHHHHHhhhCCCC
Q psy14086        153 SYPTLLWIESGK-KLDKFQGSRTLETLVNYVSKMKGPLN  190 (324)
Q Consensus       153 ~~P~~~~~~~g~-~~~~~~g~~~~~~i~~fi~~~~~~~~  190 (324)
                      .+|+++++...+ .+..+.|.++.++|.+|+++++.|+.
T Consensus        81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence            499999998744 33336799999999999999999874

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.61  E-value=3.3e-07  Score=73.95  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhhhhCCcc------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSICQSFDIK------------  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i~------------  152 (324)
                      ..++++|.||++||++|...+|.+.+++++++++ .+.++.|+++           +-..+++++++.            
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~  116 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE  116 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence            3567899999999999999999999999999763 5888888753           123445554431            


Q ss_pred             ------------------------ccc---eEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        153 ------------------------SYP---TLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       153 ------------------------~~P---~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                                              .+|   +.++++ +|+.+.++.|..+.+.+.+.|...+..
T Consensus       117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~  180 (199)
T PTZ00056        117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV  180 (199)
T ss_pred             ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                                    112   355554 477778888989999999999988873

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.61  E-value=4e-07  Score=69.88  Aligned_cols=79  Identities=22%  Similarity=0.508  Sum_probs=60.6

Q ss_pred             hcCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---------------------hhhhhhCCcc
Q psy14086         95 VSLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---------------------RSICQSFDIK  152 (324)
Q Consensus        95 ~~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---------------------~~~~~~~~i~  152 (324)
                      ...++++|.||++ ||++|...+|.+.++++.++.+ .+.++.|..+.+                     ..+.+.|++.
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  104 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT  104 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence            3466789999999 9999999999999999987653 466665554322                     4688889988


Q ss_pred             ---------ccceEEEEeC-CeEeeeecCCCC
Q psy14086        153 ---------SYPTLLWIES-GKKLDKFQGSRT  174 (324)
Q Consensus       153 ---------~~P~~~~~~~-g~~~~~~~g~~~  174 (324)
                               .+|++++++. |+....+.|...
T Consensus       105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             EECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             cccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                     9999988876 666666667654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.60  E-value=5.7e-07  Score=72.08  Aligned_cols=90  Identities=21%  Similarity=0.301  Sum_probs=63.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc------------------ccchhhhhhCCccccceE
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC------------------TQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~------------------~~~~~~~~~~~i~~~P~~  157 (324)
                      ..+++++.||++||++|+...|.+.++.+....  ++.++..|.                  .....+.+.|++..+|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            455789999999999999999999999876533  455554221                  013467788999999999


Q ss_pred             EEEeCCeEeeeecCC-CCHHHHHHHHHhhhCC
Q psy14086        158 LWIESGKKLDKFQGS-RTLETLVNYVSKMKGP  188 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~-~~~~~i~~fi~~~~~~  188 (324)
                      +++++...+. +.|. .+.+.+.+.++..-.+
T Consensus       151 ~lID~~G~I~-~~g~~~~~~~le~ll~~l~~~  181 (189)
T TIGR02661       151 VLLDQDGKIR-AKGLTNTREHLESLLEADREG  181 (189)
T ss_pred             EEECCCCeEE-EccCCCCHHHHHHHHHHHHcC
Confidence            8887643332 4554 4667788888765443

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.60  E-value=3.2e-07  Score=72.10  Aligned_cols=81  Identities=10%  Similarity=0.097  Sum_probs=61.0

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEE------EEeccc-----------------------------c
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI------AKIDCT-----------------------------Q  141 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~------~~vd~~-----------------------------~  141 (324)
                      .+.++|.|||.||++|+..+|.+.+++.+     ++.+      ..||.+                             .
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            55689999999999999999999999754     2333      333332                             2


Q ss_pred             chhhhhhCCccccceE-EEEeC-CeEeeeecCCCCHHHHHHHH
Q psy14086        142 HRSICQSFDIKSYPTL-LWIES-GKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       142 ~~~~~~~~~i~~~P~~-~~~~~-g~~~~~~~g~~~~~~i~~fi  182 (324)
                      ...+...||+.+.|+. ++++. |+...++.|..+.+++.+.+
T Consensus       134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            2346668899999877 67765 88888899999999887743

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.59  E-value=6e-07  Score=73.76  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------c---cchhhh-hhcCC-----------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------E---LSKDLC-NQEGV-----------  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~---~~~~~~-~~~~i-----------  282 (324)
                      .+++++|.||++||++|....|.++++.+++...  ++.++-++++.      .   +..++. +++++           
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~  175 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN  175 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence            4578999999999999999999999999764333  57777777531      0   011221 12221           


Q ss_pred             -----------------------CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 -----------------------DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 -----------------------~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                             ...|+.+++ ++|+.+..|.|..+.++|...|++.++
T Consensus       176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                   124677777 678888899999999999999988764

>PLN02412 probable glutathione peroxidase

Probab=98.55  E-value=4.4e-07  Score=71.19  Aligned_cols=91  Identities=18%  Similarity=0.289  Sum_probs=67.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--------cchh----hhhhCC-------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--------QHRS----ICQSFD-------------  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--------~~~~----~~~~~~-------------  150 (324)
                      ..+.++|.||++||++|+...|.++++.++|++. .+.++.|+++        ....    ++++++             
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g  106 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG  106 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence            3467899999999999999999999999999863 5888888753        1111    122222             


Q ss_pred             ---------------------ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        151 ---------------------IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       151 ---------------------i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                           +...|+.++++. |+...++.|..+.+++...|+..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                 223467677744 7778888999999999999988775

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.54  E-value=7.5e-07  Score=71.86  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhhcCCC-----------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQEGVD-----------  283 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~~~i~-----------  283 (324)
                      .+++++|.||++||++|+...|.++++..++...  ++.+..++++.         .....+.++++++           
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g  115 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNG  115 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccC
Confidence            4678999999999999999999999999775433  57777777531         0012233333331           


Q ss_pred             -------------------------ccc---eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        284 -------------------------GFP---SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       284 -------------------------~~P---~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                                               .+|   +.+++ ++|+.+..+.|..+.+.+.+.|.+.+++
T Consensus       116 ~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~  180 (199)
T PTZ00056        116 ENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV  180 (199)
T ss_pred             CccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                                     122   34445 6788888888988888999999887764

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.53  E-value=1.5e-06  Score=68.66  Aligned_cols=92  Identities=13%  Similarity=0.246  Sum_probs=70.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------------chhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------------~~~~~  146 (324)
                      ..++++++||++||+.|....+.+.++..++... ++.|+.+..+.                             ...++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            4667899999999999999999999999999742 57777776542                             13566


Q ss_pred             hhCCccccceEEEEeCCeEeeeec-----------CCCCHHHHHHHHHhhhCCC
Q psy14086        147 QSFDIKSYPTLLWIESGKKLDKFQ-----------GSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       147 ~~~~i~~~P~~~~~~~g~~~~~~~-----------g~~~~~~i~~fi~~~~~~~  189 (324)
                      +.|++...|++++++++..+. |.           +..+.+++.+-|+..+.+.
T Consensus       103 ~~~~v~~~P~~~lid~~G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  155 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLAGK  155 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeEE-EeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence            788999999999997643332 33           2246788999999998865

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.51  E-value=1.4e-07  Score=85.06  Aligned_cols=103  Identities=17%  Similarity=0.344  Sum_probs=76.6

Q ss_pred             eEeccc-ccccccc-C--CcEEEEEeCCCChhhhhhhHhHH-HHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCc
Q psy14086        212 VSLTSE-NFNDVIK-S--GTVFIKFFAPWCGHCKRLAPTWE-ELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDG  284 (324)
Q Consensus       212 ~~l~~~-~~~~~~~-~--~~~~v~f~~~~c~~C~~~~~~~~-~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~  284 (324)
                      ..++.. .+++... +  ++++|+||++||-.||.+.+..- +.. . .....++.....|.+.+  ++.++.+++++-+
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~-v-~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G  534 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQ-V-QQALQDVVLLQADVTANDPAITALLKRLGVFG  534 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHH-H-HHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence            344444 4555553 2  38999999999999999877654 222 1 12233689999999873  3346778999999


Q ss_pred             cceEEEEe-cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        285 FPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       285 ~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      .|++++|+ +|++.....|..+.+.+.+++++.
T Consensus       535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            99999997 677766688999999999999875

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.51  E-value=5.9e-07  Score=70.67  Aligned_cols=89  Identities=10%  Similarity=0.013  Sum_probs=61.1

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------------cchhhh
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------------LSKDLC  277 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~  277 (324)
                      ++.++|.||+.||++|+.-.|.+.+++.+-+..+..=.-..||.++.                           ....+.
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK  138 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence            57899999999999999999999999754222100000033333320                           022455


Q ss_pred             hhcCCCccceE-EEE-ecCeeeeeecCCCCHHHHHHHH
Q psy14086        278 NQEGVDGFPSI-YVY-KNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       278 ~~~~i~~~P~l-~~~-~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      ..+++.++|+. +++ ++|+.+..+.|..+.+++.+++
T Consensus       139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       139 NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             HhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            68899999877 566 6788888899998888877733

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.49  E-value=2.3e-06  Score=63.91  Aligned_cols=105  Identities=17%  Similarity=0.318  Sum_probs=79.1

Q ss_pred             CCeeEecccc-ccccccC-CcEEEEEeCCC--Chh-h-hhhhHhHHHHHHHhhcCCCC-eEEEEEecCCccchhhhhhcC
Q psy14086        209 EPVVSLTSEN-FNDVIKS-GTVFIKFFAPW--CGH-C-KRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDLCNQEG  281 (324)
Q Consensus       209 ~~v~~l~~~~-~~~~~~~-~~~~v~f~~~~--c~~-C-~~~~~~~~~~a~~~~~~~~~-~~~~~id~~~~~~~~~~~~~~  281 (324)
                      ..+..|+.++ +++.+.+ +.|+|.|....  |.. + ......+.++|++ +++  + +.|+++|++.  ...+.+.||
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~-~kg--k~i~Fv~vd~~~--~~~~~~~fg   76 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEK-FKK--KPWGWLWTEAGA--QLDLEEALN   76 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHH-hcC--CcEEEEEEeCcc--cHHHHHHcC
Confidence            3577888776 5666644 46888886421  332 3 3478889999966 555  5 9999999999  777999999


Q ss_pred             CC--ccceEEEEecCe-eeeeecCCCCHHHHHHHHHhhcc
Q psy14086        282 VD--GFPSIYVYKNGV-RTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       282 i~--~~P~l~~~~~g~-~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ++  ++|+++++...+ ++..+.|..+.++|.+|+.+.+.
T Consensus        77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence            95  599999996543 55448899999999999999865

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.48  E-value=3.2e-07  Score=62.81  Aligned_cols=64  Identities=22%  Similarity=0.455  Sum_probs=47.4

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  162 (324)
                      ++++++|+|+++||++|+.+...+   .++.+.+..  ++.++.+|.+.........+ .++|+++++++
T Consensus        16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp   82 (82)
T PF13899_consen   16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP   82 (82)
T ss_dssp             HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence            567889999999999999998766   344443444  79999999886554332222 66999999864

...

>PLN02412 probable glutathione peroxidase

Probab=98.48  E-value=2.4e-06  Score=67.00  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------ccchhh----hhhcC------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------ELSKDL----CNQEG------------  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~~~~~~----~~~~~------------  281 (324)
                      .+++++|.||++||+.|+...|.++++..++...  ++.+.-++++.      ....++    .++++            
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~  105 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN  105 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence            4578999999999999999999999999775433  57777776531      001111    12212            


Q ss_pred             ----------------------CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        282 ----------------------VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       282 ----------------------i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                            +...|+.+++ ++|+.+..+.|..+.+++...|.+.++
T Consensus       106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                  2334676677 678888888999999999999988765

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.48  E-value=6.3e-07  Score=81.01  Aligned_cols=99  Identities=16%  Similarity=0.380  Sum_probs=76.9

Q ss_pred             eEcChh-hHHHHh-cC--CCEEEEEeCCCCHhHhhHHHHHH---HHHHhcCCCCCeEEEEeccccc----hhhhhhCCcc
Q psy14086         84 VELTEE-SFEKYV-SL--GNHFVKFYAPWCGHCQSLAPVWQ---ELASHFKTEEDVSIAKIDCTQH----RSICQSFDIK  152 (324)
Q Consensus        84 ~~l~~~-~f~~~~-~~--~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~  152 (324)
                      ..++.. ..++.+ +.  +++++.||++||-.|+.+.+..-   ++..+..   ++...++|.+++    .++.++||+-
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---~~vlLqaDvT~~~p~~~~lLk~~~~~  533 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---DVVLLQADVTANDPAITALLKRLGVF  533 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence            444444 666666 33  37899999999999999887543   3333444   599999998854    5788999999


Q ss_pred             ccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086        153 SYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       153 ~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      +.|++++|+. |+......|..+++.+.+++++.
T Consensus       534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            9999999984 66666688999999999999875

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.47  E-value=9.4e-07  Score=65.17  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC-CeEeeeecC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES-GKKLDKFQG  171 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g  171 (324)
                      ++++++|+|++.||++|+.+....   .++.+....  .+..+.++.+....-....| ..+|++++++. |+...+..|
T Consensus        22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~G   98 (130)
T cd02960          22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITG   98 (130)
T ss_pred             CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccccc
Confidence            566889999999999999998754   234444433  46655666542211111234 57999999976 544433333

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.47  E-value=2e-06  Score=71.94  Aligned_cols=101  Identities=23%  Similarity=0.359  Sum_probs=76.6

Q ss_pred             CCceEcC-hhhHHHHhcCC----CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         81 EGLVELT-EESFEKYVSLG----NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        81 ~~~~~l~-~~~f~~~~~~~----~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ..+.+++ .+.|...+.+.    .++|+||.+.++.|..+...|..||.+|..   +.|+++.+...+ +...|.+...|
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-~~~~f~~~~LP  200 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-ASENFPDKNLP  200 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-TTTTS-TTC-S
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-cccCCcccCCC
Confidence            4677885 57888877432    368999999999999999999999999986   999999877654 78899999999


Q ss_pred             eEEEEeCCeEeeeecC-------CCCHHHHHHHHHhh
Q psy14086        156 TLLWIESGKKLDKFQG-------SRTLETLVNYVSKM  185 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~~  185 (324)
                      +|++|++|..+..+.|       .++..+|..|+.++
T Consensus       201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            9999999987766643       36788899988865

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.46  E-value=1.7e-06  Score=72.38  Aligned_cols=101  Identities=23%  Similarity=0.374  Sum_probs=74.0

Q ss_pred             CCeeEecc-ccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086        209 EPVVSLTS-ENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD  283 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~  283 (324)
                      +.|..|+. +.|.+.+..    ..|+|.||.+.+..|..+-..|..||.+ +.   .+.|++|.+..  .+ +...|.+.
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~k-yp---~vKFvkI~a~~--~~-~~~~f~~~  197 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARK-YP---EVKFVKIRASK--CP-ASENFPDK  197 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--T---TSEEEEEEECG--CC-TTTTS-TT
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHh-CC---ceEEEEEehhc--cC-cccCCccc
Confidence            67888865 667776643    2499999999999999999999999976 33   48999999876  33 66889999


Q ss_pred             ccceEEEEecCeeeeeecC-------CCCHHHHHHHHHhh
Q psy14086        284 GFPSIYVYKNGVRTAEYNG-------SRDLEELYQFILKH  316 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~~  316 (324)
                      .+|+|++|++|..+..+.|       ..+..+|..||.++
T Consensus       198 ~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  198 NLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             C-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             CCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            9999999999976544432       36678999999875

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG2501|consensus

Probab=98.45  E-value=6.2e-07  Score=67.42  Aligned_cols=76  Identities=24%  Similarity=0.500  Sum_probs=57.4

Q ss_pred             cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhh
Q psy14086        222 VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCN  278 (324)
Q Consensus       222 ~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~  278 (324)
                      ..+++.+.++|.+.||++|+.+.|.+.++-.+....+..+.++.++.+..                       ...++.+
T Consensus        30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~  109 (157)
T KOG2501|consen   30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE  109 (157)
T ss_pred             hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence            44567899999999999999999999988866554444566666666551                       1136677


Q ss_pred             hcCCCccceEEEEe-cCeee
Q psy14086        279 QEGVDGFPSIYVYK-NGVRT  297 (324)
Q Consensus       279 ~~~i~~~P~l~~~~-~g~~~  297 (324)
                      +|+|.++|++++.+ +|..+
T Consensus       110 ky~v~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen  110 KYEVKGIPALVILKPDGTVV  129 (157)
T ss_pred             hcccCcCceeEEecCCCCEe
Confidence            89999999998885 66554

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.45  E-value=2.7e-06  Score=68.23  Aligned_cols=101  Identities=16%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             CeeEeccccccc---cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC----------------
Q psy14086        210 PVVSLTSENFND---VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ----------------  270 (324)
Q Consensus       210 ~v~~l~~~~~~~---~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~----------------  270 (324)
                      .+..++++.+.-   ...+++++|.||++||++|+...|.+.++.++ ..  .++.++..+...                
T Consensus        56 ~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~-~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~  132 (189)
T TIGR02661        56 NLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARA-EE--TDVVMISDGTPAEHRRFLKDHELGGERY  132 (189)
T ss_pred             EecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHh-cC--CcEEEEeCCCHHHHHHHHHhcCCCccee
Confidence            344455554321   23456899999999999999999999998743 21  234433311000                


Q ss_pred             ccchhhhhhcCCCccceEEEEe-cCeeeeeecCC-CCHHHHHHHHHh
Q psy14086        271 ELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGS-RDLEELYQFILK  315 (324)
Q Consensus       271 ~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~-~~~~~l~~fi~~  315 (324)
                      ....++.+.|++.++|+.+++. +|+..  +.|. .+.+.+.+.+..
T Consensus       133 ~~~~~i~~~y~v~~~P~~~lID~~G~I~--~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       133 VVSAEIGMAFQVGKIPYGVLLDQDGKIR--AKGLTNTREHLESLLEA  177 (189)
T ss_pred             echhHHHHhccCCccceEEEECCCCeEE--EccCCCCHHHHHHHHHH
Confidence            0124666788999999988874 66554  3454 355666666653

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.43  E-value=1.3e-06  Score=67.52  Aligned_cols=41  Identities=15%  Similarity=0.204  Sum_probs=35.3

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC  139 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~  139 (324)
                      .++++|.||++||+ |...+|.+++++++++.. .+.++.|++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~   62 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPC   62 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEecc
Confidence            56789999999999 999999999999999753 588887764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.43  E-value=2.7e-06  Score=65.78  Aligned_cols=89  Identities=13%  Similarity=0.253  Sum_probs=64.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhhhh-CCc------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSICQS-FDI------------  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~~~-~~i------------  151 (324)
                      ..++++|.||++||++|...+|.+.+++++++.+ .+.++.+++.           .-..++++ +++            
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~   99 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG   99 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence            3556789999999999999999999999999753 5888877751           11223322 221            


Q ss_pred             -----------c---ccce----EEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086        152 -----------K---SYPT----LLWIES-GKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       152 -----------~---~~P~----~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                                 .   ..|+    .++++. |+...+|.|..+.++|...|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence                       1   2564    555544 88888899999999998888764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.42  E-value=1.4e-06  Score=58.11  Aligned_cols=69  Identities=16%  Similarity=0.360  Sum_probs=52.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      +..|+++||++|+...+.|.+.        .+.+..+|++.+..    +.+.+++.++|++++.  |+.   ..| .+.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~   67 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPE   67 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHH
Confidence            5689999999999998877651        47788888876543    5667999999999874  432   455 5788


Q ss_pred             HHHHHHH
Q psy14086        177 TLVNYVS  183 (324)
Q Consensus       177 ~i~~fi~  183 (324)
                      .|.+||+
T Consensus        68 ~i~~~i~   74 (74)
T TIGR02196        68 KLDQLLE   74 (74)
T ss_pred             HHHHHhC
Confidence            8888873

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.42  E-value=3.5e-06  Score=68.56  Aligned_cols=84  Identities=21%  Similarity=0.333  Sum_probs=66.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------cchhhhhhCCccccceEEEEeCCe--
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------QHRSICQSFDIKSYPTLLWIESGK--  164 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------~~~~~~~~~~i~~~P~~~~~~~g~--  164 (324)
                      .++.-+++||.+.|+.|..+.|.++.++.+++=  .+..+.+|..         .+..+++++||..+|+++++..+.  
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            344459999999999999999999999999954  4555555532         357899999999999999998743  


Q ss_pred             EeeeecCCCCHHHHHHH
Q psy14086        165 KLDKFQGSRTLETLVNY  181 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~f  181 (324)
                      ....-.|..+.++|.+=
T Consensus       197 ~~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEEeeecCCHHHHHHh
Confidence            34445688999888763

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.42  E-value=1.5e-06  Score=58.04  Aligned_cols=69  Identities=25%  Similarity=0.443  Sum_probs=51.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      +..|+++||++|+.+.+.|.+.         ++.+..+|++.  ++    ++.+.+++.++|++++.  |+.   ..| .
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~--~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~   64 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEK--DSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-F   64 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccC--CHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-C
Confidence            5689999999999998777542         46778888876  33    34567899999999874  533   556 4


Q ss_pred             CHHHHHHHHH
Q psy14086        305 DLEELYQFIL  314 (324)
Q Consensus       305 ~~~~l~~fi~  314 (324)
                      +.+.|.++|+
T Consensus        65 ~~~~i~~~i~   74 (74)
T TIGR02196        65 DPEKLDQLLE   74 (74)
T ss_pred             CHHHHHHHhC
Confidence            7788888763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG1672|consensus

Probab=98.41  E-value=1.2e-06  Score=67.47  Aligned_cols=87  Identities=22%  Similarity=0.342  Sum_probs=77.0

Q ss_pred             CceEcC-hhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELT-EESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~-~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ...++. +..|.... ....+++.||-+.-..|+-+-..|..||..+-+   ..|++||+...+-++.+++|+.+|++.+
T Consensus        67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            466665 66777777 555789999999999999999999999999876   8999999999999999999999999999


Q ss_pred             EeCCeEeeeecC
Q psy14086        160 IESGKKLDKFQG  171 (324)
Q Consensus       160 ~~~g~~~~~~~g  171 (324)
                      |.+|....++.|
T Consensus       144 ~k~g~~~D~iVG  155 (211)
T KOG1672|consen  144 FKNGKTVDYVVG  155 (211)
T ss_pred             EEcCEEEEEEee
Confidence            999988877765

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.40  E-value=3.7e-06  Score=56.55  Aligned_cols=71  Identities=25%  Similarity=0.502  Sum_probs=54.7

Q ss_pred             EeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecC-CCCHHHHHHHH
Q psy14086        104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG-SRTLETLVNYV  182 (324)
Q Consensus       104 f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g-~~~~~~i~~fi  182 (324)
                      +++++|+.|..+...+++++..+.    +.+-.+|....+.+ .+|||.++|++++  +|+.  ++.| ..+.+.|.+||
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l   75 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELL   75 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence            478889999999999999999983    55666666666666 9999999999965  5653  4889 68889999887


Q ss_pred             H
Q psy14086        183 S  183 (324)
Q Consensus       183 ~  183 (324)
                      +
T Consensus        76 ~   76 (76)
T PF13192_consen   76 E   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            4

...

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.40  E-value=1.6e-06  Score=63.42  Aligned_cols=82  Identities=32%  Similarity=0.697  Sum_probs=66.1

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCC--ccccceEEEEeCCeEeeeecC--
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFD--IKSYPTLLWIESGKKLDKFQG--  171 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g--  171 (324)
                      ..+.++.||++||++|+.+.|.+.+++..+..  .+.+..+|.. ....+...++  +..+|+++++.++.....+.+  
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  109 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK  109 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence            55678888999999999999999999999986  6899999987 7889999999  899999998887765444444  


Q ss_pred             CCCHHHHHH
Q psy14086        172 SRTLETLVN  180 (324)
Q Consensus       172 ~~~~~~i~~  180 (324)
                      ......+..
T Consensus       110 ~~~~~~~~~  118 (127)
T COG0526         110 VLPKEALID  118 (127)
T ss_pred             cCCHHHHHH
Confidence            344444433

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.38  E-value=7.7e-07  Score=60.94  Aligned_cols=62  Identities=27%  Similarity=0.572  Sum_probs=44.5

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~  292 (324)
                      +++++|+|+++||+.|+.+...+   .++. +....  ++.++.+|.+.  .+... .+...++|+++++.
T Consensus        17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~-~~~~~--~fv~v~vd~~~--~~~~~-~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQ-EALNK--NFVLVKVDVDD--EDPNA-QFDRQGYPTFFFLD   81 (82)
T ss_dssp             TSEEEEEEETTTTHHHHHHHHHTTTSHHHH-HHHHH--CSEEEEEETTT--HHHHH-HHHHCSSSEEEEEE
T ss_pred             CCCEEEEEECCCCHhHHHHHHHHcCCHHHH-HHHHC--CEEEEEEEcCC--CChhH-HhCCccCCEEEEeC
Confidence            57899999999999999987766   2344 32333  69999999977  33322 22226799999875

...

>KOG2501|consensus

Probab=98.37  E-value=9.4e-07  Score=66.46  Aligned_cols=73  Identities=18%  Similarity=0.473  Sum_probs=56.0

Q ss_pred             HhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCC---CeEEEEeccccc-----------------------hhhhh
Q psy14086         94 YVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEE---DVSIAKIDCTQH-----------------------RSICQ  147 (324)
Q Consensus        94 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~---~i~~~~vd~~~~-----------------------~~~~~  147 (324)
                      .+.++.+.++|.+.||++|+++.|.+.++++......   .|.|+.-|-+..                       .++++
T Consensus        30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~  109 (157)
T KOG2501|consen   30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE  109 (157)
T ss_pred             hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence            4456677899999999999999999999999887741   355555554322                       56788


Q ss_pred             hCCccccceEEEEeC-CeEe
Q psy14086        148 SFDIKSYPTLLWIES-GKKL  166 (324)
Q Consensus       148 ~~~i~~~P~~~~~~~-g~~~  166 (324)
                      +|+|.++|+++++.+ |..+
T Consensus       110 ky~v~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen  110 KYEVKGIPALVILKPDGTVV  129 (157)
T ss_pred             hcccCcCceeEEecCCCCEe
Confidence            999999999999877 4343

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.36  E-value=2.3e-06  Score=62.60  Aligned_cols=84  Identities=27%  Similarity=0.595  Sum_probs=64.8

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcC--CCccceEEEEecCeeeeeec
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEG--VDGFPSIYVYKNGVRTAEYN  301 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~--i~~~P~l~~~~~g~~~~~~~  301 (324)
                      ++++++.||++||++|+...|.+.+++.+ +..  .+.+..+|.. .  ..++...++  +..+|+++++.+|.....+.
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~i~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  106 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEE-YGG--DVEVVAVNVDDE--NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLV  106 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHH-hcC--CcEEEEEECCCC--ChHHHHHHhhhhccCCeEEEEeCcchhhhhh
Confidence            56788888999999999999999999966 443  5888889986 5  688888999  88999999888886654445


Q ss_pred             C--CCCHHHHHHHH
Q psy14086        302 G--SRDLEELYQFI  313 (324)
Q Consensus       302 g--~~~~~~l~~fi  313 (324)
                      |  ......+..-.
T Consensus       107 ~~~~~~~~~~~~~~  120 (127)
T COG0526         107 GGKVLPKEALIDAL  120 (127)
T ss_pred             hcccCCHHHHHHHh
Confidence            4  34444444433

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.34  E-value=5.7e-06  Score=65.98  Aligned_cols=90  Identities=19%  Similarity=0.300  Sum_probs=63.2

Q ss_pred             CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------c----hhh-hhhC--------------
Q psy14086         97 LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------H----RSI-CQSF--------------  149 (324)
Q Consensus        97 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------~----~~~-~~~~--------------  149 (324)
                      .+++ ++.+|++||++|...+|.++++.+++++. .+.++.++++.       .    ..+ .+++              
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g  118 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG  118 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence            4444 45669999999999999999999999763 58888776521       0    011 1111              


Q ss_pred             ----------------------Cccccce---EEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        150 ----------------------DIKSYPT---LLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       150 ----------------------~i~~~P~---~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                            ++..+|+   .++++ +|....+|.|..+.+.+.+.|.+.+.
T Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~  182 (183)
T PTZ00256        119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN  182 (183)
T ss_pred             CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence                                  2345684   35554 48888889999999999998887764

>KOG2603|consensus

Probab=98.34  E-value=5.8e-06  Score=68.66  Aligned_cols=109  Identities=17%  Similarity=0.337  Sum_probs=87.1

Q ss_pred             CCceEcChhhHHHHhcCCC----EEEEEeC----CCCHhHhhHHHHHHHHHHhcCCC------CCeEEEEeccccchhhh
Q psy14086         81 EGLVELTEESFEKYVSLGN----HFVKFYA----PWCGHCQSLAPVWQELASHFKTE------EDVSIAKIDCTQHRSIC  146 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~~----~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~------~~i~~~~vd~~~~~~~~  146 (324)
                      +++..+++++|.+++...+    .+++|.|    ..|.-|.++..+++-+|+.++..      .++-|..||.++.+++.
T Consensus        40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F  119 (331)
T KOG2603|consen   40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF  119 (331)
T ss_pred             CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence            4799999999999996543    4677777    34999999999999999998663      26899999999999999


Q ss_pred             hhCCccccceEEEEeCCeEee----eec---CCCCHHHHHHHHHhhhCCC
Q psy14086        147 QSFDIKSYPTLLWIESGKKLD----KFQ---GSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       147 ~~~~i~~~P~~~~~~~g~~~~----~~~---g~~~~~~i~~fi~~~~~~~  189 (324)
                      +.++++..|++++|.+.+...    .+.   -...+|++.+|+.+..+-.
T Consensus       120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~  169 (331)
T KOG2603|consen  120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN  169 (331)
T ss_pred             HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence            999999999999996632111    111   1245999999999987744

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.33  E-value=1.7e-05  Score=56.76  Aligned_cols=108  Identities=19%  Similarity=0.390  Sum_probs=78.2

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhcCCC-
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQEGVD-  283 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~i~-  283 (324)
                      .....|+.-+|++++.. +.++|.|=...  +.-.-...+.++|.+......++.++.+-+..   .+|.++.++|++. 
T Consensus         4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            34678889999999965 46899995432  33456778888885545566689999998865   3578999999994 


Q ss_pred             -ccceEEEEecC-eeeeee--cCCCCHHHHHHHHHhhcc
Q psy14086        284 -GFPSIYVYKNG-VRTAEY--NGSRDLEELYQFILKHKV  318 (324)
Q Consensus       284 -~~P~l~~~~~g-~~~~~~--~g~~~~~~l~~fi~~~~~  318 (324)
                       .+|.+++|..| ..+..|  .|..+.+.|.+|+.++.+
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence             79999999844 556678  888999999999998743

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.33  E-value=5.3e-06  Score=64.17  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC--------C-ccchhhhhh-cCC-----------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT--------Q-ELSKDLCNQ-EGV-----------  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~--------~-~~~~~~~~~-~~i-----------  282 (324)
                      .+++++|.||++||++|+...|.+.++..++...  ++.+..+++.        . .....+.++ +++           
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~   98 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL   98 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence            4577899999999999999999999999664433  5777777741        1 001112211 111           


Q ss_pred             ---------------Cccce----EEEE-ecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        283 ---------------DGFPS----IYVY-KNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       283 ---------------~~~P~----l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                                     .++|+    .+++ ++|+.+..+.|..+.+.|...|.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540        99 GSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence                           13674    4555 6788888899999999888888654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG1672|consensus

Probab=98.33  E-value=3.5e-06  Score=64.99  Aligned_cols=100  Identities=20%  Similarity=0.278  Sum_probs=79.9

Q ss_pred             CCeeEec-cccccccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLT-SENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~-~~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +....+. ..+|-+.+ .+..+++.||-|.-..|+-+-.+++.+|..+.    ...|.++|+..  .+-++.+++|.-+|
T Consensus        66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~----eTrFikvnae~--~PFlv~kL~IkVLP  139 (211)
T KOG1672|consen   66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV----ETRFIKVNAEK--APFLVTKLNIKVLP  139 (211)
T ss_pred             ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc----cceEEEEeccc--CceeeeeeeeeEee
Confidence            4567776 45566555 56789999999999999999999999996643    47899999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCC--------CCHHHHHHHHH
Q psy14086        287 SIYVYKNGVRTAEYNGS--------RDLEELYQFIL  314 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~--------~~~~~l~~fi~  314 (324)
                      ++++|++|..+..+.|-        .+.+.|..-|-
T Consensus       140 ~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~  175 (211)
T KOG1672|consen  140 TVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA  175 (211)
T ss_pred             eEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence            99999999877665552        44555555553

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.30  E-value=1.1e-05  Score=63.75  Aligned_cols=100  Identities=10%  Similarity=0.219  Sum_probs=69.4

Q ss_pred             ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------------
Q psy14086        219 FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------------  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------------  271 (324)
                      +.++..+++++|+||++||+.|....+.+.++..++-..  ++.++.+..+..                           
T Consensus        19 l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D   96 (171)
T cd02969          19 LADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD   96 (171)
T ss_pred             HHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence            333335678999999999999999999999999664333  577777765420                           


Q ss_pred             cchhhhhhcCCCccceEEEEe-cCeeeeee---------cCCCCHHHHHHHHHhhcccC
Q psy14086        272 LSKDLCNQEGVDGFPSIYVYK-NGVRTAEY---------NGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       272 ~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~---------~g~~~~~~l~~fi~~~~~~~  320 (324)
                      ....+.+.|++...|+++++. +|+.+...         .+..+.+++.+-|...++..
T Consensus        97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  155 (171)
T cd02969          97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK  155 (171)
T ss_pred             CchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence            123556678999999999995 66544221         12235678888888876643

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.29  E-value=7.4e-06  Score=55.05  Aligned_cols=71  Identities=27%  Similarity=0.505  Sum_probs=52.8

Q ss_pred             EeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC-CCCHHHHH
Q psy14086        232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG-SRDLEELY  310 (324)
Q Consensus       232 f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g-~~~~~~l~  310 (324)
                      +++++|+.|..+...+++++..+     ++.+-.++...  .+++ .+||+.++|++++  +|+.  .+.| .-+.++|.
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~-----~i~~ei~~~~~--~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~   72 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEEL-----GIEVEIIDIED--FEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELK   72 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHT-----TEEEEEEETTT--HHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhc-----CCeEEEEEccC--HHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHH
Confidence            36788999999999999998552     35566677755  5666 9999999999954  6754  4778 56788999


Q ss_pred             HHHH
Q psy14086        311 QFIL  314 (324)
Q Consensus       311 ~fi~  314 (324)
                      +||+
T Consensus        73 ~~l~   76 (76)
T PF13192_consen   73 ELLE   76 (76)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8874

...

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.29  E-value=3.8e-06  Score=64.89  Aligned_cols=86  Identities=27%  Similarity=0.414  Sum_probs=57.4

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhh-cC------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQ-EG------------  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~-~~------------  281 (324)
                      .+++++|.||+.||+ |+...|.++++.+++...  ++.+..++++.         .....+.++ ++            
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~   97 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVN   97 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEecc
Confidence            367899999999999 999999999999764333  57777775421         001122221 22            


Q ss_pred             -----------CCccc-----------eEEEE-ecCeeeeeecCCCCHHHHHHH
Q psy14086        282 -----------VDGFP-----------SIYVY-KNGVRTAEYNGSRDLEELYQF  312 (324)
Q Consensus       282 -----------i~~~P-----------~l~~~-~~g~~~~~~~g~~~~~~l~~f  312 (324)
                                 +.++|           +.+++ ++|+.+..+.|..+.+.|.+.
T Consensus        98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340          98 GENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             CCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence                       23456           45555 678888889998888777653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.29  E-value=3.5e-06  Score=54.22  Aligned_cols=60  Identities=33%  Similarity=0.739  Sum_probs=50.1

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh---hCCccccceEEEEeCC
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ---SFDIKSYPTLLWIESG  163 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g  163 (324)
                      ++.|++.||++|..+.+.+.++ .....  ++.+..++++.......   .+++..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 33333  69999999987766554   7899999999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.1e-05  Score=59.91  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc----------------chhhhhhCCccccceE
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ----------------HRSICQSFDIKSYPTL  157 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~----------------~~~~~~~~~i~~~P~~  157 (324)
                      ++-.+++|-++.|.+|.++...+   .++-+-+.+  .+.++.+++..                ..++++.|++++.|++
T Consensus        42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            34468999999999999987654   334444444  57777666642                2589999999999999


Q ss_pred             EEEeC-CeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        158 LWIES-GKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       158 ~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ++|+. |+.+....|...++++..-++-...+
T Consensus       120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g  151 (182)
T COG2143         120 VFFDKTGKTILELPGYMPPEQFLAVLKYVADG  151 (182)
T ss_pred             EEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            99987 67777778999999887766655443

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.28  E-value=6.6e-06  Score=67.00  Aligned_cols=84  Identities=20%  Similarity=0.313  Sum_probs=63.1

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhhcCCCccceEEEEe-cC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQEGVDGFPSIYVYK-NG  294 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~~~i~~~P~l~~~~-~g  294 (324)
                      ++--+++||.+.|+.|..+.|+++.++.++     ++.+..|+.+.         ..+..+.++++|..+|+++++. ++
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~  194 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT  194 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence            456799999999999999999999999663     34444444442         0146788899999999999885 34


Q ss_pred             -eeeeeecCCCCHHHHHHHH
Q psy14086        295 -VRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       295 -~~~~~~~g~~~~~~l~~fi  313 (324)
                       +...+-.|..+.++|.+-|
T Consensus       195 ~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  195 KKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             CeEEEEeeecCCHHHHHHhh
Confidence             3344556889998887654

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.26  E-value=5.1e-06  Score=56.01  Aligned_cols=70  Identities=19%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh-----cCCCccceEEEEecCeeeeeecCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ-----EGVDGFPSIYVYKNGVRTAEYNGS  303 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~-----~~i~~~P~l~~~~~g~~~~~~~g~  303 (324)
                      ++.|+++||++|+.+.+.+.++.         +.+-.+|++.  ++.....     +++.++|++ ++.+|....    .
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~--~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~   65 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEE--DEGAADRVVSVNNGNMTVPTV-KFADGSFLT----N   65 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcC--CHhHHHHHHHHhCCCceeCEE-EECCCeEec----C
Confidence            57899999999999999886654         3445677766  4444333     378899997 467775432    2


Q ss_pred             CCHHHHHHHHH
Q psy14086        304 RDLEELYQFIL  314 (324)
Q Consensus       304 ~~~~~l~~fi~  314 (324)
                      -+..++.+.|.
T Consensus        66 ~~~~~~~~~l~   76 (77)
T TIGR02200        66 PSAAQVKAKLQ   76 (77)
T ss_pred             CCHHHHHHHhh
Confidence            34556655543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.23  E-value=6.3e-06  Score=55.52  Aligned_cols=70  Identities=16%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh-----CCccccceEEEEeCCeEeeeecCCCCH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS-----FDIKSYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~-----~~i~~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      ++.|+++||++|+.+.+.+.++.        +.+-.+|++.+......     +++.++|++ ++.+|...    ...+.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l----~~~~~   68 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL----TNPSA   68 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe----cCCCH
Confidence            57899999999999998887653        34455677666555554     388899987 46666443    24456


Q ss_pred             HHHHHHHH
Q psy14086        176 ETLVNYVS  183 (324)
Q Consensus       176 ~~i~~fi~  183 (324)
                      .++.+.++
T Consensus        69 ~~~~~~l~   76 (77)
T TIGR02200        69 AQVKAKLQ   76 (77)
T ss_pred             HHHHHHhh
Confidence            66666553

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.22  E-value=1.5e-05  Score=60.55  Aligned_cols=86  Identities=16%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCCc
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVDG  284 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~  284 (324)
                      +++++|.|| +.||+.|....+.+.++..++...  ++.++.+..+.                   +....+.+.|++..
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  100 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG  100 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence            678999999 589999999999999988665433  46666665543                   11346677788887


Q ss_pred             c---------ceEEEEe-cCeeeeeecCCCCHHHHHHH
Q psy14086        285 F---------PSIYVYK-NGVRTAEYNGSRDLEELYQF  312 (324)
Q Consensus       285 ~---------P~l~~~~-~g~~~~~~~g~~~~~~l~~f  312 (324)
                      .         |+.+++. +|+.+..+.|..+...+.+-
T Consensus       101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~  138 (140)
T cd03017         101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV  138 (140)
T ss_pred             ccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence            7         8888885 68877788887666655543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.19  E-value=2.5e-05  Score=64.76  Aligned_cols=90  Identities=20%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------chhhhhhCCccccceEEEEeCC--eE
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------HRSICQSFDIKSYPTLLWIESG--KK  165 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~g--~~  165 (324)
                      ++--+++||...|+.|.++.|.++.++++++=  .+..+.+|...         +...++++||+.+|++++...+  +.
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            33458999999999999999999999999965  56666666542         2568899999999999999774  23


Q ss_pred             eeeecCCCCHHHHHHHHHhhhCC
Q psy14086        166 LDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       166 ~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ...-.|..+.++|.+=|...+..
T Consensus       228 ~pv~~G~iS~deL~~Ri~~v~~~  250 (256)
T TIGR02739       228 SPLAYGFISQDELKERILNVLTQ  250 (256)
T ss_pred             EEEeeccCCHHHHHHHHHHHHhc
Confidence            33346889999998887776653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.19  E-value=7.6e-06  Score=52.58  Aligned_cols=60  Identities=35%  Similarity=0.800  Sum_probs=48.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh---hcCCCccceEEEEecC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN---QEGVDGFPSIYVYKNG  294 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~i~~~P~l~~~~~g  294 (324)
                      ++.|+..||+.|..+.+.+.++. . ...  ++.+..++++.  ......   .+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~-~-~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELA-L-LNK--GVKFEAVDVDE--DPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHH-h-hCC--CcEEEEEEcCC--ChHHhhHHHhCCCccccEEEEEeCC
Confidence            47899999999999999999882 2 333  68999999887  444433   7888999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.16  E-value=1.7e-05  Score=60.32  Aligned_cols=84  Identities=12%  Similarity=0.175  Sum_probs=62.9

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhhhCCcccc
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQSFDIKSY  154 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~~~~i~~~  154 (324)
                      .++++|.|| +.||+.|....+.+.++..+++.+ ++.++.|..+                     ....+++.||+...
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            567888999 589999999999999999988642 4666655443                     12457777888877


Q ss_pred             ---------ceEEEEeC-CeEeeeecCCCCHHHHHHH
Q psy14086        155 ---------PTLLWIES-GKKLDKFQGSRTLETLVNY  181 (324)
Q Consensus       155 ---------P~~~~~~~-g~~~~~~~g~~~~~~i~~f  181 (324)
                               |+.+++++ |+....+.|....+++.+-
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~  138 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV  138 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence                     89888875 7777778888766666553

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.13  E-value=3.9e-05  Score=63.25  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------chhhhhhCCccccceEEEEeCC--eE
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------HRSICQSFDIKSYPTLLWIESG--KK  165 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~g--~~  165 (324)
                      +.--+++||.+.|++|.++.|.++.++++++=  .+..+.+|..-         +...++++||..+|++++...+  +.
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            33459999999999999999999999999965  56667777532         2446789999999999999774  33


Q ss_pred             eeeecCCCCHHHHHHHHHhhhCC
Q psy14086        166 LDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       166 ~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ...-.|..+.++|.+=|.....+
T Consensus       221 ~pv~~G~iS~deL~~Ri~~v~t~  243 (248)
T PRK13703        221 RPLSYGFITQDDLAKRFLNVSTD  243 (248)
T ss_pred             EEEeeccCCHHHHHHHHHHHHhc
Confidence            34456889999998887766553

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.12  E-value=0.00012  Score=52.50  Aligned_cols=105  Identities=19%  Similarity=0.388  Sum_probs=75.4

Q ss_pred             CCceEcChhhHHHHhcCCC-EEEEEeCCCCHhHhhHHHHHHHHH-HhcCCCCCeEEEEeccc-----cchhhhhhCCcc-
Q psy14086         81 EGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELA-SHFKTEEDVSIAKIDCT-----QHRSICQSFDIK-  152 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la-~~~~~~~~i~~~~vd~~-----~~~~~~~~~~i~-  152 (324)
                      .+...|++-+|++.+.+-. ++|-|-...  +.-.-+.+|.++| +.......+.++.|-+.     ++.+++++|+|. 
T Consensus         4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            3678899999999996665 578886543  2233466888888 55544457888888764     568999999995 


Q ss_pred             -ccceEEEEeC-CeEeeee--cCCCCHHHHHHHHHhhhC
Q psy14086        153 -SYPTLLWIES-GKKLDKF--QGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 -~~P~~~~~~~-g~~~~~~--~g~~~~~~i~~fi~~~~~  187 (324)
                       .+|.+++|.. .+...+|  .|..+.++|..|+.+..+
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence             6899999985 4566678  788999999999998754

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.11  E-value=2e-05  Score=57.08  Aligned_cols=98  Identities=10%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             EeccccccccccCCcEEEEEe----CCCChhhhhhhHhHHHHHHHhhc-CCCCeEEEEEecCCccchhhhhhcCCCc---
Q psy14086        213 SLTSENFNDVIKSGTVFIKFF----APWCGHCKRLAPTWEELGTKLLD-NKHGIVIAKVDCTQELSKDLCNQEGVDG---  284 (324)
Q Consensus       213 ~l~~~~~~~~~~~~~~~v~f~----~~~c~~C~~~~~~~~~~a~~~~~-~~~~~~~~~id~~~~~~~~~~~~~~i~~---  284 (324)
                      .++.++..... ..+.++.|+    +..-..-......+.++|++ ++ +  ++.|+.+|.+.  .....+.||+++   
T Consensus         3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~-fk~g--ki~Fv~~D~~~--~~~~l~~fgl~~~~~   76 (111)
T cd03073           3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKD-FPDR--KLNFAVADKED--FSHELEEFGLDFSGG   76 (111)
T ss_pred             eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHH-CcCC--eEEEEEEcHHH--HHHHHHHcCCCcccC
Confidence            45556655554 333344433    22323445688999999965 55 4  69999999887  666788999974   


Q ss_pred             -cceEEEEecCeeeeeecCCC-CHHHHHHHHHhh
Q psy14086        285 -FPSIYVYKNGVRTAEYNGSR-DLEELYQFILKH  316 (324)
Q Consensus       285 -~P~l~~~~~g~~~~~~~g~~-~~~~l~~fi~~~  316 (324)
                       .|+++++........+.+.. +.+.|.+|+++.
T Consensus        77 ~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          77 EKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence             99999986432332357778 999999999875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=4.1e-05  Score=56.99  Aligned_cols=86  Identities=15%  Similarity=0.285  Sum_probs=63.7

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHH---HHHHHhhcCCCCeEEEEEecCCc--------------cchhhhhhcCCCccceE
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWE---ELGTKLLDNKHGIVIAKVDCTQE--------------LSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~---~~a~~~~~~~~~~~~~~id~~~~--------------~~~~~~~~~~i~~~P~l  288 (324)
                      +-.+++|.++.|..|..+...+.   ++- +++..  ++.+..++++..              ...++++.|++++.|++
T Consensus        43 Kylllmfes~~C~yC~~~KKd~~~~krlr-Eylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          43 KYLLLMFESNGCSYCERFKKDLKNVKRLR-EYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             cEEEEEEcCCCChHHHHHHHhhcchHHHH-HHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            45899999999999999876653   232 33433  577777776540              12489999999999999


Q ss_pred             EEEe-cCeeeeeecCCCCHHHHHHHHH
Q psy14086        289 YVYK-NGVRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       289 ~~~~-~g~~~~~~~g~~~~~~l~~fi~  314 (324)
                      ++|. .|+.+....|....+++...++
T Consensus       120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         120 VFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             EEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            9995 6788777889888887665443

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.09  E-value=2.3e-05  Score=56.76  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=73.9

Q ss_pred             eeEeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHh--hcCCCCeEEEEEecCCccchhhhhhcCCCc--c
Q psy14086        211 VVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKL--LDNKHGIVIAKVDCTQELSKDLCNQEGVDG--F  285 (324)
Q Consensus       211 v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~--~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~  285 (324)
                      |++++.++...+...+ +..+.|+.+.  .-......+.++|+++  +++  ++.|+.+|.+.  .....+.||++.  +
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~--~~~~~~~fgl~~~~~   74 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKG--AINFLTADGDK--FRHPLLHLGKTPADL   74 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCc--eEEEEEEechH--hhhHHHHcCCCHhHC
Confidence            4567788887777654 4544555332  3356888899999551  333  69999999988  666889999986  9


Q ss_pred             ceEEEEecCe--eeeeecCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKNGV--RTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~g~--~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |.+++.....  ++..+.+..+.+.|.+|+.+.+.
T Consensus        75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            9999886432  33226688999999999998764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.08  E-value=3.7e-05  Score=57.02  Aligned_cols=75  Identities=21%  Similarity=0.544  Sum_probs=56.3

Q ss_pred             ccccccCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------cchhhhh
Q psy14086        219 FNDVIKSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------LSKDLCN  278 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------~~~~~~~  278 (324)
                      +.++ .+++++|.||+. ||+.|....+.+.++..++...  ++.++.+..+..                   ....+.+
T Consensus        20 l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~   96 (124)
T PF00578_consen   20 LSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAK   96 (124)
T ss_dssp             GGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHH
T ss_pred             HHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccccchhhhhhhhccccccccCcchHHHH
Confidence            4444 567899999999 9999999999999999665443  688888887651                   1236667


Q ss_pred             hcCCC------ccceEEEEecCee
Q psy14086        279 QEGVD------GFPSIYVYKNGVR  296 (324)
Q Consensus       279 ~~~i~------~~P~l~~~~~g~~  296 (324)
                      .|++.      .+|+++++..++.
T Consensus        97 ~~~~~~~~~~~~~p~~~lid~~g~  120 (124)
T PF00578_consen   97 AFGIEDEKDTLALPAVFLIDPDGK  120 (124)
T ss_dssp             HTTCEETTTSEESEEEEEEETTSB
T ss_pred             HcCCccccCCceEeEEEEECCCCE
Confidence            78887      8888888864433

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.06  E-value=3.8e-05  Score=57.12  Aligned_cols=71  Identities=20%  Similarity=0.529  Sum_probs=45.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC---CccccceEEEEeC-CeEeeee
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF---DIKSYPTLLWIES-GKKLDKF  169 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~-g~~~~~~  169 (324)
                      ..+..++.|..+||+.|.+..|.+.++++...   ++.+-.+-.+++..+...|   |.+++|++++++. |+...++
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w  114 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW  114 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence            33345888999999999999999999999864   3666655556677766655   6678999999976 5555544

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.05  E-value=4.5e-05  Score=52.51  Aligned_cols=77  Identities=18%  Similarity=0.336  Sum_probs=56.4

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCC--ccccceEEEEeCCeEeeeecCCC
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFD--IKSYPTLLWIESGKKLDKFQGSR  173 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g~~  173 (324)
                      .+++|+.+||++|+.....|+++..+++   .+.+..+|.+.+    ..+.+..+  ...+|++++  +|+.+    |  
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g--   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G--   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--
Confidence            3688999999999999999999998764   477777777654    24555455  478998764  56443    2  


Q ss_pred             CHHHHHHHHHhhhC
Q psy14086        174 TLETLVNYVSKMKG  187 (324)
Q Consensus       174 ~~~~i~~fi~~~~~  187 (324)
                      ..++|.++++..++
T Consensus        71 g~~~~~~~~~~~~~   84 (85)
T PRK11200         71 GCTDFEAYVKENLG   84 (85)
T ss_pred             CHHHHHHHHHHhcc
Confidence            45788888877653

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.05  E-value=4e-05  Score=55.89  Aligned_cols=90  Identities=7%  Similarity=0.056  Sum_probs=66.9

Q ss_pred             CCcEEEEEeCC----CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe--cC--ee
Q psy14086        225 SGTVFIKFFAP----WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK--NG--VR  296 (324)
Q Consensus       225 ~~~~~v~f~~~----~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~--~g--~~  296 (324)
                      .+.++|++|++    ||..|+..... .++. ++.+.  ++.+...|++..+..+++..++++++|+++++.  ++  ..
T Consensus        17 ~K~llVylhs~~~~~~~~fc~~~l~~-~~v~-~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v   92 (116)
T cd02991          17 LRFLLVYLHGDDHQDTDEFCRNTLCA-PEVI-EYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI   92 (116)
T ss_pred             CCEEEEEEeCCCCccHHHHHHHHcCC-HHHH-HHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence            35799999999    88888764321 2333 33433  677888898876567888999999999998882  33  23


Q ss_pred             eeeecCCCCHHHHHHHHHhhcc
Q psy14086        297 TAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       297 ~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +.+..|..+.++|...|.....
T Consensus        93 v~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHh
Confidence            6678999999999999987654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.02  E-value=3.3e-05  Score=57.27  Aligned_cols=70  Identities=23%  Similarity=0.520  Sum_probs=55.1

Q ss_pred             cCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---------------------hhhhhhCCcc-
Q psy14086         96 SLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---------------------RSICQSFDIK-  152 (324)
Q Consensus        96 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---------------------~~~~~~~~i~-  152 (324)
                      .+++.+|.||+. ||+.|....+.+.++..+++.. ++.++.|..+..                     ..+++.|++. 
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  102 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED  102 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence            456789999999 9999999999999999998853 577777665422                     4677778888 


Q ss_pred             -----ccceEEEEeCCeEe
Q psy14086        153 -----SYPTLLWIESGKKL  166 (324)
Q Consensus       153 -----~~P~~~~~~~g~~~  166 (324)
                           ..|++++++++..+
T Consensus       103 ~~~~~~~p~~~lid~~g~I  121 (124)
T PF00578_consen  103 EKDTLALPAVFLIDPDGKI  121 (124)
T ss_dssp             TTTSEESEEEEEEETTSBE
T ss_pred             ccCCceEeEEEEECCCCEE
Confidence                 78999888875443

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.02  E-value=6.8e-05  Score=61.85  Aligned_cols=94  Identities=13%  Similarity=0.119  Sum_probs=66.5

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------cchhhhhhcCCCccceEEEEec-C-e
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------LSKDLCNQEGVDGFPSIYVYKN-G-V  295 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~~i~~~P~l~~~~~-g-~  295 (324)
                      ++--+++||.+.|+.|..+.|+++.++.+ +.-  .+..+.+|....       .+....++++|+.+|+++++.. + +
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~-yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~  219 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDT-YGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS  219 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHH-hCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence            34679999999999999999999999965 322  344455554220       0223456899999999999853 3 3


Q ss_pred             eeeeecCCCCHHHHHHHHHhhcccCC
Q psy14086        296 RTAEYNGSRDLEELYQFILKHKVESH  321 (324)
Q Consensus       296 ~~~~~~g~~~~~~l~~fi~~~~~~~~  321 (324)
                      ...+-.|..+.++|.+-|.......+
T Consensus       220 ~~pv~~G~iS~deL~~Ri~~v~t~~~  245 (248)
T PRK13703        220 VRPLSYGFITQDDLAKRFLNVSTDFK  245 (248)
T ss_pred             EEEEeeccCCHHHHHHHHHHHHhccC
Confidence            33344688999999888876655444

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.00  E-value=6e-05  Score=54.99  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             CCCEEEEEeCC----CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEe---C-CeEe
Q psy14086         97 LGNHFVKFYAP----WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIE---S-GKKL  166 (324)
Q Consensus        97 ~~~~~v~f~~~----~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~---~-g~~~  166 (324)
                      .+.++|+++++    ||..|+... .=.++.+-+..  ++.+...|+.  +...++..++++++|++.++.   + .+.+
T Consensus        17 ~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv   93 (116)
T cd02991          17 LRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV   93 (116)
T ss_pred             CCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence            44578999999    888886653 11233333333  6888888876  446799999999999998883   2 2346


Q ss_pred             eeecCCCCHHHHHHHHHhhhC
Q psy14086        167 DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       167 ~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .+..|..+++++...++....
T Consensus        94 ~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          94 GRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEeCCCCHHHHHHHHHHHHh
Confidence            678999999999999987764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.00  E-value=2.5e-05  Score=58.14  Aligned_cols=82  Identities=20%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh---cCCCccceEEEEe-cCeeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ---EGVDGFPSIYVYK-NGVRTAEY  300 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~---~~i~~~P~l~~~~-~g~~~~~~  300 (324)
                      .+..++.|..+|||+|....|.+.+++.. . .  ++.+-.+.-+.  +.++...   .|...+|+++++. +|+....+
T Consensus        41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~-~-p--~i~~~~i~rd~--~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w  114 (129)
T PF14595_consen   41 KPYNILVITETWCGDCARNVPVLAKIAEA-N-P--NIEVRIILRDE--NKELMDQYLTNGGRSIPTFIFLDKDGKELGRW  114 (129)
T ss_dssp             S-EEEEEE--TT-HHHHHHHHHHHHHHHH---T--TEEEEEE-HHH--HHHHTTTTTT-SS--SSEEEEE-TT--EEEEE
T ss_pred             CCcEEEEEECCCchhHHHHHHHHHHHHHh-C-C--CCeEEEEEecC--ChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE
Confidence            34578889999999999999999999943 2 2  45555555444  5555544   4567899999995 56666555


Q ss_pred             cCCCCHHHHHHHHH
Q psy14086        301 NGSRDLEELYQFIL  314 (324)
Q Consensus       301 ~g~~~~~~l~~fi~  314 (324)
                       |++ +..+.+++.
T Consensus       115 -ger-P~~~~~~~~  126 (129)
T PF14595_consen  115 -GER-PKEVQELVD  126 (129)
T ss_dssp             -ESS--HHHH----
T ss_pred             -cCC-CHHHhhccc
Confidence             443 455555554

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.99  E-value=4.4e-05  Score=55.46  Aligned_cols=66  Identities=20%  Similarity=0.475  Sum_probs=44.8

Q ss_pred             CCEEEEEeC-------CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-------hhhh--hCCccccceEEEEe
Q psy14086         98 GNHFVKFYA-------PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-------SICQ--SFDIKSYPTLLWIE  161 (324)
Q Consensus        98 ~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-------~~~~--~~~i~~~P~~~~~~  161 (324)
                      ++++|+|++       +||+.|....|.++++-.....  +..|+.+.+...+       .+-.  .++|+++||++-+.
T Consensus        20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~   97 (119)
T PF06110_consen   20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE   97 (119)
T ss_dssp             SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred             CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence            467888885       6999999999999998888665  6788877764221       2333  58999999999987


Q ss_pred             CCeE
Q psy14086        162 SGKK  165 (324)
Q Consensus       162 ~g~~  165 (324)
                      .++.
T Consensus        98 ~~~r  101 (119)
T PF06110_consen   98 TGER  101 (119)
T ss_dssp             SS-E
T ss_pred             CCCc
Confidence            7633

; PDB: 1V9W_A 1WOU_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.99  E-value=8.3e-05  Score=61.73  Aligned_cols=91  Identities=16%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------cchhhhhhcCCCccceEEEEe-cC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------LSKDLCNQEGVDGFPSIYVYK-NG  294 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~i~~~P~l~~~~-~g  294 (324)
                      ++--+++||.+.|+.|..+.|+++.++.++     ++.+..|+.+..         .+...+++++++.+|++++.. ++
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t  224 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS  224 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence            346899999999999999999999999663     344444444431         124567899999999998885 33


Q ss_pred             ee-eeeecCCCCHHHHHHHHHhhcccC
Q psy14086        295 VR-TAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       295 ~~-~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      +. ..+=.|..+.++|.+-|.......
T Consensus       225 ~~~~pv~~G~iS~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       225 QKMSPLAYGFISQDELKERILNVLTQF  251 (256)
T ss_pred             CcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence            33 334458899999988887665543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.99  E-value=8.8e-05  Score=59.13  Aligned_cols=92  Identities=16%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             CCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---cc--c-h---hh-hhh--------------
Q psy14086        225 SGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---EL--S-K---DL-CNQ--------------  279 (324)
Q Consensus       225 ~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~--~-~---~~-~~~--------------  279 (324)
                      +++ +++.+|+.||++|+...|.++++.+++...  ++.+..++++.   .+  . .   .+ .++              
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~  117 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVN  117 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecC
Confidence            454 456679999999999999999999775333  57777776431   00  0 0   00 111              


Q ss_pred             ----------------------cCCCccce---EEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        280 ----------------------EGVDGFPS---IYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       280 ----------------------~~i~~~P~---l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                            +++.++|+   .+++ ++|+.+..+.|..+.+.+.+.|.+.++
T Consensus       118 g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~  182 (183)
T PTZ00256        118 GENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN  182 (183)
T ss_pred             CCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence                                  13446784   3444 678888888899888888888887654

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.98  E-value=7.4e-05  Score=57.34  Aligned_cols=49  Identities=14%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             HHhcCCCEEEEE-eCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc
Q psy14086         93 KYVSLGNHFVKF-YAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH  142 (324)
Q Consensus        93 ~~~~~~~~~v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~  142 (324)
                      ++..+++++|.| ++.||+.|+...+.+.++..++... .+.++.|..+..
T Consensus        19 ~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~   68 (149)
T cd02970          19 ALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP   68 (149)
T ss_pred             HHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH
Confidence            334445665555 5999999999999999999999642 577787776533

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.97  E-value=3.5e-05  Score=55.97  Aligned_cols=83  Identities=17%  Similarity=0.352  Sum_probs=49.4

Q ss_pred             CcEEEEEeC-------CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----ccchhhhh--hcCCCccceEEEE
Q psy14086        226 GTVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----ELSKDLCN--QEGVDGFPSIYVY  291 (324)
Q Consensus       226 ~~~~v~f~~-------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~~~~~~~~--~~~i~~~P~l~~~  291 (324)
                      ++++|+|++       +||++|+...|.++++... ...  +..++.+.+..     ..+..+..  .++++++|||+-+
T Consensus        20 ~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~   96 (119)
T PF06110_consen   20 KPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW   96 (119)
T ss_dssp             SEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred             CeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence            578888876       5999999999999987744 333  56777776643     11234444  5899999999988


Q ss_pred             ecCeeeeeecCC--CCHHHHHHHHH
Q psy14086        292 KNGVRTAEYNGS--RDLEELYQFIL  314 (324)
Q Consensus       292 ~~g~~~~~~~g~--~~~~~l~~fi~  314 (324)
                      ..+++   +.+.  .+.+-|..|+.
T Consensus        97 ~~~~r---L~e~e~~~~~lv~~~~e  118 (119)
T PF06110_consen   97 ETGER---LVEEECLNEDLVEMFFE  118 (119)
T ss_dssp             TSS-E---EEHHHHH-HHHHHHHHH
T ss_pred             CCCCc---cchhhhccHHHHHHHhc
Confidence            77644   2322  34455555543

; PDB: 1V9W_A 1WOU_A.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.96  E-value=4e-05  Score=54.30  Aligned_cols=91  Identities=19%  Similarity=0.394  Sum_probs=71.4

Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCH---hHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCG---HCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~---~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +...++.++++.++......|.|++..|.   .+....-++-++.+.|.+  .+..+.+.-..+..+..+||+..+|+++
T Consensus        10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaLv   87 (107)
T PF07449_consen   10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPALV   87 (107)
T ss_dssp             TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred             CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeEE
Confidence            67888999999999777767777776654   445555688889999988  7888887767888999999999999999


Q ss_pred             EEeCCeEeeeecCCCC
Q psy14086        159 WIESGKKLDKFQGSRT  174 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~  174 (324)
                      ++++|+......|-++
T Consensus        88 f~R~g~~lG~i~gi~d  103 (107)
T PF07449_consen   88 FFRDGRYLGAIEGIRD  103 (107)
T ss_dssp             EEETTEEEEEEESSST
T ss_pred             EEECCEEEEEecCeec
Confidence            9999988776666554

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.96  E-value=7.9e-05  Score=58.90  Aligned_cols=89  Identities=10%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~~  147 (324)
                      .+.++|.|| +.||+.|....+.+++++++|... ++.++.|..+.                            ...+++
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            456788999 899999999999999999999752 45555554331                            134556


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                      .||+.      ..|+.+++++ |.....+.+    ..+.++|.+.|+...
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~  157 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ  157 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            67775      4678888876 655555533    246778888887653

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.95  E-value=8.4e-05  Score=57.02  Aligned_cols=47  Identities=19%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             cccCCcEEEEE-eCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086        222 VIKSGTVFIKF-FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ  270 (324)
Q Consensus       222 ~~~~~~~~v~f-~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~  270 (324)
                      ...+++++|.| ++.||+.|+...+.+.++..++...  ++.++.|+.+.
T Consensus        20 ~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~   67 (149)
T cd02970          20 LLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPES   67 (149)
T ss_pred             HhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCC
Confidence            33345555555 5899999999999999999665433  57777777665

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.95  E-value=0.00014  Score=57.55  Aligned_cols=91  Identities=12%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .++.++|.|| +.||+.|....+.+++++.++...  ++.+..|+.+..                          ....+
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~  105 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI  105 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence            3568899999 799999999999999998775443  455555554431                          12245


Q ss_pred             hhhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHhh
Q psy14086        277 CNQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILKH  316 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~~  316 (324)
                      .+.|++.      ..|+.+++. +|+....+.+    ..+.+++.+.|+..
T Consensus       106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            5667775      467888885 6766555533    24677888888654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.94  E-value=0.00014  Score=51.39  Aligned_cols=87  Identities=15%  Similarity=0.302  Sum_probs=66.8

Q ss_pred             hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-eEe
Q psy14086         89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-KKL  166 (324)
Q Consensus        89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-~~~  166 (324)
                      +.++.++ ....++|.|+..++.+   ....|.++|..++.  .+.|+.+.   +..+++.+++. .|++++|++. ...
T Consensus         8 ~~l~~~~~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~--~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~   78 (97)
T cd02981           8 EELEKFLDKDDVVVVGFFKDEESE---EYKTFEKVAESLRD--DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEP   78 (97)
T ss_pred             HHHHHHhccCCeEEEEEECCCCcH---HHHHHHHHHHhccc--CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCC
Confidence            4455555 3446788999998773   67899999999987  68898765   45677777775 5889999773 455


Q ss_pred             eeecCCCCHHHHHHHHHh
Q psy14086        167 DKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       167 ~~~~g~~~~~~i~~fi~~  184 (324)
                      ..|.|..+.++|.+||..
T Consensus        79 ~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          79 VEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             ccCCCCCCHHHHHHHHHh
Confidence            569999999999999974

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.94  E-value=2.3e-05  Score=53.77  Aligned_cols=58  Identities=17%  Similarity=0.382  Sum_probs=43.4

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-----hhhhhCCccccceEEEEeCCe
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-----SICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      ++.|+++||++|..+.+.+.++.  ...  .+.+..+|.+.+.     .+.+.+|+.++|++++  +|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            47899999999999999999977  322  4777777765432     3666779999998743  453

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.92  E-value=8.5e-05  Score=52.50  Aligned_cols=85  Identities=20%  Similarity=0.299  Sum_probs=63.3

Q ss_pred             ccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC-ee
Q psy14086        219 FNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG-VR  296 (324)
Q Consensus       219 ~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g-~~  296 (324)
                      ++.++.. +.++|-|+..+|+   .....|.++|.. ++.  .+.|+.+.     +.++.+++++. -|++++|+.. ..
T Consensus        10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~-~r~--~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~~   77 (97)
T cd02981          10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAES-LRD--DYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEEE   77 (97)
T ss_pred             HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHh-ccc--CCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcccC
Confidence            5555544 5688889988877   467888899955 544  47888766     46777777775 5899999764 44


Q ss_pred             eeeecCCCCHHHHHHHHHh
Q psy14086        297 TAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       297 ~~~~~g~~~~~~l~~fi~~  315 (324)
                      ...|.|..+.+.|.+||..
T Consensus        78 ~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          78 PVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             CccCCCCCCHHHHHHHHHh
Confidence            5679999889999999975

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.87  E-value=0.00015  Score=56.88  Aligned_cols=84  Identities=7%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             cCCCEEEEEeCCC-CHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPW-CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i  151 (324)
                      ..+.++|.||+.| |++|....+.++++++++.   ++.++.|..+.                       ...+++.||+
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv  119 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV  119 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence            3557899999999 9999999999999999984   35565554431                       1256667777


Q ss_pred             cccc---------eEEEEeC-CeEeeeecC-----CCCHHHHHHHH
Q psy14086        152 KSYP---------TLLWIES-GKKLDKFQG-----SRTLETLVNYV  182 (324)
Q Consensus       152 ~~~P---------~~~~~~~-g~~~~~~~g-----~~~~~~i~~fi  182 (324)
                      ...|         +.++++. |.....+.+     ....+.+.+++
T Consensus       120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l  165 (167)
T PRK00522        120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL  165 (167)
T ss_pred             eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence            6555         6677764 554443322     23455665555

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.86  E-value=0.00036  Score=53.96  Aligned_cols=83  Identities=14%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             cCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCC
Q psy14086        224 KSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVD  283 (324)
Q Consensus       224 ~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~  283 (324)
                      .+++++|.||+. ||+.|....+.+.++..++...  ++.++.|+.+.                   +....+.+.|++.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  106 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW  106 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence            467899999976 6778999999998888664433  46666666544                   1123566777775


Q ss_pred             cc------------ceEEEE-ecCeeeeeecCCCCHHH
Q psy14086        284 GF------------PSIYVY-KNGVRTAEYNGSRDLEE  308 (324)
Q Consensus       284 ~~------------P~l~~~-~~g~~~~~~~g~~~~~~  308 (324)
                      ..            |+.+++ ++|+.+..|.|....+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~  144 (154)
T PRK09437        107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH  144 (154)
T ss_pred             cccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence            43            566677 57888778887644444

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.85  E-value=0.00015  Score=49.86  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=56.0

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcC--CCccceEEEEecCeeeeeecCC
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEG--VDGFPSIYVYKNGVRTAEYNGS  303 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~--i~~~P~l~~~~~g~~~~~~~g~  303 (324)
                      -+++|+.+||+.|+.....|+++..+ + .  ++.+..+|.+..  +..++.+..+  ...+|+++  .+|+.+    | 
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~-~-~--~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i----g-   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEE-R-D--DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI----G-   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccc-c-c--CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE----c-
Confidence            36789999999999999999999843 2 2  577888887761  1234554444  47899984  466543    3 


Q ss_pred             CCHHHHHHHHHhhcc
Q psy14086        304 RDLEELYQFILKHKV  318 (324)
Q Consensus       304 ~~~~~l~~fi~~~~~  318 (324)
                       ..++|.++++.+++
T Consensus        71 -g~~~~~~~~~~~~~   84 (85)
T PRK11200         71 -GCTDFEAYVKENLG   84 (85)
T ss_pred             -CHHHHHHHHHHhcc
Confidence             25888888887654

>KOG2603|consensus

Probab=97.85  E-value=0.00029  Score=58.81  Aligned_cols=108  Identities=15%  Similarity=0.362  Sum_probs=83.1

Q ss_pred             CCeeEeccccccccccCC----cEEEEEeCC----CChhhhhhhHhHHHHHHHhhcCC-----CCeEEEEEecCCccchh
Q psy14086        209 EPVVSLTSENFNDVIKSG----TVFIKFFAP----WCGHCKRLAPTWEELGTKLLDNK-----HGIVIAKVDCTQELSKD  275 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~----~~~v~f~~~----~c~~C~~~~~~~~~~a~~~~~~~-----~~~~~~~id~~~~~~~~  275 (324)
                      ..|..+++++|..++...    -.+|+|.|.    .|.-|+.....++-+|+.++...     .++-|+.+|.++  .++
T Consensus        40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e--~p~  117 (331)
T KOG2603|consen   40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE--SPQ  117 (331)
T ss_pred             CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc--cHH
Confidence            679999999999999653    267777764    49999999999999997654332     258899999999  899


Q ss_pred             hhhhcCCCccceEEEEe--cCeee--eeecC---CCCHHHHHHHHHhhcc
Q psy14086        276 LCNQEGVDGFPSIYVYK--NGVRT--AEYNG---SRDLEELYQFILKHKV  318 (324)
Q Consensus       276 ~~~~~~i~~~P~l~~~~--~g~~~--~~~~g---~~~~~~l~~fi~~~~~  318 (324)
                      +.+.++++++|++++|+  .|++.  ..+.+   ....|.+.+|+.+..+
T Consensus       118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            99999999999999993  23321  12222   1348999999988754

>TIGR03137 AhpC peroxiredoxin

Probab=97.83  E-value=0.00021  Score=57.20  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------cchhhhhhC
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------QHRSICQSF  149 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------~~~~~~~~~  149 (324)
                      ..++++|.|| +.||+.|....+.+.++..++... .+.++.|.++                         ....+++.|
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~  108 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF  108 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence            3556789999 999999999999999999998643 3444443322                         124677788


Q ss_pred             Ccc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086        150 DIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       150 ~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                      |+.      ..|+.++++. |.....+.+    ....+++.+.|+..
T Consensus       109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            886      3588888875 655544422    25788888887544

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK15000 peroxidase; Provisional

Probab=97.80  E-value=0.00033  Score=56.61  Aligned_cols=93  Identities=12%  Similarity=0.307  Sum_probs=65.1

Q ss_pred             ccccCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cc
Q psy14086        221 DVIKSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LS  273 (324)
Q Consensus       221 ~~~~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~  273 (324)
                      +...++.++|.||.. ||+.|....+.+.+++.++...  ++.+..++++..                          ..
T Consensus        30 ~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~  107 (200)
T PRK15000         30 QHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK  107 (200)
T ss_pred             HHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence            333467899999995 8999999999999998775434  455665655531                          12


Q ss_pred             hhhhhhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        274 KDLCNQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       274 ~~~~~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      ..+++.|++.      .+|+.+++. +|+....+.|    .++.+++.+.|+.
T Consensus       108 ~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        108 REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            2555667876      689888885 7766554444    2688999998865

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.80  E-value=0.0002  Score=49.20  Aligned_cols=94  Identities=20%  Similarity=0.411  Sum_probs=71.7

Q ss_pred             hhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCcc----ccc-eEEE
Q psy14086         88 EESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIK----SYP-TLLW  159 (324)
Q Consensus        88 ~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~----~~P-~~~~  159 (324)
                      -.+|.+++.. +.+++.|..+- ..-......+.++|...+|  .-.++.|||..  .+.+|+++.+.    .-| .+.-
T Consensus         9 ~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH   85 (112)
T cd03067           9 HKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH   85 (112)
T ss_pred             hHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence            3678887744 45667666554 3334456699999999999  67778888875  78999999998    445 4567


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      |++|.-...|.-..+...|+.|+++
T Consensus        86 YKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          86 YKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             ccCCCccccccchhhHHHHHHHhhC
Confidence            7888877788889999999999975

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.80  E-value=0.00035  Score=53.59  Aligned_cols=76  Identities=13%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             CcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccc--hhhhhhcCCC
Q psy14086        226 GTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELS--KDLCNQEGVD  283 (324)
Q Consensus       226 ~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~--~~~~~~~~i~  283 (324)
                      ++++|.|| +.||+.|....|.+.++..++...  ++.++.++.+.                   +..  ..+.+.|++.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~  106 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF  106 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence            67777777 899999999999999998664333  56666666543                   112  3456677776


Q ss_pred             ----cc--ceEEEE-ecCeeeeeecCC
Q psy14086        284 ----GF--PSIYVY-KNGVRTAEYNGS  303 (324)
Q Consensus       284 ----~~--P~l~~~-~~g~~~~~~~g~  303 (324)
                          +.  |+.+++ ++|+....+.|.
T Consensus       107 ~~~~~~~~~~~~lid~~G~v~~~~~~~  133 (149)
T cd03018         107 DEDLGVAERAVFVIDRDGIIRYAWVSD  133 (149)
T ss_pred             cccCCCccceEEEECCCCEEEEEEecC
Confidence                23  366777 467766556554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.79  E-value=5.1e-05  Score=52.00  Aligned_cols=72  Identities=19%  Similarity=0.362  Sum_probs=48.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      ++.|+++||++|+.+.+.++++.   ...  .+.+..++.+.. ..    .+.+.+++.++|++  |-+|+.+    |. 
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~---i~~--~~~~~~v~~~~~-~~~~~~~l~~~~g~~~vP~v--~i~g~~i----gg-   67 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN---VKP--AYEVVELDQLSN-GSEIQDYLEEITGQRTVPNI--FINGKFI----GG-   67 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC---CCC--CCEEEEeeCCCC-hHHHHHHHHHHhCCCCCCeE--EECCEEE----cC-
Confidence            47899999999999999998876   221  366777776541 11    25566788899998  4466433    22 


Q ss_pred             CHHHHHHHHH
Q psy14086        305 DLEELYQFIL  314 (324)
Q Consensus       305 ~~~~l~~fi~  314 (324)
                       .+++.+...
T Consensus        68 -~~~~~~~~~   76 (84)
T TIGR02180        68 -CSDLLALYK   76 (84)
T ss_pred             -HHHHHHHHH
Confidence             355555544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR03137 AhpC peroxiredoxin

Probab=97.77  E-value=0.00037  Score=55.77  Aligned_cols=90  Identities=21%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~  279 (324)
                      .+++++|.|| +.||+.|....+.+.++..++...  ++.+..++.+..                       ....+++.
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~  107 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN  107 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence            3568999999 999999999999999988665433  344444443320                       12356677


Q ss_pred             cCCC------ccceEEEE-ecCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        280 EGVD------GFPSIYVY-KNGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       280 ~~i~------~~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      |++.      ..|+.+++ ++|.....+.+    .+..+++.+.|+.
T Consensus       108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            8875      35888888 47776544322    2577888887753

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK15000 peroxidase; Provisional

Probab=97.77  E-value=0.00025  Score=57.24  Aligned_cols=96  Identities=14%  Similarity=0.292  Sum_probs=67.1

Q ss_pred             hHHHHhcCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------
Q psy14086         90 SFEKYVSLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------  140 (324)
Q Consensus        90 ~f~~~~~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------  140 (324)
                      ++.+....+.+++.||+. ||+.|....+.|.+++.+|+.. ++.++.+.++                            
T Consensus        27 ~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD  105 (200)
T PRK15000         27 NFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVAD  105 (200)
T ss_pred             eHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEEC
Confidence            444444566778999994 8999999999999999999753 3555544443                            


Q ss_pred             cchhhhhhCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        141 QHRSICQSFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       141 ~~~~~~~~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                      ....+++.||+.      ..|+.+++++ |.....+.+    .++.+++.+.++.+.
T Consensus       106 ~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~  162 (200)
T PRK15000        106 VKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ  162 (200)
T ss_pred             CCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            123456667876      5899999985 655444443    368888888887643

>KOG3425|consensus

Probab=97.74  E-value=0.00012  Score=52.03  Aligned_cols=65  Identities=18%  Similarity=0.464  Sum_probs=49.5

Q ss_pred             CcEEEEEeC--------CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----ccchhhhhhcCC-CccceEEEE
Q psy14086        226 GTVFIKFFA--------PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----ELSKDLCNQEGV-DGFPSIYVY  291 (324)
Q Consensus       226 ~~~~v~f~~--------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~~~~~~~~~~~i-~~~P~l~~~  291 (324)
                      +.++|.|++        +||+.|.+..|.+.++-+ ....  ++.|+.+++..     ..+..+....++ +++|||+=+
T Consensus        26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk-~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw  102 (128)
T KOG3425|consen   26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALK-HAPE--DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW  102 (128)
T ss_pred             ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHH-hCCC--ceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence            458888876        699999999999999884 3444  68999988765     123456666777 899999877


Q ss_pred             ec
Q psy14086        292 KN  293 (324)
Q Consensus       292 ~~  293 (324)
                      +.
T Consensus       103 ~~  104 (128)
T KOG3425|consen  103 KR  104 (128)
T ss_pred             cC
Confidence            64

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.73  E-value=0.00037  Score=53.91  Aligned_cols=81  Identities=17%  Similarity=0.222  Sum_probs=56.3

Q ss_pred             cCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------chhhhhhCCccc
Q psy14086         96 SLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------HRSICQSFDIKS  153 (324)
Q Consensus        96 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~~~~~~~~~i~~  153 (324)
                      ..++++|.||+. ||+.|....+.+.++.++++++ ++.++.|..+.                     ...+.+.||+..
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG  107 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence            456789999975 6888999999999999988653 46666665532                     245667777754


Q ss_pred             c------------ceEEEEe-CCeEeeeecCCCCHHH
Q psy14086        154 Y------------PTLLWIE-SGKKLDKFQGSRTLET  177 (324)
Q Consensus       154 ~------------P~~~~~~-~g~~~~~~~g~~~~~~  177 (324)
                      .            |+.++++ +|.....|.|....+.
T Consensus       108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~  144 (154)
T PRK09437        108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH  144 (154)
T ss_pred             ccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence            3            5667776 4777777877654444

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.71  E-value=0.00016  Score=54.98  Aligned_cols=44  Identities=16%  Similarity=0.226  Sum_probs=36.1

Q ss_pred             cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCCC--CeEEEEecc
Q psy14086         96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTEE--DVSIAKIDC  139 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~~--~i~~~~vd~  139 (324)
                      ..+.++|.||++||++ |....+.++++..+++...  ++.++.|..
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~   67 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV   67 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence            4567899999999998 9999999999999997642  477776654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.69  E-value=0.00021  Score=50.68  Aligned_cols=92  Identities=18%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             CCeeEeccccccccccCCcEEEEEeCCCChhhhh---hhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKR---LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~---~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      .....++..+++.++......|.|.+..|..+.+   ..-++=++. +.+..  .+..+.+.-..  ...+..+|++..+
T Consensus         9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~-~af~~--~~~~avv~~~~--e~~L~~r~gv~~~   83 (107)
T PF07449_consen    9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELV-KAFPG--RFRGAVVARAA--ERALAARFGVRRW   83 (107)
T ss_dssp             -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHH-CTSTT--SEEEEEEEHHH--HHHHHHHHT-TSS
T ss_pred             cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHH-HhhhC--ccceEEECchh--HHHHHHHhCCccC
Confidence            3578888999999997765555666665554444   444666676 33555  56666666444  6899999999999


Q ss_pred             ceEEEEecCeeeeeecCCCC
Q psy14086        286 PSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~  305 (324)
                      |++++|++|+......|.++
T Consensus        84 PaLvf~R~g~~lG~i~gi~d  103 (107)
T PF07449_consen   84 PALVFFRDGRYLGAIEGIRD  103 (107)
T ss_dssp             SEEEEEETTEEEEEEESSST
T ss_pred             CeEEEEECCEEEEEecCeec
Confidence            99999999998877777654

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.67  E-value=0.00057  Score=53.61  Aligned_cols=87  Identities=13%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             cCCcEEEEEeCCC-ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFFAPW-CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~  281 (324)
                      .++.++|.||+.| |++|....+.+++++.+ +.   ++.++.++.+..                     ....+++.||
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~-~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g  118 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAE-LD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG  118 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHH-cC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence            4568999999999 99999999999999866 32   466666665540                     1125677888


Q ss_pred             CCccc---------eEEEEe-cCeeeeeecC-----CCCHHHHHHHHH
Q psy14086        282 VDGFP---------SIYVYK-NGVRTAEYNG-----SRDLEELYQFIL  314 (324)
Q Consensus       282 i~~~P---------~l~~~~-~g~~~~~~~g-----~~~~~~l~~fi~  314 (324)
                      +...|         +.+++. +|+.+..+.+     ....+++.++|+
T Consensus       119 v~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~  166 (167)
T PRK00522        119 VAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK  166 (167)
T ss_pred             CeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence            87666         777774 6765544422     135667766654

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.66  E-value=0.00042  Score=56.12  Aligned_cols=86  Identities=8%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhhCCcc-
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQSFDIK-  152 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~~~i~-  152 (324)
                      ++.|++.||+.|....+.+.++..+|+.. ++.++.+.++                           ....+++.||+. 
T Consensus        32 L~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~  110 (202)
T PRK13190         32 LFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID  110 (202)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc
Confidence            34689999999999999999999988642 3444444332                           235677778874 


Q ss_pred             -----ccceEEEEeC-CeEeeee----cCCCCHHHHHHHHHhhhC
Q psy14086        153 -----SYPTLLWIES-GKKLDKF----QGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 -----~~P~~~~~~~-g~~~~~~----~g~~~~~~i~~fi~~~~~  187 (324)
                           .+|+.+++++ |......    .+.++.+++.+.|+.+..
T Consensus       111 ~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~  155 (202)
T PRK13190        111 ENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV  155 (202)
T ss_pred             ccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence                 4799999986 4333222    345799999998887654

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.66  E-value=0.0005  Score=52.75  Aligned_cols=74  Identities=8%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------c--hhhhhhCCccc
Q psy14086         98 GNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------H--RSICQSFDIKS  153 (324)
Q Consensus        98 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~--~~~~~~~~i~~  153 (324)
                      +++++.|| ++||+.|....+.+++++++++.. ++.++.|..+.                     .  ..+.+.||+..
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~  107 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD  107 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence            56677777 899999999999999999999642 46666655432                     1  34556666652


Q ss_pred             ------cceEEEEeC-CeEeeeecCC
Q psy14086        154 ------YPTLLWIES-GKKLDKFQGS  172 (324)
Q Consensus       154 ------~P~~~~~~~-g~~~~~~~g~  172 (324)
                            .|+.++++. |+....+.|.
T Consensus       108 ~~~~~~~~~~~lid~~G~v~~~~~~~  133 (149)
T cd03018         108 EDLGVAERAVFVIDRDGIIRYAWVSD  133 (149)
T ss_pred             ccCCCccceEEEECCCCEEEEEEecC
Confidence                  236667764 6555555553

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.65  E-value=0.00053  Score=52.63  Aligned_cols=97  Identities=16%  Similarity=0.355  Sum_probs=60.1

Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHH-HH--HHHHHhcCCCCCe
Q psy14086         57 TLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAP-VW--QELASHFKTEEDV  132 (324)
Q Consensus        57 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~i  132 (324)
                      +-..|++++...           +-.=...+++.|+... ++++++|.++++||..|..+.. .|  .+++..+..  .+
T Consensus         7 ~~Spyl~~ha~~-----------~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~F   73 (163)
T PF03190_consen    7 SKSPYLRQHAHN-----------PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NF   73 (163)
T ss_dssp             ---HHHHTTTTS-----------SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-
T ss_pred             CCCHHHHHhccC-----------CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CE
Confidence            345577777654           1123566778887766 5668999999999999998875 23  356666654  68


Q ss_pred             EEEEeccccchhhhhhC--------CccccceEEEEeC-CeEe
Q psy14086        133 SIAKIDCTQHRSICQSF--------DIKSYPTLLWIES-GKKL  166 (324)
Q Consensus       133 ~~~~vd~~~~~~~~~~~--------~i~~~P~~~~~~~-g~~~  166 (324)
                      .-++||.++.+++...|        |..++|+.+++.+ |+..
T Consensus        74 I~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~  116 (163)
T PF03190_consen   74 IPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF  116 (163)
T ss_dssp             EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred             EEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence            88999999999998887        7789999999987 5443

; PDB: 3IRA_A.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.62  E-value=0.0011  Score=52.92  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=61.9

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhhc
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQE  280 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~~  280 (324)
                      ++++++.|| +.||+.|....+.+.++..++...  ++.+..++.+..                       .+..+++.|
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y  108 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  108 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence            467899999 999999999999999988664333  344555554431                       134677888


Q ss_pred             CC----Ccc--ceEEEEe-cCeeeeeec----CCCCHHHHHHHHHh
Q psy14086        281 GV----DGF--PSIYVYK-NGVRTAEYN----GSRDLEELYQFILK  315 (324)
Q Consensus       281 ~i----~~~--P~l~~~~-~g~~~~~~~----g~~~~~~l~~fi~~  315 (324)
                      |+    .++  |+.+++. +|+....+.    ..++.+++.+.|+.
T Consensus       109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a  154 (187)
T PRK10382        109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  154 (187)
T ss_pred             CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence            87    355  8888885 776543322    23688999998864

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.61  E-value=0.00044  Score=57.20  Aligned_cols=81  Identities=26%  Similarity=0.385  Sum_probs=57.7

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEE--ec----------------CC-----------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV--DC----------------TQ-----------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~i--d~----------------~~-----------------  270 (324)
                      +..++.|..+.|++|+.+.+.+.++...      ++.+..+  ..                ..                 
T Consensus       108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~  181 (232)
T PRK10877        108 KHVITVFTDITCGYCHKLHEQMKDYNAL------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP  181 (232)
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHhcC------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence            4689999999999999998888776521      1121111  10                00                 


Q ss_pred             -------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        271 -------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       271 -------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                             ..+.++++++||++.|+++ +.+|+.+   .|..+.+.|.++|.+.
T Consensus       182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence                   1234778889999999998 6788554   7888999999999764

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.61  E-value=0.00061  Score=56.34  Aligned_cols=80  Identities=15%  Similarity=0.350  Sum_probs=57.5

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEE------------------------------------------E
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA------------------------------------------K  136 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~------------------------------------------~  136 (324)
                      ..++.|..+.|++|+++.+.+.++.+.  + -.+.+.                                          .
T Consensus       109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~  185 (232)
T PRK10877        109 HVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD  185 (232)
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence            468899999999999999988877542  0 011111                                          0


Q ss_pred             eccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       137 vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      .+..++..+++++||++.|+++ +.+|+.   ..|..+.++|.++|.+.
T Consensus       186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        186 VDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             chHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence            1112336788899999999988 666754   47889999999999764

>KOG3425|consensus

Probab=97.58  E-value=0.0005  Score=48.90  Aligned_cols=65  Identities=26%  Similarity=0.443  Sum_probs=50.4

Q ss_pred             cCCCEEEEEeC--------CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-------hhhhhhCCc-cccceEEE
Q psy14086         96 SLGNHFVKFYA--------PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-------RSICQSFDI-KSYPTLLW  159 (324)
Q Consensus        96 ~~~~~~v~f~~--------~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-------~~~~~~~~i-~~~P~~~~  159 (324)
                      +++..+++|++        +||+.|.+..|.+.++-+....  ++.|+.|++.+-       ..+....++ +.+||++=
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr  101 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR  101 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence            34457888986        8999999999999999987766  799999998643       234455566 78999987


Q ss_pred             EeC
Q psy14086        160 IES  162 (324)
Q Consensus       160 ~~~  162 (324)
                      +.+
T Consensus       102 w~~  104 (128)
T KOG3425|consen  102 WKR  104 (128)
T ss_pred             EcC
Confidence            764

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.58  E-value=0.00045  Score=45.61  Aligned_cols=67  Identities=13%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh----CCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS----FDIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~----~~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      ++.|+++||++|..+...+.+.        .+.+..+|.+.+....+.    .++.++|++++  +|.   ...| .+.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~   67 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPD   67 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHH
Confidence            5789999999999988777652        355566666554433333    36788998875  342   2333 4666


Q ss_pred             HHHHH
Q psy14086        177 TLVNY  181 (324)
Q Consensus       177 ~i~~f  181 (324)
                      .|.++
T Consensus        68 ~l~~~   72 (73)
T cd02976          68 KLRAL   72 (73)
T ss_pred             HHHhh
Confidence            77665

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.58  E-value=0.00032  Score=46.32  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=43.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh----hhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC----NQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      ++.|+.+||++|..+...+.+.         ++.+..++.+.  +....    +..++.++|++++  +|.   ...| .
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~--~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~   64 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDE--DPEALEELKKLNGYRSVPVVVI--GDE---HLSG-F   64 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCC--CHHHHHHHHHHcCCcccCEEEE--CCE---EEec-C
Confidence            5789999999999988777653         35566677665  33332    3336789999965  443   3344 3


Q ss_pred             CHHHHHHH
Q psy14086        305 DLEELYQF  312 (324)
Q Consensus       305 ~~~~l~~f  312 (324)
                      +.+.|.++
T Consensus        65 ~~~~l~~~   72 (73)
T cd02976          65 RPDKLRAL   72 (73)
T ss_pred             CHHHHHhh
Confidence            56666665

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.56  E-value=0.00046  Score=52.59  Aligned_cols=73  Identities=10%  Similarity=0.154  Sum_probs=51.1

Q ss_pred             cCCCEEEEEeCCC-CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPW-CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i  151 (324)
                      ..+++++.||+.| |++|...++.+.++.+++.   ++.++.|+.+..                       ..+++.||+
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  101 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV  101 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence            3567899999998 6999999999999999985   366776665421                       345556666


Q ss_pred             cc------cceEEEEeC-CeEeeeecC
Q psy14086        152 KS------YPTLLWIES-GKKLDKFQG  171 (324)
Q Consensus       152 ~~------~P~~~~~~~-g~~~~~~~g  171 (324)
                      ..      .|+.++++. |.....+.|
T Consensus       102 ~~~~~~~~~~~~~iid~~G~I~~~~~~  128 (143)
T cd03014         102 LIKDLGLLARAVFVIDENGKVIYVELV  128 (143)
T ss_pred             eeccCCccceEEEEEcCCCeEEEEEEC
Confidence            42      577777764 655544443

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.56  E-value=0.00059  Score=46.96  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=53.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCc--cccceEEEEeCCeEeeeecCCCC
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDI--KSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i--~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      +++|..+||++|.+....|+++...+.   .+.+..+|.+.+    ..+.+..|-  .++|.+++  +|+.    .|  .
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G   70 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--G   70 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--C
Confidence            678999999999999999998876543   366766676532    346666664  68998854  4533    23  3


Q ss_pred             HHHHHHHHHhhhC
Q psy14086        175 LETLVNYVSKMKG  187 (324)
Q Consensus       175 ~~~i~~fi~~~~~  187 (324)
                      .++|.+++++..+
T Consensus        71 ~~dl~~~~~~~~~   83 (86)
T TIGR02183        71 CTDFEQLVKENFD   83 (86)
T ss_pred             HHHHHHHHHhccc
Confidence            4788888877554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.55  E-value=0.0011  Score=52.92  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------cchhhhhhCC
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------QHRSICQSFD  150 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------~~~~~~~~~~  150 (324)
                      .+++++.|| +.||+.|....+.|.+++.+|... ++.++.|..+                         .+..+++.||
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            446788888 999999999999999999998642 3444443332                         2356788888


Q ss_pred             cc----cc--ceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086        151 IK----SY--PTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK  186 (324)
Q Consensus       151 i~----~~--P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~  186 (324)
                      +.    +.  |+.+++++ |.....+.    ..++.+++.+.+..+-
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            83    45  99999986 54433332    2368999999887654

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.54  E-value=0.0011  Score=53.74  Aligned_cols=90  Identities=10%  Similarity=0.189  Sum_probs=60.2

Q ss_pred             CCcEEE-EEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------------ccchhhhh
Q psy14086        225 SGTVFI-KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------------ELSKDLCN  278 (324)
Q Consensus       225 ~~~~~v-~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------------~~~~~~~~  278 (324)
                      ++.++| .|++.||+.|....+.+.++..++...  ++.+..++++.                         +.+..+++
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~  104 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR  104 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence            454444 689999999999999999888664433  34444444432                         01346667


Q ss_pred             hcCCC------ccceEEEEe-cCeeeeee----cCCCCHHHHHHHHHhh
Q psy14086        279 QEGVD------GFPSIYVYK-NGVRTAEY----NGSRDLEELYQFILKH  316 (324)
Q Consensus       279 ~~~i~------~~P~l~~~~-~g~~~~~~----~g~~~~~~l~~fi~~~  316 (324)
                      .||+.      .+|+.+++. +|+.....    .+.++.+++.+.|+..
T Consensus       105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            78873      489998885 66554322    3447899999988764

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.51  E-value=0.00068  Score=53.73  Aligned_cols=43  Identities=9%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT  140 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~  140 (324)
                      ..++++|.|||+||+.|.+ .+.|++++++|++. .+.++.+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeecc
Confidence            3567899999999999975 88999999999753 5888888773

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.51  E-value=0.00062  Score=53.97  Aligned_cols=55  Identities=20%  Similarity=0.370  Sum_probs=38.9

Q ss_pred             eeEecccc--ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086        211 VVSLTSEN--FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT  269 (324)
Q Consensus       211 v~~l~~~~--~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~  269 (324)
                      +..++++.  +.+ ..+++++|.|+|.||+.|+. .+.|+++.+++...  ++.+..+.++
T Consensus        10 ~~~~~G~~v~Ls~-~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~--gl~Vlg~p~n   66 (183)
T PRK10606         10 VTTIDGEVTTLEK-YAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ--GFVVLGFPCN   66 (183)
T ss_pred             eECCCCCEEeHHH-hCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC--CeEEEEeecc
Confidence            44444443  323 24678999999999999975 88999999775433  5777777763

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.51  E-value=0.0006  Score=51.67  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT  140 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~  140 (324)
                      .+++++|.|| +.||+.|....+.+.+++.+++.. .+.|+.|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4667888899 789999999999999999998532 4666666543

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.49  E-value=0.00035  Score=47.50  Aligned_cols=78  Identities=15%  Similarity=0.328  Sum_probs=58.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC--eEeeeecCCCCHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG--KKLDKFQGSRTLETL  178 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g--~~~~~~~g~~~~~~i  178 (324)
                      +++|..+.|.-|..+...++.+....    .+.+-.+|++.++.+.++|+. .+|.+.+-..+  .......+.++.+.|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence            67899999999999999998866554    488999999999999999996 69965543211  112335678999999


Q ss_pred             HHHHH
Q psy14086        179 VNYVS  183 (324)
Q Consensus       179 ~~fi~  183 (324)
                      .+||+
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99984

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.47  E-value=0.001  Score=50.35  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------cchhhhhhcCC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------LSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~~i  282 (324)
                      .+++++|.|| +.||+.|....+.+.++..++...  ++.++.+..+..                    ....+.+.+++
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~   98 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV   98 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence            4678899999 789999999999999998765333  566666665431                    12345556666


Q ss_pred             Cccc---------eEEEEe-cCeeeeeecCC
Q psy14086        283 DGFP---------SIYVYK-NGVRTAEYNGS  303 (324)
Q Consensus       283 ~~~P---------~l~~~~-~g~~~~~~~g~  303 (324)
                      ...|         +++++. +|+.+..+.|.
T Consensus        99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~  129 (140)
T cd02971          99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEP  129 (140)
T ss_pred             ccccccccCceeEEEEEECCCCcEEEEEecC
Confidence            5554         666664 56666666665

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.47  E-value=0.00053  Score=43.59  Aligned_cols=56  Identities=25%  Similarity=0.547  Sum_probs=39.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEecCe
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYKNGV  295 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~~g~  295 (324)
                      ++.|..+||++|+.....|++.         ++.+..+|.+..  ...++.+..+..++|++++  +|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence            5789999999999998777433         366777787762  1233444458899999965  554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.43  E-value=0.00062  Score=51.75  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=35.2

Q ss_pred             cCCcEEEEEeCCCChh-hhhhhHhHHHHHHHhhcCC-CCeEEEEEecC
Q psy14086        224 KSGTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDNK-HGIVIAKVDCT  269 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~-C~~~~~~~~~~a~~~~~~~-~~~~~~~id~~  269 (324)
                      .++.++|.||++||++ |....+.++++..++.... .++.+..+..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            4678999999999998 9999999999986643321 24777777654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.41  E-value=0.0034  Score=44.37  Aligned_cols=90  Identities=19%  Similarity=0.260  Sum_probs=61.2

Q ss_pred             ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhCCccc-cceEE
Q psy14086         87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSFDIKS-YPTLL  158 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~-~P~~~  158 (324)
                      +.++++++++   +++++++=.++.|+-.......|++......+  .+.++.+|..+++    .++++|||.. -|.++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i   83 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI   83 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence            4567777774   45667777788899999999999999988876  5899999988764    5788999994 89999


Q ss_pred             EEeCCeEeeeec-CCCCHHHH
Q psy14086        159 WIESGKKLDKFQ-GSRTLETL  178 (324)
Q Consensus       159 ~~~~g~~~~~~~-g~~~~~~i  178 (324)
                      ++++|+.+..-. ..++.++|
T Consensus        84 li~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   84 LIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEETTEEEEEEEGGG-SHHHH
T ss_pred             EEECCEEEEECccccCCHHhc
Confidence            999998763221 34666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.41  E-value=0.0012  Score=45.43  Aligned_cols=77  Identities=21%  Similarity=0.294  Sum_probs=52.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc--chhhhhhcCC--CccceEEEEecCeeeeeecCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL--SKDLCNQEGV--DGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i--~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      +++|..+||++|......|+++..+ +   ..+.+..+|.+...  ..++.+..+-  .++|.++  -+|+.    -|. 
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~-~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~----igG-   70 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIE-R---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH----VGG-   70 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcc-c---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE----ecC-
Confidence            6789999999999999999888633 1   13667777776411  2345555663  6899993  45543    243 


Q ss_pred             CHHHHHHHHHhhc
Q psy14086        305 DLEELYQFILKHK  317 (324)
Q Consensus       305 ~~~~l~~fi~~~~  317 (324)
                       .++|.+++++..
T Consensus        71 -~~dl~~~~~~~~   82 (86)
T TIGR02183        71 -CTDFEQLVKENF   82 (86)
T ss_pred             -HHHHHHHHHhcc
Confidence             588888887754

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.40  E-value=0.0015  Score=52.99  Aligned_cols=86  Identities=14%  Similarity=0.261  Sum_probs=59.6

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhhhCCcc
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQSFDIK  152 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~~~~i~  152 (324)
                      +++.|++.||+.|....+.|.+++.+|+.. ++.++.|.++.                           ...+++.||+.
T Consensus        29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          29 ILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            356899999999999999999999999653 45555554432                           24567788875


Q ss_pred             ----c----cceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        153 ----S----YPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       153 ----~----~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                          +    .|+.+++++ |+....+.+    .++.+++.+.|..+.
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq  154 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ  154 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence                2    356788876 544433333    357888888887653

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.39  E-value=0.00037  Score=53.50  Aligned_cols=74  Identities=19%  Similarity=0.449  Sum_probs=47.2

Q ss_pred             ccccc-cCCcEEEEEeCCCChhhhhhhH-hHH--HHHHHhhcCCCCeEEEEEecCCccchhhhhhc--------CCCccc
Q psy14086        219 FNDVI-KSGTVFIKFFAPWCGHCKRLAP-TWE--ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE--------GVDGFP  286 (324)
Q Consensus       219 ~~~~~-~~~~~~v~f~~~~c~~C~~~~~-~~~--~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~~P  286 (324)
                      ++..- ++++++|.++..||+.|..+.. .|.  ++| ++++.  ++.-+++|.++  .+++...|        +..++|
T Consensus        30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa-~~lN~--~FI~VkvDree--~Pdid~~y~~~~~~~~~~gGwP  104 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVA-EYLNR--NFIPVKVDREE--RPDIDKIYMNAVQAMSGSGGWP  104 (163)
T ss_dssp             HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHH-HHHHH--H-EEEEEETTT---HHHHHHHHHHHHHHHS---SS
T ss_pred             HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHH-HHHhC--CEEEEEecccc--CccHHHHHHHHHHHhcCCCCCC
Confidence            44433 3568999999999999998764 553  566 44544  68888899888  78887777        778999


Q ss_pred             eEEEE-ecCeee
Q psy14086        287 SIYVY-KNGVRT  297 (324)
Q Consensus       287 ~l~~~-~~g~~~  297 (324)
                      +.++. ++|+.+
T Consensus       105 l~vfltPdg~p~  116 (163)
T PF03190_consen  105 LTVFLTPDGKPF  116 (163)
T ss_dssp             EEEEE-TTS-EE
T ss_pred             ceEEECCCCCee
Confidence            99888 567664

; PDB: 3IRA_A.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.34  E-value=0.0029  Score=52.99  Aligned_cols=94  Identities=15%  Similarity=0.241  Sum_probs=63.7

Q ss_pred             HHHhcCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------cc
Q psy14086         92 EKYVSLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------QH  142 (324)
Q Consensus        92 ~~~~~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~  142 (324)
                      .++..++.+++.|| +.||+.|....+.|.+++.+|+.. ++.++.+.++                            .+
T Consensus        93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~  171 (261)
T PTZ00137         93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS  171 (261)
T ss_pred             HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC
Confidence            44434556666666 899999999999999999998642 2333333322                            12


Q ss_pred             hhhhhhCCcc-----ccceEEEEeC-CeEeeee----cCCCCHHHHHHHHHhhh
Q psy14086        143 RSICQSFDIK-----SYPTLLWIES-GKKLDKF----QGSRTLETLVNYVSKMK  186 (324)
Q Consensus       143 ~~~~~~~~i~-----~~P~~~~~~~-g~~~~~~----~g~~~~~~i~~fi~~~~  186 (324)
                      ..+++.||+.     ..|+.+++++ |.....+    ...++.+++.+.|..+.
T Consensus       172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq  225 (261)
T PTZ00137        172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ  225 (261)
T ss_pred             hHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence            4677888885     4799999985 6544433    23468888888887654

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.33  E-value=0.0043  Score=44.19  Aligned_cols=93  Identities=11%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             eEc-ChhhHHHHhc-CC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         84 VEL-TEESFEKYVS-LG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        84 ~~l-~~~~f~~~~~-~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      ..+ +.+.+++++. .. ..+|.|+...-.+   ....|.++|..++.  .+.|+..   .+..+...+++. .|+++++
T Consensus         3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~--d~~F~~~---~~~~~~~~~~~~-~~~i~l~   73 (102)
T cd03066           3 EIINSERELQAFENIEDDIKLIGYFKSEDSE---HYKAFEEAAEEFHP--YIKFFAT---FDSKVAKKLGLK-MNEVDFY   73 (102)
T ss_pred             eEcCCHHHHHHHhcccCCeEEEEEECCCCCH---HHHHHHHHHHhhhc--CCEEEEE---CcHHHHHHcCCC-CCcEEEe
Confidence            344 4566888886 44 4567777664443   56789999999987  7888743   345677778775 6889999


Q ss_pred             eC-CeEeeee-cCCCCHHHHHHHHHhh
Q psy14086        161 ES-GKKLDKF-QGSRTLETLVNYVSKM  185 (324)
Q Consensus       161 ~~-g~~~~~~-~g~~~~~~i~~fi~~~  185 (324)
                      +. ......| .|..+.+.|.+||...
T Consensus        74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          74 EPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            76 5444568 7788999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG0911|consensus

Probab=97.33  E-value=0.00013  Score=57.97  Aligned_cols=75  Identities=15%  Similarity=0.353  Sum_probs=64.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      .+..++.||++||..|+.+...+..++ ++. .  ++.|++++++.  .++++..+.+...|.++++..|+.+....|..
T Consensus        17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~-~~~-~--~~~~~k~~a~~--~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~   90 (227)
T KOG0911|consen   17 GKLLVLHFWAIWAVVQKQMDQVFDHLA-EYF-K--NAQFLKLEAEE--FPEISNLIAVEAVPYFVFFFLGEKVDRLSGAD   90 (227)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHH-Hhh-h--hheeeeehhhh--hhHHHHHHHHhcCceeeeeecchhhhhhhccC
Confidence            457899999999999999999999999 445 3  69999999999  99999999999999999998887776666654


Q ss_pred             C
Q psy14086        305 D  305 (324)
Q Consensus       305 ~  305 (324)
                      .
T Consensus        91 ~   91 (227)
T KOG0911|consen   91 P   91 (227)
T ss_pred             c
Confidence            3

>KOG3414|consensus

Probab=97.32  E-value=0.0022  Score=45.99  Aligned_cols=99  Identities=10%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             hhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         89 ESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        89 ~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      ...++.+   ..+.+++.|--.|.+.|.++-..+.++++...+  -..++-+|.++-+.+.+.|++...|++++|-+++.
T Consensus        12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH   89 (142)
T KOG3414|consen   12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH   89 (142)
T ss_pred             HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence            3444444   234568999999999999999999999999987  67888899999999999999999999988855543


Q ss_pred             ee---------eecCC-CCHHHHHHHHHhhhCCC
Q psy14086        166 LD---------KFQGS-RTLETLVNYVSKMKGPL  189 (324)
Q Consensus       166 ~~---------~~~g~-~~~~~i~~fi~~~~~~~  189 (324)
                      ..         +..+. -+.+++.+.++....+.
T Consensus        90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga  123 (142)
T KOG3414|consen   90 MKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA  123 (142)
T ss_pred             EEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence            21         22333 35777777777666554

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.29  E-value=0.002  Score=48.99  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=52.0

Q ss_pred             cCCcEEEEEeCCC-ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------cc-hhhhhhcC
Q psy14086        224 KSGTVFIKFFAPW-CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------LS-KDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~~-~~~~~~~~  281 (324)
                      .+++++|.||+.| |++|+...+.+.++..+ +.   ++.++.|+.+..                    .. ..+.+.|+
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~-~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g  100 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAK-LD---NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG  100 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHh-cC---CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence            4578999999998 68999999999999866 43   467777776531                    01 34455667


Q ss_pred             CCc------cceEEEEe-cCeeeeeecC
Q psy14086        282 VDG------FPSIYVYK-NGVRTAEYNG  302 (324)
Q Consensus       282 i~~------~P~l~~~~-~g~~~~~~~g  302 (324)
                      +..      .|+.+++. +|+.+....|
T Consensus       101 v~~~~~~~~~~~~~iid~~G~I~~~~~~  128 (143)
T cd03014         101 VLIKDLGLLARAVFVIDENGKVIYVELV  128 (143)
T ss_pred             CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence            642      57877774 6776555543

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.29  E-value=0.004  Score=52.16  Aligned_cols=95  Identities=14%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             cccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------c
Q psy14086        220 NDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------L  272 (324)
Q Consensus       220 ~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~  272 (324)
                      .+...++.+++.|| +.||+.|....+.+.++..++...  ++.+..+..+..                          .
T Consensus        93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~  170 (261)
T PTZ00137         93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDI  170 (261)
T ss_pred             HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcC
Confidence            33334557777777 799999999999999988665433  344444444330                          1


Q ss_pred             chhhhhhcCCC-----ccceEEEEe-cCeeeeee----cCCCCHHHHHHHHHhh
Q psy14086        273 SKDLCNQEGVD-----GFPSIYVYK-NGVRTAEY----NGSRDLEELYQFILKH  316 (324)
Q Consensus       273 ~~~~~~~~~i~-----~~P~l~~~~-~g~~~~~~----~g~~~~~~l~~fi~~~  316 (324)
                      +..+++.||+.     ..|+.+++. +|+....+    ...++.+++.+.|...
T Consensus       171 ~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        171 SREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             ChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            24667788874     479998885 67654433    2236888888888643

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.24  E-value=0.0012  Score=41.99  Aligned_cols=51  Identities=14%  Similarity=0.367  Sum_probs=37.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  159 (324)
                      +++|..++|++|+.....|++.        ++.+-.+|.+.+..    +.+..|..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            4789999999999988887432        36677777765533    333349999998876

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.24  E-value=0.0012  Score=45.47  Aligned_cols=95  Identities=21%  Similarity=0.404  Sum_probs=69.6

Q ss_pred             ccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC----ccc-eEEE
Q psy14086        217 ENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD----GFP-SIYV  290 (324)
Q Consensus       217 ~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~----~~P-~l~~  290 (324)
                      ++|...+..+ .++|.|..+. ..-......+.++|.. ..+  .-.++++||...+...+|+++.+.    .-| .|.-
T Consensus        10 KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~-vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH   85 (112)
T cd03067          10 KDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQA-VKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH   85 (112)
T ss_pred             HHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHH-hcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence            4466666554 5777776543 3334456688888855 444  467888999887788999999997    444 4567


Q ss_pred             EecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        291 YKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       291 ~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      |++|.--..|+-..+..+|.+|+++
T Consensus        86 YKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          86 YKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             ccCCCccccccchhhHHHHHHHhhC
Confidence            8999777778888999999999975

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.23  E-value=0.002  Score=52.01  Aligned_cols=77  Identities=16%  Similarity=0.272  Sum_probs=52.8

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEE------------------------------------------
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA------------------------------------------  135 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~------------------------------------------  135 (324)
                      +..++.|+.+.|++|+++.+.+.+.    .++-.+.+.                                          
T Consensus        78 ~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~  153 (197)
T cd03020          78 KRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS  153 (197)
T ss_pred             CEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence            3568999999999999999888751    110011111                                          


Q ss_pred             -EeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086        136 -KIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       136 -~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                       ..+...+..+++++||+++|+++ +.+|..   +.|..+.++|.++|
T Consensus       154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence             11222336788899999999997 666754   56888888888764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.20  E-value=0.0017  Score=43.80  Aligned_cols=71  Identities=20%  Similarity=0.403  Sum_probs=46.3

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-cchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      ..-++.|..+||+.|+.....|.+.         ++.+-.+|++.. ...++....+...+|.++  -+|+.+    |. 
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i----gG-   70 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI----GG-   70 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE----cC-
Confidence            4457789999999999998888643         355556676652 113444556788999994  366432    32 


Q ss_pred             CHHHHHHHH
Q psy14086        305 DLEELYQFI  313 (324)
Q Consensus       305 ~~~~l~~fi  313 (324)
                       .++|.+||
T Consensus        71 -~~~l~~~l   78 (79)
T TIGR02190        71 -SDELEAYL   78 (79)
T ss_pred             -HHHHHHHh
Confidence             36666665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.19  E-value=0.0025  Score=43.00  Aligned_cols=69  Identities=22%  Similarity=0.379  Sum_probs=46.2

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---hhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---RSICQSFDIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      ...+++|..+||++|......|.+.        ++.+-.+|++.+   ..+.+..|..++|.+++  +|+.+    |.  
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i----gG--   70 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI----GG--   70 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE----cC--
Confidence            3457889999999999998888642        355556666544   34555568889998854  55432    22  


Q ss_pred             HHHHHHHH
Q psy14086        175 LETLVNYV  182 (324)
Q Consensus       175 ~~~i~~fi  182 (324)
                      .++|.+|+
T Consensus        71 ~~~l~~~l   78 (79)
T TIGR02190        71 SDELEAYL   78 (79)
T ss_pred             HHHHHHHh
Confidence            36676665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.16  E-value=0.0044  Score=50.62  Aligned_cols=88  Identities=9%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             CCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhhh
Q psy14086         97 LGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQS  148 (324)
Q Consensus        97 ~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~~  148 (324)
                      .+. +++.|++.||+.|....+.|.+++.+|... ++.++.+.++.                           +..+++.
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            444 367899999999999999999999999642 35555444432                           2356777


Q ss_pred             CCcc-------ccceEEEEeC-CeEeeee--c--CCCCHHHHHHHHHhh
Q psy14086        149 FDIK-------SYPTLLWIES-GKKLDKF--Q--GSRTLETLVNYVSKM  185 (324)
Q Consensus       149 ~~i~-------~~P~~~~~~~-g~~~~~~--~--g~~~~~~i~~fi~~~  185 (324)
                      ||+.       ..|+.+++++ |+....+  .  ..++.++|.+.|..+
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8873       5799999986 5443322  1  236788888888764

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.16  E-value=0.0059  Score=43.65  Aligned_cols=89  Identities=16%  Similarity=0.279  Sum_probs=63.8

Q ss_pred             ChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC---
Q psy14086         87 TEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES---  162 (324)
Q Consensus        87 ~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~---  162 (324)
                      +.++.++++. .+..+|.|+.....   .....|.++|..++.  .+.|+..   ....+...+++  .|++++|++   
T Consensus         7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~   76 (104)
T cd03069           7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRL   76 (104)
T ss_pred             CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEE---ChHHHHHhcCC--CCceEEEechhh
Confidence            3456777664 44567777766443   356799999999987  6888754   34567788888  688888843   


Q ss_pred             ----CeEeeeecCCCCHHHHHHHHHhh
Q psy14086        163 ----GKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       163 ----g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                          ......|.|..+.+.|.+||...
T Consensus        77 ~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          77 SNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hcccCcccccccCcCCHHHHHHHHHhh
Confidence                22334589999999999999763

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.15  E-value=0.0019  Score=43.88  Aligned_cols=78  Identities=18%  Similarity=0.271  Sum_probs=57.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC--eeeeeecCCCCH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDL  306 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g--~~~~~~~g~~~~  306 (324)
                      ++.|..+.|+-|......+..++..   .  .+.+-.+|+++  ++++..+|+. .+|.+.+-..+  .......+..+.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~---~--~~~l~~vDI~~--d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~   73 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE---F--PFELEEVDIDE--DPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDE   73 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT---S--TCEEEEEETTT--THHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-H
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh---c--CceEEEEECCC--CHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCH
Confidence            6789999999999999988887622   2  58899999998  8999999997 69987542211  112345577899


Q ss_pred             HHHHHHHH
Q psy14086        307 EELYQFIL  314 (324)
Q Consensus       307 ~~l~~fi~  314 (324)
                      +.|.+||+
T Consensus        74 ~~L~~~L~   81 (81)
T PF05768_consen   74 EQLRAWLE   81 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999984

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK13189 peroxiredoxin; Provisional

Probab=97.15  E-value=0.0037  Score=51.35  Aligned_cols=85  Identities=11%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhhCCcc-
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQSFDIK-  152 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~~~i~-  152 (324)
                      ++.|++.||+.|....+.|.+++.+|+.. ++.++.+.++                           ....+++.||+. 
T Consensus        40 L~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~  118 (222)
T PRK13189         40 LFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS  118 (222)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc
Confidence            45778999999999999999999999642 3444444332                           124566778865 


Q ss_pred             ------ccceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086        153 ------SYPTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK  186 (324)
Q Consensus       153 ------~~P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~  186 (324)
                            ..|+.+++++ |.......    ..++.+++.+.|..+.
T Consensus       119 ~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  163 (222)
T PRK13189        119 PGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ  163 (222)
T ss_pred             cccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence                  4688888886 54433222    3467888888887654

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.13  E-value=0.0023  Score=51.71  Aligned_cols=78  Identities=22%  Similarity=0.378  Sum_probs=52.5

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-----C-----------------------------
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----Q-----------------------------  270 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-----~-----------------------------  270 (324)
                      .+..++.|+.+.|++|+.+.+.+.+..     .  ++.+..+...     .                             
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~-----~--~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~  149 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKPNA-----D--GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP  149 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhcc-----C--ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence            356899999999999999988776511     0  1111111110     0                             


Q ss_pred             ---------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        271 ---------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       271 ---------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                               ..+..++..+||+++|+++ +.+|..   +.|..+.+.|.+||
T Consensus       150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             CccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence                     1134677889999999997 777765   46888888888764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.09  E-value=0.0015  Score=44.37  Aligned_cols=71  Identities=21%  Similarity=0.398  Sum_probs=45.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc---chhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL---SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~---~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      ++.|+++||++|..+...+.++..       .+.+..++.....   ...+.+..+..++|.+  |-+|+.+    |.  
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i----gg--   66 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI----GG--   66 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE----cC--
Confidence            578999999999999999988762       3556666655410   0134455678889997  5566442    22  


Q ss_pred             HHHHHHHHH
Q psy14086        306 LEELYQFIL  314 (324)
Q Consensus       306 ~~~l~~fi~  314 (324)
                      .+++.+..+
T Consensus        67 ~~~~~~~~~   75 (82)
T cd03419          67 CDDLMALHK   75 (82)
T ss_pred             HHHHHHHHH
Confidence            455555443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.08  E-value=0.0054  Score=51.42  Aligned_cols=81  Identities=12%  Similarity=0.271  Sum_probs=55.8

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------------------------  139 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------------------------  139 (324)
                      ..++.|..+.|++|+++.+.+..+.+.  +  ++.+..+-.                                       
T Consensus       119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~--g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        119 RIVYVFADPNCPYCKQFWQQARPWVDS--G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHhhc--C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            358899999999999999888765543  1  222211100                                       


Q ss_pred             -----------ccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        140 -----------TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       140 -----------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                                 .++..+++.+||+++|++++-+.........|..+.++|.+.+.
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence                       01234777899999999998875334445789999999988763

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.07  E-value=0.0071  Score=49.04  Aligned_cols=87  Identities=8%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhhhhcCC
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLCNQEGV  282 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~~i  282 (324)
                      +++.|++.||+.|....+.+.++..++...  ++.++.++++..                         ....+++.||+
T Consensus        29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~  106 (203)
T cd03016          29 ILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM  106 (203)
T ss_pred             EEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence            566889999999999999999999765444  456666655431                         12356677886


Q ss_pred             C----c----cceEEEE-ecCeeeeeecC----CCCHHHHHHHHHhh
Q psy14086        283 D----G----FPSIYVY-KNGVRTAEYNG----SRDLEELYQFILKH  316 (324)
Q Consensus       283 ~----~----~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~~  316 (324)
                      .    +    .|+.+++ ++|+....+.+    .++.+++.+.|...
T Consensus       107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            4    2    3456777 46765444333    35788888888653

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.07  E-value=0.0068  Score=49.54  Aligned_cols=90  Identities=6%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             cCCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhh
Q psy14086         96 SLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQ  147 (324)
Q Consensus        96 ~~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~  147 (324)
                      .++.+ ++.|++.||+.|....+.|.+++.+|+.. ++.++.+.++.                           +..+++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~  110 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK  110 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence            34444 45789999999999999999999999642 35555444431                           235566


Q ss_pred             hCCcc-------ccceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086        148 SFDIK-------SYPTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~-------~~P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~  186 (324)
                      .||+.       ..|+.+++++ |.....+.    -.++.+++.+.|+.+.
T Consensus       111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  161 (215)
T PRK13191        111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ  161 (215)
T ss_pred             HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            77763       3688888876 54433222    2368999999887653

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.07  E-value=0.0076  Score=49.25  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             cCCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhh
Q psy14086        224 KSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLC  277 (324)
Q Consensus       224 ~~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~  277 (324)
                      .++. +++.|++.||+.|....+.+.++..++...  ++.+.-++++..                         .+..++
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va  104 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS  104 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence            3454 567999999999999999999998665434  455555555441                         123566


Q ss_pred             hhcCCC-------ccceEEEEe-cCeeeee--ec--CCCCHHHHHHHHHhh
Q psy14086        278 NQEGVD-------GFPSIYVYK-NGVRTAE--YN--GSRDLEELYQFILKH  316 (324)
Q Consensus       278 ~~~~i~-------~~P~l~~~~-~g~~~~~--~~--g~~~~~~l~~fi~~~  316 (324)
                      +.||+-       ..|+++++. +|+....  |.  ..++.+++.+.|+..
T Consensus       105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            778762       579998885 6765432  22  226788999888753

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.05  E-value=0.009  Score=46.37  Aligned_cols=81  Identities=20%  Similarity=0.363  Sum_probs=60.3

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------------------------  142 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~------------------------------------  142 (324)
                      ..++.|+...|++|..+.+.+.++.+.+-+.+++.|...+....                                    
T Consensus        14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (162)
T PF13462_consen   14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQENFE   93 (162)
T ss_dssp             EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHSTS
T ss_pred             eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Confidence            35899999999999999999999999983223777776654200                                    


Q ss_pred             --------------------------------hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        143 --------------------------------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       143 --------------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                                                      ...+++.||+++|++++  +|+.   +.|..+.++|.+.|++
T Consensus        94 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   94 NKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK  162 (162)
T ss_dssp             SHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred             hhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence                                            34455679999999988  6655   4788899999998864

...

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.03  E-value=0.0073  Score=43.02  Aligned_cols=94  Identities=15%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             eeEecc-cccccccc-CC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        211 VVSLTS-ENFNDVIK-SG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       211 v~~l~~-~~~~~~~~-~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      ++.|+. +.++.++. +. .++|-|+...-+   .....+.++|.. ++.  .+.|+...     +.++...+++. .|+
T Consensus         2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~-~R~--d~~F~~~~-----~~~~~~~~~~~-~~~   69 (102)
T cd03066           2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEE-FHP--YIKFFATF-----DSKVAKKLGLK-MNE   69 (102)
T ss_pred             ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHh-hhc--CCEEEEEC-----cHHHHHHcCCC-CCc
Confidence            445533 44888886 44 566667654322   356678888855 444  47776644     56667778774 799


Q ss_pred             EEEEec-Ceeeeee-cCCCCHHHHHHHHHhh
Q psy14086        288 IYVYKN-GVRTAEY-NGSRDLEELYQFILKH  316 (324)
Q Consensus       288 l~~~~~-g~~~~~~-~g~~~~~~l~~fi~~~  316 (324)
                      +++++. ......| .|..+.+.|.+||..+
T Consensus        70 i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          70 VDFYEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             EEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            999975 4444568 7888999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.03  E-value=0.0092  Score=48.77  Aligned_cols=91  Identities=8%  Similarity=0.109  Sum_probs=60.3

Q ss_pred             cCCcE-EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhh
Q psy14086        224 KSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLC  277 (324)
Q Consensus       224 ~~~~~-~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~  277 (324)
                      .++.+ ++.|++.||+.|....+.|.+++.++...  ++.++.++++..                         .+..++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia  109 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA  109 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence            34544 45889999999999999999999775444  455666665541                         023555


Q ss_pred             hhcCCC-------ccceEEEEe-cCeeeeee--c--CCCCHHHHHHHHHhh
Q psy14086        278 NQEGVD-------GFPSIYVYK-NGVRTAEY--N--GSRDLEELYQFILKH  316 (324)
Q Consensus       278 ~~~~i~-------~~P~l~~~~-~g~~~~~~--~--g~~~~~~l~~fi~~~  316 (324)
                      +.||+-       ..|+.+++. +|.....+  .  -.++.+++.+.|+..
T Consensus       110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            667752       368887874 67654332  2  226899999988753

>PRK13189 peroxiredoxin; Provisional

Probab=96.99  E-value=0.0095  Score=48.98  Aligned_cols=91  Identities=11%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             cCCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------cchhhh
Q psy14086        224 KSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------LSKDLC  277 (324)
Q Consensus       224 ~~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~  277 (324)
                      .++. +++.|++.||+.|....+.+.+++.++...  ++.+..++++..                         ....++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia  111 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA  111 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence            3453 555778999999999999999998665433  445555554430                         123566


Q ss_pred             hhcCCC-------ccceEEEEe-cCeeeeeec----CCCCHHHHHHHHHhh
Q psy14086        278 NQEGVD-------GFPSIYVYK-NGVRTAEYN----GSRDLEELYQFILKH  316 (324)
Q Consensus       278 ~~~~i~-------~~P~l~~~~-~g~~~~~~~----g~~~~~~l~~fi~~~  316 (324)
                      +.||+.       .+|+.+++. +|.......    ..++.+++.+.|...
T Consensus       112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            777764       468888885 676533322    346788998888754

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=96.98  E-value=0.015  Score=42.45  Aligned_cols=96  Identities=11%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             hhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce-EEEEeCCe
Q psy14086         89 ESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT-LLWIESGK  164 (324)
Q Consensus        89 ~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~-~~~~~~g~  164 (324)
                      -..++.+   .++.+++.|-..|.+.|.++-..+.+++.+.++  -..++.||.++-+++.+.|.+. -|. +++|-+++
T Consensus         9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk   85 (133)
T PF02966_consen    9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK   85 (133)
T ss_dssp             HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred             chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence            3455555   334568999999999999999999999999987  7899999999999999999998 775 55554454


Q ss_pred             Eee---------eecCC-CCHHHHHHHHHhhhC
Q psy14086        165 KLD---------KFQGS-RTLETLVNYVSKMKG  187 (324)
Q Consensus       165 ~~~---------~~~g~-~~~~~i~~fi~~~~~  187 (324)
                      ...         +..+. .+.+++.+-++....
T Consensus        86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~iyr  118 (133)
T PF02966_consen   86 HMMVDFGTGNNNKINWAFEDKQEFIDIIETIYR  118 (133)
T ss_dssp             EEEEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence            332         12233 356777777665544

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>KOG3414|consensus

Probab=96.94  E-value=0.019  Score=41.37  Aligned_cols=85  Identities=20%  Similarity=0.274  Sum_probs=63.8

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee--ee-----
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR--TA-----  298 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~--~~-----  298 (324)
                      +.++|-|...|-+.|..+-..+...+.+.. .  -..++-+|.++  -+++.+.|++...|++++|=+++-  +.     
T Consensus        24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs-n--fa~Iylvdide--V~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgd   98 (142)
T KOG3414|consen   24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVS-N--FAVIYLVDIDE--VPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGD   98 (142)
T ss_pred             eEEEEEecCCCCchHhhHHHHHHHHHHHHh-h--ceEEEEEecch--hhhhhhhhcccCCceEEEEEcCceEEEeeCCCC
Confidence            579999999999999999999999996643 3  26677788888  789999999999999988854432  11     


Q ss_pred             --eecCC-CCHHHHHHHHHh
Q psy14086        299 --EYNGS-RDLEELYQFILK  315 (324)
Q Consensus       299 --~~~g~-~~~~~l~~fi~~  315 (324)
                        ..++. .+.+++.+.++-
T Consensus        99 n~Kin~~~~~kq~~Idiie~  118 (142)
T KOG3414|consen   99 NNKINFAFEDKQEFIDIIET  118 (142)
T ss_pred             CceEEEEeccHHHHHHHHHH
Confidence              12232 356777777664

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.93  E-value=0.0026  Score=43.17  Aligned_cols=69  Identities=17%  Similarity=0.374  Sum_probs=45.6

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----hhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      ++.|+++||+.|..+...+.++...      +.+..++...+     ..+.+..|..++|.++  -+|+.+    |  ..
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i----g--g~   67 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI----G--GC   67 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE----c--CH
Confidence            5789999999999999999887653      45556655433     2355567888999863  345432    2  33


Q ss_pred             HHHHHHHH
Q psy14086        176 ETLVNYVS  183 (324)
Q Consensus       176 ~~i~~fi~  183 (324)
                      +++.+..+
T Consensus        68 ~~~~~~~~   75 (82)
T cd03419          68 DDLMALHK   75 (82)
T ss_pred             HHHHHHHH
Confidence            45555544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.93  E-value=0.0043  Score=41.01  Aligned_cols=66  Identities=11%  Similarity=0.206  Sum_probs=45.4

Q ss_pred             EEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC---CccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086        102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF---DIKSYPTLLWIESGKKLDKFQGSRTLETL  178 (324)
Q Consensus       102 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~g~~~~~~~g~~~~~~i  178 (324)
                      .+|..++|++|+.....|.+.        .+.|-.+|++.++.....+   |..++|.+++  +|..   .-|.++.+.|
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~---~~~G~~~~~~   68 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL---SWSGFRPDKL   68 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc---EEeccCHHHH
Confidence            578899999999988888642        4777777877665544444   8788998754  3322   3445677776


Q ss_pred             HH
Q psy14086        179 VN  180 (324)
Q Consensus       179 ~~  180 (324)
                      .+
T Consensus        69 ~~   70 (72)
T TIGR02194        69 KA   70 (72)
T ss_pred             Hh
Confidence            55

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.87  E-value=0.014  Score=44.80  Aligned_cols=29  Identities=31%  Similarity=0.572  Sum_probs=25.0

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcC
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFK  127 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~  127 (324)
                      ..++.|+.++|++|..+.+.+.++...+.
T Consensus         7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             EEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            45889999999999999999999877653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.86  E-value=0.0099  Score=40.29  Aligned_cols=72  Identities=10%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh---hhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC---NQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      +..|..+||++|...+..|.+.         ++.|-.+|++.  +++..   ...+...+|.+++  ++..   ..| .+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi~~--~~~~~~~~~~~g~~~vPvv~i--~~~~---~~G-f~   65 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINVDR--VPEAAETLRAQGFRQLPVVIA--GDLS---WSG-FR   65 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEECCC--CHHHHHHHHHcCCCCcCEEEE--CCEE---Eec-CC
Confidence            5688999999999988777442         47788888877  45432   3356778999954  4432   234 57


Q ss_pred             HHHHHHHHHhhc
Q psy14086        306 LEELYQFILKHK  317 (324)
Q Consensus       306 ~~~l~~fi~~~~  317 (324)
                      .+.|.+.+....
T Consensus        66 ~~~l~~~~~~~~   77 (81)
T PRK10329         66 PDMINRLHPAPH   77 (81)
T ss_pred             HHHHHHHHHhhh
Confidence            899998887654

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.85  E-value=0.02  Score=38.77  Aligned_cols=72  Identities=6%  Similarity=0.129  Sum_probs=51.2

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhh---hhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC---QSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~---~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      +.+|..+||++|......|.+     +   .+.|-.+|++.++...   +..|...+|.+++  ++..    .+.+..+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~---gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~----~~Gf~~~~   68 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----R---GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS----WSGFRPDM   68 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----C---CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE----EecCCHHH
Confidence            678999999999998877754     1   4788888887665533   3347778998864  3322    33568888


Q ss_pred             HHHHHHhhh
Q psy14086        178 LVNYVSKMK  186 (324)
Q Consensus       178 i~~fi~~~~  186 (324)
                      |.+.+....
T Consensus        69 l~~~~~~~~   77 (81)
T PRK10329         69 INRLHPAPH   77 (81)
T ss_pred             HHHHHHhhh
Confidence            988887654

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.80  E-value=0.0026  Score=42.10  Aligned_cols=66  Identities=18%  Similarity=0.337  Sum_probs=44.0

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh---cCCCccceEEEEecCeeeeeecCCCCH
Q psy14086        230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ---EGVDGFPSIYVYKNGVRTAEYNGSRDL  306 (324)
Q Consensus       230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~---~~i~~~P~l~~~~~g~~~~~~~g~~~~  306 (324)
                      ..|..++|+.|+..+..|++.         ++.|..+|++.  +++..+.   .|..++|.+++  +|+..  . |..+.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~--~~~~~~~~~~~g~~~vP~v~~--~g~~~--~-~G~~~   65 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDE--QPEAIDYVKAQGFRQVPVIVA--DGDLS--W-SGFRP   65 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCC--CHHHHHHHHHcCCcccCEEEE--CCCcE--E-eccCH
Confidence            578889999999998887642         46677778776  4444433   47778999844  44322  2 33566


Q ss_pred             HHHHH
Q psy14086        307 EELYQ  311 (324)
Q Consensus       307 ~~l~~  311 (324)
                      +.|.+
T Consensus        66 ~~~~~   70 (72)
T TIGR02194        66 DKLKA   70 (72)
T ss_pred             HHHHh
Confidence            66654

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG3171|consensus

Probab=96.79  E-value=0.0054  Score=48.45  Aligned_cols=101  Identities=17%  Similarity=0.302  Sum_probs=76.3

Q ss_pred             CCeeEecccc-ccccccCC----cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086        209 EPVVSLTSEN-FNDVIKSG----TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD  283 (324)
Q Consensus       209 ~~v~~l~~~~-~~~~~~~~----~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~  283 (324)
                      ..|.+++... |.+.+...    ..+|.+|-+.-..|.++-..+.-||.+ +.   .+.|.++-++.   .....+|...
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAe-yP---~vKFckikss~---~gas~~F~~n  210 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAE-YP---IVKFCKIKSSN---TGASDRFSLN  210 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhcc-CC---ceeEEEeeecc---ccchhhhccc
Confidence            5688887644 77777543    478889999999999999999999866 33   48999988765   4556789999


Q ss_pred             ccceEEEEecCeeeeee------cC-CCCHHHHHHHHHhh
Q psy14086        284 GFPSIYVYKNGVRTAEY------NG-SRDLEELYQFILKH  316 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~------~g-~~~~~~l~~fi~~~  316 (324)
                      .+|+|.+|++|+-+.-|      -| .....++..||+.+
T Consensus       211 ~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  211 VLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             CCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            99999999999764321      12 35567888888865

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=96.78  E-value=0.015  Score=46.98  Aligned_cols=89  Identities=15%  Similarity=0.259  Sum_probs=59.0

Q ss_pred             CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhhh
Q psy14086         97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~~  147 (324)
                      .+.++|.||. .||+.|....+.+.+++.+|... ++.++.|.++.                            ...+++
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            4466788885 77999988889999999998753 45555554431                            235677


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                      .||+.      .+|+.+++++ |.....+.+    .++.+++.+.|...-
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~  164 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ  164 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence            78875      3688888886 543333322    356667777666543

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.76  E-value=0.004  Score=40.70  Aligned_cols=56  Identities=29%  Similarity=0.449  Sum_probs=38.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh----hhhhcCCCccceEEEEecCeee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD----LCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      ++.|+++||++|+.+...+.+..         +.+..+|...  +.+    +.+..+...+|++  |.+|+.+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~--~~~~~~~l~~~~~~~~~P~~--~~~~~~i   61 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILE--DGELREELKELSGWPTVPQI--FINGEFI   61 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCC--CHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            56889999999999988877664         4566677766  332    3334566778877  4466544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.76  E-value=0.0023  Score=43.16  Aligned_cols=55  Identities=18%  Similarity=0.441  Sum_probs=37.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCCccceEEEEecCee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVDGFPSIYVYKNGVR  296 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~~~P~l~~~~~g~~  296 (324)
                      ++.|+.+||++|......|++..         +.+..+|++.  ++..    .+..+..++|++  |-+|+.
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~~---------i~~~~~di~~--~~~~~~~~~~~~g~~~vP~i--~i~g~~   59 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSKG---------VTFTEIRVDG--DPALRDEMMQRSGRRTVPQI--FIGDVH   59 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHcC---------CCcEEEEecC--CHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            36788999999999998887542         4455566655  3333    333467789998  446643

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PHA03050 glutaredoxin; Provisional

Probab=96.75  E-value=0.0057  Score=43.96  Aligned_cols=65  Identities=11%  Similarity=0.176  Sum_probs=40.8

Q ss_pred             HHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-c----hhhhhhCCccccceEEE
Q psy14086         91 FEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-H----RSICQSFDIKSYPTLLW  159 (324)
Q Consensus        91 f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~----~~~~~~~~i~~~P~~~~  159 (324)
                      .++.+.++. ++.|..+||++|......|.+..-...   .+....+|-.. .    ..+.+.-|-+++|.+++
T Consensus         6 v~~~i~~~~-V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050          6 VQQRLANNK-VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             HHHHhccCC-EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            344444444 778999999999999888877654322   23344443211 1    24555568889998854

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.73  E-value=0.011  Score=39.03  Aligned_cols=68  Identities=21%  Similarity=0.447  Sum_probs=44.7

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-chhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE  307 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~  307 (324)
                      ++.|..+||+.|...+..|++.         ++.+..+|.+... ...+....+...+|.+  |-+|+.+    |.  .+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i----gg--~~   65 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI----GG--SD   65 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE----eC--HH
Confidence            6789999999999998777643         3556667766521 1223333577889998  5566533    32  57


Q ss_pred             HHHHHH
Q psy14086        308 ELYQFI  313 (324)
Q Consensus       308 ~l~~fi  313 (324)
                      +|.+|+
T Consensus        66 ~l~~~l   71 (72)
T cd03029          66 DLEKYF   71 (72)
T ss_pred             HHHHHh
Confidence            777765

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=96.71  E-value=0.027  Score=45.54  Aligned_cols=89  Identities=12%  Similarity=0.238  Sum_probs=58.9

Q ss_pred             CCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhhh
Q psy14086        225 SGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDLC  277 (324)
Q Consensus       225 ~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~~  277 (324)
                      ++.++|+||. .||..|....+.+.+++.++...  ++.+..|+++..                          ....++
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia  113 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA  113 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence            5678889995 77999999888898888665443  566666666541                          123566


Q ss_pred             hhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        278 NQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       278 ~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      +.||+.      .+|+.+++. +|+......+    .++.+++.+.|..
T Consensus       114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a  162 (199)
T PTZ00253        114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA  162 (199)
T ss_pred             HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence            777874      368888885 6654433322    2567777777754

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.70  E-value=0.019  Score=37.85  Aligned_cols=66  Identities=21%  Similarity=0.335  Sum_probs=44.0

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch---hhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR---SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      +++|..++|+.|......|++.        ++.+..+|++.+.   .+.+..|..++|.++  -+|+.+    |  ..++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g--g~~~   66 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G--GSDD   66 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e--CHHH
Confidence            6789999999999988777742        3555566655443   233445888999874  345432    3  3577


Q ss_pred             HHHHH
Q psy14086        178 LVNYV  182 (324)
Q Consensus       178 i~~fi  182 (324)
                      |.+|+
T Consensus        67 l~~~l   71 (72)
T cd03029          67 LEKYF   71 (72)
T ss_pred             HHHHh
Confidence            77775

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=96.66  E-value=0.016  Score=48.52  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEe-----cCC------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD-----CTQ------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id-----~~~------------------------------  270 (324)
                      +.+++.|..+.|++|+++.+.+.++...   .  ++.+-.+-     .+.                              
T Consensus       118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~---g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        118 PRIVYVFADPNCPYCKQFWQQARPWVDS---G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHhhc---C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            3589999999999999998877665421   1  12222221     010                              


Q ss_pred             -------------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHH
Q psy14086        271 -------------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       271 -------------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~  314 (324)
                                   .++..+...+|+++.|++++-.....+....|..+.+.|.+++.
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence                         01123566789999999987653234445689888898888764

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.62  E-value=0.017  Score=41.23  Aligned_cols=87  Identities=15%  Similarity=0.318  Sum_probs=58.7

Q ss_pred             ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec--
Q psy14086        217 ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN--  293 (324)
Q Consensus       217 ~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~--  293 (324)
                      +.+++++.. +.++|.|+...-.   .....+.++|.. ++.  .+.|+...     +.++.+.+++  .|++++|+.  
T Consensus         9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~-~R~--d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~   75 (104)
T cd03069           9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADT-LRE--SFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR   75 (104)
T ss_pred             HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHh-hhh--cCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence            346666644 4577777754322   366788888855 444  47787655     5667788888  688888832  


Q ss_pred             -----CeeeeeecCCCCHHHHHHHHHhh
Q psy14086        294 -----GVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       294 -----g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                           ......|.|..+.+.|.+||..+
T Consensus        76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          76 LSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhcccCcccccccCcCCHHHHHHHHHhh
Confidence                 12234689998999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.59  E-value=0.0057  Score=40.67  Aligned_cols=56  Identities=21%  Similarity=0.390  Sum_probs=38.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCC-ccceEEEEecCeee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVD-GFPSIYVYKNGVRT  297 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~-~~P~l~~~~~g~~~  297 (324)
                      ++.|..++|+.|......|++.         ++.+..+|++.  +++.    .+..+.. ++|.+  |-+|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~--~~~~~~~~~~~~~~~~~vP~v--~i~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDG--DPALREEMINRSGGRRTVPQI--FIGDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCC--CHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence            5688899999999998877653         35666777766  4333    3334655 89987  4566443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.58  E-value=0.0063  Score=39.74  Aligned_cols=55  Identities=16%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEEeCCeE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      ++.|.++||++|+.....|.+..        +.+..+|...+..    +.+..+..++|++++  +|+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~   60 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEF   60 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            57899999999999988887654        4555666654433    344457678887643  5543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.57  E-value=0.1  Score=36.60  Aligned_cols=104  Identities=19%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             ceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh----hCCcc-cc
Q psy14086         83 LVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ----SFDIK-SY  154 (324)
Q Consensus        83 ~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~----~~~i~-~~  154 (324)
                      ++.++.++..+...   ++..++.|--+..+.-.++.+.+.++|+.+..+.++.|+-||-+..+-+..    .|+|. .-
T Consensus         3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~   82 (120)
T cd03074           3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR   82 (120)
T ss_pred             hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence            45566666665552   356789999999999999999999999999988899999999998865544    46776 46


Q ss_pred             ceEEEEeCCe---EeeeecC---CCCHHHHHHHHHhhh
Q psy14086        155 PTLLWIESGK---KLDKFQG---SRTLETLVNYVSKMK  186 (324)
Q Consensus       155 P~~~~~~~g~---~~~~~~g---~~~~~~i~~fi~~~~  186 (324)
                      |.|-+.+-..   ......+   ..+++.|..||.+.+
T Consensus        83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             CceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            9888775421   2222222   268999999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.51  E-value=0.0052  Score=43.48  Aligned_cols=59  Identities=20%  Similarity=0.307  Sum_probs=36.8

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-hh----hhhhcCCCccceEEEEecCeee
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-KD----LCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-~~----~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      -++.|..+||++|......|.++.         +.+..+|++.... .+    +.+..+...+|.+  |-+|+.+
T Consensus         9 ~Vvvysk~~Cp~C~~ak~~L~~~~---------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i   72 (99)
T TIGR02189         9 AVVIFSRSSCCMCHVVKRLLLTLG---------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV   72 (99)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcC---------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence            366789999999999988776553         3344555554101 22    2333466789997  5666544

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=96.48  E-value=0.0062  Score=43.78  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----cchhhhhhcCCCccceEEEEecCeee
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----LSKDLCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      -++.|..+||++|+.....|.+...+   .   -.|..+|.+..     ....+.+..|...+|.+  |-+|+-+
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~i~---~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~i   80 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFSFK---R---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSI   80 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCC---c---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEE
Confidence            47789999999999999888776521   0   12444444431     01345555677889999  4455443

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.48  E-value=0.0074  Score=39.95  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=39.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEecCee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYKNGVR  296 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~~g~~  296 (324)
                      ++.|+.+||+.|+.....|++.         ++.+..+|+..  ++    ++.+..+...+|.+  |-+|+.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~--~~~~~~el~~~~g~~~vP~v--~i~~~~   61 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDI--FPERKAELEERTGSSVVPQI--FFNEKL   61 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCC--CHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            5678899999999998877753         35677777776  33    34455566788988  445543

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.43  E-value=0.012  Score=39.05  Aligned_cols=50  Identities=14%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhh----hhhCCcc-ccceEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI----CQSFDIK-SYPTLL  158 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~-~~P~~~  158 (324)
                      +++|..++|++|......|++.        ++.+-.+|++.++..    .+..|.. ++|.++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~   56 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF   56 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence            5689999999999988888762        356666676655433    3345666 899775

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.43  E-value=0.0051  Score=41.44  Aligned_cols=51  Identities=14%  Similarity=0.352  Sum_probs=34.8

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhh----hhhCCccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI----CQSFDIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~P~~~~  159 (324)
                      +++|..++|++|......|++.        ++.+-.+|++.++..    .+..|..++|++++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            3678999999999999888753        244555555554433    33447778998744

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.39  E-value=0.066  Score=37.52  Aligned_cols=104  Identities=18%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             eeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCC
Q psy14086        211 VVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVD  283 (324)
Q Consensus       211 v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~  283 (324)
                      +..++..++.+...+   +..++.|-.+..+...++.+++.++|++ ...++++.|++||-+.  .+-+    .+.|+|.
T Consensus         3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~-nt~np~LsiIWIDPD~--FPllv~yWektF~ID   79 (120)
T cd03074           3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARD-NTDNPDLSIIWIDPDD--FPLLVPYWEKTFGID   79 (120)
T ss_pred             hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHh-cCcCCCceEEEECCcc--CchhhHHHHhhcCcc
Confidence            345556665555533   4688899988888999999999999976 5566789999999877  5544    3457765


Q ss_pred             -ccceEEEEe--cCe-eeeeecCC---CCHHHHHHHHHhhc
Q psy14086        284 -GFPSIYVYK--NGV-RTAEYNGS---RDLEELYQFILKHK  317 (324)
Q Consensus       284 -~~P~l~~~~--~g~-~~~~~~g~---~~~~~l~~fi~~~~  317 (324)
                       .-|.|-+..  +.. ......+.   -+.++|.+||.+.+
T Consensus        80 l~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          80 LFRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             cCCCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence             458887774  222 22223333   57899999998754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.38  E-value=0.015  Score=40.89  Aligned_cols=63  Identities=14%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             hhHHHHhcCCCEEEEEe----CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086         89 ESFEKYVSLGNHFVKFY----APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW  159 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  159 (324)
                      +...+++.+++++|+-.    .+||++|......|.+..        +.+..+|+..++.    +.+..|-..+|.+++
T Consensus         3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365         3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            44556666766655433    289999999888887742        5566667655443    334456678897754

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=96.35  E-value=0.073  Score=41.20  Aligned_cols=84  Identities=25%  Similarity=0.389  Sum_probs=59.8

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------c----------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------L----------------  272 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------~----------------  272 (324)
                      ...++.|++..|++|..+.+.+.++..+ +-...++.|...+....                 .                
T Consensus        13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~-~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (162)
T PF13462_consen   13 PITVTEFFDFQCPHCAKFHEELEKLLKK-YIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN   91 (162)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHH-HTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred             CeEEEEEECCCCHhHHHHHHHHhhhhhh-ccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence            4689999999999999999999888755 42233788888776320                 0                


Q ss_pred             ---------------------------------chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        273 ---------------------------------SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       273 ---------------------------------~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                                                       ........+|+++|++++  +|+.   +.|..+.+++.+.|++
T Consensus        92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK  162 (162)
T ss_dssp             TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred             cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence                                             013334568999999977  6655   4778899999998864

...

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.35  E-value=0.016  Score=38.38  Aligned_cols=51  Identities=10%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  159 (324)
                      ++.|..++|+.|+.....|++.        .+.+..+|+..++.    +.+..+-..+|.+++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            6789999999999988888762        46677777776543    555557678897743

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.33  E-value=0.0078  Score=42.55  Aligned_cols=50  Identities=16%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-------hhhhhCCccccceEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-------SICQSFDIKSYPTLL  158 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i~~~P~~~  158 (324)
                      ++.|..+||++|.+....|.+..        +.+..+|++..+       .+.+..|.+++|.++
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf   66 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF   66 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence            67799999999999888776542        334444444332       233334677899874

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.32  E-value=0.043  Score=43.28  Aligned_cols=37  Identities=19%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEE
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA  135 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~  135 (324)
                      ....++.|+...|++|..+.+.+..+..++.+  ++.+.
T Consensus        15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~   51 (178)
T cd03019          15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFE   51 (178)
T ss_pred             CCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEE
Confidence            44569999999999999999999999998865  44444

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=96.27  E-value=0.045  Score=44.66  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=46.7

Q ss_pred             CCCCCCCceEcChhh---HHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec
Q psy14086         76 KPIVNEGLVELTEES---FEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID  138 (324)
Q Consensus        76 ~~~~~~~~~~l~~~~---f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd  138 (324)
                      ...+...+..++.+.   +-++. .+.|.++.|-+-.|++...-...|++++++|.+  .+.|..|-
T Consensus        77 ~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d--~adFl~VY  141 (237)
T PF00837_consen   77 GPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD--VADFLIVY  141 (237)
T ss_pred             CCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh--hhheehhh
Confidence            456677788887766   34444 455889999999999999999999999999987  44455443

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.27  E-value=0.01  Score=41.81  Aligned_cols=65  Identities=20%  Similarity=0.368  Sum_probs=41.6

Q ss_pred             ccccccCCcEEEEEeC----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh----hhhhcCCCccceEEE
Q psy14086        219 FNDVIKSGTVFIKFFA----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD----LCNQEGVDGFPSIYV  290 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~P~l~~  290 (324)
                      ..+.+.+++++|+-..    +||++|......|.+..         +.|..+|...  +++    +.+..|...+|.+  
T Consensus         5 v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~---------i~~~~~di~~--~~~~~~~l~~~tg~~tvP~v--   71 (97)
T TIGR00365         5 IKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACG---------VPFAYVNVLE--DPEIRQGIKEYSNWPTIPQL--   71 (97)
T ss_pred             HHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcC---------CCEEEEECCC--CHHHHHHHHHHhCCCCCCEE--
Confidence            3445556666665542    89999999988876653         4456677755  343    3344566688888  


Q ss_pred             EecCee
Q psy14086        291 YKNGVR  296 (324)
Q Consensus       291 ~~~g~~  296 (324)
                      |-+|+-
T Consensus        72 fi~g~~   77 (97)
T TIGR00365        72 YVKGEF   77 (97)
T ss_pred             EECCEE
Confidence            455643

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.25  E-value=0.024  Score=40.09  Aligned_cols=90  Identities=18%  Similarity=0.242  Sum_probs=58.5

Q ss_pred             ccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCC-ccceEEE
Q psy14086        217 ENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVD-GFPSIYV  290 (324)
Q Consensus       217 ~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~-~~P~l~~  290 (324)
                      +.++++++.   ++++|+=.++.|+-+......|++.... ...  .+.++.+|.-.  +-.+.++++|||. .-|-+++
T Consensus         8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~-~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il   84 (105)
T PF11009_consen    8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEE-SPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL   84 (105)
T ss_dssp             HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHH-HT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred             HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhc-CCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence            457777643   5788877889999999999999888844 333  37888888765  2245778899997 6899999


Q ss_pred             EecCeeeeeec-CCCCHHHH
Q psy14086        291 YKNGVRTAEYN-GSRDLEEL  309 (324)
Q Consensus       291 ~~~g~~~~~~~-g~~~~~~l  309 (324)
                      +++|+.+..-. +..+.+.|
T Consensus        85 i~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   85 IKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EETTEEEEEEEGGG-SHHHH
T ss_pred             EECCEEEEECccccCCHHhc
Confidence            99998864322 34666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.19  E-value=0.0083  Score=41.61  Aligned_cols=63  Identities=24%  Similarity=0.474  Sum_probs=40.5

Q ss_pred             ccccCCcEEEEEeC----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----hhhhhcCCCccceEEEEe
Q psy14086        221 DVIKSGTVFIKFFA----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----DLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       221 ~~~~~~~~~v~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~P~l~~~~  292 (324)
                      +.+.+++++|+-.+    +||++|......|++..         +.|..+|...  ++    .+.+..|...+|.+  |-
T Consensus         3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~--~~~~~~~l~~~~g~~tvP~v--fi   69 (90)
T cd03028           3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILE--DEEVRQGLKEYSNWPTFPQL--YV   69 (90)
T ss_pred             hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCC--CHHHHHHHHHHhCCCCCCEE--EE
Confidence            45556666665443    79999999887776653         4566666655  33    33444577789998  45


Q ss_pred             cCee
Q psy14086        293 NGVR  296 (324)
Q Consensus       293 ~g~~  296 (324)
                      +|+.
T Consensus        70 ~g~~   73 (90)
T cd03028          70 NGEL   73 (90)
T ss_pred             CCEE
Confidence            6643

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.18  E-value=0.022  Score=39.57  Aligned_cols=59  Identities=17%  Similarity=0.357  Sum_probs=43.5

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--c------------------------------chhhhhh
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--Q------------------------------HRSICQS  148 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~------------------------------~~~~~~~  148 (324)
                      +..|+.+.|+.|..+.+.++++.....+  ++.+......  .                              +...++.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA   78 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            3679999999999999999999866655  5555544332  1                              1345677


Q ss_pred             CCccccceEEEEe
Q psy14086        149 FDIKSYPTLLWIE  161 (324)
Q Consensus       149 ~~i~~~P~~~~~~  161 (324)
                      +|+.++|++++..
T Consensus        79 ~g~~g~Pt~v~~~   91 (98)
T cd02972          79 LGVTGTPTFVVNG   91 (98)
T ss_pred             cCCCCCCEEEECC
Confidence            8999999998754

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG3171|consensus

Probab=96.13  E-value=0.016  Score=45.85  Aligned_cols=100  Identities=20%  Similarity=0.340  Sum_probs=77.1

Q ss_pred             ceEcC-hhhHHHHhcCC----CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         83 LVELT-EESFEKYVSLG----NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        83 ~~~l~-~~~f~~~~~~~----~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      |.+++ .+.|...+.+.    ..+|..|-+....|..+...+.=||..|.-   +.|.++-.+ +.....+|..+.+|++
T Consensus       140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss-~~gas~~F~~n~lP~L  215 (273)
T KOG3171|consen  140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSS-NTGASDRFSLNVLPTL  215 (273)
T ss_pred             EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeec-cccchhhhcccCCceE
Confidence            55554 45677776443    247999999999999999999999999984   999998654 3456788999999999


Q ss_pred             EEEeCCeEeeeec-------CCCCHHHHHHHHHhhh
Q psy14086        158 LWIESGKKLDKFQ-------GSRTLETLVNYVSKMK  186 (324)
Q Consensus       158 ~~~~~g~~~~~~~-------g~~~~~~i~~fi~~~~  186 (324)
                      .+|++|+.+..|.       ..+.+.++..|++.+-
T Consensus       216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g  251 (273)
T KOG3171|consen  216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG  251 (273)
T ss_pred             EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence            9999997654332       2366778888888764

>KOG3170|consensus

Probab=96.08  E-value=0.069  Score=41.95  Aligned_cols=99  Identities=24%  Similarity=0.356  Sum_probs=72.7

Q ss_pred             CCceEcChhhHHHHh---cCCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         81 EGLVELTEESFEKYV---SLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~---~~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ..|..++...|-+.+   ..+.| +|..|...-+.|.-+...|+.+|.+|+.   ++|+++=.+..  + .-|-=...||
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c--I-pNYPe~nlPT  164 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC--I-PNYPESNLPT  164 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc--c-CCCcccCCCe
Confidence            358888888887666   34444 7999999999999999999999999986   88888754421  1 1233356899


Q ss_pred             EEEEeCCeEeeeecC------C-CCHHHHHHHHHhh
Q psy14086        157 LLWIESGKKLDKFQG------S-RTLETLVNYVSKM  185 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g------~-~~~~~i~~fi~~~  185 (324)
                      +++|..|.....+.|      . .+.+++..++-+.
T Consensus       165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence            999988865444443      2 5788888877653

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=95.95  E-value=0.071  Score=43.36  Aligned_cols=38  Identities=16%  Similarity=0.512  Sum_probs=29.0

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEE
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAK  136 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~  136 (324)
                      .++.++.|+.-.|++|..+.+.+   ..+.+.+.+  ++.|..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~   77 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTK   77 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEE
Confidence            34569999999999999999866   777888766  444443

>PRK10824 glutaredoxin-4; Provisional

Probab=95.92  E-value=0.021  Score=41.41  Aligned_cols=63  Identities=14%  Similarity=0.252  Sum_probs=38.5

Q ss_pred             hhHHHHhcCCCEEEEEeC----CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086         89 ESFEKYVSLGNHFVKFYA----PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW  159 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  159 (324)
                      +..++.+.+++++|+--.    |+|++|.+....|..+.        +.+..+|...+..    +.+.-|-+.+|.+++
T Consensus         6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824          6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            345566667666554333    69999999998887764        2333344444433    333346667887765

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.86  E-value=0.028  Score=38.93  Aligned_cols=62  Identities=16%  Similarity=0.372  Sum_probs=38.5

Q ss_pred             HHhcCCCEEEEEeC----CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEEeCCe
Q psy14086         93 KYVSLGNHFVKFYA----PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        93 ~~~~~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~  164 (324)
                      +++.+++++|+-..    +||++|......|++..        +.|..+|+..+..    +.+..|-+++|.+++  +|+
T Consensus         3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~   72 (90)
T cd03028           3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE   72 (90)
T ss_pred             hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence            44556665554332    79999999888887653        4455556554443    344457778998743  553

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.021  Score=38.58  Aligned_cols=56  Identities=20%  Similarity=0.459  Sum_probs=36.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc---hhhhhhc-CCCccceEEEEecCe
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS---KDLCNQE-GVDGFPSIYVYKNGV  295 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~---~~~~~~~-~i~~~P~l~~~~~g~  295 (324)
                      +++|..++|++|+.....|.+.         ++.|..++.+..+.   .+..+.- |..++|.|+  -+|+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~   62 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGK   62 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCE
Confidence            5788999999999998777733         35566666655211   1223333 678999984  4554

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.014  Score=39.48  Aligned_cols=51  Identities=14%  Similarity=0.317  Sum_probs=35.4

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-----hhhhhC-CccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-----SICQSF-DIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-----~~~~~~-~i~~~P~~~~  159 (324)
                      +++|..++|++|......|.+.        .+.|..+|.+...     ...++. |.+++|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            5789999999999988888732        3555555544332     344444 7889998776

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=95.66  E-value=0.053  Score=37.61  Aligned_cols=61  Identities=26%  Similarity=0.410  Sum_probs=42.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc------------------------------chhhhh
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL------------------------------SKDLCN  278 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~------------------------------~~~~~~  278 (324)
                      ++.|+++.|+.|..+.+.+.++. .....  ++.+.........                              +.....
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLL-YADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR   77 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHH-hhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            46899999999999999999986 32334  4555555432210                              123456


Q ss_pred             hcCCCccceEEEEe
Q psy14086        279 QEGVDGFPSIYVYK  292 (324)
Q Consensus       279 ~~~i~~~P~l~~~~  292 (324)
                      ..|+.++|++++..
T Consensus        78 ~~g~~g~Pt~v~~~   91 (98)
T cd02972          78 ALGVTGTPTFVVNG   91 (98)
T ss_pred             HcCCCCCCEEEECC
Confidence            78999999997754

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.65  E-value=0.53  Score=34.59  Aligned_cols=85  Identities=20%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce-EEEEecCeeeee----
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS-IYVYKNGVRTAE----  299 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~-l~~~~~g~~~~~----  299 (324)
                      ++.++|-|...|-+.|..+-..+.++|.+ ...  -..++.+|.++  -+++.+.|.+. -|. +.+|-.++....    
T Consensus        20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~-v~~--~a~IY~vDi~~--Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~Gt   93 (133)
T PF02966_consen   20 DRVVVIRFGRDWDPVCMQMDEILYKIAEK-VKN--FAVIYLVDIDE--VPDFNQMYELY-DPCTVMFFFRNKHMMVDFGT   93 (133)
T ss_dssp             SSEEEEEEE-TTSHHHHHHHHHHHHHHHH-HTT--TEEEEEEETTT--THCCHHHTTS--SSEEEEEEETTEEEEEESSS
T ss_pred             ceEEEEEeCCCCCccHHHHHHHHHHHHHH-hhc--ceEEEEEEccc--chhhhcccccC-CCeEEEEEecCeEEEEEecC
Confidence            35799999999999999999999999966 333  37888899998  89999999998 775 555534443211    


Q ss_pred             -----ecCC-CCHHHHHHHHHh
Q psy14086        300 -----YNGS-RDLEELYQFILK  315 (324)
Q Consensus       300 -----~~g~-~~~~~l~~fi~~  315 (324)
                           ..+. .+.+++.+.++-
T Consensus        94 gnnnKin~~~~~kqe~iDiie~  115 (133)
T PF02966_consen   94 GNNNKINWAFEDKQEFIDIIET  115 (133)
T ss_dssp             SSSSSBCS--SCHHHHHHHHHH
T ss_pred             CCccEEEEEcCcHHHHHHHHHH
Confidence                 2222 346777777764

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>KOG3170|consensus

Probab=95.58  E-value=0.077  Score=41.70  Aligned_cols=100  Identities=17%  Similarity=0.349  Sum_probs=73.1

Q ss_pred             CCeeEecccccccccc---CC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIK---SG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~---~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +.|..|++.+|-.-+.   .+ .|+|..|...-+.|+-+..+++.+|.+ |..   ++|+++-++.- .    .-|-=..
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~k-fp~---iKFVki~at~c-I----pNYPe~n  161 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACK-FPQ---IKFVKIPATTC-I----PNYPESN  161 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhc-CCc---ceEEecccccc-c----CCCcccC
Confidence            6799999999766552   23 488999999999999999999999966 544   88888776551 1    1233347


Q ss_pred             cceEEEEecCeeeee------ecCC-CCHHHHHHHHHhhc
Q psy14086        285 FPSIYVYKNGVRTAE------YNGS-RDLEELYQFILKHK  317 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~------~~g~-~~~~~l~~fi~~~~  317 (324)
                      .|||++|..|.....      +-|. .+.+++..++-+..
T Consensus       162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag  201 (240)
T KOG3170|consen  162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG  201 (240)
T ss_pred             CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence            899999988854322      3333 57899999987754

>PRK10638 glutaredoxin 3; Provisional

Probab=95.53  E-value=0.029  Score=38.19  Aligned_cols=58  Identities=12%  Similarity=0.323  Sum_probs=38.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEecCeee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      ++.|..+||+.|......+++.         ++.+..+|++..  ...++.+..+...+|++  |-+|+.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i   63 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI   63 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            5678889999999998777754         345666777651  11233444577789987  4456443

>KOG1752|consensus

Probab=95.31  E-value=0.14  Score=36.30  Aligned_cols=63  Identities=14%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             hHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-hh----hhhCCccccceEEE
Q psy14086         90 SFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-SI----CQSFDIKSYPTLLW  159 (324)
Q Consensus        90 ~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-~~----~~~~~i~~~P~~~~  159 (324)
                      .+.+.+.+++ +|.|..+||++|..+...|..    +..  ...++.+|-..+. .+    .+.-|-+.+|.+++
T Consensus         6 ~v~~~i~~~~-VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen    6 KVRKMISENP-VVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             HHHHHhhcCC-EEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            3555555555 566999999999997777777    333  5677777755432 23    22334557897765

>PRK10638 glutaredoxin 3; Provisional

Probab=95.29  E-value=0.041  Score=37.41  Aligned_cols=51  Identities=12%  Similarity=0.225  Sum_probs=35.9

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhCCccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSFDIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~  159 (324)
                      +++|..++|++|......+++.        .+.+..+|++.+.    .+.+..|..++|++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5678899999999988887753        3556666665443    3445557778997743

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.29  E-value=0.22  Score=35.75  Aligned_cols=93  Identities=12%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             eEecc-ccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        212 VSLTS-ENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       212 ~~l~~-~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      ..++. +.++.++..  +.++|-|+...-+   .....+.++|.. ++.  .+.|+...     +.++.+.+++. .|.+
T Consensus         3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~-~Rd--d~~F~~t~-----~~~~~~~~~~~-~~~v   70 (107)
T cd03068           3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANS-LRE--DYKFHHTF-----DSEIFKSLKVS-PGQL   70 (107)
T ss_pred             eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHh-ccc--CCEEEEEC-----hHHHHHhcCCC-CCce
Confidence            44433 346776643  4566666654322   356678888855 444  47786654     56677788885 6777


Q ss_pred             EEEec-------CeeeeeecCC-CCHHH-HHHHHHhh
Q psy14086        289 YVYKN-------GVRTAEYNGS-RDLEE-LYQFILKH  316 (324)
Q Consensus       289 ~~~~~-------g~~~~~~~g~-~~~~~-l~~fi~~~  316 (324)
                      ++|+.       ......|.|. .+.++ |.+||.++
T Consensus        71 vl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          71 VVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             EEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence            77732       2234578887 56655 99999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=95.25  E-value=0.071  Score=42.11  Aligned_cols=27  Identities=22%  Similarity=0.621  Sum_probs=22.2

Q ss_pred             EEeCCCCHhHhhHHHHHHHHHHhcCCC
Q psy14086        103 KFYAPWCGHCQSLAPVWQELASHFKTE  129 (324)
Q Consensus       103 ~f~~~~c~~c~~~~~~~~~la~~~~~~  129 (324)
                      +|..|.|+.|-...|.|+++...+..+
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~   28 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNK   28 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence            689999999999999999999999883

>PRK10824 glutaredoxin-4; Provisional

Probab=95.19  E-value=0.029  Score=40.65  Aligned_cols=66  Identities=20%  Similarity=0.332  Sum_probs=39.1

Q ss_pred             ccccccCCcEEEEEeC----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh----hcCCCccceEEE
Q psy14086        219 FNDVIKSGTVFIKFFA----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYV  290 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~----~~~i~~~P~l~~  290 (324)
                      .++.+++++++|+--+    |||++|+.....|..+.         +.+..+|...  ++++..    .-+-..+|.|  
T Consensus         8 v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~--d~~~~~~l~~~sg~~TVPQI--   74 (115)
T PRK10824          8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQ--NPDIRAELPKYANWPTFPQL--   74 (115)
T ss_pred             HHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecC--CHHHHHHHHHHhCCCCCCeE--
Confidence            4455556666665443    69999999988887763         2333455554  343333    2345567766  


Q ss_pred             EecCeee
Q psy14086        291 YKNGVRT  297 (324)
Q Consensus       291 ~~~g~~~  297 (324)
                      |-+|+-+
T Consensus        75 FI~G~~I   81 (115)
T PRK10824         75 WVDGELV   81 (115)
T ss_pred             EECCEEE
Confidence            5566443

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.27  Score=42.56  Aligned_cols=135  Identities=16%  Similarity=0.273  Sum_probs=94.1

Q ss_pred             cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086         31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW  108 (324)
Q Consensus        31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~  108 (324)
                      .-|++.+=+.|. ...++|.|-.-.+++.+++...+.-           ...-..++.+-.++..  .....+=.|++-.
T Consensus        60 RkpSF~i~r~g~-~~gv~FAglPlGHEftSlVLaLlqv-----------~G~ppk~~q~vieqik~i~g~~~FETy~Slt  127 (520)
T COG3634          60 RKPSFSINRPGE-DQGVRFAGLPLGHEFTSLVLALLQV-----------GGHPPKEDQDVIEQIKAIDGDFHFETYFSLT  127 (520)
T ss_pred             cCCceeecCCCc-ccceEEecCcccchHHHHHHHHHHh-----------cCCCCchhHHHHHHHHhcCCceeEEEEEEee
Confidence            348999988776 6678999988777776666654431           0012234444444443  3344588888999


Q ss_pred             CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      |..|-.....+.-.+---.   ++.-..+|..-..+-.+.-+|-++|++++  +|+..  -+|..+.++|.+-|..
T Consensus       128 C~nCPDVVQALN~msvlNp---~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f--g~GRmtleeilaki~~  196 (520)
T COG3634         128 CHNCPDVVQALNLMSVLNP---RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILAKIDT  196 (520)
T ss_pred             ccCChHHHHHHHHHHhcCC---CceeEEecchhhHhHHHhccceecceEEE--cchhh--cccceeHHHHHHHhcC
Confidence            9999988888877665533   69999999887777777779999998875  55543  3677788888777765

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=95.04  E-value=0.26  Score=40.34  Aligned_cols=51  Identities=18%  Similarity=0.274  Sum_probs=40.3

Q ss_pred             CCCCCeeEecccc---cccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC
Q psy14086        206 VKPEPVVSLTSEN---FNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN  257 (324)
Q Consensus       206 ~~~~~v~~l~~~~---~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~  257 (324)
                      ..+.+|..+++++   +.++.+ ++|.++.|.+=.|++-..-...+++++++ +..
T Consensus        79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~-f~d  133 (237)
T PF00837_consen   79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVED-FSD  133 (237)
T ss_pred             CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHH-hhh
Confidence            3457899999877   445554 46999999999999988889999999977 444

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.03  E-value=0.37  Score=34.55  Aligned_cols=89  Identities=12%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             ChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-
Q psy14086         87 TEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-  163 (324)
Q Consensus        87 ~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-  163 (324)
                      +.+.++.++..  ...+|.|+...-.   .....|.++|..++.  .+.|+...   ...+.+.+++. .|.+++|++. 
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~   77 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEK   77 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEC---hHHHHHhcCCC-CCceEEECcHH
Confidence            45567777643  4556777766443   356789999999988  78887543   45677888876 5668888443 


Q ss_pred             ------eEeeeecCC-CCHHH-HHHHHHh
Q psy14086        164 ------KKLDKFQGS-RTLET-LVNYVSK  184 (324)
Q Consensus       164 ------~~~~~~~g~-~~~~~-i~~fi~~  184 (324)
                            .....|.|. .+.++ |.+||+.
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence                  334567877 56656 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>KOG1752|consensus

Probab=93.09  E-value=0.3  Score=34.71  Aligned_cols=66  Identities=17%  Similarity=0.368  Sum_probs=39.6

Q ss_pred             cccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh----hcCCCccceEEEEecCe
Q psy14086        220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN----QEGVDGFPSIYVYKNGV  295 (324)
Q Consensus       220 ~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~----~~~i~~~P~l~~~~~g~  295 (324)
                      .+.+.+++ +|.|..+||++|..+...|..+.       ....+..+|-... ..++.+    .-+.+.+|.+  |-+|+
T Consensus         8 ~~~i~~~~-VVifSKs~C~~c~~~k~ll~~~~-------v~~~vvELD~~~~-g~eiq~~l~~~tg~~tvP~v--FI~Gk   76 (104)
T KOG1752|consen    8 RKMISENP-VVIFSKSSCPYCHRAKELLSDLG-------VNPKVVELDEDED-GSEIQKALKKLTGQRTVPNV--FIGGK   76 (104)
T ss_pred             HHHhhcCC-EEEEECCcCchHHHHHHHHHhCC-------CCCEEEEccCCCC-cHHHHHHHHHhcCCCCCCEE--EECCE
Confidence            33443444 45688999999999877777621       2456666775542 224433    2345578887  44554


Q ss_pred             e
Q psy14086        296 R  296 (324)
Q Consensus       296 ~  296 (324)
                      -
T Consensus        77 ~   77 (104)
T KOG1752|consen   77 F   77 (104)
T ss_pred             E
Confidence            3

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.44  E-value=5.2  Score=34.98  Aligned_cols=174  Identities=15%  Similarity=0.182  Sum_probs=110.7

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCCHHH
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRTLET  177 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~  177 (324)
                      +..+.-........+.+...+++++..-.   ++.+-.-+           ....-|++.+-++|.. -.+|.|-.--.+
T Consensus        20 ~i~l~asldds~~s~~~~~ll~eia~~S~---kis~~~~~-----------~~~RkpSF~i~r~g~~~gv~FAglPlGHE   85 (520)
T COG3634          20 PIELVASLDDSEKSKEIKELLDEIASLSD---KISLEEDS-----------DLVRKPSFSINRPGEDQGVRFAGLPLGHE   85 (520)
T ss_pred             CeEEEEecCcccccHHHHHHHHHHHhhcc---ceeeeecC-----------ccccCCceeecCCCcccceEEecCcccch
Confidence            34344444556667778888888887642   45544321           1245698988888743 356888766677


Q ss_pred             HHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhh
Q psy14086        178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLL  255 (324)
Q Consensus       178 i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~  255 (324)
                      +..++..++.-.                   ..-..+..+-++++-  +..-.|=.|++-.|.-|-.+...++-++ - .
T Consensus        86 ftSlVLaLlqv~-------------------G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~ms-v-l  144 (520)
T COG3634          86 FTSLVLALLQVG-------------------GHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMS-V-L  144 (520)
T ss_pred             HHHHHHHHHHhc-------------------CCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHH-h-c
Confidence            888887776522                   111111222233221  2234666777888999999888888877 3 3


Q ss_pred             cCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        256 DNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       256 ~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +  +++.-..||...  ..+-.+.-+|.++|++  |.+|+.+.  .|..+.+++..-|..
T Consensus       145 N--p~I~H~~IdGa~--Fq~Evear~IMaVPtv--flnGe~fg--~GRmtleeilaki~~  196 (520)
T COG3634         145 N--PRIKHTAIDGAL--FQDEVEARNIMAVPTV--FLNGEEFG--QGRMTLEEILAKIDT  196 (520)
T ss_pred             C--CCceeEEecchh--hHhHHHhccceecceE--EEcchhhc--ccceeHHHHHHHhcC
Confidence            3  367777888655  5555677789999998  56776653  577888888776653

>KOG2640|consensus

Probab=92.41  E-value=0.061  Score=45.35  Aligned_cols=85  Identities=24%  Similarity=0.481  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec-cccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID-CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd-~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      .+-..||+.||+..+...|.++-....|..   +....++ ...-+.+..++|+.+.|++.+....-.. +|.|.++...
T Consensus        78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~-~~~~~r~l~s  153 (319)
T KOG2640|consen   78 YVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPA-SYRGERDLAS  153 (319)
T ss_pred             cccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccccch-hhcccccHHH
Confidence            456899999999999999999998888863   4444343 3355788999999999999887665443 5899999999


Q ss_pred             HHHHHHhhhC
Q psy14086        178 LVNYVSKMKG  187 (324)
Q Consensus       178 i~~fi~~~~~  187 (324)
                      |++|..+.+.
T Consensus       154 Lv~fy~~i~~  163 (319)
T KOG2640|consen  154 LVNFYTEITP  163 (319)
T ss_pred             HHHHHHhhcc
Confidence            9999988875

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=92.40  E-value=2.7  Score=29.30  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=51.0

Q ss_pred             CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCC
Q psy14086         97 LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRT  174 (324)
Q Consensus        97 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~  174 (324)
                      .+++ ++.|..+. ..|..+...+++++..-.   ++.+...+...           ..|++.+..+|+. -.+|.|-..
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~   82 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM   82 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence            3444 56666655 889888888888887642   57665433211           4799999877633 267999888


Q ss_pred             HHHHHHHHHhh
Q psy14086        175 LETLVNYVSKM  185 (324)
Q Consensus       175 ~~~i~~fi~~~  185 (324)
                      -.++..||...
T Consensus        83 GhEf~Slilai   93 (94)
T cd02974          83 GHEFTSLVLAL   93 (94)
T ss_pred             chhHHHHHHHh
Confidence            88898888764

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=92.31  E-value=1.3  Score=31.26  Aligned_cols=92  Identities=7%  Similarity=0.062  Sum_probs=55.2

Q ss_pred             cCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCC----C---CeEEEEEecCCccchhhhhhcCCC-ccceEEEEe--
Q psy14086        224 KSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNK----H---GIVIAKVDCTQELSKDLCNQEGVD-GFPSIYVYK--  292 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~----~---~~~~~~id~~~~~~~~~~~~~~i~-~~P~l~~~~--  292 (324)
                      ...+++|.|....-. .-+...+.++.+|.+++...    .   -+-|+..+-+.  ...+..-.++. ..|-+++..  
T Consensus        13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~--tdsLRDf~nL~d~~P~LviLDip   90 (116)
T cd03071          13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDM--TDSLRDYTNLPEAAPLLTILDMS   90 (116)
T ss_pred             cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchH--HHHHHHhcCCCccCceEEEEecc
Confidence            467899999865544 46667778887776553221    1   13333333222  23334444554 578888873  


Q ss_pred             cCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        293 NGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       293 ~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +.+++..-....|.+.+.+||.+++
T Consensus        91 ~r~~~v~~~eeIT~e~~~~fv~~yl  115 (116)
T cd03071          91 ARAKYVMDVEEITPAIVEAFVSDFL  115 (116)
T ss_pred             ccceEeCchHhcCHHHHHHHHHHhh
Confidence            3333332234689999999999875

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=92.28  E-value=0.24  Score=44.80  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=37.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh---hhhh---------cCCCccceEEEEecCe
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD---LCNQ---------EGVDGFPSIYVYKNGV  295 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~---~~~~---------~~i~~~P~l~~~~~g~  295 (324)
                      +++|..+||++|......|.+.         ++.|..+|++.  .+.   +.+.         .|..++|.+++  +|+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~--~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~   69 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDD--DVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV   69 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCC--ChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence            6789999999999887766653         36677788776  332   2222         36678999944  454

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=91.94  E-value=0.43  Score=36.34  Aligned_cols=28  Identities=39%  Similarity=0.769  Sum_probs=24.3

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTK  253 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~  253 (324)
                      +..++.|+.++|++|+.+.+.+.++..+
T Consensus         6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~   33 (154)
T cd03023           6 DVTIVEFFDYNCGYCKKLAPELEKLLKE   33 (154)
T ss_pred             CEEEEEEECCCChhHHHhhHHHHHHHHH
Confidence            4688999999999999999999887644

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=91.92  E-value=4  Score=30.37  Aligned_cols=74  Identities=16%  Similarity=0.339  Sum_probs=54.0

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc----ccceEEEEeCCeEeeeecCCCCH
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK----SYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~----~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      -++.|++|.|+=|......++.     .   .+.+-.+..+....+-+++||.    +--|.++  +|.   ..+|...+
T Consensus        27 ~~~vyksPnCGCC~~w~~~mk~-----~---Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa   93 (149)
T COG3019          27 EMVVYKSPNCGCCDEWAQHMKA-----N---GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPA   93 (149)
T ss_pred             eEEEEeCCCCccHHHHHHHHHh-----C---CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCH
Confidence            3788999999999987777662     1   3666666667777888889986    2334443  442   25788999


Q ss_pred             HHHHHHHHhhh
Q psy14086        176 ETLVNYVSKMK  186 (324)
Q Consensus       176 ~~i~~fi~~~~  186 (324)
                      ++|..++.+.-
T Consensus        94 ~aI~~ll~~~p  104 (149)
T COG3019          94 EAIARLLAEKP  104 (149)
T ss_pred             HHHHHHHhCCC
Confidence            99999998754

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=91.66  E-value=0.84  Score=29.86  Aligned_cols=61  Identities=11%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  162 (324)
                      +..|-+...+........++++-+.+. ...+.+-.+|..+++.+++.++|-..|+++-..+
T Consensus         4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P   64 (72)
T cd02978           4 LRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP   64 (72)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence            566777777888888888888888775 3489999999999999999999999999875433

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=91.66  E-value=0.33  Score=43.93  Aligned_cols=51  Identities=12%  Similarity=0.255  Sum_probs=36.7

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh---hhhh---------CCccccceEEE
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS---ICQS---------FDIKSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~---~~~~---------~~i~~~P~~~~  159 (324)
                      ++.|..+||++|......|.+.        ++.|-.+|+++.+.   +.++         .|.+++|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999988777763        36777777775542   2222         46778998865

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=91.25  E-value=1.2  Score=33.02  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             chhhhhhcCCCccceEEEEecCe-----------eeeeecCCCCHHHHHHHHHh
Q psy14086        273 SKDLCNQEGVDGFPSIYVYKNGV-----------RTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       273 ~~~~~~~~~i~~~P~l~~~~~g~-----------~~~~~~g~~~~~~l~~fi~~  315 (324)
                      ++.+.++|+|+.+|++++.+++.           .+....|..+.+.-.+.+.+
T Consensus        60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~  113 (130)
T TIGR02742        60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ  113 (130)
T ss_pred             ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence            68999999999999999998764           34556688887776666654

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>KOG2640|consensus

Probab=90.06  E-value=0.16  Score=42.86  Aligned_cols=87  Identities=22%  Similarity=0.414  Sum_probs=62.4

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      ..+-+.||+.||+..+...|.+.-.. ..+....  .++.=+...  -+.+.+.+++.+.|++.+....-. ..|.|.++
T Consensus        77 ~~vs~~fy~s~C~fsr~~~~~fd~~~-sl~~~i~--h~~vee~~~--lpsv~s~~~~~~~ps~~~~n~t~~-~~~~~~r~  150 (319)
T KOG2640|consen   77 DYVSLLFYASWCPFSRAVRPEFDVRS-SLFSSIQ--HFAVEESQA--LPSVFSSYGIHSEPSNLMLNQTCP-ASYRGERD  150 (319)
T ss_pred             CcccccchhcccCcccccCcccchhh-hhccccc--cccHHHHhh--cccchhccccccCCcceeeccccc-hhhccccc
Confidence            36888999999999999999887766 3344211  122111111  356678889999999987655434 46899999


Q ss_pred             HHHHHHHHHhhcc
Q psy14086        306 LEELYQFILKHKV  318 (324)
Q Consensus       306 ~~~l~~fi~~~~~  318 (324)
                      ..+|.+|-.+.++
T Consensus       151 l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  151 LASLVNFYTEITP  163 (319)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999998876

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=89.69  E-value=1.6  Score=32.46  Aligned_cols=47  Identities=17%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             cccchhhhhhCCccccceEEEEeCCe-----------EeeeecCCCCHHHHHHHHHhh
Q psy14086        139 CTQHRSICQSFDIKSYPTLLWIESGK-----------KLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       139 ~~~~~~~~~~~~i~~~P~~~~~~~g~-----------~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ..-++.+.++|+|+.+|++++.+++.           .+....|..+.+.-.+.+.+.
T Consensus        57 v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~  114 (130)
T TIGR02742        57 VQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD  114 (130)
T ss_pred             EEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence            34578999999999999999998763           355667888888777777643

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=89.27  E-value=1.5  Score=28.66  Aligned_cols=58  Identities=14%  Similarity=0.232  Sum_probs=45.2

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      .+..|-+...+.+......+.++..++...  .+.+-.+|..+  ++++++.++|-..||++
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~--~P~lAe~~~ivAtPtLv   60 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLK--QPQLAEEDKIVATPTLV   60 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEccc--CHhHHhhCCEEEechhh
Confidence            345566666667777777777777665544  78889999999  99999999999999985

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=88.62  E-value=0.21  Score=39.42  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=17.1

Q ss_pred             cchhhhccCCCccCCceEEEecCCcccccccCCCCChHHH
Q psy14086         19 VEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTL   58 (324)
Q Consensus        19 ~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i   58 (324)
                      ++..++++++|+++||+++|........+...|..+.+.+
T Consensus       135 ~D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~  174 (176)
T PF13743_consen  135 EDQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVY  174 (176)
T ss_dssp             HHHHHHHHTT-SSSSEEEEE--------------------
T ss_pred             HHHHHHHHcCCCCCCEEEEEeccccccccccccccccccc
Confidence            4567999999999999999994332345666666655443

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=88.05  E-value=1  Score=35.26  Aligned_cols=30  Identities=30%  Similarity=0.531  Sum_probs=26.2

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTK  253 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~  253 (324)
                      ..++.++.|+...|++|+.+.+.+..+..+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~   43 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKK   43 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHh
Confidence            346789999999999999999999988755

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>KOG2507|consensus

Probab=87.31  E-value=7.1  Score=34.79  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHH-HHHHHHH--HhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC-CeEeeee
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLA-PVWQELA--SHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES-GKKLDKF  169 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~-~~~~~la--~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~  169 (324)
                      .++.++|.|.+........+. -.|....  ...-.  .+..++++..  ....+..-|.+-.+|+++++.. |..+...
T Consensus        17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi   94 (506)
T KOG2507|consen   17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI   94 (506)
T ss_pred             cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence            456788889888888777766 3443322  22222  5667777765  3456777788889999999976 8899888


Q ss_pred             cCCCCHHHHHHHHHhhhC
Q psy14086        170 QGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       170 ~g~~~~~~i~~fi~~~~~  187 (324)
                      .|..++++|..-|.+...
T Consensus        95 tg~v~adeL~~~i~Kv~~  112 (506)
T KOG2507|consen   95 TGFVTADELASSIEKVWL  112 (506)
T ss_pred             eccccHHHHHHHHHHHHH
Confidence            999999999887776543

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=86.48  E-value=3.3  Score=28.19  Aligned_cols=73  Identities=14%  Similarity=0.069  Sum_probs=55.7

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      .+-.|.+...+.+......++++-+.+-.. .+.+-.+|..+++.+++.++|-+.|+++=..+. +..+..|.++
T Consensus         5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls   77 (87)
T TIGR02654         5 VLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLS   77 (87)
T ss_pred             EEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeecccc
Confidence            355677778888888888888887765432 588889999999999999999999998755443 4455677654

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=85.97  E-value=6.3  Score=25.83  Aligned_cols=75  Identities=9%  Similarity=0.129  Sum_probs=42.0

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      +..|+.+.|+.|+...-.+....-.      +.+..+|......+ +.-+-..+|+++.-..|.....    .....|.+
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~gi~------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l----~eS~~I~~   70 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHGIP------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL----VDSSVIIS   70 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCc------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE----EcHHHHHH
Confidence            4568889999999888666554332      22333333222233 3334557998765321111111    25567888


Q ss_pred             HHHhhh
Q psy14086        181 YVSKMK  186 (324)
Q Consensus       181 fi~~~~  186 (324)
                      |+.+.+
T Consensus        71 yL~~~~   76 (77)
T cd03040          71 TLKTYL   76 (77)
T ss_pred             HHHHHc
Confidence            888765

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=85.93  E-value=15  Score=29.83  Aligned_cols=92  Identities=14%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcC-CC-C--CeEEEEeccccc---------------------------h
Q psy14086         96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFK-TE-E--DVSIAKIDCTQH---------------------------R  143 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~-~~-~--~i~~~~vd~~~~---------------------------~  143 (324)
                      +.++++|.|.-+.|+. |-.....+..+..+.. .. .  ++.|+.+|-..+                           .
T Consensus        66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~  145 (207)
T COG1999          66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE  145 (207)
T ss_pred             CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence            4567788888788874 8888877887777776 32 1  366677775432                           2


Q ss_pred             hhhhhCCcc---------------ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        144 SICQSFDIK---------------SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       144 ~~~~~~~i~---------------~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .+++.|++-               +...+++++ +|.....|.+...++.|.+.++..+.
T Consensus       146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~  205 (207)
T COG1999         146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK  205 (207)
T ss_pred             HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence            333333332               112234444 35555556666667888888777664

>KOG2507|consensus

Probab=84.83  E-value=7.5  Score=34.67  Aligned_cols=90  Identities=18%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             CCcEEEEEeCCCChhhhhhh-HhHH-HHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cCeeeeeec
Q psy14086        225 SGTVFIKFFAPWCGHCKRLA-PTWE-ELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYN  301 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~-~~~~-~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~  301 (324)
                      ++.+||.|.+........+. -.|. ..-.+....  .+.-++|++.......+..-|-+..+|+++++. .|....+..
T Consensus        18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit   95 (506)
T KOG2507|consen   18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT   95 (506)
T ss_pred             CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence            35688888887766666655 2333 222232222  466677777664456677778888999998884 677777888


Q ss_pred             CCCCHHHHHHHHHhh
Q psy14086        302 GSRDLEELYQFILKH  316 (324)
Q Consensus       302 g~~~~~~l~~fi~~~  316 (324)
                      |..+.++|..-|.+.
T Consensus        96 g~v~adeL~~~i~Kv  110 (506)
T KOG2507|consen   96 GFVTADELASSIEKV  110 (506)
T ss_pred             ccccHHHHHHHHHHH
Confidence            998999998888765

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.80  E-value=2  Score=29.91  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=41.9

Q ss_pred             ccccccCCcEEEEEe----CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC-CCccceE-EEEe
Q psy14086        219 FNDVIKSGTVFIKFF----APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG-VDGFPSI-YVYK  292 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~----~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~P~l-~~~~  292 (324)
                      +++.+++++++++.-    .|.|+.+.....++..+.        -+.|+.+|+-.  ++++++... .++.||+ -+|-
T Consensus         8 I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g--------~v~~~~vnVL~--d~eiR~~lk~~s~WPT~PQLyi   77 (105)
T COG0278           8 IQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACG--------VVDFAYVDVLQ--DPEIRQGLKEYSNWPTFPQLYV   77 (105)
T ss_pred             HHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcC--------CcceeEEeecc--CHHHHhccHhhcCCCCCceeeE
Confidence            344555566666553    266887666554443332        16788899988  788876544 3467877 4666


Q ss_pred             cCee
Q psy14086        293 NGVR  296 (324)
Q Consensus       293 ~g~~  296 (324)
                      +|+-
T Consensus        78 ~GEf   81 (105)
T COG0278          78 NGEF   81 (105)
T ss_pred             CCEE
Confidence            7643

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=84.77  E-value=0.72  Score=32.85  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCCccceEEEEe-cCeeeeee----cC
Q psy14086        230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVDGFPSIYVYK-NGVRTAEY----NG  302 (324)
Q Consensus       230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~----~g  302 (324)
                      ..|+.++|+.|+.....+++..         +.|-.+|...  ....++.+..+..+.+.--+++ .|..+...    ..
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~~---------i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~   72 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEHG---------IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD   72 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHcC---------CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence            5789999999999887666542         4444555533  1123444444443433233333 33322111    23


Q ss_pred             CCCHHHHHHHHHhh
Q psy14086        303 SRDLEELYQFILKH  316 (324)
Q Consensus       303 ~~~~~~l~~fi~~~  316 (324)
                      ..+.+++.++|.++
T Consensus        73 ~ls~~e~~~~l~~~   86 (105)
T cd02977          73 ELSDEEALELMAEH   86 (105)
T ss_pred             CCCHHHHHHHHHhC
Confidence            46788888888765

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>KOG2792|consensus

Probab=84.73  E-value=7  Score=32.49  Aligned_cols=89  Identities=10%  Similarity=0.247  Sum_probs=53.7

Q ss_pred             CEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCCCC----eEEEEeccccc--------------------------hhhhh
Q psy14086         99 NHFVKFYAPWCGH-CQSLAPVWQELASHFKTEED----VSIAKIDCTQH--------------------------RSICQ  147 (324)
Q Consensus        99 ~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~~~----i~~~~vd~~~~--------------------------~~~~~  147 (324)
                      ..+++|-=++|+. |-.....|..+..+...+..    =.|+.+|-..+                          ..+|+
T Consensus       141 w~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak  220 (280)
T KOG2792|consen  141 WSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAK  220 (280)
T ss_pred             eEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence            3478888899986 76655555555555544322    26888886432                          55666


Q ss_pred             hCCcccc--c-----------e--EEEEeCCeEeeeecCC-CCHHHHHHHHHhhhC
Q psy14086        148 SFDIKSY--P-----------T--LLWIESGKKLDKFQGS-RTLETLVNYVSKMKG  187 (324)
Q Consensus       148 ~~~i~~~--P-----------~--~~~~~~g~~~~~~~g~-~~~~~i~~fi~~~~~  187 (324)
                      +|.|-.-  |           +  ++++++......|.|. .+++++.+-|...+.
T Consensus       221 ~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~  276 (280)
T KOG2792|consen  221 KYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA  276 (280)
T ss_pred             HhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence            6665421  1           2  2344553344446664 789999888877654

>PRK09301 circadian clock protein KaiB; Provisional

Probab=84.44  E-value=4.4  Score=28.53  Aligned_cols=73  Identities=14%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      .+-.|.+...+..++....++++-+.+-.. .+.+-.+|..+++.+++.++|-+.|+++=..+. +..+..|.++
T Consensus         8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDls   80 (103)
T PRK09301          8 ILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLS   80 (103)
T ss_pred             EEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeecccc
Confidence            466777888888888888888887765442 588889999999999999999999998755443 4556778764

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=83.42  E-value=4.5  Score=29.25  Aligned_cols=24  Identities=8%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             cccchhhhhhCCccccceEEEEeC
Q psy14086        139 CTQHRSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus       139 ~~~~~~~~~~~~i~~~P~~~~~~~  162 (324)
                      ..-++.+.++|+|+.+|++++.++
T Consensus        57 v~IdP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   57 VQIDPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             eeEChhHHhhCCceEcCEEEEEcC
Confidence            445789999999999999999877

The N-terminal portion of these proteins is heterogeneous.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=83.19  E-value=4.7  Score=26.63  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=40.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL  178 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i  178 (324)
                      +..|+.++|+.|.+..-.+.+..-.|      ....++...  ...+.+.-+...+|+++.-.+|...      .....|
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y------~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------~es~~I   69 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELELDV------ILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------FESADI   69 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcCCcE------EEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------EcHHHH
Confidence            35677889999998776666544322      223332221  2234443455578987532223222      256678


Q ss_pred             HHHHHhh
Q psy14086        179 VNYVSKM  185 (324)
Q Consensus       179 ~~fi~~~  185 (324)
                      .+|+.+.
T Consensus        70 ~~yL~~~   76 (77)
T cd03041          70 VKYLFKT   76 (77)
T ss_pred             HHHHHHh
Confidence            8888753

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=83.00  E-value=3.3  Score=31.52  Aligned_cols=51  Identities=12%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             EEEEeCC------CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCc----cccceEEE
Q psy14086        101 FVKFYAP------WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDI----KSYPTLLW  159 (324)
Q Consensus       101 ~v~f~~~------~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i----~~~P~~~~  159 (324)
                      ++.|+++      +|++|......|+.+        ++.|-.+|++.+..    +.+.++-    ..+|.+++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            4667777      899999888777754        36677777765543    3344454    46786664

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=82.90  E-value=6.5  Score=25.28  Aligned_cols=68  Identities=12%  Similarity=0.149  Sum_probs=37.2

Q ss_pred             EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086        103 KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       103 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      .|+.++|+.|....-.+....-.      +....++........+..+-..+|++.. ++|...      .....|.+|+
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl~------~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l------~es~aI~~yL   69 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNIP------VEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM------AESLDIVAFI   69 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCCC------eEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe------ehHHHHHHHH
Confidence            57788999999877666554332      2333444333223333444456887643 324322      2455677776


Q ss_pred             H
Q psy14086        183 S  183 (324)
Q Consensus       183 ~  183 (324)
                      .
T Consensus        70 ~   70 (71)
T cd03037          70 D   70 (71)
T ss_pred             h
Confidence            4

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=82.85  E-value=8.4  Score=25.22  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=40.6

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEE  308 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~  308 (324)
                      +..|+.+.|+.|+..+-.+.+..         +.+-.++.+....+++ +.-+...+|+++.=..|.....+    +...
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~g---------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~----eS~~   67 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHG---------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV----DSSV   67 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCC---------CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE----cHHH
Confidence            34677789999999885555443         2233333322112333 33445579988642211111122    3577


Q ss_pred             HHHHHHhhc
Q psy14086        309 LYQFILKHK  317 (324)
Q Consensus       309 l~~fi~~~~  317 (324)
                      |.++|.+.+
T Consensus        68 I~~yL~~~~   76 (77)
T cd03040          68 IISTLKTYL   76 (77)
T ss_pred             HHHHHHHHc
Confidence            888888765

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=82.36  E-value=14  Score=25.68  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-eeeecCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-TAEYNGSR  304 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~~~~~g~~  304 (324)
                      ...++.|..+. ..|..+...++++| . ...  ++.+-..+     ..        +..|++.+..+|+. -.+|.|--
T Consensus        20 pV~l~~f~~~~-~~~~e~~~ll~e~a-~-lSd--kI~~~~~~-----~~--------~~~P~~~i~~~~~~~gIrF~GiP   81 (94)
T cd02974          20 PVELVASLDDS-EKSAELLELLEEIA-S-LSD--KITLEEDN-----DD--------ERKPSFSINRPGEDTGIRFAGIP   81 (94)
T ss_pred             CEEEEEEeCCC-cchHHHHHHHHHHH-H-hCC--ceEEEEec-----CC--------CCCCEEEEecCCCcccEEEEecC
Confidence            34566676655 88999999999998 4 223  45553222     11        14799999877643 24788876


Q ss_pred             CHHHHHHHHHhh
Q psy14086        305 DLEELYQFILKH  316 (324)
Q Consensus       305 ~~~~l~~fi~~~  316 (324)
                      .-.++..||...
T Consensus        82 ~GhEf~Slilai   93 (94)
T cd02974          82 MGHEFTSLVLAL   93 (94)
T ss_pred             CchhHHHHHHHh
Confidence            677888887653

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=82.10  E-value=2.3  Score=32.42  Aligned_cols=56  Identities=13%  Similarity=0.347  Sum_probs=34.8

Q ss_pred             EEEEeCC------CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCC----CccceEEEEecCe
Q psy14086        229 FIKFFAP------WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGV----DGFPSIYVYKNGV  295 (324)
Q Consensus       229 ~v~f~~~------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i----~~~P~l~~~~~g~  295 (324)
                      ++.|.++      +|++|..++.+|+.+         ++.|-.+|++..  ...++.+..+.    ..+|.|  |-+|+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~G~   69 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVDGR   69 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EECCE
Confidence            4566666      899999988777654         356677777651  12244444443    468877  44553

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=82.05  E-value=3.3  Score=31.84  Aligned_cols=55  Identities=11%  Similarity=0.175  Sum_probs=36.9

Q ss_pred             cCCCE-EEEEeCCCCHhHhhH-HHHHHHHHHhcCCCCCe-EEEEeccc---cchhhhhhCCc
Q psy14086         96 SLGNH-FVKFYAPWCGHCQSL-APVWQELASHFKTEEDV-SIAKIDCT---QHRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~-~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~i-~~~~vd~~---~~~~~~~~~~i  151 (324)
                      .++++ ++.|...||+.|... .+.|++...++... .+ .++.+..+   ....+++++++
T Consensus        28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHHHHHHHHhhCC
Confidence            34444 455557899999998 99999999999753 23 24444433   33457777776

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=81.92  E-value=15  Score=30.52  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       143 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ..++..+|+++.|++++-.  +   .+.|..+.++|.+.|...
T Consensus       205 ~~~a~~~gv~gTPt~~v~~--~---~~~g~~~~~~l~~~i~~~  242 (244)
T COG1651         205 YKLAQQLGVNGTPTFIVNG--K---LVPGLPDLDELKAIIDEA  242 (244)
T ss_pred             HHHHHhcCCCcCCeEEECC--e---eecCCCCHHHHHHHHHHh
Confidence            4577788999999988743  2   578888889998888764

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=81.87  E-value=2.6  Score=34.19  Aligned_cols=32  Identities=22%  Similarity=0.622  Sum_probs=24.4

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDN  257 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~  257 (324)
                      +++-+|.|++-.|++|..+.+.+   ..+. +.+..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~-~~~~~   71 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVK-KKLPE   71 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHH-HhCCC
Confidence            45679999999999999998865   5665 43444

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=81.41  E-value=6.7  Score=28.35  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             chhhhhhcCCCccceEEEEec
Q psy14086        273 SKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       273 ~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      ++.+.++|+|+.+|++++-++
T Consensus        60 dP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   60 DPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             ChhHHhhCCceEcCEEEEEcC
Confidence            689999999999999999877

The N-terminal portion of these proteins is heterogeneous.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.14  E-value=25  Score=27.10  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=53.1

Q ss_pred             CCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCCc
Q psy14086        225 SGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVDG  284 (324)
Q Consensus       225 ~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~  284 (324)
                      +++++++||. .+++.|....-.|++...++-..  ++.+.-|..+.                   +.+..+++.||+-.
T Consensus        30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~  107 (157)
T COG1225          30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG  107 (157)
T ss_pred             CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence            4578889985 35667877777777766553333  34444455443                   23456778888732


Q ss_pred             ------------cceEEEE-ecCeeeeeecCC---CCHHHHHHHHHhh
Q psy14086        285 ------------FPSIYVY-KNGVRTAEYNGS---RDLEELYQFILKH  316 (324)
Q Consensus       285 ------------~P~l~~~-~~g~~~~~~~g~---~~~~~l~~fi~~~  316 (324)
                                  .++.+++ ++|.....+...   -..+++.+.|.+.
T Consensus       108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225         108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence                        2344445 567665555332   3467777777654

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.04  E-value=6.1  Score=30.41  Aligned_cols=55  Identities=15%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---cchhhhhhCCcc
Q psy14086         97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---QHRSICQSFDIK  152 (324)
Q Consensus        97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---~~~~~~~~~~i~  152 (324)
                      .++++++||- .+++.|-...-.|++...+|... +..++.|-.+   ....++++++++
T Consensus        30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~   88 (157)
T COG1225          30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLT   88 (157)
T ss_pred             CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            3467777874 66778888888999998888753 3444444333   445667777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		9e-35
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		6e-27
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		8e-27
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		2e-26
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		3e-18
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		7e-18
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		5e-18
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-12
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		3e-17
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		6e-17
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		9e-17
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		1e-16
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		4e-16
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		3e-15
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-14
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		1e-14
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		7e-14
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		2e-14
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		3e-14
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		5e-14
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		5e-14
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		5e-12
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		1e-13
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		4e-13
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		2e-13
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		4e-12
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		2e-13
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		8e-13
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		9e-13
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		8e-07
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		1e-12
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		1e-06
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		5e-12
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		3e-09
2o7k_A	107	S. Aureus Thioredoxin Length = 107		6e-12
2o7k_A	107	S. Aureus Thioredoxin Length = 107		6e-06
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-11
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-05
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		1e-11
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		1e-10
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		2e-11
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		2e-07
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		1e-10
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		1e-04
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		1e-10
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		2e-07
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		2e-10
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		2e-04
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		2e-10
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		5e-09
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		2e-10
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		2e-04
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		3e-10
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		1e-06
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		3e-10
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		1e-09
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		2e-09
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		2e-07
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		2e-09
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		8e-09
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		2e-09
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		2e-09
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		7e-07
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		2e-09
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		7e-08
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		5e-09
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		5e-06
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		6e-09
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		6e-05
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		6e-09
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		6e-05
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		7e-09
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		5e-07
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		9e-09
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		4e-08
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		9e-09
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		1e-07
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		9e-09
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		1e-07
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		9e-09
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		4e-04
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		9e-09
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		3e-07
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		9e-09
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		1e-07
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		1e-08
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		4e-05
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		1e-08
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		4e-08
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		1e-08
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		9e-08
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		1e-08
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		2e-08
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		3e-07
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		2e-08
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		1e-07
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		2e-08
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		1e-07
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		2e-08
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		5e-08
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		2e-08
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		1e-07
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		2e-08
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		1e-04
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		2e-08
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		2e-07
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		2e-08
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		2e-07
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		2e-08
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		3e-07
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		2e-08
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		4e-07
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		3e-08
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		5e-07
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		4e-08
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		2e-07
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		4e-08
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		2e-05
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		4e-08
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		8e-04
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		4e-08
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		8e-04
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		4e-08
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		4e-08
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		3e-07
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		5e-08
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		4e-04
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		6e-08
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		6e-04
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		6e-08
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		1e-07
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		1e-07
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		5e-06
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		1e-07
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		1e-06
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		1e-07
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		8e-07
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		1e-07
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		1e-06
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		2e-07
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		1e-06
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		2e-07
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		2e-07
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		1e-06
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		2e-07
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		1e-06
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		3e-07
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		3e-07
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		1e-06
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		3e-07
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		3e-07
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		9e-06
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-07
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-05
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		4e-07
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		1e-06
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		4e-07
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		7e-04
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		4e-07
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		4e-05
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		6e-07
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		3e-05
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		6e-07
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		3e-04
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		6e-07
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		1e-05
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		7e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		7e-07
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		7e-07
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		8e-07
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		1e-05
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		9e-07
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		1e-04
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		1e-06
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		1e-06
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		7e-06
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		1e-06
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		1e-04
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		3e-06
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		4e-06
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		6e-06
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		7e-06
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		8e-04
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		7e-06
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		7e-05
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		9e-06
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		9e-06
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		9e-06
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		1e-05
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		2e-05
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		2e-05
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		2e-05
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		5e-04
3d22_A	139	Crystal Structure Of A Poplar Thioredoxin H Mutant,		3e-05
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		3e-05
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		3e-05
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		5e-05
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		7e-05
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		8e-05
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		8e-05
1thx_A	115	Thioredoxin-2 Length = 115		8e-05
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		8e-05
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		1e-04
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		3e-04
3tco_A	109	Crystallographic And Spectroscopic Characterization		1e-04
1ep8_A	112	Crystal Structure Of A Mutated Thioredoxin, D30a, F		2e-04
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-04
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		3e-04
1ep7_A	112	Crystal Structure Of Wt Thioredoxin H From Chlamydo		3e-04
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		3e-04
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		3e-04
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		5e-04
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		6e-04

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 137/239 (57%), Gaps = 23/239 (9%)
Query: 82  GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSIAKIDC 139
           G++ L + +F+ +V+  +   ++FYAPWCGHC+  AP ++++A+  K ++  + +AKID 
Sbjct: 16  GVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKAD-SPDA 198
           T    +   FD+  YPT+  ++ G+ +D ++GSRT E +V  V ++  P     D +P  
Sbjct: 76  TSASVLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQP-----DWTPPP 129
Query: 199 ENASXXXXXXXXXXSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
           E              LT ENF++V+     + ++F+APWCGHCK+LAP +E+   +L   
Sbjct: 130 E----------VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 179
Query: 258 KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
              I +AKVD T E   DL  +  V G+P++ +++ G R  +YNG R+   +  ++++ 
Sbjct: 180 SPPIPLAKVDATAET--DLAKRFDVSGYPTLKIFRKG-RPYDYNGPREKYGIVDYMIEQ 235

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 5/112 (4%)
Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           +LT  NF+D I  G  FIKF+APWCGHCK LAPTWEEL  K      G+ IA+VDCT E 
Sbjct: 11  ALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE- 69
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
            +++C++  V G+P++ +++ G + +E++G RDL+ L++F+L    ++ DEL
Sbjct: 70  -RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 117

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 5/112 (4%)
Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           +LT  NF+D I  G  FIKF+APWCGHCK LAPTWEEL  K      G+ IA+VDCT E 
Sbjct: 4   ALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE- 62
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
            +++C++  V G+P++ +++ G + +E++G RDL+ L++F+L    ++ DEL
Sbjct: 63  -RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS---QAKDEL 110

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           +LT  NF+D I  G  FIKF+APWCGHCK LAPTWEEL  K      G+ IA+VDCT E 
Sbjct: 9   ALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE- 67
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314
            +++C++  V G+P++ +++ G + +E++G RDL+ L++F+L
Sbjct: 68  -RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVL 108

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 83  LVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           ++ELT+++FE  +S     G   V+F+APWCGHC+ LAP ++  A+  K    V +AK+D
Sbjct: 3   VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKVD 60
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
           CT + + C  + +  YPTL     G++   + G RT + +V+++ K  GP
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 11/108 (10%)
Query: 214 LTSENF----NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDC 268
           LT +NF    +D   +G + ++FFAPWCGHCKRLAP +E   T+L     GIV +AKVDC
Sbjct: 6   LTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRL----KGIVPLAKVDC 61
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           T   + + CN+ GV G+P++ ++++G     Y+G R  + +   + K 
Sbjct: 62  TA--NTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ 107

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 59/315 (18%)
Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           +  + + + DC+    +C+D  +   P+L  FK     E     G + L  +  F  E +
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKILYDILAFAKESV 438
Query: 67  SE--TPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELAS 124
           +   T   P + P  ++          E ++      V F+APW    ++L P  ++ ++
Sbjct: 439 NSHVTTLGPQNFPASDK----------EPWL------VDFFAPWSPPSRALLPELRKAST 482
Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
               +  + +  +DCT H  +C  ++I++YPT + + +   + +++G  + E ++ ++  
Sbjct: 483 LLYGQ--LKVGTLDCTIHEGLCNMYNIQAYPTTV-VFNQSSIHEYEGHHSAEQILEFIED 539
Query: 185 MKGPLNKKADSPDAENASXXXXXXXXXXSLTSENFNDVIKSG----TVFIKFFAPWCGHC 240
           ++ P                        SLT   FN+++K         + F++PW    
Sbjct: 540 LRNP---------------------SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPS 578
Query: 241 KRLAPTWEELGTKLLDNKHGIV-IAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA- 298
           + L P W+ +   L     G++ +  VDC Q  S   C QE V  +P I  Y      A 
Sbjct: 579 QVLMPEWKRMARTLT----GLINVGSVDCGQYHS--FCTQENVQRYPEIRFYPQKSSKAY 632
Query: 299 ---EYNG-SRDLEEL 309
               YNG +RD   L
Sbjct: 633 QYHSYNGWNRDAYSL 647

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
           +L    F+  + SG + F+ F++P   H   LAPTW E   ++     G++ I  V+C  
Sbjct: 120 TLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEV----DGLLRIGAVNCGD 175
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           +  + LC  +GV+ +PS++++++G+   +YNG R  E L  F ++H   +  EL
Sbjct: 176 D--RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL 227

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 83  LVELTEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           ++ELT+++FE  +S     G   V+F+APWCGH + LAP ++  A+  K    V +AK+D
Sbjct: 3   VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVD 60
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
           CT + + C  + +  YPTL     G++   + G RT + +V+++ K  GP
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 11/96 (11%)
Query: 214 LTSENF----NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDC 268
           LT +NF    +D   +G + ++FFAPWCGH KRLAP +E   T+L     GIV +AKVDC
Sbjct: 6   LTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRL----KGIVPLAKVDC 61
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
           T   + + CN+ GV G+P++ ++++G     Y+G R
Sbjct: 62  TA--NTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPR 95

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 7/106 (6%)
Query: 214 LTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           L +++FN+ I+S   V  +FFAPWCGHCK +AP + +    L++    I +A++DCT+  
Sbjct: 19  LATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTE-- 74
Query: 273 SKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
           ++DLC +  + GFPS+ ++KN     + +Y G R  E + QF++K 
Sbjct: 75  NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 213 SLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           SLT +NF+DV+ +   + ++F+APWCGHCK+LAP +E+   +L      I +AKVD T++
Sbjct: 11  SLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
              DL  +  V G+P++ +++ G R  +YNG R+   +  ++++ 
Sbjct: 71  T--DLAKRFDVSGYPTLKIFRKG-RPFDYNGPREKYGIVDYMIEQ 112

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 11/109 (10%)
Query: 214 LTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDN--KHGIVIAKVDCT 269
           + ++N+N+++   T  V I+F+APWCGHCK LAP +EELG     +  K  +VIAKVD T
Sbjct: 12  VVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT 71
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVR--TAEYNGSRDLEELYQFILKH 316
              + D+ ++  + GFP+I +Y  G +     Y+GSR +E+L +FI ++
Sbjct: 72  ---ANDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 214 LTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           L   NF++ V    TV ++F+APWCGHCK+ AP +E++ + L DN   I +AK+D T   
Sbjct: 22  LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-- 79
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
           +  L ++  V G+P+I + K G +  +Y+GSR  EE+
Sbjct: 80  ASMLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEI 115

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 8/114 (7%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
           +L    F+  + SG + F+ F++P C HC  LAPTW E   ++     G++ I  V+C  
Sbjct: 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV----DGLLRIGAVNCGD 156
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           +  + LC  +GV+ +PS++++++G+   +YNG R  E L  F ++H   +  EL
Sbjct: 157 D--RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL 208

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 77  PIVNEGLVELT-EESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVS 133
           P  N+G V++   E+F++ V+  N    ++FYAPWCGHC++L P ++EL      + ++ 
Sbjct: 22  PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIV 81
Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSK 184
           IAK+D T +  +   ++++ +PT+ +  + KKL+  K++G R L   ++Y+ +
Sbjct: 82  IAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 133

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           + +ENF++++  ++  V I+F+APWCGHCK L P ++ELG KL  + + IVIAK+D T  
Sbjct: 32  VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN-IVIAKMDAT-- 88
Query: 272 LSKDLCNQEGVDGFPSIYV--YKNGVRTAEYNGSRDLEELYQFILKH 316
            + D+ +   V GFP+IY       +   +Y G R+L +   ++ + 
Sbjct: 89  -ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 134

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 75  DKPIVNEGLVELTEESFEKYVSLGNHF-VKFYAPWCGHCQSLAPVWQELASHFKTE-EDV 132
           D P   + ++ L + +F + ++   +  V+FYAPWCGHC++LAP + + A   K E  ++
Sbjct: 1   DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 133 SIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
            +AK+D T+   + Q + ++ YPT+ +  +G      ++   R  + +VN++ K  GP
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 214 LTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           L   NF + + +   + ++F+APWCGHCK LAP + +   KL      I +AKVD T+E 
Sbjct: 12  LRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE- 70
Query: 273 SKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
             DL  Q GV G+P+I  ++NG      EY   R+ +++  ++ K 
Sbjct: 71  -SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN-QEGVDGFP 286
           V I+F+APWCGHCK+L P +  LG K    K  +VIAK+D T   + D+ N Q  V+GFP
Sbjct: 28  VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-LVIAKMDAT---ANDITNDQYKVEGFP 83
Query: 287 SIYVYKNGVRTAEY---NGSRDLEELYQFILKH 316
           +IY   +G +        G+RDLE L +FI +H
Sbjct: 84  TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEH 116

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFK--TEEDVSIAKID 138
           ++ELT++SF+K V  S     V+FYAPWCGHC++L P W   AS  K  T+  V +A +D
Sbjct: 9   VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVD 68
Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180
            T ++ +   + I+ +PT+   + G+    + G RT   +V+
Sbjct: 69  ATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 110

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 214 LTSENFN-DVIKSGTVF-IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
           LT ++F+ +V+ S  V+ ++F+APWCGHCK L P W    +++ +   G V +A VD T 
Sbjct: 12  LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT- 70
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL 314
            +++ L ++ G+ GFP+I +++ G    +Y+G R   ++    L
Sbjct: 71  -VNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRAL 113

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 99  NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
           N FV+FYAPWCGHC+ LAP+W +L   +K  E++ IAK+D T +    ++  + S+PTL 
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLK 326
Query: 159 WIESG--KKLDKFQGSRTLETLVNYV 182
           +  +   + +  + G RTL+    ++
Sbjct: 327 FFPASADRTVIDYNGERTLDGFKKFL 352

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 9/104 (8%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           L  +NF DV   +   VF++F+APWCGHCK+LAP W++LG    D+++ IVIAK+D T  
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHEN-IVIAKMDSTA- 311
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGV-RTA-EYNGSRDLEELYQFI 313
              +      V  FP++  +     RT  +YNG R L+   +F+
Sbjct: 312 ---NEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 352

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ELT  +F + V  S G   V+FYAPWCGHCQ L P W++ A+  K  + V +  ++  
Sbjct: 19  VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAVNAD 76
Query: 141 QHRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRTLETLVN 180
           +H+S+   + ++ +PT+    + K K + +QG RT E +V+
Sbjct: 77  KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           LT  NFN +VI+S G   ++F+APWCGHC+RL P W++  T L D     V+       +
Sbjct: 22  LTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD-----VVKVGAVNAD 76
Query: 272 LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFIL 314
             + L  Q GV GFP+I ++  N  +  +Y G R  E +    L
Sbjct: 77  KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAAL 120

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 99  NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
           N FV+FYAPWCGHC+ LAP+W +L   +K  E++ IAK+D T +    ++  + S+PTL 
Sbjct: 27  NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLK 84
Query: 159 WIESG--KKLDKFQGSRTLETLVNYV 182
           +  +   + +  + G RTL+    ++
Sbjct: 85  FFPASADRTVIDYNGERTLDGFKKFL 110

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 9/104 (8%)
Query: 214 LTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           L  +NF DV   +   VF++F+APWCGHCK+LAP W++LG    D+++ IVIAK+D T  
Sbjct: 12  LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHEN-IVIAKMDSTAN 70
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGV-RTA-EYNGSRDLEELYQFI 313
             + +     V  FP++  +     RT  +YNG R L+   +F+
Sbjct: 71  EVEAV----KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 80  NEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
           +  +V++T+  F+  V  G   V F+A WCG C+ +APV +ELA+ ++ + D  I K+D 
Sbjct: 2   SHAIVKVTDADFDSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKAD--ILKLDV 59
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            ++ S    +++ S PTL+  + G+ +DK  G +  E L   + K
Sbjct: 60  DENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +T  +F+  ++SG   + F+A WCG CK +AP  EEL     D +    I K+D  +  S
Sbjct: 8   VTDADFDSKVESGVQLVDFWATWCGSCKMIAPVLEELAA---DYEGKADILKLDVDENPS 64
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                +  V   P++ V+K+G    +  G +  E L + + KH
Sbjct: 65  T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V++T+  F+  V  G   V F+A WCG C+ +APV +ELA+ ++ + D  I K+D  +
Sbjct: 5   AIVKVTDADFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKAD--ILKLDVDE 62
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + S    +++ S PTL+  + G+ +DK  G +  E L   + K
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 105

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +T  +F+  ++SG   + F+A WCG CK +AP  EEL     D +    I K+D  +  S
Sbjct: 9   VTDADFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAA---DYEGKADILKLDVDENPS 65
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                +  V   P++ V+K+G    +  G +  E L + + KH
Sbjct: 66  T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 106

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 101 FVKFYAPWCGHCQSLAPVWQE----LASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT 156
            V FYA WC   Q L P+++E    +   F  E  V  A++DC QH  I Q + I  YPT
Sbjct: 26  LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85
Query: 157 LLWIESGKKLDK-FQGSRTLETLVNYVSKMK 186
           L    +G    + ++G R+++ L +Y+ + K
Sbjct: 86  LKLFRNGXXXKREYRGQRSVKALADYIRQQK 116

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKL---LDNKHGIVIAKVDC 268
           SL +EN ++++ +  V  + F+A WC   + L P +EE    +     N++ +V A+VDC
Sbjct: 9   SLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDC 68
Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFILKHKVESHDEL 324
            Q    D+  +  +  +P++ +++NG     EY G R ++ L  +I + K +   E+
Sbjct: 69  DQH--SDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEI 123

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V++T+  F+  V  G   V F+A WCG C+ +APV +ELA+ ++ + D  I K+D  +
Sbjct: 5   AIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKAD--ILKLDVDE 62
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + S    +++ S PTL+  + G+ +DK  G +  E L   + K
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 105

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +T  +F+  ++SG   + F+A WCG CK +AP  EEL     D +    I K+D  +  S
Sbjct: 9   VTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAA---DYEGKADILKLDVDENPS 65
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                +  V   P++ V+K+G    +  G +  E L + + KH
Sbjct: 66  T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 106

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V++T+  F+  V  G   V F+A WCG  + +APV +ELA+ ++ + D  I K+D  +
Sbjct: 5   AIVKVTDADFDSKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKAD--ILKLDVDE 62
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + S    +++ S PTL+  + G+ +DK  G +  E L   + K
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 105

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +T  +F+  ++SG   + F+A WCG  K +AP  EEL     D +    I K+D  +  S
Sbjct: 9   VTDADFDSKVESGVQLVDFWATWCGTSKMIAPVLEELAA---DYEGKADILKLDVDENPS 65
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                +  V   P++ V+K+G    +  G +  E L + + KH
Sbjct: 66  T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 106

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 20/129 (15%)
Query: 83  LVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           + ELT +SF+K +   N+   V+FYAPWCGHC+ L+  +++ A        V+    D  
Sbjct: 19  ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLN 78
Query: 141 QHRSICQSFDIKSYPTLLW-----IESGKKLDK------------FQGSRTLETLVNY-V 182
           +++++C  +D+  +PTL+      I+  K +D             + G+RTL  +V++ +
Sbjct: 79  KNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSL 138
Query: 183 SKMKGPLNK 191
           S+++  + K
Sbjct: 139 SRIRSYVKK 147

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 214 LTSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
           LT ++F+  I +   T  ++F+APWCGHCK+L+ T+ +   +L     G+V +A V+C  
Sbjct: 22  LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL----DGVVQVAAVNCDL 77
Query: 271 ELSKDLCNQEGVDGFPSIYVYK 292
             +K LC +  V+GFP++ V++
Sbjct: 78  NKNKALCAKYDVNGFPTLMVFR 99

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 86  LTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
           +T+E++ + +  G+  ++FYAPWC  CQ+L P W+  A  +  + +V+IAK+D T+   +
Sbjct: 12  ITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFA-EWGEDLEVNIAKVDVTEQPGL 69
Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
              F I + PT+   + G +  ++QG RT +  +N++S
Sbjct: 70  SGRFIINALPTIYHCKDG-EFRRYQGPRTKKDFINFIS 106

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWE---ELGTKLLDNKHGIVIAKVDCTQ 270
           +T EN+ ++++ G   I+F+APWC  C+ L P WE   E G  L  N     IAKVD T+
Sbjct: 12  ITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVN-----IAKVDVTE 65
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
           +    L  +  ++  P+IY  K+G     Y G R  ++   FI
Sbjct: 66  Q--PGLSGRFIINALPTIYHCKDG-EFRRYQGPRTKKDFINFI 105

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +++T+ SF   V   N    V F+A WCG C+ +APV +E+A+   T  D+++AK+D   
Sbjct: 10  IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDT 67
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
           +    ++F + S PTL+  + G+ + +  G++    L+  +S +   LN
Sbjct: 68  NPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 221 DVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
           DV+ S   V + F+A WCG CK +AP  EE+ T   +    + +AK+D   + + +    
Sbjct: 20  DVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT---ERATDLTVAKLDV--DTNPETARN 74
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ 311
             V   P++ ++K+G       G++    L +
Sbjct: 75  FQVVSIPTLILFKDGQPVKRIVGAKGKAALLR 106

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 83  LVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++E+T+E+FE+ V   +    V F+APWCG C+ +AP+ +ELA  ++ +  V    +D  
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD-- 60
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           ++ +    + I+S PTLL  ++G+ +D+  G++  E L   + K
Sbjct: 61  ENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 214 LTSENF-NDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +T ENF  +V+KS   V + F+APWCG C+ +AP  EEL  +      G V        E
Sbjct: 6   VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY----EGKVKVVKVNVDE 61
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            + +   Q G+   P++ ++KNG       G++  E L + I KH
Sbjct: 62  -NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH 105

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +++T+ SF   V   N    V F+A WCG C+ +APV +E+A+   T  D+++AK+D   
Sbjct: 15  IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDT 72
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
           +    ++F + S PTL+  + G+ + +  G++    L+  +S +   LN
Sbjct: 73  NPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 221 DVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
           DV+ S   V + F+A WCG CK +AP  EE+ T   +    + +AK+D   + + +    
Sbjct: 25  DVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT---ERATDLTVAKLDV--DTNPETARN 79
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ 311
             V   P++ ++K+G       G++    L +
Sbjct: 80  FQVVSIPTLILFKDGQPVKRIVGAKGKAALLR 111

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V+ T++SF    S G     F+APWCG C+ +APV +EL       + + I KID  +
Sbjct: 2   AIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMG--DKLKIVKIDVDE 59
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           ++     + + S PTLL ++ G+ ++   G +  E L   V+K
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
           T ++F+     G V   F+APWCG CK +AP  EEL  ++ D K  IV   VD  QE + 
Sbjct: 7   TDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGD-KLKIVKIDVDENQETA- 64
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
               + GV   P++ V K+G       G +  E L + + KH
Sbjct: 65  ---GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V++T+  F+  V  G   V F+A  CG C+ +APV +ELA+ ++ + D  I K+D  +
Sbjct: 4   AIVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKAD--ILKLDVDE 61
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + S    +++ S PTL+  + G+ +DK  G +  E L   + K
Sbjct: 62  NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 214 LTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +T  +F+  ++SG   + F+A  CG CK +AP  EEL     D +    I K+D  +  S
Sbjct: 8   VTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAA---DYEGKADILKLDVDENPS 64
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                +  V   P++ V+K+G    +  G +  E L + + KH
Sbjct: 65  T--AAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            V F+APWCG C+ +AP +Q  A+    +  V +AKID   H ++     I+  P  +  
Sbjct: 68  LVDFWAPWCGPCRQMAPQFQAAAATLAGQ--VRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 161 ESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
             G++L +  G+R    LV +V   +G L  +A
Sbjct: 126 HKGRELARAAGARPASELVGFV---RGKLGARA 155

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           + + F+APWCG C+++AP ++     L      + +AK+D   +    +  +  + G P+
Sbjct: 67  LLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKID--TQAHPAVAGRHRIQGIPA 121
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFI 313
             ++  G   A   G+R   EL  F+
Sbjct: 122 FILFHKGRELARAAGARPASELVGFV 147

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
           ++FFA WCGH    APTW+EL   + D +  + +A +DC +E +  +C +  + GFP++ 
Sbjct: 35  VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 290 VY----KNGVRTAEYNGSRDLEELYQFILKHKVESHDE 323
            +    KNG          +++ L +  L   +ESH +
Sbjct: 95  FFQAFTKNGSGATLPGAGANVQTL-RMRLIDALESHRD 131

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +++T+ SF   V   N    V F+A WCG  + +APV +E+A+   T  D+++AK+D   
Sbjct: 12  IKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERAT--DLTVAKLDVDT 69
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
           +    ++F + S PTL+  + G+ + +  G++    L+  +S +   LN
Sbjct: 70  NPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 84  VELTEESF-EKYVSLGNHFV-KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           ++LT ++F EK +    H+V  FYAPWCG CQ+ AP ++ LA   K +  V   K+DC  
Sbjct: 6   IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK--VRAGKVDCQA 63
Query: 142 HRSICQSFDIKSYPTL 157
           +   CQ   IK+YP++
Sbjct: 64  YPQTCQKAGIKAYPSV 79

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 214 LTSENFNDVIKSGTV--FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           LT + FN+ +  G     + F+APWCG C+  AP +E L   +   K  +   KVDC  +
Sbjct: 8   LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI---KGKVRAGKVDC--Q 62
Query: 272 LSKDLCNQEGVDGFPSIYVYK 292
                C + G+  +PS+ +Y+
Sbjct: 63  AYPQTCQKAGIKAYPSVKLYQ 83

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCGHC+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCGHCK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY 289
           ++FFA WCGHC   APTW  L   +   +  + +A +DC +E +  +C    + GFP++ 
Sbjct: 35  VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 290 VY----KNGVRTAEYNGSRDLEELYQFILKHKVESHD 322
            +     NG          D++ L + ++      HD
Sbjct: 95  FFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHD 131

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V+ T++SF    S G     F+APWCG  + +APV +EL       + + I KID  +
Sbjct: 2   AIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDE 59
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           ++     + + S PTLL ++ G+ ++   G +  E L   V+K
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
           T ++F+     G V   F+APWCG  K +AP  EEL  ++ D K  IV   VD  QE + 
Sbjct: 7   TDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETA- 64
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
               + GV   P++ V K+G       G +  E L + + K
Sbjct: 65  ---GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 82  GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
            +V+ T++SF    S G     F+APWCG  + +APV +EL       + + I KID  +
Sbjct: 2   AIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDE 59
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           ++     + + S PTLL ++ G+ ++   G +  E L   V+K
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK 274
           T ++F+     G V   F+APWCG  K +AP  EEL  ++ D K  IV   VD  QE + 
Sbjct: 7   TDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETA- 64
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
               + GV   P++ V K+G       G +  E L + + KH
Sbjct: 65  ---GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 88  EESFEKYVS-LGNHFV--KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           +E F K ++  GN  V   FYA WCG C+ +AP  +EL+   ++  DV   K+D  +   
Sbjct: 8   QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELS---QSMSDVVFLKVDVDECED 64
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
           I Q   I   PT L++++G+KLD   G+   + L+  V K K
Sbjct: 65  IAQDNQIACMPTFLFMKNGQKLDSLSGAN-YDKLLELVEKNK 105

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V I F+A WCG CK +AP  EEL   + D    +V  KVD  +   +D+     +   P+
Sbjct: 23  VVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDE--CEDIAQDNQIACMPT 76
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
               KNG +    +G+ + ++L + + K+K
Sbjct: 77  FLFMKNGQKLDSLSGA-NYDKLLELVEKNK 105

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            V F+APWCG C+ +APV  ELA  +  +  +++ K++  +   I   ++I+S PT+L+ 
Sbjct: 22  MVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTDEAPGIATQYNIRSIPTVLFF 79
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
           ++G++ +   G+    TL + + K
Sbjct: 80  KNGERKESIIGAVPKSTLTDSIEK 103

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V + F+APWCG CK +AP  +EL       ++   IA      + +  +  Q  +   P+
Sbjct: 21  VMVDFWAPWCGPCKLIAPVIDELA-----KEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 288 IYVYKNGVRTAEYNGS 303
           +  +KNG R     G+
Sbjct: 76  VLFFKNGERKESIIGA 91

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            V F+APWCG C+ +APV  ELA  +  +  +++ K++  +   I   ++I+S PT+L+ 
Sbjct: 21  MVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTDEAPGIATQYNIRSIPTVLFF 78
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
           ++G++ +   G+    TL + + K
Sbjct: 79  KNGERKESIIGAVPKSTLTDSIEK 102

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V + F+APWCG CK +AP  +EL       ++   IA      + +  +  Q  +   P+
Sbjct: 20  VMVDFWAPWCGPCKLIAPVIDELA-----KEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 74
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  +KNG R     G+     L   I K+
Sbjct: 75  VLFFKNGERKESIIGAVPKSTLTDSIEKY 103

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+S PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRSIPTLLLFKNGE 85

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+   P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT+ESF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT E+F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SFE  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F  DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LTE+SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           T++ F+ +++ G        + F A WCG C+ +APV+ E A  F         K+D  +
Sbjct: 13  TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDE 69
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
            + + +++++++ PT L+I+ G+K+D   G R  +     V+ M
Sbjct: 70  LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALM 113

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V I F A WCG C+ +AP + E   K      G +  KVD   EL KD+     V+  P+
Sbjct: 31  VIIDFTASWCGPCRVIAPVFAEYAKKF----PGAIFLKVD-VDEL-KDVAEAYNVEAMPT 84
Query: 288 IYVYKNGVRTAEYNGSR 304
               K+G +     G R
Sbjct: 85  FLFIKDGEKVDSVVGGR 101

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+ L P  +++ +  K    V +AK+D   H  +   +++ + PT+L ++
Sbjct: 36  VDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKG 187
           +G  +DKF G +  + L  ++ K+ G
Sbjct: 94  NGDVVDKFVGIKDEDQLEAFLKKLIG 119

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 218 NFND-VIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSK 274
           +F D V+ S T V + F A WCG CK L P  E    K++  +HG +V+AKVD       
Sbjct: 22  DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLE----KMVAKQHGKVVMAKVDIDDH--T 75
Query: 275 DLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
           DL  +  V   P++   KNG    ++ G +D ++L  F+ K
Sbjct: 76  DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 116

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           +E ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK+
Sbjct: 1   SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKL 58
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGK 164
           +  Q+      + I+  PTLL  ++G+
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            V F+APWCG C+ +APV  E+A  +K  + +   K++  +  ++   + I+S PT++  
Sbjct: 23  LVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMVF 80
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
           + GKK +   G+    T+V  V K
Sbjct: 81  KGGKKCETIIGAVPKATIVQTVEK 104

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 213 SLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           ++  + F +V+   S  V + F+APWCG C+ +AP  +E+  +  D      +  V    
Sbjct: 5   AVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-----LKCVKLNT 59
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           + S ++ ++ G+   P+I V+K G +     G+     + Q + K+
Sbjct: 60  DESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+ +E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  EE+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 79  VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
           +++ ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK
Sbjct: 10  MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAK 67
Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGK 164
           ++  Q+      + I+  PTLL  ++G+
Sbjct: 68  LNIDQNPGTAPKYGIRGIPTLLLFKNGE 95

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 17  LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 72
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 73  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 113

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V + FFA WCG CK ++P   EL T+  DN   +V+ KVD  +   +D+  +  +   P+
Sbjct: 28  VVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE--CEDIAMEYNISSMPT 82
Query: 288 IYVYKNGVRTAEYNGS 303
               KNGV+  E+ G+
Sbjct: 83  FVFLKNGVKVEEFAGA 98

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG C+ +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESG 163
           Q+      + I+  PTLL  ++G
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFL 103

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D +  + +AK++  Q 
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---DYQGKLTVAKLNIDQ- 62
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
            +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  -NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+++AP  + LA   K   +V  AK+D  Q+      + + + PT ++I+
Sbjct: 24  VDFFAQWCGPCRNIAPKVEALA---KEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80
Query: 162 SGKKLDKFQGS 172
            GK++D+F G+
Sbjct: 81  DGKEVDRFSGA 91

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
           K   + + FFA WCG C+ +AP  E L  ++ +    +  AKVD  Q  +++   +  V 
Sbjct: 18  KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE----VEFAKVDVDQ--NEEAAAKYSVT 71
Query: 284 GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
             P+    K+G     ++G+ +  +L + I +HK
Sbjct: 72  AMPTFVFIKDGKEVDRFSGANE-TKLRETITRHK 104

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 5   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 62
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 63  QNPGTAPKYGIRGTPTLLLFKNGE 86

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 63
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 64  --NPGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFL 104

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+  +    +  + +AK++  Q 
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY---QGKLTVAKLNIDQ- 62
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
            +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  -NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFL 103

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L  F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFL 103

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L  F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFL 103

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  ++A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +AP  +++     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           + F A WCG C+ +APV+ E A  F         K+D  + + + + +++++ PT L+I+
Sbjct: 41  IDFTASWCGPCRFIAPVFAEYAKKF---PGAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADS 195
            G + DK  G+R  + L N + K  G     A +
Sbjct: 98  DGAEADKVVGARK-DDLQNTIVKHVGATAASASA 130

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286
            V I F A WCG C+ +AP + E   K      G V  KVD   EL K++  +  V+  P
Sbjct: 38  VVIIDFTASWCGPCRFIAPVFAEYAKKF----PGAVFLKVD-VDEL-KEVAEKYNVEAMP 91
Query: 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +    K+G    +  G+R  ++L   I+KH
Sbjct: 92  TFLFIKDGAEADKVVGARK-DDLQNTIVKH 120

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           +E+T+++F++  +LG H    V F+A WC  C+ +AP+ +E+A  +  E  + +AK+D  
Sbjct: 5   IEVTDQNFDE--TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVD 60
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
           ++      + + S PT++  + G+ ++   G++      NY +K++  L   A
Sbjct: 61  ENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKR---NYQAKIEKHLPATA 110

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 214 LTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           +T +NF++ + +   V + F+A WC  C+ +AP  EE+     + +  +++AK+D  +  
Sbjct: 7   VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAK---EYEGKLLVAKLDVDE-- 61
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +     +  V   P++ ++K+G       G++        I KH
Sbjct: 62  NPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 105

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           +E+T+++F++  +LG H    V F+A WC  C+ +AP+ +E+A  +  E  + +AK+D  
Sbjct: 4   IEVTDQNFDE--TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVD 59
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
           ++      + + S PT++  + G+ ++   G++      NY +K++  L   A
Sbjct: 60  ENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKR---NYQAKIEKHLPATA 109

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 214 LTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           +T +NF++ + +   V + F+A WC  C+ +AP  EE+     + +  +++AK+D  +  
Sbjct: 6   VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAK---EYEGKLLVAKLDVDE-- 60
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +     +  V   P++ ++K+G       G++        I KH
Sbjct: 61  NPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V + FFA WCG CK ++P   EL T+  DN   +V+ KVD  +   +D+  +  +   P+
Sbjct: 23  VVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE--CEDIAMEYNISSMPT 77
Query: 288 IYVYKNGVRTAEYNGS 303
               KNGV+  E+ G+
Sbjct: 78  FVFLKNGVKVEEFAGA 93

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ +T++SF+  V  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           +T ++F+ DV+K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 93  KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152
           KY       V FYA WCG C+ +AP+  ELA  +  +  + I K+D  + + +  +F I+
Sbjct: 34  KYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ--IVIYKVDTEKEQELAGAFGIR 91
Query: 153 SYPTLLWIESGKKLDKFQGS 172
           S P++L+I    K +  QG+
Sbjct: 92  SIPSILFIPMEGKPEMAQGA 111

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
             + F+A WCG CK +AP  +EL  K  D +  IVI KVD  +E  ++L    G+   PS
Sbjct: 41  AIVDFYADWCGPCKMVAPILDEL-AKEYDGQ--IVIYKVDTEKE--QELAGAFGIRSIPS 95
Query: 288 I 288
           I
Sbjct: 96  I 96

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            V F+APWCG  + +APV  ELA  +  +  +++ K++  +   I   ++I+S PT+L+ 
Sbjct: 22  MVDFWAPWCGPSKLIAPVIDELAKEYSGK--IAVYKLNTDEAPGIATQYNIRSIPTVLFF 79
Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
           ++G++ +   G+    TL + + K
Sbjct: 80  KNGERKESIIGAVPKSTLTDSIEK 103

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V + F+APWCG  K +AP  +EL       ++   IA      + +  +  Q  +   P+
Sbjct: 21  VMVDFWAPWCGPSKLIAPVIDELA-----KEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 288 IYVYKNGVRTAEYNGS 303
           +  +KNG R     G+
Sbjct: 76  VLFFKNGERKESIIGA 91

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           +E  + +++ SF++ V  + G   V F+A WCG C+ + P   E+   F  +  V++AK+
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK--VTVAKV 58
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
           +   +     ++ ++S PTL+ +  GK +DK  G+     L  +V
Sbjct: 59  NIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWV 103

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 83  LVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           ++  T E+ +K +       + F+APWCG C+S AP++ E A+    +  V   K++   
Sbjct: 40  VINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGK--VRFVKVNTEA 97
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
             ++   F I+S PT+    +GK +D   G+
Sbjct: 98  EPALSTRFRIRSIPTIXLYRNGKXIDXLNGA 128

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 83  LVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +VE  E+ F + V+      V F+APWCG C+ ++P+ +ELA        + + K++  +
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR--LKVVKVNVDE 92
Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGS---RTLE 176
           H  +   + ++S PTL+    G  +  + G+   R LE
Sbjct: 93  HPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLE 130

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
            +V  +    + FFAPWCG C+ ++P  EEL     D+   + + KV+  +     L  +
Sbjct: 45  QEVAGAPLTLVDFFAPWCGPCRLVSPILEELAR---DHAGRLKVVKVNVDEH--PGLAAR 99
Query: 280 EGVDGFPSIYVYKNGVRTAEYNGS---RDLEELYQFILKHK 317
            GV   P++ +++ G   A + G+   R LEE  +  L+ +
Sbjct: 100 YGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEGR 140

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 86  LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           LT+ +F++ +   G   V F+A WCG C+ +APV +E A      + V++AK++  ++  
Sbjct: 5   LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPE 62
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
               F I S PTL+  + G+ + +  G +  E L
Sbjct: 63  TTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +LT  NF   I+  G V + F+A WCG C+ +AP  EE      D    + +AK++  + 
Sbjct: 4   TLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
            + +  +Q G+   P++ ++K G    +  G +  E+L
Sbjct: 60  -NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG  + +AP+  E+A  ++ +  +++AK++  
Sbjct: 24  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK--LTVAKLNID 81
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 82  QNPGTAPKYGIRGIPTLLLFKNGE 105

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG  K +AP  +E+     D   G + +AK++  Q
Sbjct: 27  LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIA----DEYQGKLTVAKLNIDQ 82
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 83  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 123

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 79  VNEGLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           V E +  L  ++F+++++      V F+A WC  C  LAPV +ELA+ +     V+  K+
Sbjct: 4   VKEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKL 60
Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
           +  + + I   + I S PT+++ ++G+ +D+  G+
Sbjct: 61  NTEESQDIAMRYGIMSLPTIMFFKNGELVDQILGA 95

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 214 LTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           L S+NF++ I K+  V + F+A WC  C  LAP  EEL         G          E 
Sbjct: 11  LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFG------KLNTEE 64
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
           S+D+  + G+   P+I  +KNG    +  G+   EE+
Sbjct: 65  SQDIAMRYGIMSLPTIMFFKNGELVDQILGAVPREEI 101

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG  + +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG  K +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WC  C+ +AP++ ELA  F    +V+  K+D  + +++ + +++++ PT ++++
Sbjct: 31  VDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAEEWNVEAMPTFIFLK 87
Query: 162 SGKKLDKFQGSRT--LETLV 179
            GK +DK  G+    L TLV
Sbjct: 88  DGKLVDKTVGADKDGLPTLV 107

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 86  LTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           LT+ +F++ +   G   V F+A WCG C+ +APV +E A      + V++AK++  ++  
Sbjct: 5   LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPE 62
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
               F I S PTL+  + G+ + +  G +  E L
Sbjct: 63  TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +LT  NF   I+  G V + F+A WCG C+ +AP  EE      D    + +AK++  + 
Sbjct: 4   TLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
            + +  +Q G+   P++ ++K G    +  G +  E+L
Sbjct: 60  -NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTEEDVSIAKIDC 139
           ++ LT++SF+  V  + G   V F+A WCG  C+ +AP+  E+A  ++ +  +++AK++ 
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGK--LTVAKLNI 61
Query: 140 TQHRSICQSFDIKSYPTLLWIESGK 164
            Q+      + I+  PTLL  ++G+
Sbjct: 62  DQNPGTAPKYGIRGIPTLLLFKNGE 86

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDNKHG-IVIAKVDCT 269
           LT ++F+ DV+K+ G + + F+A WCG  CK +AP  +E+     D   G + +AK++  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIA----DEYQGKLTVAKLNID 62
Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
           Q  +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  Q--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 219 FNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC 277
           F+ +I ++  V + FFA WCG CKR+AP +EE           +V  KVD   E+S ++ 
Sbjct: 19  FDSIISQNELVIVDFFAEWCGPCKRIAPFYEECS----KTYTKMVFIKVD-VDEVS-EVT 72
Query: 278 NQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +E +   P+  VYKNG       G+ D   L Q I K+
Sbjct: 73  EKENITSMPTFKVYKNGSSVDTLLGAND-SALKQLIEKY 110

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WCG C+ +A +  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WCG CK +A   +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ +AP + +LA   K   +V   K+D  + +S+   + I++ PT ++++
Sbjct: 43  VDFTASWCGPCRFIAPFFADLA---KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 162 SGKKLDKFQGSR 173
            GK LDK  G++
Sbjct: 100 EGKILDKVVGAK 111

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 86  LTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           LT+ +F++ +  G+    V F+A WCG C+ +APV +E A      + V++AK++  ++ 
Sbjct: 5   LTDANFQQAIQ-GDKPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENP 61
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
                F I S PTL+  + G+ + +  G +  E L
Sbjct: 62  ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +LT  NF   I+    V + F+A WCG C+ +AP  EE      D    + +AK++  + 
Sbjct: 4   TLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
            + +  +Q G+   P++ ++K G    +  G +  E+L
Sbjct: 60  -NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQL 96

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+++AP+++EL+  +    D    K+D  +     + ++I + PT + I+
Sbjct: 38  VDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 162 SGKKLDKFQGS 172
           +G+K+    G+
Sbjct: 94  NGEKVGDVVGA 104

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
           K+  V + FFA WCG CK +AP ++EL       K+  +  KVD  +   ++   +  + 
Sbjct: 32  KNKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKVDVDK--LEETARKYNIS 84
Query: 284 GFPSIYVYKNGVRTAEYNGS 303
             P+    KNG +  +  G+
Sbjct: 85  AMPTFIAIKNGEKVGDVVGA 104

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WC  C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WC  CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 93  KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK 152
           KY+      V FYA WCG C+ +AP+ +EL+  +  +  + I K++  +   + + F I+
Sbjct: 47  KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK--IYIYKVNVDKEPELARDFGIQ 104
Query: 153 SYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
           S PT+ ++    +     G+ + E L  Y+ K+
Sbjct: 105 SIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKV 137

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
             + F+A WCG CK +AP  EEL +K    K  I    VD   EL++D     G+   P+
Sbjct: 54  AIVDFYADWCGPCKMVAPILEEL-SKEYAGKIYIYKVNVDKEPELARDF----GIQSIPT 108
Query: 288 IY 289
           I+
Sbjct: 109 IW 110

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+++AP+++EL+  +    D    K+D  +     + ++I + PT + I+
Sbjct: 29  VDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTFIAIK 84
Query: 162 SGKKLDKFQGS 172
           +G+K+    G+
Sbjct: 85  NGEKVGDVVGA 95

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD 283
           K+  V + FFA WCG CK +AP ++EL       K+  +  KVD  +   ++   +  + 
Sbjct: 23  KNKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKVDVDK--LEETARKYNIS 75
Query: 284 GFPSIYVYKNGVRTAEYNGS 303
             P+    KNG +  +  G+
Sbjct: 76  AMPTFIAIKNGEKVGDVVGA 95

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 78  IVNEGLVELTEESFEKY--VSLGNHFV--KFYAPWCGHCQSLAPVWQELASHFKTEEDVS 133
           +V  G V++   S++++  V+ G+  V   F+A WCG C+ + PV++++ S     + V 
Sbjct: 11  LVPRGSVQVIS-SYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKI-SDTPAGDKVG 68
Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
             K+D  +   I Q   I++ PT ++ ++G+K+D   G+
Sbjct: 69  FYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGA 107

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP 286
            V I F+A WCG CK + P +E++      +K G     VD   ++++++    G+   P
Sbjct: 35  VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEV----GIRAMP 90
Query: 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +   +KNG +     G+ D  +L   I +H
Sbjct: 91  TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+ +AP+ ++ A  +    D +  K+D  +   + Q  ++ S PTL++ +
Sbjct: 31  VDFFATWCGPCKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 87
Query: 162 SGKKLDKFQGS 172
            GK++ +  G+
Sbjct: 88  GGKEVTRVVGA 98

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 215 TSENFNDVIKSG--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
           ++  ++  + SG   V + FFA WCG CK +AP  E+   +  D        K+D   E+
Sbjct: 14  SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAF----YKLD-VDEV 68
Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
           S D+  +  V   P++  YK G       G+
Sbjct: 69  S-DVAQKAEVSSMPTLIFYKGGKEVTRVVGA 98

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 86  LTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           LT+ +F++ +  G+    V F+A WCG C+ +APV +E A      + V++AK++  ++ 
Sbjct: 5   LTDANFQQAIQ-GDKPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENP 61
Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL 178
                F I S PTL+  + G+ + +  G +  E L
Sbjct: 62  ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 213 SLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +LT  NF   I+    V + F+A WCG C+ +AP  EE      D    + +AK++  + 
Sbjct: 4   TLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE- 59
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
            + +  +Q G+   P++ ++K G    +  G +  E+L
Sbjct: 60  -NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQL 96

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 214 LTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +  + F  ++K+     V +  F  WCG CK +AP +E+L  + LD    ++  K+DC Q
Sbjct: 23  VNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQ 78
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
           E +K L  + G+   P+  + K      E  G++
Sbjct: 79  E-NKTLAKELGIRVVPTFKILKENSVVGEVTGAK 111

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           + F A WCG C+ +APV+ +LA  F    +    K+D  + + I + F +++ PT L+++
Sbjct: 39  IDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFMK 95
Query: 162 SGKKLDKFQGS 172
            G   D+  G+
Sbjct: 96  EGDVKDRVVGA 106

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 214 LTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +  + F  ++K+     V +  F  WCG CK +AP +E+L  + LD    ++  K+DC Q
Sbjct: 11  VNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQ 66
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
           E +K L  + G+   P+  + K      E  G++
Sbjct: 67  E-NKTLAKELGIRVVPTFKILKENSVVGEVTGAK 99

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  +  + G   V F+A WCG C+ +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      +  +  PTLL  ++G+
Sbjct: 62  QNPGTAPKYIERGIPTLLLFKNGE 85

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ D++K+ G + + F+A WCG CK +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
                    E   G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  NPGTAPKYIE--RGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 63  NEQISETPKEPSDKPIVNEGLVELTEESFEKYVS-----------LGNH--FVKFYAPWC 109
           N+  + T    ++KP    G + LT   F K ++           LG+    V FYA WC
Sbjct: 6   NKSTTATDTVQAEKP--QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWC 63
Query: 110 GHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKF 169
           G C+ +AP+ +EL+  +  +  + I K++  +   + + F I+  PT+ ++    +    
Sbjct: 64  GPCKMVAPILEELSKEYAGK--IYIYKVNVDKEPELARDFGIQGIPTIWFVPMKGEPQVN 121
Query: 170 QGSRTLETLVNYVSKM 185
            G+ + E L  Y+ K+
Sbjct: 122 MGALSKEQLKGYIDKV 137

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
             + F+A WCG CK +AP  EEL +K    K  I    VD   EL++D     G+ G P+
Sbjct: 54  AIVDFYADWCGPCKMVAPILEEL-SKEYAGKIYIYKVNVDKEPELARDF----GIQGIPT 108
Query: 288 IY 289
           I+
Sbjct: 109 IW 110

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+ +AP+ ++ A  +    D +  K+D  +   + Q  ++ S PTL++ +
Sbjct: 24  VDFFATWCGPCKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 80
Query: 162 SGKKLDKFQGS 172
            GK++ +  G+
Sbjct: 81  GGKEVTRVVGA 91

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           ++ LT++SF+  V  + G   V F+A WC   + +AP+  E+A  ++ +  +++AK++  
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGK--LTVAKLNID 61
Query: 141 QHRSICQSFDIKSYPTLLWIESGK 164
           Q+      + I+  PTLL  ++G+
Sbjct: 62  QNPGTAPKYGIRGIPTLLLFKNGE 85

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQ 270
           LT ++F+ DV+K+ G + + F+A WC   K +AP  +E+     D   G + +AK++  Q
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIA----DEYQGKLTVAKLNIDQ 62
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 63  --NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 103

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
           F++    HC  L PV + LA+ +  +    +AK+DC   + I   F +++ PT+   ++G
Sbjct: 33  FWSERSQHCLQLTPVLESLAAQYHGQ--FILAKLDCDAEQXIAAQFGLRAIPTVYLFQNG 90
Query: 164 KKLDKFQGSRTLETLVNYVSKM 185
           + +D FQG +  E +   + K+
Sbjct: 91  QPVDGFQGPQPEEAIRALLDKV 112

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDLCNQEGVDGFP 286
           V   F++    HC +L P  E L  +     HG  ++AK+DC  E  + +  Q G+   P
Sbjct: 29  VLFYFWSERSQHCLQLTPVLESLAAQY----HGQFILAKLDCDAE--QXIAAQFGLRAIP 82
Query: 287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           ++Y+++NG     + G +  EE  + +L   +   +EL
Sbjct: 83  TVYLFQNGQPVDGFQGPQP-EEAIRALLDKVLPREEEL 119

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           +L+E S +  + L N    F A WCG C+ +AP + EL+ ++ +   +    ID  +   
Sbjct: 38  KLSEASRDGKIVLAN----FSARWCGPCKQIAPYYIELSENYPS---LMFLVIDVDELSD 90
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
              S++IK+ PT  ++  G+++DK  G+   E
Sbjct: 91  FSASWEIKATPTFFFLRDGQQVDKLVGANKPE 122

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 104 FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG 163
           F++    HC  L P+ + LA+ +  +    +AK+DC   + I   F +++ PT+   ++G
Sbjct: 33  FWSERSQHCLQLTPILESLAAQYNGQ--FILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90
Query: 164 KKLDKFQGSRTLETL 178
           + +D FQG +  E +
Sbjct: 91  QPVDGFQGPQPEEAI 105

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG  + +AP+ ++ A  +    D +  K+D  +   + Q  ++ S PTL++ +
Sbjct: 32  VDFFATWCGPSKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 88
Query: 162 SGKKLDKFQGS 172
            GK++ +  G+
Sbjct: 89  GGKEVTRVVGA 99

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V FYA WCG C+ +AP+ ++ +  +   +     K+D  +   + Q  ++ + PTLL  +
Sbjct: 29  VDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 162 SGKKLDKFQGSR 173
           +GK++ K  G+ 
Sbjct: 86  NGKEVAKVVGAN 97

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 215 TSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           T+  F+  I +   V + F+A WCG CK +AP  E+   +           K+D   EL 
Sbjct: 13  TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADF----YKLD-VDELG 67
Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
            D+  +  V   P++ ++KNG   A+  G+ 
Sbjct: 68  -DVAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 79  VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGH--------------CQSLAPVWQEL 122
           +++ ++ LT++SF+  V  + G   V F+A WCG               C+ +AP+  E+
Sbjct: 1   MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 123 ASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164
           A  ++ +  +++AK++  Q+      + I+  PTLL  ++G+
Sbjct: 61  ADEYQGK--LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 23/117 (19%)
Query: 214 LTSENFN-DVIKS-GTVFIKFFAPWCGH--------------CKRLAPTWEELGTKLLDN 257
           LT ++F+ DV+K+ G + + F+A WCG               CK +AP  +E+     D 
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA----DE 63
Query: 258 KHG-IVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             G + +AK++  Q  +     + G+ G P++ ++KNG   A   G+    +L +F+
Sbjct: 64  YQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 118

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           + F A WCG  + +APV+ +LA  F    +    K+D  + + I + F +++ PT L+++
Sbjct: 42  IDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFMK 98
Query: 162 SGKKLDKFQGS 172
            G   D+  G+
Sbjct: 99  EGDVKDRVVGA 109

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 214 LTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +  + F  ++K+     V +  F  WCG  K +AP +E+L  + LD    ++  K+DC Q
Sbjct: 10  VNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQ 65
Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
           E +K L  + G+   P+  + K      E  G++
Sbjct: 66  E-NKTLAKELGIRVVPTFKILKENSVVGEVTGAK 98

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 83  LVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
           ++ L  ++F+ +  L +H    V F+A WC  C  LAP+ +ELA  +     V   K++ 
Sbjct: 1   VIHLDSKNFDSF--LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNS 55
Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS 172
            ++  I   + + S PT+++ + G+ +D+  G+
Sbjct: 56  DENPDIAARYGVMSLPTVIFFKDGEPVDEIIGA 88

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V FYA WCG C+ +AP+ ++ +  +   +     K+D  +   + Q  ++ + PTLL  +
Sbjct: 23  VDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFK 79
Query: 162 SGKKLDKFQGS 172
           +GK++ K  G+
Sbjct: 80  NGKEVAKVVGA 90

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 98  GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL 157
           G   V F+A WCG CQ L  +   +A   +  +DV+  K+D  ++ +   ++ + S P L
Sbjct: 24  GLVLVDFFATWCGPCQRLGQILPSIA---EANKDVTFIKVDVDKNGNAADAYGVSSIPAL 80
Query: 158 LWIESG----KKLDKFQGS 172
            +++      K LD+F G+
Sbjct: 81  FFVKKEGNEIKTLDQFVGA 99

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG  + +AP+ ++ A  +    D +  K+D  +   + Q  ++ S PTL++ +
Sbjct: 24  VDFFATWCGPSKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYK 80
Query: 162 SGKKLDKFQGS 172
            GK++ +  G+
Sbjct: 81  GGKEVTRVVGA 91

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 83  LVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           L  +T++SFE+ V   +    V F+A WCG C+ +AP  + +A+ +   + + I K++  
Sbjct: 7   LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNID 64
Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLV 179
           ++      + + S PTL   + G+      G++    +V
Sbjct: 65  ENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIV 103

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 214 LTSENF-NDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +T ++F  DV+K+   V + F+A WCG C+++AP+ E +  +  D    I I K++  + 
Sbjct: 10  VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDE- 65
Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-------RDLEEL 309
            +     + GV   P++ VY+ G       G+       RDLE+ 
Sbjct: 66  -NPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDF 109

>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           +L+E S +  + L N    F A WCG  + +AP + EL+ ++ +   +    ID  +   
Sbjct: 38  KLSEASRDGKIVLAN----FSARWCGPSRQIAPYYIELSENYPS---LMFLVIDVDELSD 90
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
              S++IK+ PT  ++  G+++DK  G+   E
Sbjct: 91  FSASWEIKATPTFFFLRDGQQVDKLVGANKPE 122

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+APW   C  +  V  ELA   K    VS  K++      + + ++I S PT L+ +
Sbjct: 37  VHFWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 162 SGKKLDKFQGSRTLE 176
           + +K+D+  G+   E
Sbjct: 94  NSQKIDRLDGAHAPE 108

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+APW   C  +  V  ELA   K    VS  K++      + + ++I S PT L+ +
Sbjct: 43  VHFWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 162 SGKKLDKFQGSRTLE 176
           + +K+D+  G+   E
Sbjct: 100 NSQKIDRLDGAHAPE 114

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           V + F A WCG CK + P +  L  K       ++  +VD     ++D+  + G+ G P+
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDD--AQDVAPKYGIRGIPT 76
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFI 313
           + ++KNG   A   G+    +L +F+
Sbjct: 77  LLLFKNGEVAATKVGALSKGQLKEFL 102

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V FYA WCG  + +AP+ ++ +  +   +     K+D  +   + Q  ++ + PTLL  +
Sbjct: 29  VDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 162 SGKKLDKFQGSR 173
           +GK++ K  G+ 
Sbjct: 86  NGKEVAKVVGAN 97

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +    +V   ++D    + +    ++KS PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +    +V   ++D    + +    ++K+ PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 79  VNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
           +++G++ +T+  FE  V        V F+A WCG CQ ++P+    A+ +   + + + K
Sbjct: 5   MSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVVK 62
Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
           ++   + +  + + ++  P L  ++  + LD  +G  + + L++++
Sbjct: 63  LEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFL 108

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +     + +   DC    S C+   +KS PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKSMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 78  IVNEG-----LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELA---SHFK 127
           + N+G     +VELT+E+F+  V     + FV +Y PW  H  +   +W +L+   S  +
Sbjct: 7   VANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKR 66
Query: 128 TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQ--GSRTLETLVNYV 182
                  A+ID  ++  + +   +  +PT+ +     K + F+  G R L  + ++V
Sbjct: 67  NHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 214 LTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           LT E F+ ++      VF+ ++ PW  H       W++L       ++ +         E
Sbjct: 20  LTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE 79
Query: 272 LSKDLCNQEGVDGFPSIYVYK--NGVRTAEYNGSRDLEELYQFILKH 316
              D+  +  V GFP++  Y   +     EY+G R L  +  F+ ++
Sbjct: 80  KYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 86  LTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           LTEE+F++ +       V  +A WC  C    P+++++A  +K +      +++  +++ 
Sbjct: 9   LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK--AVFGRLNVDENQK 66
Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGS---RTLETLVN 180
           I   + + + PT L   +G+ +D   G+    TLE+ VN
Sbjct: 67  IADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVN 105

>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           + + F A WCG CK +AP +E      L N +   +  +    +    +    G+   P+
Sbjct: 27  IVVAFTATWCGPCKMIAPLFET-----LSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +VYK+GV+  +  G+   ++L   + KH
Sbjct: 82  FHVYKDGVKADDLVGASQ-DKLKALVAKH 109

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +    +V   ++D    + +    ++K  PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQDVASEXEVKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +    +V   ++D    + +    ++K  PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVNDCQDVASECEVKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           + + F A WCG CK +AP +E      L N +   +  +    +    +    G+   P+
Sbjct: 27  IVVDFTATWCGPCKMIAPLFET-----LSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81
Query: 288 IYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +VYK+GV+  +  G+   ++L   + KH
Sbjct: 82  FHVYKDGVKADDLVGASQ-DKLKALVAKH 109

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG  + + P +  L+  +    +V   ++D    + +    ++KS PT  + +
Sbjct: 25  VDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +     + +   DC    S C+   +K  PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKCMPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG C+ + P +  L+  +     + +   DC    S C+   +K  PT  + +
Sbjct: 25  VDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE---VKCTPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F A WCG  + + P +  L+  +    +V   ++D    + +    ++K+ PT  + +
Sbjct: 25  VDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 162 SGKKLDKFQGS--RTLETLVN 180
            G+K+ +F G+    LE  +N
Sbjct: 82  KGQKVGEFSGANKEKLEATIN 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-80
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	5e-53
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	5e-40
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	5e-12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-79
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-68
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-51
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-48
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-62
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-34
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-11
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-56
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	4e-36
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-31
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-50
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	6e-44
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-17
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	3e-48
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-31
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	2e-26
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	5e-48
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-35
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-33
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-30
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-25
1mek_A	120	Protein disulfide isomerase; electron transport, r	2e-44
1mek_A	120	Protein disulfide isomerase; electron transport, r	1e-41
1mek_A	120	Protein disulfide isomerase; electron transport, r	3e-18
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	3e-44
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	2e-43
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-17
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-43
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-43
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-16
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	2e-43
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	5e-43
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	2e-17
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	6e-43
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	3e-40
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	1e-16
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	6e-41
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	5e-40
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	9e-16
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	1e-39
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-19
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-39
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	4e-39
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	6e-15
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	6e-38
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-32
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	8e-23
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-37
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-36
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-32
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-31
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-20
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-13
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-37
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	7e-23
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	2e-36
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	6e-34
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	1e-13
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	1e-34
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-29
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-34
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-33
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-13
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	7e-30
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	3e-28
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-18
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	5e-07
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	3e-29
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	4e-28
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	8e-10
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	3e-28
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	2e-27
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	1e-10
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	6e-24
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	1e-18
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	8e-05
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	3e-22
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	2e-20
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-20
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-19
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-05
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-19
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	1e-17
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-18
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-16
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	3e-18
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-16
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	3e-18
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	3e-16
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	7e-18
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	4e-16
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-17
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	1e-17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-16
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-17
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	1e-16
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-17
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-14
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	4e-17
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	1e-14
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	5e-17
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-14
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	5e-17
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-13
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	7e-17
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-13
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	8e-17
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	4e-14
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	9e-17
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	3e-15
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	1e-16
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	2e-13
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	1e-16
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	7e-13
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	3e-16
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	1e-14
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	1e-04
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	3e-16
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	6e-16
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	5e-16
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	1e-15
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	5e-16
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	4e-13
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-16
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-14
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	5e-16
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	3e-13
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	6e-16
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-15
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	6e-16
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	6e-14
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	1e-15
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	9e-14
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-15
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	3e-15
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-15
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-14
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-15
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	4e-14
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-15
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	3e-13
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	2e-15
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-12
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-15
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	3e-15
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	3e-15
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-14
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	4e-15
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	4e-11
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	5e-15
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-14
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	5e-15
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	7e-11
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	6e-15
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	6e-14
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	1e-14
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-13
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	1e-14
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	2e-14
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-14
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-12
2l57_A	126	Uncharacterized protein; structural genomics, unkn	3e-14
2l57_A	126	Uncharacterized protein; structural genomics, unkn	3e-13
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	4e-14
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	5e-12
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-14
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-14
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	5e-14
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	5e-13
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	6e-14
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	4e-13
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	6e-14
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	2e-12
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	7e-14
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	2e-12
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	7e-14
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-12
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	1e-13
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	3e-11
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	1e-13
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-13
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	1e-13
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	2e-12
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	1e-13
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-12
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	1e-13
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	3e-11
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	2e-13
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	9e-13
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	2e-13
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	3e-12
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-13
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-12
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	3e-13
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	7e-12
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	4e-13
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	1e-12
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-12
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-12
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-10
2kuc_A	130	Putative disulphide-isomerase; structural genomics	7e-12
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-10
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-11
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	4e-11
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	2e-11
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	6e-11
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	8e-11
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	1e-09
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	1e-10
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	3e-08
2qsi_A	137	Putative hydrogenase expression/formation protein;	2e-10
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	3e-10
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	4e-07
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	3e-10
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	2e-08
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	9e-10
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	9e-10
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	2e-09
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	1e-07
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	7e-06
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-06
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	2e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	2e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	3e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	1e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	4e-04
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	3e-04
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	6e-04

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  243 bits (621), Expect = 3e-80
 Identities = 76/253 (30%), Positives = 139/253 (54%), Gaps = 26/253 (10%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASH 125
            +  +   +  ++      L + +F+ +V+  +   ++FYAPWCGHC+  AP ++++A+ 
Sbjct: 6   EDDLEVKEENGVL-----VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANI 60

Query: 126 FKTEE-DVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            K ++  + +AKID T    +   FD+  YPT+  ++ G+ +D ++GSRT E +V  V +
Sbjct: 61  LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVRE 119

Query: 185 MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRL 243
           +  P              +    PE  + LT ENF++V+     + ++F+APWCGHCK+L
Sbjct: 120 VSQP--------------DWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKL 165

Query: 244 APTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS 303
           AP +E+   +L      I +AKVD T E   DL  +  V G+P++ +++ G R  +YNG 
Sbjct: 166 APEYEKAAKELSKRSPPIPLAKVDATAE--TDLAKRFDVSGYPTLKIFRKG-RPYDYNGP 222

Query: 304 RDLEELYQFILKH 316
           R+   +  ++++ 
Sbjct: 223 REKYGIVDYMIEQ 235

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  173 bits (440), Expect = 5e-53
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           +D  + + ++D T    L +  +++GYPT+K  KKG   +A  + G+R    +   + E 
Sbjct: 64  KDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG---QAVDYEGSRTQEEIVAKVREV 120

Query: 66  ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELAS 124
                  P       E  + LT+E+F++ V+  +   V+FYAPWCGHC+ LAP +++ A 
Sbjct: 121 SQPDWTPP------PEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAK 174

Query: 125 HFKTEED-VSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
                   + +AK+D T    + + FD+  YPTL     G+  D + G R    +V+Y+ 
Sbjct: 175 ELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYMI 233

Query: 184 KMKGP 188
           +  G 
Sbjct: 234 EQSGA 238

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  139 bits (352), Expect = 5e-40
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 187 GPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAP 245
           GPL  + D    E           V+ L   NF++ +    TV ++F+APWCGHCK+ AP
Sbjct: 1   GPLGSEDDLEVKE--------ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAP 52

Query: 246 TWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD 305
            +E++   L D    I +AK+D T      L ++  V G+P+I + K G    +Y GSR 
Sbjct: 53  EYEKIANILKDKDPPIPVAKIDATSA--SVLASRFDVSGYPTIKILKKGQAV-DYEGSRT 109

Query: 306 LEELYQFILKHKVESHDE 323
            EE+   + +        
Sbjct: 110 QEEIVAKVREVSQPDWTP 127

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 4   DSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
                 + + +VD T E  L    +++GYPTLK F+KG       + G R+   + +++ 
Sbjct: 177 SKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG---RPYDYNGPREKYGIVDYMI 233

Query: 64  EQ 65
           EQ
Sbjct: 234 EQ 235

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  255 bits (652), Expect = 4e-79
 Identities = 72/345 (20%), Positives = 124/345 (35%), Gaps = 66/345 (19%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
            +     ++ +G +DCT+ + LC    I  YPT   F +       ++ G      +  F
Sbjct: 480 ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS---SIHEYEGHHSAEQILEF 536

Query: 62  INEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAP 117
           I +               N  +V LT  +F + V    H     V FY+PW    Q L P
Sbjct: 537 IEDL-------------RNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMP 583

Query: 118 VWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-----LDKFQGS 172
            W+ +A        +++  +DC Q+ S C   +++ YP + +                 +
Sbjct: 584 EWKRMARTLT--GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWN 641

Query: 173 RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT--VFI 230
           R   +L ++                          P+  + LT + FN+ +  G     +
Sbjct: 642 RDAYSLRSWGLGFL---------------------PQASIDLTPQTFNEKVLQGKTHWVV 680

Query: 231 KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV 290
            F+APW G  +  AP +E L   +      +   KVDC        C + G+  +PS+ +
Sbjct: 681 DFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDCQAY--PQTCQKAGIKAYPSVKL 735

Query: 291 YKNG----VRTAEYNGSRDLEELYQFILKH-------KVESHDEL 324
           Y+          E   SRD + +   I             + DEL
Sbjct: 736 YQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRNKDEL 780

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  225 bits (574), Expect = 7e-68
 Identities = 69/327 (21%), Positives = 125/327 (38%), Gaps = 53/327 (16%)

Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           +  + + + DC+    +C+D  +   P+L  FK     E     G + L  +  F  E  
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKES- 437

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHF 126
                       VN  +  L  ++F          V F+APW    ++L P  ++ ++  
Sbjct: 438 ------------VNSHVTTLGPQNFPASDK-EPWLVDFFAPWSPPSRALLPELRKASTLL 484

Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
                + +  +DCT H  +C  ++I++YPT +        + ++G  + E ++ ++  ++
Sbjct: 485 Y--GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHE-YEGHHSAEQILEFIEDLR 541

Query: 187 GPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT----VFIKFFAPWCGHCKR 242
            P                      VVSLT   FN+++K         + F++PW    + 
Sbjct: 542 NP---------------------SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV 580

Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEY-- 300
           L P W+ +   L      I +  VDC Q      C QE V  +P I  Y      A    
Sbjct: 581 LMPEWKRMARTLTGL---INVGSVDCGQY--HSFCTQENVQRYPEIRFYPQKSSKAYQYH 635

Query: 301 ---NGSRDLEELYQFILKHKVESHDEL 324
                +RD   L  + L    ++  +L
Sbjct: 636 SYNGWNRDAYSLRSWGLGFLPQASIDL 662

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  179 bits (454), Expect = 7e-51
 Identities = 56/321 (17%), Positives = 109/321 (33%), Gaps = 41/321 (12%)

Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           D  + IG V+C  ++ LC  + +  YP+L  F+ G  +   K+ G R   +L  F  + +
Sbjct: 163 DGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV--KYNGDRSKESLVAFAMQHV 220

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASH 125
                    +  V     EL+  +F   +       V +   +C   +        L   
Sbjct: 221 ---------RSTV----TELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLS 267

Query: 126 FKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
              +  V++  +DC    S+C+S D  +  T  +       D+                 
Sbjct: 268 GMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDRE---------------- 311

Query: 186 KGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAP 245
           K  +         E   E+         L++    D +      + F   +  +     P
Sbjct: 312 KSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFH--FGKNENANDP 369

Query: 246 TWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT--AEYNGS 303
             ++L T L +    I + + DC+      +C+   V   PS+ V+K         ++G 
Sbjct: 370 ELKKLKTLLKNEH--IQVVRFDCSSA--PGICSDLYV-FQPSLAVFKGQGTKEYEIHHGK 424

Query: 304 RDLEELYQFILKHKVESHDEL 324
           + L ++  F  +        L
Sbjct: 425 KILYDILAFAKESVNSHVTTL 445

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  170 bits (432), Expect = 6e-48
 Identities = 53/299 (17%), Positives = 95/299 (31%), Gaps = 36/299 (12%)

Query: 31  GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEES 90
            Y  LK      + +    +G  D                    D P +        + +
Sbjct: 70  AYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAA 129

Query: 91  FEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFD 150
                     FV FY+P   H   LAP W+E A   + +  + I  ++C   R +C+   
Sbjct: 130 VNSG---ELWFVNFYSPGSSHSHDLAPTWREFA--KEVDGLLRIGAVNCGDDRMLCRMKG 184

Query: 151 IKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEP 210
           + SYP+L    SG    K+ G R+ E+LV +  +                          
Sbjct: 185 VNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS---------------------T 223

Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           V  L++ NF + I++     + +   +C   +    +   L          + +  VDC 
Sbjct: 224 VTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLS-GMLDGLVNVGWVDCD 282

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRT------AEYNGSRDLEELYQFILKHKVESHD 322
            +    LC         + Y                +  S D +E+Y  I+ +  +   
Sbjct: 283 AQ--DSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFEL 339

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  201 bits (511), Expect = 3e-62
 Identities = 71/308 (23%), Positives = 119/308 (38%), Gaps = 28/308 (9%)

Query: 17  CTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDK 76
            T    + +  ++     + F  K  +   + F G      L +FI           +  
Sbjct: 68  ITSNSDVFSKYQLDKDGVVLF--KKFDEGRNNFEGEVTKENLLDFIKH---------NQL 116

Query: 77  PIVNEGLVELTEESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
           P+V    +E TE++  K        H + F              ++  A  FK +     
Sbjct: 117 PLV----IEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIF 172

Query: 135 AKIDCTQHRSICQSFDIKSY--PTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKK 192
              D T ++ I + F +K    P +  I   +++ K++      T           L  K
Sbjct: 173 IDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 232

Query: 193 ADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEEL 250
                           +PV  L  +NF DV   +   VF++F+APWCGHCK+LAP W++L
Sbjct: 233 IKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKL 292

Query: 251 GTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEE 308
           G    D+++ IVIAK+D T     +      V  FP++  +         +YNG R L+ 
Sbjct: 293 GETYKDHEN-IVIAKMDST----ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDG 347

Query: 309 LYQFILKH 316
             +F+   
Sbjct: 348 FKKFLESG 355

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  127 bits (320), Expect = 3e-34
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 10  VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKF---RGTRDLPTLTNFINEQI 66
                 D T  +++     +             E E +K+           +T F +  +
Sbjct: 170 FIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFL 229

Query: 67  SETPKE-----PSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVW 119
               K         +    + +  L  ++FE        N FV+FYAPWCGHC+ LAP+W
Sbjct: 230 EGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIW 289

Query: 120 QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLET 177
            +L   +K  E++ IAK+D T +    ++  + S+PTL +  +        + G RTL+ 
Sbjct: 290 DKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDG 347

Query: 178 LVNYVSK 184
              ++  
Sbjct: 348 FKKFLES 354

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           +   + I ++D T         ++  +PTLKFF   ++     + G R L     F+   
Sbjct: 298 DHENIVIAKMDSTAN--EVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESG 355

Query: 66  IS 67
             
Sbjct: 356 GQ 357

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  182 bits (464), Expect = 1e-56
 Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 28/253 (11%)

Query: 80  NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSIAK 136
           ++ L  L  ++    V        V+F+A WCGHC + AP W  LA   K     + +A 
Sbjct: 11  SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70

Query: 137 IDCTQ--HRSICQSFDIKSYPTLLWIESGK----KLDKFQGSRTLETLVNYVSKMKGPLN 190
           +DC +  + ++C+ F+I  +PT+ +  +                ++TL   +       +
Sbjct: 71  LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHH 130

Query: 191 KKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEEL 250
                             EP      + F        + + F        + +A      
Sbjct: 131 DTWPPA--------CPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLS-- 180

Query: 251 GTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELY 310
                    G+ + +V  T+    ++  + GV  FPS Y+       +      +    Y
Sbjct: 181 ------QHKGVAVRRVLNTE---ANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFY 231

Query: 311 QFILKHKVESHDE 323
              L+       E
Sbjct: 232 TAYLQRLSGLTRE 244

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  129 bits (326), Expect = 4e-36
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 198 AENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLL 255
             + S +    +P+  L ++     +        ++FFA WCGHC   APTW  L   + 
Sbjct: 1   GSHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60

Query: 256 DNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY----KNGVRTAEYNGSRDLEELYQ 311
             +  + +A +DC +E +  +C    + GFP++  +     NG          D++ L +
Sbjct: 61  AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRE 120

Query: 312 FILKHKVESHDE 323
            ++      HD 
Sbjct: 121 RLIDALESHHDT 132

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  117 bits (294), Expect = 1e-31
 Identities = 25/188 (13%), Positives = 61/188 (32%), Gaps = 13/188 (6%)

Query: 5   SEDSRVTIGQVDCTVE--KQLCADQEITGYPTLKFFKKGSES--EASKFRGTRDLPTLTN 60
           +    + +  +DC  E    +C D  I G+PT++FF   + +   A       D+ TL  
Sbjct: 61  AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRE 120

Query: 61  FINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ 120
            + + +              E       + F    +     + F        + +A    
Sbjct: 121 RLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL--- 177

Query: 121 ELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE-TLV 179
                    + V++ ++  T   ++ + F +  +P+   +     + +            
Sbjct: 178 ----DLSQHKGVAVRRVLNT-EANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYT 232

Query: 180 NYVSKMKG 187
            Y+ ++ G
Sbjct: 233 AYLQRLSG 240

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  162 bits (411), Expect = 2e-50
 Identities = 50/109 (45%), Positives = 75/109 (68%), Gaps = 2/109 (1%)

Query: 208 PEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
              V++LT  NF+D I  G  FIKF+APWCGHCK LAPTWEEL  K      G+ IA+VD
Sbjct: 4   GSTVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 63

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           CT E  +++C++  V G+P++ +++ G + +E++G RDL+ L++F+L  
Sbjct: 64  CTAE--RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ 110

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  145 bits (368), Expect = 6e-44
 Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 84  VELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH 142
           + LTE +F+  ++ G  F+KFYAPWCGHC++LAP W+EL+         V IA++DCT  
Sbjct: 8   LALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 67

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           R+IC  + ++ YPTLL    GKK+ +  G R L++L  +V  
Sbjct: 68  RNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
              + V I +VDCT E+ +C+   + GYPTL  F+ G +    +  G RDL +L  F+  
Sbjct: 52  PGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVS--EHSGGRDLDSLHRFVLS 109

Query: 65  Q 65
           Q
Sbjct: 110 Q 110

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  162 bits (411), Expect = 3e-48
 Identities = 49/265 (18%), Positives = 99/265 (37%), Gaps = 43/265 (16%)

Query: 80  NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           +  + ELT +SF+K +   N+   V+FYAPWCGHC+ L+  +++ A        V+    
Sbjct: 16  DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNC 75

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDK-----------------FQGSRTLETLVN 180
           D  +++++C  +D+  +PTL+     K                     + G+RTL  +V+
Sbjct: 76  DLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVD 135

Query: 181 YVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLT-----SENFNDVIKSGTVFIKFFAP 235
           +         KK    D   +         VV  +     S  +  +         F++ 
Sbjct: 136 FSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSI 195

Query: 236 WCGHCKRLA---PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
                K+L    PT+E+   ++      ++  +                 D    +    
Sbjct: 196 SNKKLKQLTDMNPTYEKTP-EIFKYLQKVIPEQRQS--------------DKSKLVVFDA 240

Query: 293 NGVRTAEYNGSR-DLEELYQFILKH 316
           +  +  EY G+  +  ++ +F+   
Sbjct: 241 DKDKFWEYEGNSINKNDISKFLRDT 265

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  119 bits (298), Expect = 1e-31
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 22/129 (17%)

Query: 207 KPEPVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
               +  LT ++F+  I +   T  ++F+APWCGHCK+L+ T+ +   +L      + +A
Sbjct: 15  SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL---DGVVQVA 71

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-----------------EYNGSRDLE 307
            V+C    +K LC +  V+GFP++ V++                        Y+G+R L 
Sbjct: 72  AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131

Query: 308 ELYQFILKH 316
            +  F L  
Sbjct: 132 PIVDFSLSR 140

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  105 bits (262), Expect = 2e-26
 Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 50/241 (20%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG---------------SESEASKFR 50
              +V     D    K LCA  ++ G+PTL  F+                 S      + 
Sbjct: 66  GVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYS 125

Query: 51  GTRDLPTLTNFINEQISETPKEPSDKPIVNE----------GLVELTEESFEKYVSLGNH 100
           G R L  + +F   +I    K+      +             L    ++    Y S+   
Sbjct: 126 GARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALD 185

Query: 101 F---VKFYAPWCGHCQSLA---PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY 154
           +     FY+      + L    P +++    FK  + V   +                  
Sbjct: 186 WLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQS------------DKS 233

Query: 155 PTLLWIESGKKLDKFQGSR-TLETLVNYVSK------MKGPLNKKADSPDAENASEVPVK 207
             +++     K  +++G+      +  ++         +GP +++++        + P+K
Sbjct: 234 KLVVFDADKDKFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPIK 293

Query: 208 P 208
            
Sbjct: 294 K 294

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  167 bits (423), Expect = 5e-48
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 21/247 (8%)

Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           E+    F +YV  G      +       +   P++ ELA   +    ++   ID  +   
Sbjct: 225 EIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNR--GLMNFVSIDARKFGR 282

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY-----------VSKMKGPLNKKA 193
              + ++K    L  I    +  K+   +  E   +            +  +     K  
Sbjct: 283 HAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD 342

Query: 194 DSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELG 251
            SP  ++      +   V  L  +N ++++      V + ++APWCGHCKRLAPT++EL 
Sbjct: 343 ASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELA 402

Query: 252 TKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEEL 309
               +    ++IAK+D T+           ++G+P+I +Y  G ++    Y GSR L+ L
Sbjct: 403 DTYANATSDVLIAKLDHTEN----DVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSL 458

Query: 310 YQFILKH 316
           + FI ++
Sbjct: 459 FDFIKEN 465

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  132 bits (333), Expect = 3e-35
 Identities = 42/231 (18%), Positives = 96/231 (41%), Gaps = 21/231 (9%)

Query: 66  ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELAS 124
           + +    P D  +V     +L  +SF +Y+   +    +F+APWCGHC+++AP + + A 
Sbjct: 4   MQQEAVAPEDSAVV-----KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAE 58

Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYV 182
               E+++++A+IDCT+++ +C   +I  +P+L   ++    +   ++G RT E +V ++
Sbjct: 59  TLV-EKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117

Query: 183 SKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKR 242
            K   P                       ++  +     +++SG +   F A +     +
Sbjct: 118 IKQSQPAVAVVA------------DLPAYLANETFVTPVIVQSGKIDADFNATFYSMANK 165

Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN 293
               ++ +  +  D+   + I       E       +  +        +  
Sbjct: 166 HFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQ 216

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  127 bits (320), Expect = 2e-33
 Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 7/128 (5%)

Query: 200 NASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNK 258
               V  +   VV L +++FN+ I+S   V  +FFAPWCGHCK +AP + +    L++  
Sbjct: 5   QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 64

Query: 259 HGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
             I +A++DCT+   +DLC +  + GFPS+ ++KN       +Y G R  E + QF++K 
Sbjct: 65  --ITLAQIDCTEN--QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120

Query: 317 KVESHDEL 324
              +   +
Sbjct: 121 SQPAVAVV 128

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  120 bits (301), Expect = 1e-30
 Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 25/236 (10%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSE--------SEASKFRGTRDLP 56
                +    +D     +   +  +     L      +E             F    D  
Sbjct: 265 KNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKI 324

Query: 57  TLT---------NFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH--FVKFY 105
            L          +F+    S   K        +  + +L  ++ ++ V+       V +Y
Sbjct: 325 VLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYY 384

Query: 106 APWCGHCQSLAPVWQELASHFK-TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK 164
           APWCGHC+ LAP +QELA  +     DV IAK+D T++    +   I+ YPT++    GK
Sbjct: 385 APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGK 442

Query: 165 KLD--KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSEN 218
           K +   +QGSR+L++L +++ +  G  +    +   E   +   + +    L  E 
Sbjct: 443 KSESVVYQGSRSLDSLFDFIKE-NGHFDVDGKALYEEAQEKAAEEADADAELADEE 497

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  105 bits (262), Expect = 2e-25
 Identities = 43/320 (13%), Positives = 88/320 (27%), Gaps = 52/320 (16%)

Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           +  +T+ Q+DCT  + LC +  I G+P+LK FK    + +  + G R    +  F+ +Q 
Sbjct: 62  EKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS 121

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELAS 124
                  +D P        L  E+F   V    G     F A +          +  +++
Sbjct: 122 QPAVAVVADLPA------YLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA 175

Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
               ++      +                       E      K       +    ++  
Sbjct: 176 ENADDDFKLSIYLPSAMD------------------EPVVYNGKKADIADADVFEKWLQV 217

Query: 185 MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLA 244
              P                         +    F   ++SG      F       +   
Sbjct: 218 EALPY---------------------FGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYK 256

Query: 245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
           P + EL  K    +  +    +D  +           +     ++   +     +Y   +
Sbjct: 257 PLFTELAKKN---RGLMNFVSIDARKF--GRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQ 311

Query: 305 DLEELYQFILKHKVESHDEL 324
             EE +  +    V     +
Sbjct: 312 LSEEAFDELSDKIVLESKAI 331

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  147 bits (373), Expect = 2e-44
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 203 EVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
           + P + + V+ L   NF + + +   + ++F+APWCGHCK LAP + +   KL      I
Sbjct: 1   DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
            +AKVD T+E   DL  Q GV G+P+I  ++NG   +  EY   R+ +++  ++ K 
Sbjct: 61  RLAKVDATEE--SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  140 bits (354), Expect = 1e-41
 Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 75  DKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTE-EDV 132
           D P   + ++ L + +F + ++   +  V+FYAPWCGHC++LAP + + A   K E  ++
Sbjct: 1   DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 133 SIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
            +AK+D T+   + Q + ++ YPT+ +  +G      ++   R  + +VN++ K  GP
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
           +E S + + +VD T E  L     + GYPT+KFF+ G  +   ++   R+   + N++ +
Sbjct: 55  AEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114

Query: 65  Q 65
           +
Sbjct: 115 R 115

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  146 bits (371), Expect = 3e-44
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 84  VELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
             +T+E++ + +  G+  ++FYAPWC  CQ+L P W+  A   + + +V+IAK+D T+  
Sbjct: 10  RVITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFAEWGE-DLEVNIAKVDVTEQP 67

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENAS 202
            +   F I + PT+   + G+    +QG RT +  +N++S  +    +   S  +  +S
Sbjct: 68  GLSGRFIINALPTIYHCKDGEFRR-YQGPRTKKDFINFISDKEWKSIEPVSSWFSGPSS 125

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  144 bits (366), Expect = 2e-43
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 207 KPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
               V  +T EN+ ++++ G   I+F+APWC  C+ L P WE       D +  + IAKV
Sbjct: 5   SSGNVRVITDENWRELLE-GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKV 61

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           D T++    L  +  ++  P+IY  K+G     Y G R  ++   FI   + +S + +
Sbjct: 62  DVTEQ--PGLSGRFIINALPTIYHCKDGEFR-RYQGPRTKKDFINFISDKEWKSIEPV 116

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           ED  V I +VD T +  L     I   PT+   K G   E  +++G R      NFI+++
Sbjct: 52  EDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDG---EFRRYQGPRTKKDFINFISDK 108

Query: 66  ISETPKEPSD 75
             ++ +  S 
Sbjct: 109 EWKSIEPVSS 118

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  145 bits (368), Expect = 2e-43
 Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 202 SEVPVKPE-PVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
            ++ VK E  V  L   NF++ +    TV ++F+APWCGHCK+ AP +E++ + L DN  
Sbjct: 9   DDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDP 68

Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            I +AK+D T      L ++  V G+P+I + K G    +Y+GSR  EE+   + + 
Sbjct: 69  PIAVAKIDATSA--SMLASKFDVSGYPTIKILKKGQAV-DYDGSRTQEEIVAKVREV 122

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  144 bits (366), Expect = 3e-43
 Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASH 125
           S +  +   +     G+  L + +F+ +V+  +   ++FYAPWCGHC+  AP ++++AS 
Sbjct: 3   SGSSGDDDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAST 62

Query: 126 FKTEE-DVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            K  +  +++AKID T    +   FD+  YPT+  ++ G+ +D + GSRT E +V  V +
Sbjct: 63  LKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVRE 121

Query: 185 MKGPLNKKADSPDAENAS 202
           +  P         +  +S
Sbjct: 122 VSQPDWTPPPEVTSGPSS 139

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
             D  + + ++D T    L +  +++GYPT+K  KKG   +A  + G+R    +   + E
Sbjct: 65  DNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG---QAVDYDGSRTQEEIVAKVRE 121

Query: 65  QISETPKEPSD 75
                   P +
Sbjct: 122 VSQPDWTPPPE 132

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  145 bits (367), Expect = 2e-43
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 84  VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEED--VSIAKIDC 139
           +ELT++SF+K V  S     V+FYAPWCGHC++L P W   AS  K +    V +A +D 
Sbjct: 10  IELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA 69

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
           T ++ +   + I+ +PT+   + G+    + G RT   +V+    +        +  ++ 
Sbjct: 70  TVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESG 129

Query: 200 NAS 202
            +S
Sbjct: 130 PSS 132

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  144 bits (364), Expect = 5e-43
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 208 PEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIA 264
              V+ LT ++F+  +        ++F+APWCGHCK L P W    +++ +   G + +A
Sbjct: 6   SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVES 320
            VD T    + L ++ G+ GFP+I +++ G    +Y+G R   ++    L    ++
Sbjct: 66  AVDATVN--QVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDN 119

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 2   LNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNF 61
           + +    +V +  VD TV + L +   I G+PT+K F+KG       + G R    + + 
Sbjct: 54  VKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV--DYDGGRTRSDIVSR 111

Query: 62  INEQISETPKEPS 74
             +  S+    P 
Sbjct: 112 ALDLFSDNAPPPE 124

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  143 bits (363), Expect = 6e-43
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 198 AENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKL- 254
           A N +    +P  VV LT E F+ ++      VF+ ++ PW  H       W++L     
Sbjct: 4   ASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQS 63

Query: 255 -LDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQ 311
              N    V A++D  +    D+  +  V GFP++  Y    +    EY+G R L  +  
Sbjct: 64  QKRNHLTFVAARIDGEKY--PDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDS 121

Query: 312 FILKH 316
           F+ ++
Sbjct: 122 FVFQN 126

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  136 bits (344), Expect = 3e-40
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELAS 124
           S    +      V    VELT+E+F+  V     + FV +Y PW  H  +   +W +L+ 
Sbjct: 5   SNVANDGERPSRV----VELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSM 60

Query: 125 HFKTEED---VSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLV 179
               + +      A+ID  ++  + +   +  +PT+ +     K +  ++ G R L  + 
Sbjct: 61  SQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVD 120

Query: 180 NYVSK 184
           ++V +
Sbjct: 121 SFVFQ 125

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 9/65 (13%), Positives = 27/65 (41%)

Query: 1   MLNDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTN 60
                        ++D      +     ++G+PT++++ +  + E  ++ G R L  + +
Sbjct: 62  QSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDS 121

Query: 61  FINEQ 65
           F+ + 
Sbjct: 122 FVFQN 126

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  138 bits (349), Expect = 6e-41
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 195 SPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGT 252
           S  +   S +    + V+ LT  NFN  +    G   ++F+APWCGHC+RL P W++  T
Sbjct: 3   SGSSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAAT 62

Query: 253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQ 311
            L   K  + +  V+  +   + L  Q GV GFP+I ++        +Y G R  E +  
Sbjct: 63  AL---KDVVKVGAVNADKH--QSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117

Query: 312 FILKH 316
             L  
Sbjct: 118 AALSA 122

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  135 bits (343), Expect = 5e-40
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 80  NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           ++ ++ELT  +F + V   +    V+FYAPWCGHCQ L P W++ A+  K  + V +  +
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAV 73

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKL-DKFQGSRTLETLVNYVSKMK--GP 188
           +  +H+S+   + ++ +PT+    + K   + +QG RT E +V+        GP
Sbjct: 74  NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 71.7 bits (176), Expect = 9e-16
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
              V +G V+    + L     + G+PT+K F    +++   ++G R    + +     +
Sbjct: 65  KDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGAN-KNKPEDYQGGRTGEAIVDAALSAL 123

Query: 67  SETP 70
              P
Sbjct: 124 RSGP 127

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  145 bits (365), Expect = 1e-39
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 22/250 (8%)

Query: 80  NEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEED-VSIAK 136
           ++ L  L  +S    V   +    V+F+A WCGH  + AP W+ELA+  K     +++A 
Sbjct: 11  SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70

Query: 137 IDCTQ--HRSICQSFDIKSYPTLLWIESG-KKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
           +DC +  + ++C+ F+I  +PT+ + ++  K             +     ++   L    
Sbjct: 71  LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130

Query: 194 DSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTK 253
           D+         P K   +    + N  D +    +  +    + G    L  +       
Sbjct: 131 DTWPPACPPLEPAKLNDIDGFFTRNKADYLA---LVFEREDSYLGREVTLDLSQ------ 181

Query: 254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
                H + + +V  T+    DL N+ GV  FPS Y+       +      +    Y   
Sbjct: 182 ----YHAVAVRRVLNTE---SDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSY 234

Query: 314 LKHKVESHDE 323
           L+       +
Sbjct: 235 LRGLPGLTRD 244

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 87.7 bits (216), Expect = 2e-19
 Identities = 27/233 (11%), Positives = 74/233 (31%), Gaps = 17/233 (7%)

Query: 5   SEDSRVTIGQVDCTVE--KQLCADQEITGYPTLKFFKKGSES--EASKFRGTRDLPTLTN 60
                + +  +DC  E    +C +  I G+PT++FF+  +++   A+      ++ TL  
Sbjct: 61  DWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRM 120

Query: 61  FINEQISETPKE--PSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPV 118
            + + +        P+  P+    L ++                +    + G        
Sbjct: 121 RLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGR------- 173

Query: 119 WQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLET 177
             E+         V++ ++       +   F +  +P+   +   G          +   
Sbjct: 174 --EVTLDLSQYHAVAVRRVLN-TESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSF 230

Query: 178 LVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFI 230
             +Y+  + G       +      ++         +  S+ +   ++S   +I
Sbjct: 231 YTSYLRGLPGLTRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLESALHYI 283

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  134 bits (339), Expect = 2e-39
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 80  NEGLV-ELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK 136
           + G V  +  ++F+  V     +  ++FYAPWCGHC+ L P++  L   +K ++D+ IAK
Sbjct: 5   SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64

Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKK---LDKFQGSRTLETLVNYVSKMKGPLNKKA 193
           +D T +      + ++ +PT+ +  SG K   +    G+R LE L  ++ +     ++  
Sbjct: 65  MDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTK 124

Query: 194 DSPDAENA 201
           +     ++
Sbjct: 125 EELSGPSS 132

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  133 bits (337), Expect = 4e-39
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
            PV  +  + F+ ++      V I+F+APWCGHCK+L P +  LG K    K  +VIAK+
Sbjct: 7   GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-LVIAKM 65

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA---EYNGSRDLEELYQFILKH---KVES 320
           D T        +Q  V+GFP+IY   +G +        G+RDLE L +FI +H   +  +
Sbjct: 66  DATAN--DITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123

Query: 321 HDEL 324
            +EL
Sbjct: 124 KEEL 127

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 69.7 bits (171), Expect = 6e-15
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKF-RGTRDLPTLTNFIN 63
                + I ++D T         ++ G+PT+ F   G +    KF  G RDL  L+ FI+
Sbjct: 55  KGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114

Query: 64  EQISETPKEPSDKPIVNEG 82
           E  ++  +   +    + G
Sbjct: 115 EHATKRSRTKEELSGPSSG 133

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  137 bits (347), Expect = 6e-38
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 42/249 (16%)

Query: 79  VNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTE----EDVS 133
           +   +  L  E+ ++ ++  +   V FYA WC   Q L P+++E +   K E      V 
Sbjct: 3   LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62

Query: 134 IAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK-FQGSRTLETLVNYVSKMKGPLNKK 192
            A++DC QH  I Q + I  YPTL    +G  + + ++G R+++ L +Y+ + K      
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSD---- 118

Query: 193 ADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELG 251
                            P+  +        +       I +F             +E + 
Sbjct: 119 -----------------PIQEIRDLAEITTLDRSKRNIIGYFE---QKDSDNYRVFERVA 158

Query: 252 TKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAE--YNGSRDLEEL 309
             L D+   +             D+   E   G   IY                 + +  
Sbjct: 159 NILHDDCAFLSA---------FGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVT 209

Query: 310 YQFILKHKV 318
           Y +I    V
Sbjct: 210 YNWIQDKCV 218

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  123 bits (310), Expect = 1e-32
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 7/122 (5%)

Query: 208 PEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLD---NKHGIVI 263
              + SL +EN ++++ +     + F+A WC   + L P +EE    + +   N++ +V 
Sbjct: 4   GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVF 63

Query: 264 AKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA-EYNGSRDLEELYQFILKHKVESHD 322
           A+VDC Q    D+  +  +  +P++ +++NG+    EY G R ++ L  +I + K +   
Sbjct: 64  ARVDCDQH--SDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQ 121

Query: 323 EL 324
           E+
Sbjct: 122 EI 123

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 96.6 bits (240), Expect = 8e-23
 Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 46/313 (14%)

Query: 4   DSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFIN 63
              +++V   +VDC     +     I+ YPTLK F+ G      ++RG R +  L ++I 
Sbjct: 55  FPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG-MMMKREYRGQRSVKALADYIR 113

Query: 64  EQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELA 123
           +Q S+  +E  D                        + + ++            V++ +A
Sbjct: 114 QQKSDPIQEIRD------------LAEITTLDRSKRNIIGYFE---QKDSDNYRVFERVA 158

Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
           +    +     A  D ++         I   P      S   +         +   N++ 
Sbjct: 159 NILHDDCAFLSAFGDVSKPERYSGDNIIYKPPG----HSAPDMVYLGAMTNFDVTYNWIQ 214

Query: 184 KMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKR 242
               PL                     V  +T EN  ++ + G    I F        + 
Sbjct: 215 DKCVPL---------------------VREITFENGEELTEEGLPFLILFHMK--EDTES 251

Query: 243 LAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV--YKNGVRTAEY 300
           L     E+  +L+  K  I     DC +     L  Q+     P I +  +++     ++
Sbjct: 252 LEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDF 311

Query: 301 NGSRDLEELYQFI 313
                  +L QF+
Sbjct: 312 KDVLIPGKLKQFV 324

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  139 bits (350), Expect = 1e-37
 Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 37/326 (11%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           ++ R     V+  V +     + I  +       K  +   +          +  FI E 
Sbjct: 156 DNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN 215

Query: 66  ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVW----QE 121
           I                   +TE++ +      +  + +Y          +  W      
Sbjct: 216 I-------------FGICPHMTEDNKDLIQG-KDLLIAYYDVDYEKNAKGSNYWRNRVMM 261

Query: 122 LASHFKTEEDVS-IAKIDCTQHRSICQSFDIKS----YPTLLWIESGKKLD--KFQGSRT 174
           +A  F         A             F ++S     P +    +  +    + + SR 
Sbjct: 262 VAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRD 321

Query: 175 LETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKF 232
            + L  ++        K       ++         PV  + +ENF++++  ++  V I+F
Sbjct: 322 GKALERFLQDYFDGNLK----RYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEF 377

Query: 233 FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK 292
           +APWCGHCK L P ++ELG KL  +   IVIAK+D T     D+ +   V GFP+IY   
Sbjct: 378 YAPWCGHCKNLEPKYKELGEKLSKDP-NIVIAKMDATA---NDVPSPYEVRGFPTIYFSP 433

Query: 293 NGVRTA--EYNGSRDLEELYQFILKH 316
              +    +Y G R+L +   ++ + 
Sbjct: 434 ANKKLNPKKYEGGRELSDFISYLQRE 459

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  136 bits (343), Expect = 1e-36
 Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 37/244 (15%)

Query: 84  VELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
           +ELT+++FE  +S         V+F+APWCGH + LAP ++  A+  K    V +AK+DC
Sbjct: 4   LELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK--GIVPLAKVDC 61

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
           T + + C  + +  YPTL     G++   + G RT + +V+++ K  GP           
Sbjct: 62  TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP----------- 110

Query: 200 NASEVPVKPEPVVSLTSENFND--VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
                       V L +E      +       + FF             + +  + L   
Sbjct: 111 ----------ASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAH---SEFLKAASNL--- 154

Query: 258 KHGIVIAKVDCTQELSKDLCNQEGVDG-FPSIYVYKNGVRTAEY-NGSRDLEELYQFILK 315
           +     A  +    +++   N EG+    PS    K   +T  Y        ++ +FI +
Sbjct: 155 RDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 214

Query: 316 HKVE 319
           +   
Sbjct: 215 NIFG 218

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  124 bits (312), Expect = 3e-32
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 21  KQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPS----DK 76
                +      P +       E    +   +RD   L  F+ +      K         
Sbjct: 288 SDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIP 347

Query: 77  PIVNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
              +  +  +  E+F++ V+  N    ++FYAPWCGHC++L P ++EL      + ++ I
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVI 407

Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGPLNKK 192
           AK+D T +  +   ++++ +PT+ +  + KKL+  K++G R L   ++Y+ +        
Sbjct: 408 AKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVI 466

Query: 193 ADSPDAE 199
            +    +
Sbjct: 467 QEEKPKK 473

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  121 bits (303), Expect = 3e-31
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 9/119 (7%)

Query: 210 PVVSLTSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
            V+ LT +NF   I     +G + ++FFAPWCGH KRLAP +E   T+L   K  + +AK
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRL---KGIVPLAK 58

Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
           VDCT     + CN+ GV G+P++ ++++G     Y+G R  + +   + K    +   L
Sbjct: 59  VDCTAN--TNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPL 115

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 90.3 bits (223), Expect = 3e-20
 Identities = 54/324 (16%), Positives = 106/324 (32%), Gaps = 46/324 (14%)

Query: 8   SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQIS 67
             V + +VDCT     C    ++GYPTLK F+ G E+    + G R    + + + +Q  
Sbjct: 52  GIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG--AYDGPRTADGIVSHLKKQAG 109

Query: 68  ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHF 126
                P+  P+        TEE F+K++S  +   V F+             + + AS+ 
Sbjct: 110 -----PASVPL-------RTEEEFKKFISDKDASIVGFFDDSFSEA---HSEFLKAASNL 154

Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
           +     +   ++      +   +D      +L+  S               L N      
Sbjct: 155 RDNYRFAHTNVES-----LVNEYDDNGEGIILFRPSH--------------LTNKFEDKT 195

Query: 187 GPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPT 246
               ++  +                  +T +N  D+I+   + I ++        + +  
Sbjct: 196 VAYTEQKMTSGKIKKFIQENIFGICPHMTEDNK-DLIQGKDLLIAYYDVDYEKNAKGSNY 254

Query: 247 W----EELGTKLLDNKHGIVIAKVDCT--QELSKDLCNQEGVDGFPSIYV--YKNGVRTA 298
           W      +  K LD  H +  A            D   +      P + +   K      
Sbjct: 255 WRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVM 314

Query: 299 EYNGSRDLEELYQFILKHKVESHD 322
           +   SRD + L +F+  +   +  
Sbjct: 315 QEEFSRDGKALERFLQDYFDGNLK 338

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 69.1 bits (168), Expect = 3e-13
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
           S+D  + I ++D T    + +  E+ G+PT+ F     +    K+ G R+L    +++  
Sbjct: 400 SKDPNIVIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 458

Query: 65  QISETPKEPSDKPIVNEGLVE 85
           + +  P    +KP   +   E
Sbjct: 459 EATNPPVIQEEKPKKKKKAQE 479

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  136 bits (343), Expect = 1e-37
 Identities = 31/259 (11%), Positives = 76/259 (29%), Gaps = 44/259 (16%)

Query: 68  ETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK 127
             P          + +V LTE++F++ +   +    +Y       +     +Q      +
Sbjct: 3   NFPTYDGK-----DRVVSLTEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLE 57

Query: 128 ------TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNY 181
                   +D+    +D  +   + +        +L  ++  + ++ F G    + LV +
Sbjct: 58  LVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIE-FDGEFAADVLVEF 116

Query: 182 VSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCK 241
           +  +     +  +S                     + F   I+     I FF        
Sbjct: 117 LLDLIEDPVEIINSKL-----------------EVQAFER-IEDQIKLIGFFK---SEES 155

Query: 242 RLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV--RTAE 299
                +EE                +       K +  +  +     +  Y+  +    A 
Sbjct: 156 EYYKAFEEAAEHFQP--------YIKFFATFDKGVAKKLSLK-MNEVDFYEPFMDEPIAI 206

Query: 300 YNGSRDLEELYQFILKHKV 318
            +     EEL +F+ +H+ 
Sbjct: 207 PDKPYTEEELVEFVKEHQR 225

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 96.3 bits (239), Expect = 7e-23
 Identities = 46/321 (14%), Positives = 84/321 (26%), Gaps = 56/321 (17%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           E   +    VD   E +L          +L   K     E   F G      L  F+ + 
Sbjct: 64  EHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIE---FDGEFAADVLVEFLLDL 120

Query: 66  ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASH 125
           I     E   + I ++  V+  E   ++        + F+             ++E A H
Sbjct: 121 I-----EDPVEIINSKLEVQAFERIEDQIK-----LIGFFK---SEESEYYKAFEEAAEH 167

Query: 126 FKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-KKLDKFQGSRTLETLVNYVSK 184
           F+        K   T  + + +   +K      +     + +       T E LV +V +
Sbjct: 168 FQPY-----IKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKE 222

Query: 185 MKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG---TVFIKFFAPWCGHCK 241
            + P                      +  L  E+  +  +        + F         
Sbjct: 223 HQRPT---------------------LRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGY 261

Query: 242 RLAPTWEELGTKLLDNKHGIVIAKVDCT------QELSKDLCNQEGVDGFPSIYVYKNGV 295
                 +++     D    + I  +D            K             + V     
Sbjct: 262 EFLEILKQVARDNTD-NPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADS 320

Query: 296 RTAEYNGSRDL---EELYQFI 313
              E     DL   EEL  +I
Sbjct: 321 VWMEIPDDDDLPTAEELEDWI 341

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  126 bits (318), Expect = 2e-36
 Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 11/114 (9%)

Query: 209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG--IVIA 264
            PV  + ++N+N+++   +  V I+F+APWCGHCK LAP +EELG     ++    +VIA
Sbjct: 7   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
           KVD T     D      + GFP+I +Y  G +     Y+GSR +E+L +FI ++
Sbjct: 67  KVDATANDVPD-----EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  119 bits (301), Expect = 6e-34
 Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 77  PIVNEGLV-ELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEE--- 130
           P+ +EG V  +  +++ + V     +  ++FYAPWCGHC++LAP ++EL + +   E   
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61

Query: 131 DVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
            V IAK+D T +       +I+ +PT+    +G K     + GSRT+E L+ ++++    
Sbjct: 62  RVVIAKVDATANDV---PDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY 118

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 3   NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
                 RV I +VD T         EI G+PT+K +  G++ +   + G+R +  L  FI
Sbjct: 56  KSEFKDRVVIAKVDATANDVP---DEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112

Query: 63  NEQIS 67
            E   
Sbjct: 113 AENGK 117

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score =  125 bits (315), Expect = 1e-34
 Identities = 35/246 (14%), Positives = 77/246 (31%), Gaps = 36/246 (14%)

Query: 83  LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELAS---HFKTEEDVSIAKIDC 139
           L EL ++ F++ VS+    +   A  C  CQ+   + +E          ++ + +     
Sbjct: 11  LKELAQKEFKEPVSI---KLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP 67

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAE 199
             H+   + + +   PT++         ++ G          ++ +              
Sbjct: 68  FTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHV----------- 116

Query: 200 NASEVPVKPEPVVSLTSENFNDV--IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN 257
                    +    L+ +    +  +        F    CG+C   A    +        
Sbjct: 117 --------SQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA---- 164

Query: 258 KHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
              I    +D ++   +DL  Q  V G P I + K      E+ G++       +I+   
Sbjct: 165 NDYITSKVIDASEN--QDLAEQFQVVGVPKIVINKGVA---EFVGAQPENAFLGYIMAVY 219

Query: 318 VESHDE 323
            +   E
Sbjct: 220 EKLKRE 225

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score =  111 bits (279), Expect = 2e-29
 Identities = 26/196 (13%), Positives = 67/196 (34%), Gaps = 18/196 (9%)

Query: 1   MLNDSEDS-RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLT 59
           ++ ++    ++ +        K+      +   PT+            ++ G       T
Sbjct: 50  VIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGI--RYIGLPAGLEFT 107

Query: 60  NFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVW 119
             IN     + ++P       E L  +                 F    CG+C S A + 
Sbjct: 108 TLINGIFHVSQRKPQLSEKTLELLQVVDIPI---------EIWVFVTTSCGYCPSAAVMA 158

Query: 120 QELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLV 179
            + A      + ++   ID ++++ + + F +   P ++     K + +F G++     +
Sbjct: 159 WDFALAN---DYITSKVIDASENQDLAEQFQVVGVPKIVI---NKGVAEFVGAQPENAFL 212

Query: 180 NYVSKMKGPLNKKADS 195
            Y+  +   L ++ + 
Sbjct: 213 GYIMAVYEKLKREKEQ 228

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  120 bits (302), Expect = 4e-34
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 81  EGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           +  ++LT ++F + V  G     V FYAPWCG CQ+ AP ++ LA   K    V   K+D
Sbjct: 3   QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGKVD 60

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDK----FQGSRTLETLVNYVSKMKGPLNKK 192
           C  +   CQ   IK+YP++   +  +           SR  +T+   +      L  +
Sbjct: 61  CQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  118 bits (297), Expect = 3e-33
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)

Query: 208 PEPVVSLTSENFN-DVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
           P+  + LT + FN  V++  T   + F+APWCG C+  AP +E L   +   K  +   K
Sbjct: 2   PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI---KGKVRAGK 58

Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTA----EYNGSRDLEELYQFILKH 316
           VDC        C + G+  +PS+ +Y+          E   SRD + +   I   
Sbjct: 59  VDCQAY--PQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGK 111

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 7   DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKG--SESEASKFRGTRDLPTLTNFINE 64
             +V  G+VDC    Q C    I  YP++K ++     +S   +   +RD  T+   I  
Sbjct: 51  KGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYG 110

Query: 65  QISETPKE 72
           ++     +
Sbjct: 111 KLETLQSQ 118

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  115 bits (290), Expect = 7e-30
 Identities = 23/264 (8%), Positives = 77/264 (29%), Gaps = 46/264 (17%)

Query: 64  EQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHC------QSLA 116
           E+  + P+      ++      +  ++++          + ++ P           +   
Sbjct: 1   EEGLDFPEYDGVDRVI-----NVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEE 55

Query: 117 PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE 176
            +  ELA+    ++ V    +D  +  ++ +   +    ++   +  + ++ + G  + +
Sbjct: 56  LIL-ELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE-YDGEFSAD 113

Query: 177 TLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFFAPW 236
           TLV ++  +                       E +         + I+     I +F   
Sbjct: 114 TLVEFLLDVLED------------------PVELIEGERELQAFENIEDEIKLIGYFK-- 153

Query: 237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGV- 295
                     ++E   +            +         +  +  +     I  Y+  + 
Sbjct: 154 -NKDSEHYKAFKEAAEEFHPY--------IPFFATFDSKVAKKLTLK-LNEIDFYEAFME 203

Query: 296 -RTAEYNGSRDLEELYQFILKHKV 318
                 +     EE+  F+ +H+ 
Sbjct: 204 EPVTIPDKPNSEEEIVNFVEEHRR 227

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  111 bits (279), Expect = 3e-28
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 199 ENASEVPVK--PEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKR------LAPTWEE 249
           E   + P     + V+++ ++N+ +V K    + + +  P                  E 
Sbjct: 1   EEGLDFPEYDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILEL 60

Query: 250 LGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEEL 309
               L D   G+    VD  ++    +  + G+    SIYV+K      EY+G    + L
Sbjct: 61  AAQVLEDK--GVGFGLVDSEKD--AAVAKKLGLTEEDSIYVFKEDEVI-EYDGEFSADTL 115

Query: 310 YQFILKHKVESHDEL 324
            +F+L    +  + +
Sbjct: 116 VEFLLDVLEDPVELI 130

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 31/272 (11%), Positives = 77/272 (28%), Gaps = 53/272 (19%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           ED  V  G VD   +  +     +T   ++  FK+    E  ++ G     TL  F+ + 
Sbjct: 66  EDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED---EVIEYDGEFSADTLVEFLLDV 122

Query: 66  ISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELA 123
           + +  +                E   + + ++ +    + ++             ++E A
Sbjct: 123 LEDPVELIEG------------ERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAA 167

Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG--KKLDKFQGSRTLETLVNY 181
             F     +       T    + +   +K    + + E+   + +       + E +VN+
Sbjct: 168 EEFH--PYIPFFA---TFDSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNF 221

Query: 182 VSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG---TVFIKFFAPWCG 238
           V + +                        +  L  E+  +  +        + F      
Sbjct: 222 VEEHRRST---------------------LRKLKPESMYETWEDDMDGIHIVAFAEEADP 260

Query: 239 HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
                    + +     D    + I  +D   
Sbjct: 261 DGYEFLEILKSVAQDNTD-NPDLSIIWIDPDD 291

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 16/121 (13%)

Query: 32  YPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESF 91
              + F++   E   +          + NF+ E           +  +     +L  ES 
Sbjct: 192 LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR---------RSTL----RKLKPESM 238

Query: 92  EKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS 148
            +       G H V F             + + +A       D+SI  ID      +   
Sbjct: 239 YETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPY 298

Query: 149 F 149
           +
Sbjct: 299 W 299

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  111 bits (278), Expect = 3e-29
 Identities = 19/114 (16%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 211 VVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
            + L +  F  VI     V +KF   +    K+    ++ L      +   +++A+V  +
Sbjct: 7   ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDD-LLVAEVGIS 63

Query: 270 Q---ELSKDLCNQEGVD--GFPSIYVYKNGVRTA--EYNGSRDLEELYQFILKH 316
               +L+ +L  +  +D   +P  Y++++G       Y G+  +  + +++   
Sbjct: 64  DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ 117

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  108 bits (271), Expect = 4e-28
 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 22/172 (12%)

Query: 82  GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           G + L   +F K +       VKF   +    +     ++ LA +  + +D+ +A++  +
Sbjct: 6   GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGIS 63

Query: 141 -----QHRSICQSF--DIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGPLNK 191
                 +  + + +  D +SYP       G   +   + G+  +  +  ++      L  
Sbjct: 64  DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYLGM 123

Query: 192 KADSP----------DAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIKFF 233
               P           A          +      S       K    ++K  
Sbjct: 124 PGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIM 175

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 12/139 (8%), Positives = 36/139 (25%), Gaps = 7/139 (5%)

Query: 5   SEDSRVTIGQVDCT-----VEKQLCADQEI--TGYPTLKFFKKGSESEASKFRGTRDLPT 57
           +    + + +V  +     +  +L    ++    YP    F+ G       + G   +  
Sbjct: 50  ASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGA 109

Query: 58  LTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAP 117
           +  ++  Q                    +     E   +L        +      +  A 
Sbjct: 110 IQRWLKGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAE 169

Query: 118 VWQELASHFKTEEDVSIAK 136
            + ++      + +   A 
Sbjct: 170 QYLKIMGKILDQGEDFPAS 188

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  113 bits (282), Expect = 3e-28
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 209 EPVVSLTSENFNDVIKSG---TVFIKFFAPWCGHCKRLAPTWEELGTKL-----LDNKHG 260
             VV L+ ++F+ V +        + F+   CG C+R A T+ +    L      D    
Sbjct: 23  SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82

Query: 261 IVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKHKV 318
              A V+C  E   DLC +  ++  P ++ +      R+ E  G+  LE +       +V
Sbjct: 83  ATAAAVNCASE--VDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEV 140

Query: 319 ES 320
           + 
Sbjct: 141 DE 142

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  110 bits (275), Expect = 2e-27
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 13/132 (9%)

Query: 66  ISETPKEPSDKPIVNEG--LVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQ 120
           +++         + +    +V+L+ + F +   +       V FY   CG C+  A  + 
Sbjct: 6   VAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFS 65

Query: 121 ELASHFKTEED------VSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK--KLDKFQGS 172
           + A   K E         + A ++C     +C+ +DI   P L +       + ++  G+
Sbjct: 66  KFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGT 125

Query: 173 RTLETLVNYVSK 184
            +LE +    S 
Sbjct: 126 SSLEHVAFENSH 137

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 21/190 (11%)

Query: 3   NDSEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFI 62
                   T   V+C  E  LC   +I   P L FF       +++  GT  L  +    
Sbjct: 76  GKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFEN 135

Query: 63  NEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQEL 122
           +    +  +    + +    +V+ + +         +   K Y       +       E 
Sbjct: 136 SHLEVDELESEVRRLVNKHMVVDDSLKERCI-----DMHFKLYTSKEELVKRSVSSTDES 190

Query: 123 ASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
                             +   +  +    ++ + +  +        +    L  L ++V
Sbjct: 191 GRFV--------------ETTELYATDIAGAFFSAMHYDVSLV--GTEPRERLTALEDFV 234

Query: 183 SKMKGPLNKK 192
             +K  L   
Sbjct: 235 LLVKDSLPSI 244

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 94.1 bits (234), Expect = 6e-24
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELA 123
           ++TP     + ++  G   +   + + ++         +               +  EL 
Sbjct: 3   NDTPFSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELL 62

Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
             F  + D  +A  D  Q  +I   F+++ +P  L    GK      G      L+  + 
Sbjct: 63  REFP-QFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMR 121

Query: 184 KMKGPLNKKADSPDAE 199
            +   ++  A     +
Sbjct: 122 SI---VDTPAAQETVQ 134

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           +PV + T +++   +  G + +                  EL  +         +A  D 
Sbjct: 20  QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADL 77

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            Q   + + ++  V  FP+  V+ +G      +G     EL   +   
Sbjct: 78  EQS--EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSI 123

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 6/71 (8%), Positives = 16/71 (22%), Gaps = 2/71 (2%)

Query: 6   EDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
                 +   D    + +     +  +P    F  G         G      L   +   
Sbjct: 66  PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG--KLRGALSGIHPWAELLTLMRSI 123

Query: 66  ISETPKEPSDK 76
           +     + + +
Sbjct: 124 VDTPAAQETVQ 134

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 92.1 bits (228), Expect = 3e-22
 Identities = 21/184 (11%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
           ++     I   D    K+L     I   P     + G +    ++ G         F+ +
Sbjct: 52  TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGV-RYFGLPAGHEFAAFLED 110

Query: 65  QISETPKEPSDKPIVNEGLVELTEESFEKYVSLGN--HFVKFYAPWCGHCQSLAPVWQEL 122
            +  + +E             L +E+ +   ++      + F  P C +C     +  + 
Sbjct: 111 IVDVSREET-----------NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKF 159

Query: 123 ASHFKTE--EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN 180
           A          +    ++  ++      +++ + P ++   +G+   +F+G+   +  + 
Sbjct: 160 AIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLE 219

Query: 181 YVSK 184
            +  
Sbjct: 220 KLLS 223

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 87.1 bits (215), Expect = 2e-20
 Identities = 32/220 (14%), Positives = 67/220 (30%), Gaps = 23/220 (10%)

Query: 100 HFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL 158
             + F     C +C  L  + QEL+     +    I   D  + + + + + I   P   
Sbjct: 25  KLIVFVRKDHCQYCDQLKQLVQELSE-LTDKLSYEIVDFDTPEGKELAKRYRIDRAPATT 83

Query: 159 WIESGKKLD-KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSE 217
             + GK    ++ G         ++  +                     + E  +   ++
Sbjct: 84  ITQDGKDFGVRYFGLPAGHEFAAFLEDIV-----------------DVSREETNLMDETK 126

Query: 218 NFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDL 276
                I      + F  P C +C        +   +      G I+   V+  +    + 
Sbjct: 127 QAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY--PEW 184

Query: 277 CNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +Q  V   P I +  NG    E+ G+   +   + +L  
Sbjct: 185 ADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 84.9 bits (210), Expect = 8e-20
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 8/106 (7%)

Query: 213 SLTSENFNDVIKSGTV-FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV-IAKVDCTQ 270
           +L    F+  + SG + F+ F++P C HC  LAPTW E   ++     G++ I  V+C  
Sbjct: 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV----DGLLRIGAVNCGD 156

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +    LC  +GV+ +PS++++++G+   +YNG R  E L  F ++H
Sbjct: 157 DRM--LCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQH 200

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 86  LTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
           L    F+  V+ G   FV FY+P C HC  LAP W+E A        + I  ++C   R 
Sbjct: 102 LERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL--LRIGAVNCGDDRM 159

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           +C+   + SYP+L    SG    K+ G R+ E+LV +  +
Sbjct: 160 LCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQ 199

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 10  VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           + IG V+C  ++ LC  + +  YP+L  F+ G  +   K+ G R   +L  F  + +
Sbjct: 147 LRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV--KYNGDRSKESLVAFAMQHV 201

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 83  LVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           + ++T E+   +   L +  V F+   C HC+++  V  +  +       V+I+ +D   
Sbjct: 4   IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVDSEA 60

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG 187
              + +    +  PTL++I  GK    F G      L    + +  
Sbjct: 61  RPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHH 106

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 7/112 (6%)

Query: 211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           +  +T+E      +      + F    C HCK +    ++ G +       + I+ VD  
Sbjct: 4   IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA----PQVAISSVDSE 59

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH 321
                +L  + G +  P++   ++G     ++G  +  EL           H
Sbjct: 60  AR--PELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIHHHHH 109

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 87  TEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
           T E    Y+       +      CG C  +      +  ++     V   +I     + I
Sbjct: 7   TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEI 63

Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
              + + + PT+L   +GK++ +     +LE L   +   +
Sbjct: 64  AGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 215 TSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           T E     I+    V +      CG C  +      +          +   ++       
Sbjct: 7   TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNY----VEKIEILLQDM-- 60

Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
           +++  +  V   P++ ++ NG      +    LE L + I   +
Sbjct: 61  QEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 79.1 bits (195), Expect = 3e-18
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 83  LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK-----TEEDVSIAKI 137
           L+ +T E F + +  G+  +  Y+  C HC    P   + +               I + 
Sbjct: 18  LIYITPEEFRQLLQ-GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGER 76

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG 187
           + +  R       ++  PTL++ + G+ +DK  G+      V    ++ G
Sbjct: 77  ELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEEL----GTKLLDNKHGIVIAKV 266
           ++ +T E F  +++     +  ++  C HC R  P   +        ++    G +I + 
Sbjct: 18  LIYITPEEFRQLLQGD-AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGER 76

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           + +   ++   N+ GV+G P++  YK G    +  G+       +   + 
Sbjct: 77  ELSA--ARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREI 124

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 211 VVSLTSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           V  +  + F  ++K+     V +  F  WCG  K +AP +E+L  + LD    ++  K+D
Sbjct: 7   VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLD 62

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
           C QE  K L  + G+   P+  + K      E  G+   ++L + I   +
Sbjct: 63  CNQEN-KTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR 110

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 21/107 (19%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
            E+ +++F   V         +  +  WCG  +++AP +++LA  +    DV   K+DC 
Sbjct: 8   TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIFLKLDCN 64

Query: 141 Q-HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
           Q ++++ +   I+  PT   ++    + +  G++  + L+  +   +
Sbjct: 65  QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-DKLLEAIQAAR 110

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 77.4 bits (191), Expect = 7e-18
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 211 VVSLTSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           V  +  + F  ++K+     V +  F  WCG CK +AP +E+L  + LD    ++  K+D
Sbjct: 20  VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLD 75

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
           C QE  K L  + G+   P+  + K      E  G+   ++L + I   +
Sbjct: 76  CNQEN-KTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR 123

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
            E+ +++F   V         +  +  WCG C+++AP +++LA  +    DV   K+DC 
Sbjct: 21  TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY---LDVIFLKLDCN 77

Query: 141 QH-RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
           Q  +++ +   I+  PT   ++    + +  G++  + L+  +   +
Sbjct: 78  QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-DKLLEAIQAAR 123

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           ++  F+  +S        VKF    CG C  +AP +  +++ +         ++D  Q +
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY---PQAVFLEVDVHQCQ 64

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGS--RTLETLVN 180
               + +I + PT  +  +  ++D++QG+    LE  + 
Sbjct: 65  GTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 210 PVVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
            V  + S  +F   +         +KF    CG C R+AP +  +  K        V  +
Sbjct: 2   GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLE 57

Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           VD  Q   +       +   P+   ++N VR  +Y G+ D   L + I +H
Sbjct: 58  VDVHQ--CQGTAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQH 105

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           V + E + ++ +           F++    HC  L P+ + LA+ +       +AK+DC 
Sbjct: 10  VNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAKLDCD 67

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
             + I   F +++ PT+   ++G+ +D FQG +  E +   + 
Sbjct: 68  AEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLD 110

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 209 EPVVSLTSENFNDVI-KSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
           E +V++   N   V+ +S T  V   F++    HC +L P  E L  +        ++AK
Sbjct: 7   ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAK 63

Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +DC  E  + +  Q G+   P++Y+++NG     + G +  E +   +   
Sbjct: 64  LDCDAE--QMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXV 112

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 188 PLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPT 246
           P  +  D           +    V++ T+E  + +++    + I F+APWCG C+  AP 
Sbjct: 18  PEERIDDGAKCGRCGH-SLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPI 76

Query: 247 WEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL 306
           + E   +       +   KV+ T+     L  +  +   P+I +Y+NG      NG+   
Sbjct: 77  FAETAAERAGK---VRFVKVN-TEA-EPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPK 131

Query: 307 EELYQFILKH 316
                ++ + 
Sbjct: 132 APFDNWLDEQ 141

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 76  KPIVNEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
             + +  ++  T E+ +K +       + F+APWCG C+S AP++ E A+       V  
Sbjct: 33  HSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAER--AGKVRF 90

Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKAD 194
            K++     ++   F I+S PT++   +GK +D   G+       N++ +    L++  +
Sbjct: 91  VKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQ---LSRDPN 147

Query: 195 S 195
           S
Sbjct: 148 S 148

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           ++ +F++ +         V F A WCG C+ + P +  L+  +    +V   ++D    +
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDDCQ 63

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG 171
            +    ++KS PT  + + G+K+ +F G
Sbjct: 64  DVASESEVKSMPTFQFFKKGQKVGEFSG 91

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 11/110 (10%)

Query: 211 VVSLTSEN-FNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           V  + S+  F + + +     V + F A WCG CK + P +  L  K  +    ++  +V
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEV 57

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           D      +D+ ++  V   P+   +K G +  E++G+ + E+L   I + 
Sbjct: 58  DVDD--CQDVASESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL 104

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           + F+  W   C++L  V++ +++   +  +VS   ID  ++  I + F+I + P  + I 
Sbjct: 26  LYFHTSWAEPCKALKQVFEAISNEP-SNSNVSFLSIDADENSEISELFEISAVPYFIIIH 84

Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
            G  L +  G+   +  V+ +   K  +N
Sbjct: 85  KGTILKELSGADP-KEYVSLLEDCKNSVN 112

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 210 PVVSLTS-ENFNDVIKSGT----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
           PV+ +   E F  +  +      + + F   W   CK L   +E +  +  ++   +   
Sbjct: 1   PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFL 58

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
            +D  +  + ++     +   P   +   G    E +G+ D +E    +   K
Sbjct: 59  SIDADE--NSEISELFEISAVPYFIIIHKGTILKELSGA-DPKEYVSLLEDCK 108

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 74.7 bits (184), Expect = 5e-17
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           ++ +F++ +         V F A WCG  + + P +  L+  +    +V   ++D    +
Sbjct: 18  SKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY---SNVIFLEVDVDDCQ 74

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG 171
            +    ++KS PT  + + G+K+ +F G
Sbjct: 75  DVASECEVKSMPTFQFFKKGQKVGEFSG 102

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 211 VVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           V  + S   F + + +     V + F A WCG  K + P +  L  K  +    ++  +V
Sbjct: 13  VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEV 68

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           D      +D+ ++  V   P+   +K G +  E++G+ + E+L   I + 
Sbjct: 69  DVDD--CQDVASECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL 115

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 75.1 bits (185), Expect = 5e-17
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 11/122 (9%)

Query: 70  PKEPSDKPIVNEGLVEL--TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQEL 122
           P    +     EG+V     ++ F+  ++          + F A WCG C+ +APV+ E 
Sbjct: 2   PMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY 61

Query: 123 ASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
           A  F         K+D  + + + + +++++ PT L+I+ G + DK  G+R  + L N +
Sbjct: 62  AKKF---PGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARK-DDLQNTI 117

Query: 183 SK 184
            K
Sbjct: 118 VK 119

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
             + F+  +         V I F A WCG C+ +AP + E   K        V  KVD  
Sbjct: 21  NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG----AVFLKVDVD 76

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDE 323
           +   K++  +  V+  P+    K+G    +  G+   ++L   I+KH   +   
Sbjct: 77  E--LKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHVGATAAS 127

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 74.7 bits (184), Expect = 7e-17
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           T++ F+ +++ G        + F A WCG C+ +APV+ E A  F         K+D  +
Sbjct: 13  TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF---PGAIFLKVDVDE 69

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
            + + +++++++ PT L+I+ G+K+D   G
Sbjct: 70  LKDVAEAYNVEAMPTFLFIKDGEKVDSVVG 99

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           T + F+  + +G      V I F A WCG C+ +AP + E   K        +  KVD  
Sbjct: 13  TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG----AIFLKVDVD 68

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +   KD+     V+  P+    K+G +     G    ++++  I+  
Sbjct: 69  E--LKDVAEAYNVEAMPTFLFIKDGEKVDSVVGG-RKDDIHTKIVAL 112

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 74.3 bits (183), Expect = 8e-17
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 84  VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           V+  +E FEK         V F A WC  C+ +AP++ ELA  F    +V+  K+D  + 
Sbjct: 12  VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDEL 68

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQG 171
           +++ + +++++ PT ++++ GK +DK  G
Sbjct: 69  KAVAEEWNVEAMPTFIFLKDGKLVDKTVG 97

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 201 ASEVPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
           A E  V     V    E+F     S   + + F A WC  CK +AP + EL  K  +   
Sbjct: 1   AEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--- 57

Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +   KVD   EL K +  +  V+  P+    K+G    +  G+ D + L   + KH
Sbjct: 58  -VTFLKVD-VDEL-KAVAEEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKH 110

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 73.8 bits (182), Expect = 9e-17
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           V  T    EK ++        V F+A WCG C+++AP  + LA       +V  AK+D  
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVDVD 59

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
           Q+      + + + PT ++I+ GK++D+F G+     L   +++ K
Sbjct: 60  QNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANE-TKLRETITRHK 104

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 215 TSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           T+ +   +I       + + FFA WCG C+ +AP  E L  ++ +    +  AKVD  Q 
Sbjct: 6   TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE----VEFAKVDVDQ- 60

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
            +++   +  V   P+    K+G     ++G+ +  +L + I +HK
Sbjct: 61  -NEEAAAKYSVTAMPTFVFIKDGKEVDRFSGA-NETKLRETITRHK 104

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           + E +   +   N       + F A WCG C+ +APV+ +LA  F    +    K+D  +
Sbjct: 19  SLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---PNAVFLKVDVDE 75

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
            + I + F +++ PT L+++ G   D+  G
Sbjct: 76  LKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 105

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 200 NASEVPVKPEPVVSLTS-ENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTK 253
            ++        V+S+ S E +   I+        V I F A WCG C+ +AP + +L  K
Sbjct: 3   ASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKK 62

Query: 254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +     V  KVD  +   K +  Q  V+  P+    K G       G+   EEL   +
Sbjct: 63  FPN----AVFLKVDVDE--LKPIAEQFSVEAMPTFLFMKEGDVKDRVVGA-IKEELTAKV 115

Query: 314 LKH 316
             H
Sbjct: 116 GLH 118

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           +   FE+ + L       V F+APW   C  +  V  ELA        VS  K++     
Sbjct: 19  SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVP 75

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN-YVSKMKGPLNKKADSPDAEN 200
            + + ++I S PT L+ ++ +K+D+  G  +  L   V  + S      + K       N
Sbjct: 76  EVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTDPN 135

Query: 201 ASEVP 205
           +S V 
Sbjct: 136 SSSVD 140

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 64.5 bits (157), Expect = 7e-13
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 211 VVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           V  + S   F ++++      + + F+APW   C ++     EL  +L      +   K+
Sbjct: 14  VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKL 69

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +   E   ++  +  +   P+   +KN  +    +G+    EL + + +H
Sbjct: 70  EA--EGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGA-HAPELTKKVQRH 116

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 75.9 bits (186), Expect = 3e-16
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 206 VKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
           V     V L   +F   ++      +KF              +             ++IA
Sbjct: 13  VTCTGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIA 70

Query: 265 KVDCT---QELSKDLCNQEGVD--GFPSIYVYKNGVRTAE---YNGSRDLEELYQFILKH 316
            V      +  +K L ++  VD   FPSI+++K           +    L+ L  F+  +
Sbjct: 71  TVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 130

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 82  GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASH-FKTEEDVSIAKIDC 139
           G V+L E SFEK V    +  VKF              +   +    K  +D+ IA +  
Sbjct: 17  GCVDLDELSFEKTVERFPYSVVKFDIASPYGE--KHEAFTAFSKSAHKATKDLLIATVGV 74

Query: 140 TQH-----RSICQSFDI--KSYPTLLWIESGKKLD---KFQGSRTLETLVNYVSKMKGPL 189
             +     +++   + +  K++P++   +               TL+ L  +VS      
Sbjct: 75  KDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLY 134

Query: 190 NKKAD 194
             +  
Sbjct: 135 IGRDG 139

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 7   DSRVTIGQVDCTVE-----KQLCADQEIT--GYPTLKFFKKGS-ESEASKFRGTRDLPTL 58
              + I  V          K L    ++    +P++  FK  + E           L  L
Sbjct: 64  TKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNL 123

Query: 59  TNFINEQ 65
             F++  
Sbjct: 124 KAFVSAN 130

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 84  VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           VE  E+ F + V+      V F+APWCG C+ ++P+ +ELA        + + K++  +H
Sbjct: 36  VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDH--AGRLKVVKVNVDEH 93

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             +   + ++S PTL+    G  +  + G+     L   +  
Sbjct: 94  PGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRP 135

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 188 PLNKKADSPDAENASEVPVKPEPVVSLTSENF-NDVIKSGTVFIKFFAPWCGHCKRLAPT 246
                   P               V    + F  +V  +    + FFAPWCG C+ ++P 
Sbjct: 15  GTPPPGQVPVCGACKTPLPWV---VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPI 71

Query: 247 WEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL 306
            EEL          + + KV+   E    L  + GV   P++ +++ G   A + G+   
Sbjct: 72  LEELARDHAGR---LKVVKVN-VDE-HPGLAARYGVRSVPTLVLFRRGAPVATWVGASPR 126

Query: 307 EELYQFILKH 316
             L + +  +
Sbjct: 127 RVLEERLRPY 136

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 82  GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
           G V   + +             V F+APWCG C+ +AP +Q  A+       V +AKID 
Sbjct: 47  GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL--AGQVRLAKIDT 104

Query: 140 TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             H ++     I+  P  +    G++L +  G+R    LV +V  
Sbjct: 105 QAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRG 149

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 188 PLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPT 246
           P ++ A  P         +    V  +         +    + + F+APWCG C+++AP 
Sbjct: 27  PSDRLAAGPKCGICGA-GLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQ 85

Query: 247 WEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL 306
           ++     L      + +AK+D TQ     +  +  + G P+  ++  G   A   G+R  
Sbjct: 86  FQAAAATLAGQ---VRLAKID-TQA-HPAVAGRHRIQGIPAFILFHKGRELARAAGARPA 140

Query: 307 EELYQFILKH 316
            EL  F+   
Sbjct: 141 SELVGFVRGK 150

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 72.4 bits (178), Expect = 5e-16
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           T E++ + +   N       V F A WCG C+ +AP + +LA       +V   K+D  +
Sbjct: 23  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL---PNVLFLKVDTDE 79

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
            +S+   + I++ PT ++++ GK LDK  G
Sbjct: 80  LKSVASDWAIQAMPTFMFLKEGKILDKVVG 109

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 201 ASEVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH 259
           + E  V     V   +E      +S T V + F A WCG C+ +AP + +L  KL +   
Sbjct: 13  SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--- 69

Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            ++  KVD T EL K + +   +   P+    K G    +  G+   +EL   I KH
Sbjct: 70  -VLFLKVD-TDEL-KSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKH 122

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 71.9 bits (177), Expect = 5e-16
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 84  VELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           V+ T++SF    S G     F+APWCG  + +APV +EL       + + I KID  +++
Sbjct: 4   VKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDENQ 61

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
                + + S PTLL ++ G+ ++   G +  E L   V+K
Sbjct: 62  ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 66.5 bits (163), Expect = 5e-14
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +V  T ++F+     G V   F+APWCG  K +AP  EEL  ++ D    + I K+D  +
Sbjct: 3   IVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDE 59

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH 321
              ++   + GV   P++ V K+G       G +  E L + + KH +E H
Sbjct: 60  N--QETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLEHH 108

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 72.0 bits (177), Expect = 5e-16
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 87  TEESFEKYVSLGNHFVK-----FYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           ++ +++  ++ G    K     F A WCG C+ +AP+++ L++ +     V   K+D   
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKVDVDA 66

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
             ++ ++  I + PT    + G K D   G
Sbjct: 67  VAAVAEAAGITAMPTFHVYKDGVKADDLVG 96

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 215 TSENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           +   ++  +  G      + + F A WCG CK +AP +E L          ++  KVD  
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVD 65

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                 +    G+   P+ +VYK+GV+  +  G+   ++L   + KH
Sbjct: 66  A--VAAVAEAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKH 109

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 72.0 bits (177), Expect = 6e-16
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 87  TEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
           ++  F+  +S      V F+A WCG C+ +AP ++E +  +     +   K+D  +   +
Sbjct: 15  SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVDEVSEV 71

Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQGSR--TLETLVN 180
            +  +I S PT    ++G  +D   G+    L+ L+ 
Sbjct: 72  TEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIE 108

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 215 TSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           +   F+ +I     V + FFA WCG CKR+AP +EE           +V  KVD  +   
Sbjct: 15  SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDE--V 68

Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            ++  +E +   P+  VYKNG       G+ +   L Q I K+
Sbjct: 69  SEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 71.6 bits (176), Expect = 6e-16
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 83  LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           +V++T+  F+  V  G   V F+A  CG C+ +APV +ELA+ +  E    I K+D  ++
Sbjct: 5   IVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADY--EGKADILKLDVDEN 62

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            S    +++ S PTL+  + G+ +DK  G +  E L   + K
Sbjct: 63  PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 66.2 bits (162), Expect = 6e-14
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +V +T  +F+  ++SG   + F+A  CG CK +AP  EEL            I K+D  +
Sbjct: 5   IVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDE 61

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +     +  V   P++ V+K+G    +  G +  E L + + KH
Sbjct: 62  --NPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           + FYA WCG C+ + P   +L   +    DV   K D  +   I +  ++ + PT +  +
Sbjct: 35  IDFYATWCGPCKMMQPHLTKLIQAY---PDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91

Query: 162 SGKKLDKFQGSR--TLETLVN 180
            G+ + K  G+    LE  + 
Sbjct: 92  DGQLIGKIIGANPTALEKGIK 112

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 65.8 bits (161), Expect = 9e-14
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 211 VVSLTS-ENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           +  LT+   F ++IK    + I F+A WCG CK + P   +L     D    +   K D 
Sbjct: 14  ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDV 69

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
            +  S D+  +  V   P+  + K+G    +  G+ +   L + I  
Sbjct: 70  DE--SPDIAKECEVTAMPTFVLGKDGQLIGKIIGA-NPTALEKGIKD 113

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 69  TPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASH 125
           +P+  S   I++E +    +   E  +    +    V F+A WCG C+++AP+++EL+  
Sbjct: 2   SPEFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELS-- 59

Query: 126 FKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN 180
              + D    K+D  +     + ++I + PT + I++G+K+    G     +E ++ 
Sbjct: 60  --EKYDAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIK 114

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 211 VVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           ++ L    +   +++      V + FFA WCG CK +AP ++E     L  K+  +  KV
Sbjct: 15  LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKE-----LSEKYDAIFVKV 69

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           D  +   ++   +  +   P+    KNG +  +  G+  + ++   I K 
Sbjct: 70  DVDK--LEETARKYNISAMPTFIAIKNGEKVGDVVGA-SIAKVEDMIKKF 116

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 215 TSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           + + F  V      V I F+A WCG CK + P +E++      +K  +   KVD  +   
Sbjct: 22  SYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDE--Q 77

Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +  + G+   P+   +KNG +     G+ D  +L   I +H
Sbjct: 78  SQIAQEVGIRAMPTFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
             ++     K V+ G+    + F+A WCG C+ + PV+++++      + V   K+D  +
Sbjct: 18  QVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTP-AGDKVGFYKVDVDE 76

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSR--TLETLVN 180
              I Q   I++ PT ++ ++G+K+D   G+    L+  + 
Sbjct: 77  QSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAIT 117

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 23/99 (23%), Positives = 55/99 (55%), Gaps = 7/99 (7%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
            +   +  ++  +     + F+A WCG C+ ++P   EL++  +  ++V + K+D  +  
Sbjct: 7   DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST--QFADNVVVLKVDVDECE 64

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN 180
            I   ++I S PT +++++G K+++F G  ++ LE ++ 
Sbjct: 65  DIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
              + +  +   +   V + FFA WCG CK ++P   EL T+  DN   +V+ KVD  + 
Sbjct: 7   DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE- 62

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +D+  +  +   P+    KNGV+  E+ G+ + + L   I  +
Sbjct: 63  -CEDIAMEYNISSMPTFVFLKNGVKVEEFAGA-NAKRLEDVIKAN 105

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
             F A WCG C+++    +++A  F     V  AK+D   +  I     +   PT +   
Sbjct: 42  AWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98

Query: 162 SGKKLDKFQG 171
           SGK L    G
Sbjct: 99  SGKMLGHVIG 108

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 211 VVSLTS-ENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           VV + S E F +++         F A WCG CK +    E++  +       +  AKVD 
Sbjct: 21  VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDA 76

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
               + ++ ++  V   P+  + ++G       G+ +   L Q +   
Sbjct: 77  DN--NSEIVSKCRVLQLPTFIIARSGKMLGHVIGA-NPGMLRQKLRDI 121

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           T+E +++ +S  +         F A WCG  + +AP + EL+ ++     +    ID  +
Sbjct: 31  TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVIDVDE 87

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQG--SRTLETLVN-YVSKMKGP 188
                 S++IK+ PT  ++  G+++DK  G     L   +   +  +   
Sbjct: 88  LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLPPS 137

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 13/132 (9%)

Query: 191 KKADSPDAENASEVPVKPEPVVSLTS-ENFNDVIKSGT-----VFIKFFAPWCGHCKRLA 244
            K +    ++   + +    V  +T+ E ++  +   +     V   F A WCG  +++A
Sbjct: 6   AKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIA 65

Query: 245 PTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR 304
           P + EL          ++   +D  +    D      +   P+ +  ++G +  +  G+ 
Sbjct: 66  PYYIELSENYPS----LMFLVIDVDE--LSDFSASWEIKATPTFFFLRDGQQVDKLVGA- 118

Query: 305 DLEELYQFILKH 316
           +  EL++ I   
Sbjct: 119 NKPELHKKITAI 130

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 87  TEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI 145
           T   F+  ++      V FYA WCG C+ +AP+ ++ +  +         K+D  +   +
Sbjct: 13  TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLDVDELGDV 69

Query: 146 CQSFDIKSYPTLLWIESGKKLDKFQG 171
            Q  ++ + PTLL  ++GK++ K  G
Sbjct: 70  AQKNEVSAMPTLLLFKNGKEVAKVVG 95

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 215 TSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS 273
           T+  F+  I     V + F+A WCG CK +AP  E+   +           K+D  +   
Sbjct: 13  TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDE--L 66

Query: 274 KDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            D+  +  V   P++ ++KNG   A+  G+ +   + Q I  +
Sbjct: 67  GDVAQKNEVSAMPTLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 84  VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           + L  ++F+ ++ S     V F+A WC  C  LAP+ +ELA  +     V   K++  ++
Sbjct: 2   IHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSDEN 58

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             I   + + S PT+++ + G+ +D+  G+   E +   +  
Sbjct: 59  PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKN 100

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           V+ L S+NF+  + S     + F+A WC  C  LAP  EEL          +   K++  
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSD 56

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +    D+  + GV   P++  +K+G    E  G+   EE+   I   
Sbjct: 57  EN--PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNL 101

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 70.3 bits (172), Expect = 4e-15
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHF-------------VKFYAPWCGHCQ 113
           S T  +         G + LT   F K ++   +              V FYA WCG C+
Sbjct: 8   STTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCK 67

Query: 114 SLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSR 173
            +AP+ +EL+  +     + I K++  +   + + F I+S PT+ ++    +     G+ 
Sbjct: 68  MVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGAL 125

Query: 174 TLETLVNYVSK 184
           + E L  Y+ K
Sbjct: 126 SKEQLKGYIDK 136

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 18/140 (12%)

Query: 190 NKKADSPDAENASEVPVKPEPVVSLTSENF-NDVIKSGT------------VFIKFFAPW 236
             +  S  A +  +        + LT   F   +                   + F+A W
Sbjct: 3   TSENKSTTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADW 62

Query: 237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR 296
           CG CK +AP  EEL  +       I I KV+  +E   +L    G+   P+I+       
Sbjct: 63  CGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE--PELARDFGIQSIPTIWFVPMKGE 117

Query: 297 TAEYNGSRDLEELYQFILKH 316
                G+   E+L  +I K 
Sbjct: 118 PQVNMGALSKEQLKGYIDKV 137

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           ++    +    V++ N    + F+A WC  C   +    +L  ++   + + + K+D  +
Sbjct: 27  LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLDK 84

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + S+ + F +KS PT++ +++   L +     +   L+  + K
Sbjct: 85  NESLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKK 127

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 210 PVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           P +     N  N V    T + + FFA WC  C   +   ++L          I + KVD
Sbjct: 25  PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVD 81

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +   + L  +  V   P+I + KN    A  +      +L   I KH
Sbjct: 82  LDKN--ESLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKKH 128

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 69.8 bits (171), Expect = 5e-15
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 80  NEGLVELTEESFEKYVSLGNH-------------FVKFYAPWCGHCQSLAPVWQELASHF 126
           N  ++ LT+  F   V                   V FYA WCG C+ +AP+  ELA  +
Sbjct: 8   NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY 67

Query: 127 KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             +  + I K+D  + + +  +F I+S P++L+I    K +  QG+    +    + +
Sbjct: 68  --DGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDE 123

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 212 VSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           V    +N  +    G     + F+A WCG CK +AP  +EL  +       IVI KVD  
Sbjct: 23  VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTE 79

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +E  ++L    G+   PSI       +     G+       + I + 
Sbjct: 80  KE--QELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEF 124

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 69.4 bits (170), Expect = 6e-15
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 212 VSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
            + T E   N + ++ G V + FFA WCG C+RL      +     D    +   KVD  
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD----VTFIKVDVD 63

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR---DLEELYQFILKHKVESH 321
           +  + +  +  GV   P+++  K      +        D+  +   I K K   H
Sbjct: 64  K--NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFKHHHH 116

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
              T E+    +        V F+A WCG CQ L  +   +A   K   DV+  K+D  +
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK---DVTFIKVDVDK 64

Query: 142 HRSICQSFDIKSYPTLLWIESG----KKLDKFQGSRTLETLVNYVSKMK 186
           + +   ++ + S P L +++      K LD+F G+  +  +   + K K
Sbjct: 65  NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFK 112

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           L +L   +FE+ +        V F    C  CQ + PV +EL  ++  EE      +D  
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVE 63

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + +++ Q F +K  P +L+ + G+   K  G    + +   ++ 
Sbjct: 64  EEKTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIAD 107

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           +  L +  F   +   G    + F    C  C+++ P  EEL     ++        VD 
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDV 62

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +E  K L  +  + G P I  +K+G    +  G  + +E+ Q I   
Sbjct: 63  EEE--KTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADV 108

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 209 EPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           +  + LT ENF++VI++   V +  +A WC  C    P ++++  K        V  +++
Sbjct: 4   DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLN 60

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +  ++ + ++  V   P+  ++ NG       G+ D + L   + K+
Sbjct: 61  VDE--NQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 80  NEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
            +  + LTEE+F++ + +     V  +A WC  C    P+++++A  +  +      +++
Sbjct: 3   EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLN 60

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             +++ I   + + + PT L   +G+ +D   G+   +TL + V+K
Sbjct: 61  VDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNK 106

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 70  PKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFK 127
                 +   ++ ++ LT++SF+  V  + G   V F+A WCG  + +AP+  E+A  + 
Sbjct: 11  SSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY- 69

Query: 128 TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            +  +++AK++  Q+      + I+  PTLL  ++G+      G+ +   L  ++  
Sbjct: 70  -QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 125

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 209 EPVVSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           + ++ LT ++F  DV+K+ G + + F+A WCG  K +AP  +E+  +       + +AK+
Sbjct: 22  DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKL 78

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  Q  +     + G+ G P++ ++KNG   A   G+    +L +F+  +
Sbjct: 79  NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 126

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 11/86 (12%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            + F    C +C  +      ++   + + ++  A+++  ++  +   +D    PT +++
Sbjct: 30  IIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFL 89

Query: 161 ES-GKKLDKFQGSRTLETLVNYVSKM 185
           +  G K    QG      +   ++ +
Sbjct: 90  DKEGNKFYVHQGLMRKNNIETILNSL 115

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 206 VKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
           +K     S+      +  K G    I F    C +C  +      +  +  + K  I  A
Sbjct: 6   IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKE-REGKFNIYYA 64

Query: 265 KVDCTQELSKDLCNQEGVDGFPS-IYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319
           +++  +E + DL  +   +  P+ +++ K G +   + G      +   +    V+
Sbjct: 65  RLE--EEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK 118

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
              ++E  + ++ + V  S     V FY+P C +C+++ P ++E A  +         +I
Sbjct: 5   GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEY--GSSAVFGRI 62

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
           +   +    + + ++  PT  +   G+ + +  G      L N V  M
Sbjct: 63  NIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDM 110

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           ++      +   V  S   V + F++P C +CK + P +EE   +   +    V  +++ 
Sbjct: 8   IIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINI 64

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
               +     + GV G P+   + +G    E  G      L   +   
Sbjct: 65  AT--NPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDM 110

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 84  VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           +E+T+++F++ +       V F+A WC  C+ +AP+ +E+A  +  E  + +AK+D  ++
Sbjct: 4   IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEY--EGKLLVAKLDVDEN 61

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
                 + + S PT++  + G+ ++   G++        + K
Sbjct: 62  PKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEK 103

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
            + +T +NF++ +     V + F+A WC  C+ +AP  EE+  +       +++AK+D  
Sbjct: 3   PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVD 59

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  +     +  V   P++ ++K+G       G++        I KH
Sbjct: 60  E--NPKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 66.2 bits (162), Expect = 5e-14
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
            ++LT  NF   I+  G V + F+A WCG C+ +AP  EE      D    + +AK++  
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVD 58

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  + +  +Q G+   P++ ++K G    +  G +  E+L   +   
Sbjct: 59  E--NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADV 103

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 84  VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           + LT+ +F++ +   G   V F+A WCG C+ +APV +E A      + V++AK++  ++
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAH--ADKVTVAKLNVDEN 60

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
                 F I S PTL+  + G+ + +  G +  E L   ++ 
Sbjct: 61  PETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 66.2 bits (162), Expect = 6e-14
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 81  EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
             L  +T++SFE+ V  +     V F+A WCG C+ +AP  + +A+ +   + + I K++
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEIVKLN 62

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             ++      + + S PTL   + G+      G++    +V  +  
Sbjct: 63  IDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLED 108

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
             +  +T ++F  DV+K+   V + F+A WCG C+++AP+ E +  +  D    I I K+
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKL 61

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  +  +     + GV   P++ VY+ G       G++    + + +   
Sbjct: 62  NIDE--NPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDF 109

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 4/103 (3%)

Query: 84  VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           +E+T+E+FE+ V  S     V F+APWCG C+ +AP+ +ELA  +  E  V + K++  +
Sbjct: 4   IEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVDE 61

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           + +    + I+S PTLL  ++G+ +D+  G++  E L   + K
Sbjct: 62  NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           V+ +T ENF  +V+KS   V + F+APWCG C+ +AP  EEL  +       + + KV+ 
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNV 59

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +  + +   Q G+   P++ ++KNG       G++  E L + I KH
Sbjct: 60  DE--NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH 105

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 22/109 (20%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 78  IVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA 135
            +++G++ +T+  FE  V  +     V F+A WCG CQ ++P+    A+ +   + + + 
Sbjct: 4   AMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVV 61

Query: 136 KIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           K++   + +  + + ++  P L  ++  + LD  +G  + + L++++  
Sbjct: 62  KLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDT 110

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           + V+++T   F ++V+K+   V + F+A WCG C+ ++P          D    + + K+
Sbjct: 7   KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKL 63

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +     +     +  V+G P++ + K         G    ++L  F+  H
Sbjct: 64  EIDP--NPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTH 111

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 65.8 bits (161), Expect = 7e-14
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 81  EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           E  + +++ SF++ V  + G   V F+A WCG C+ + P   E+   F     V++AK++
Sbjct: 2   EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKVN 59

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
              +     ++ ++S PTL+ +  GK +DK  G+     L  +V   +
Sbjct: 60  IDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESAQ 107

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           E  ++++  +F  DV+K+   V + F+A WCG CK + P   E+G +       + +AKV
Sbjct: 2   EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKV 58

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
           +     + +  N   V   P++ + ++G    +  G+    +L  ++   +
Sbjct: 59  NIDD--NPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESAQ 107

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 81  EGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
             +    +++ ++ +         V+F+A W   CQS AP++ +L+  +     ++  K+
Sbjct: 7   GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKV 65

Query: 138 DCTQHRSICQSFDIKSY------PTLLWIESGKKLDKFQGSRTLETLVNYV 182
           D  ++  +   + + +       PTL+  + GK+  +          V++ 
Sbjct: 66  DVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 116

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 209 EPVVSLTSENFNDVI---KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
             +     +  ++ +   K  T  ++FFA W   C+  AP + +L  K   N  G+   K
Sbjct: 7   GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKY--NCTGLNFGK 64

Query: 266 VDCTQELSKDLCNQEGVD------GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
           VD  +    D+  +  V         P++ +++ G                 +    +
Sbjct: 65  VDVGR--YTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSEE 120

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
              S  +  S   +    +KF A WC  C  +   ++   +++     V++  ID   H 
Sbjct: 27  NTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHP 82

Query: 144 SICQSFDIKSYPTLLWIESGKK----LDKFQGS--RTLETLVN 180
            +    +IK+ PT  +  +       +   +G+    +E    
Sbjct: 83  KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQ 125

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 211 VVSLTS-ENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
            + L +  + N V  S     + IKF A WC  C ++   ++        N + + +  +
Sbjct: 22  YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKN-----QLNYYYVTLVDI 76

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS---RDLEELYQFILKHKVES 320
           D        L +Q  +   P+   Y N         +    +  ++ +   K+ +E 
Sbjct: 77  DVDI--HPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLEK 131

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           ++ ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  +  +  +++AK+
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           +  Q+      + I+  PTLL  ++G+      G+ +   L  ++  
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 105

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 7/110 (6%)

Query: 209 EPVVSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           + ++ LT ++F  DV+K+ G + + F+A WCG CK +AP  +E+  +       + +AK+
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKL 58

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  Q  +     + G+ G P++ ++KNG   A   G+    +L +F+  +
Sbjct: 59  NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 71  KEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKT 128
           K       +++ ++ LT++SF+  V  + G   V F+A WCG C+ +AP+  E+A  +  
Sbjct: 2   KHHHHHHPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY-- 59

Query: 129 EEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
           +  +++AK++  Q+      + I+  PTLL  ++G+      G+ +   L  ++      
Sbjct: 60  QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAG 119

Query: 189 LNKK 192
              +
Sbjct: 120 SAME 123

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 209 EPVVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           + ++ LT ++F  DV+K+   + + F+A WCG CK +AP  +E+  +       + +AK+
Sbjct: 12  DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKL 68

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  Q  +     + G+ G P++ ++KNG   A   G+    +L +F+  +
Sbjct: 69  NIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 116

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159
           +   F +P C +C     V  E    F   + + + KID    R     + + + P +  
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEF--GDKIDVEKIDIMVDREKAIEYGLMAVPAIA- 60

Query: 160 IESGKKLDKFQGSRTLETLVNYVSK 184
           I  G    +F G+ + E L   ++ 
Sbjct: 61  IN-GV--VRFVGAPSREELFEAIND 82

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY 291
           F +P C +C       +E   +  D    I + K+D   +   +   + G+   P+I + 
Sbjct: 8   FTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR--EKAIEYGLMAVPAIAI- 61

Query: 292 KNGVRTAEYNGSRDLEELYQFILKH 316
            NGV    + G+   EEL++ I   
Sbjct: 62  -NGV--VRFVGAPSREELFEAINDE 83

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
           V F+A WCG C+ L P  +++ +       V +AK+D   H  +   +++ + PT+L ++
Sbjct: 36  VDFHAQWCGPCKILGPRLEKMVAKQ--HGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93

Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKG 187
           +G  +DKF G +  + L  ++ K+ G
Sbjct: 94  NGDVVDKFVGIKDEDQLEAFLKKLIG 119

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 215 TSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL 272
              +F + V+ S T V + F A WCG CK L P  E++  K       +V+AKVD     
Sbjct: 19  DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDD-- 73

Query: 273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             DL  +  V   P++   KNG    ++ G +D ++L  F+ K 
Sbjct: 74  HTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 29/104 (27%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           + ++ + S++++V  S     V F+APWCG C+ +APV  ELA  +     +++ K++  
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNTD 59

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           +   I   ++I+S PT+L+ ++G++ +   G+    TL + + K
Sbjct: 60  EAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEK 103

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           V  +   ++   V++S   V + F+APWCG CK +AP  +EL  +       I + K++ 
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNT 58

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +  +  +  Q  +   P++  +KNG R     G+     L   I K+
Sbjct: 59  DE--APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 104

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
               +++T+ SF   V  S     V F+A WCG C+ +APV +E+A+      D+++AK+
Sbjct: 11  KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATER--ATDLTVAKL 68

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
           D   +    ++F + S PTL+  + G+ + +  G++    L+  +S +   LN
Sbjct: 69  DVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
            + +T  +F  DV+ S   V + F+A WCG CK +AP  EE+ T+   +   + +AK+D 
Sbjct: 14  TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDV 70

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                 +      V   P++ ++K+G       G++    L + +   
Sbjct: 71  DTN--PETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDV 116

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 84  VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
             + +++F+  V  S     V F+APWCG C+ +APV  E+A  +  ++ +   K++  +
Sbjct: 4   GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDE 61

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             ++   + I+S PT++  + GKK +   G+    T+V  V K
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
             ++  + F N V++S   V + F+APWCG C+ +AP  +E+  +  D    +   K++ 
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLN- 58

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           T E S ++ ++ G+   P+I V+K G +     G+     + Q + K+
Sbjct: 59  TDE-SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 67.2 bits (163), Expect = 4e-13
 Identities = 27/229 (11%), Positives = 58/229 (25%), Gaps = 29/229 (12%)

Query: 89  ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS 148
                 V +     K     C     L  +++E +      + + +              
Sbjct: 22  AEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSE 81

Query: 149 FDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS--KMKGPLNKKADSPDAENASEVPV 206
           F ++  PT+ ++       ++ G    E +   V             +    E    +  
Sbjct: 82  FKVERVPTVAFLGGEV---RWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKG 138

Query: 207 KPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           +                           P C +C            +     +  VI   
Sbjct: 139 R-------------------VHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNP-VILSE 178

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
                 + D+ ++ GV   PSI +  NG     + G    E+   ++  
Sbjct: 179 AVEAYENPDIADKYGVMSVPSIAI--NG--YLVFVGVPYEEDFLDYVKS 223

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 63.4 bits (154), Expect = 1e-12
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            ++F       C  L  +  + +S     +  +I  +D  Q     Q FDI   P+ ++ 
Sbjct: 27  VLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84

Query: 161 ESGKKLDKFQGSRTLETLVNYV 182
            +G+ +    GS      V   
Sbjct: 85  FNGQHMKVDYGSPDHTKFVGSF 106

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           + +  +  IKS     + ++F       C +L     +  + L        I  VD  Q 
Sbjct: 10  SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDL---SKMAAIYLVDVDQT 66

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL 324
                     +   PS   + NG       GS D  +          ++  + 
Sbjct: 67  --AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSF-----KTKQDF 112

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
             F +P C HC +   V +E+A+     + V +  I+  ++      + I + PT++   
Sbjct: 7   ELFTSPMCPHCPAAKRVVEEVANEM--PDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64

Query: 162 SGKKLDKFQGSRTLETLVNYVSK 184
                 +F G+ T E LV  + K
Sbjct: 65  DV----EFIGAPTKEALVEAIKK 83

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284
           S      F +P C HC       EE+  ++ D    + +  ++  +        + G+  
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN--PQKAMEYGIMA 56

Query: 285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            P+I +  +     E+ G+   E L + I K 
Sbjct: 57  VPTIVINGDV----EFIGAPTKEALVEAIKKR 84

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 84  VELTEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPV--WQELASHFKTEEDVSIAK 136
           +   E SF + +          FV  +  WCG C+ L+ V     L + +         K
Sbjct: 9   IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADY-FNRHFVNLK 67

Query: 137 IDC--TQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGPLNK 191
           +D    +   + + + + +YPTLL+I  SG+ + +  G+     L+  V         
Sbjct: 68  MDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGH 125

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 209 EPVVSLTSENFNDVIKS-----GTVFIKFFAPWCGHCKRLAP-TWEELGTKLLDNKHGIV 262
              ++    +F + +K        +F+  F  WCG CKRL+   +++       N+H  V
Sbjct: 6   ADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH-FV 64

Query: 263 IAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH 316
             K+D  +    +L  + GV  +P++     +G       G+ D  EL + +   
Sbjct: 65  NLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 83  LVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           L E++   +   V+         +  Y      C  +      LA  F    +    K  
Sbjct: 5   LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAI 61

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
                   Q +     PT+   ++G+   KF G
Sbjct: 62  VNS---CIQHYHDNCLPTIFVYKNGQIEAKFIG 91

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 20/119 (16%)

Query: 211 VVSLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           +  ++   + + +    +   V I  +      C  +      L  K  +        K 
Sbjct: 5   LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKA 60

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL-------EELYQFILKHKV 318
                           +  P+I+VYKNG   A++ G  +        EEL   + +   
Sbjct: 61  IVN-----SCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGA 114

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 83  LVELTEESFEKYVSLGNH----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           L E++   +   V+         +  Y      C  +      LA  F    +    K  
Sbjct: 12  LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAI 68

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG 171
                   + +     PT+   ++G+   KF G
Sbjct: 69  VNS---CIEHYHDNCLPTIFVYKNGQIEGKFIG 98

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 20/119 (16%)

Query: 211 VVSLTSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           +  ++   + + +    K   V I  +      C  +      L  K  +        K 
Sbjct: 12  LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE----TKFVKA 67

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL-------EELYQFILKHKV 318
                           +  P+I+VYKNG    ++ G  +        EEL   + +   
Sbjct: 68  IVN-----SCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGA 121

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 18/121 (14%)

Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCG--------------HCQSLAPVWQELA 123
           ++ ++ LT++SF+  V  + G   V F+A WCG               C+ +AP+  E+A
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61

Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
             +  +  +++AK++  Q+      + I+  PTLL  ++G+      G+ +   L  ++ 
Sbjct: 62  DEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 119

Query: 184 K 184
            
Sbjct: 120 A 120

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 21/124 (16%)

Query: 209 EPVVSLTSENF-NDVIKS-GTVFIKFFAPWCG--------------HCKRLAPTWEELGT 252
           + ++ LT ++F  DV+K+ G + + F+A WCG               CK +AP  +E+  
Sbjct: 3   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62

Query: 253 KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQF 312
           +       + +AK++  Q  +     + G+ G P++ ++KNG   A   G+    +L +F
Sbjct: 63  EYQGK---LTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 117

Query: 313 ILKH 316
           +  +
Sbjct: 118 LDAN 121

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 21/101 (20%)

Query: 97  LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC------TQHRSICQSF 149
           L       Y A WC HCQ    ++              +  ++C      T     C   
Sbjct: 11  LRQIGGTMYGAYWCPHCQDQKELFGAAFDQ--------VPYVECSPNGPGTPQAQECTEA 62

Query: 150 DIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
            I SYPT  WI +G+    + G R+LE L    S       
Sbjct: 63  GITSYPT--WIINGR---TYTGVRSLEALAVA-SGYPLEEG 97

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 18/84 (21%)

Query: 230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----LSKDLCNQEGVDGF 285
             + A WC HC+     +     +         +  V+C+           C + G+  +
Sbjct: 17  TMYGAYWCPHCQDQKELFGAAFDQ---------VPYVECSPNGPGTPQAQECTEAGITSY 67

Query: 286 PSIYVYKNGVRTAEYNGSRDLEEL 309
           P+  +  NG     Y G R LE L
Sbjct: 68  PTWII--NGRT---YTGVRSLEAL 86

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 81  EGLVELTEESFEKYVSL-GNHFVKFYAP---WCGHCQSLAPVWQELASHFKTEEDVSIAK 136
                + E + + +++  G   V F+            LA V  EL + F     +  A+
Sbjct: 15  NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAF--PGRLVAAE 72

Query: 137 IDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKA 193
           +     R +   F +   P+L  ++  + L      +   + +  +  M   +++  
Sbjct: 73  VAAEAERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQPG 129

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 99  NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-TQHRSICQSFDIKSYPTL 157
                + A WC HCQ    ++            V  +     T     C    I SYPT 
Sbjct: 199 IGGTMYGAYWCPHCQDQKELFGAAFDQVPY---VECSPNGPGTPQAQECTEAGITSYPT- 254

Query: 158 LWIESGKKLDKFQGSRTLETLVNYVSKMKGPLN 190
            WI +G+    + G R+LE L    S       
Sbjct: 255 -WIINGR---TYTGVRSLEALAVA-SGYPLEEG 282

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 18/85 (21%)

Query: 229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----LSKDLCNQEGVDG 284
              + A WC HC+     +     +         +  V+C+           C + G+  
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQ---------VPYVECSPNGPGTPQAQECTEAGITS 251

Query: 285 FPSIYVYKNGVRTAEYNGSRDLEEL 309
           +P+  +  NG     Y G R LE L
Sbjct: 252 YPTWII--NGRT---YTGVRSLEAL 271

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 56.1 bits (135), Expect = 3e-10
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 10/110 (9%)

Query: 209 EPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           + +   T     + +    T         C +C++ A T   +       +    I  ++
Sbjct: 12  KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV-----AETKAHIYFIN 66

Query: 268 CTQ----ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +       +   ++ G+   P      +G      + S   +E+  F 
Sbjct: 67  SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 81  EGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC 139
           + L   T    ++ +              C +C+  A     + +    E    I  I+ 
Sbjct: 12  KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVA----ETKAHIYFINS 67

Query: 140 TQH------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV 182
            +       ++    + I + P  + I  G+   +   S + + + ++ 
Sbjct: 68  EEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD--LCNQEGVDGF 285
           V +  +A WC  CK           ++       V+ + + T   ++D  L     V G 
Sbjct: 34  VMLDLYADWCVACKEFEKYTFSD-PQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 92

Query: 286 PSIYVY-KNG--VRTAEYNGSRDLEELYQFILKHKVESH 321
           P+I  +   G     A   G  D E     +   +   H
Sbjct: 93  PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHHH 131

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----QHRSICQSFDIKSYPT 156
            +  YA WC  C+             K   D  + + + T    Q  ++ +  ++   PT
Sbjct: 35  MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94

Query: 157 LLWI-ESGKKLD--KFQGSRTLETLVNYVSKMKGPLNK 191
           +L+    G++    +  G    ET   ++   +   + 
Sbjct: 95  ILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHHHH 132

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Length = 140

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELA 123
           ++TP +   + ++  G   ++E   + +++        +               +  EL 
Sbjct: 3   NDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELL 62

Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
             F  +    +A  D  Q  +I   F    +P  L    G       G          ++
Sbjct: 63  HEF-PDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAE---LIN 118

Query: 184 KMKGPLNKKADSPDAE 199
            M+G +  + +    E
Sbjct: 119 LMRGLVEPQQERASLE 134

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ-SFDIKSYPTLLW 159
            V  +  WCG C++L P + E     +   +  +  ++  +       S D    P +L+
Sbjct: 50  MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109

Query: 160 I-ESGKKLDKFQGSRTLETLVNYVSKMK 186
           +  SGK   +        +   +    +
Sbjct: 110 LDPSGKVHPEIINENGNPSYKYFYVSAE 137

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS 287
           + +     WCG CK L P + E       + +  V+  ++  +E   +  + +G    P 
Sbjct: 49  LMVIIHKSWCGACKALKPKFAESTEISELSHN-FVMVNLEDEEEPKDEDFSPDG-GYIPR 106

Query: 288 IYVY-KNGVRTAEYNGSRDLEELYQF 312
           I     +G    E            F
Sbjct: 107 ILFLDPSGKVHPEIINENGNPSYKYF 132

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 8/122 (6%)

Query: 54  DLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH----FVKFYAPWC 109
           D   L  +  + + +  ++ S  P         + E F + +          V  Y    
Sbjct: 86  DENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGI 145

Query: 110 GHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKF 169
             C +L      LA+ +     V   KI    +      F     PTLL  + G+ L  F
Sbjct: 146 KGCDALNSSLICLAAEYP---MVKFCKIKA-SNTGAGDRFSSDVLPTLLVYKGGELLSNF 201

Query: 170 QG 171
             
Sbjct: 202 IS 203

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 18/115 (15%)

Query: 215 TSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           + E F + I    K  T+ +  +      C  L  +   L  +       +   K+  + 
Sbjct: 119 SGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN 174

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNG------VRTAEYNGSR-DLEELYQFILKHKV 318
                  ++   D  P++ VYK G      +   E         ++  F+ ++ +
Sbjct: 175 ---TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGL 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 38/294 (12%), Positives = 85/294 (28%), Gaps = 49/294 (16%)

Query: 3   NDSEDS-RVTIGQVDCTVEKQLCADQEITG-YPTLKFFKKGSESEASKFRGTRDLPTLTN 60
            D +D  +  + + +   +  + +   ++G            E    KF           
Sbjct: 36  KDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-K 92

Query: 61  FINEQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ 120
           F+   I    ++PS           +    + +      +  + +A +  +   L P  +
Sbjct: 93  FLMSPIKTEQRQPS-----------MMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLK 139

Query: 121 --ELASHFKTEEDVSI-----------AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD 167
             +     +  ++V I           A   C  ++  C+  D K +    W+       
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-MDFKIF----WLNLKNCNS 194

Query: 168 KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFN------D 221
                  LE L   + ++      ++D           ++ E    L S+ +        
Sbjct: 195 P---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 222 VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD 275
            +++       F      CK L  T  +  T  L       I+    +  L+ D
Sbjct: 252 NVQNAKA-WNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 54  DLPTLTNFINEQISETPKEPSDKPIVNEGLVELT-EESFEKYVSLGNH----FVKFYAPW 108
           D   L  +  + + +  ++ S  P     + EL   E F + +          V  Y   
Sbjct: 73  DEGCLRKYRRQCMQDMHQKLSFGPRYGF-VYELETGEQFLETIEKEQKVTTIVVNIYEDG 131

Query: 109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK 168
              C +L    + LA+ +     V   KI  +        F     PTLL  + G+ +  
Sbjct: 132 VRGCDALNSSLECLAAEYP---MVKFCKIRASNT-GAGDRFSSDVLPTLLVYKGGELISN 187

Query: 169 FQG 171
           F  
Sbjct: 188 FIS 190

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 215 TSENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           T E F + I    K  T+ +  +      C  L  + E L  +    K      K+  + 
Sbjct: 106 TGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVK----FCKIRASN 161

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNG------VRTAEYNGSR-DLEELYQFILKHKV 318
                  ++   D  P++ VYK G      +  AE         ++  F+ ++ +
Sbjct: 162 T---GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGL 213

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 220 NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ 279
           +D  K+    + F  P C +C R             + +    + ++     L   L   
Sbjct: 13  DDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELA 71

Query: 280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             V   P+  +    V +    G    +  +  +
Sbjct: 72  RPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPML 105

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----QELSKDLCNQEGV 282
             + F A WC  C+ L  +        L  KH   + K+D        ELS+        
Sbjct: 32  TLLVFGANWCTDCRALDKSLRNQKNTALIAKH-FEVVKIDVGNFDRNLELSQAY-GDPIQ 89

Query: 283 DGFPSIYVY-KNG-VRTAEYNG------SRDLEELYQFI 313
           DG P++ V   +G VR     G          + +Y F 
Sbjct: 90  DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFF 128

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---QHRSICQSFDIKS---Y 154
            + F A WC  C++L    +   +     +   + KID     ++  + Q++        
Sbjct: 33  LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI 92

Query: 155 PTLLWIESGKKLDKFQGSRTLET 177
           P ++ + S  K+        L  
Sbjct: 93  PAVVVVNSDGKVRYTTKGGELAN 115

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 30/118 (25%)

Query: 93  KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFK----------TEEDVSIAK------ 136
           KY       + F+   CGHCQ   P   +     +           E             
Sbjct: 32  KYT-----ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSK 86

Query: 137 --------IDCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
                    D   H     ++DI + P L  + ++   + K  G   L+  +    K 
Sbjct: 87  KIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS 144

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 26/112 (23%)

Query: 228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK------------- 274
             + F+   CGHC++  P   +   K      GI +   +  ++  +             
Sbjct: 34  TILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKDEEWLKFIRSKKIGGW 91

Query: 275 ----------DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK 315
                     D      +   P +YV  KN V  A+  G  +L++      K
Sbjct: 92  LNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 228 VFIKFFAPWCGHCKRLAP-TW--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284
           V + F +  C +C+++         +   L       V+A V       ++L  +  V G
Sbjct: 22  VMVYFHSEHCPYCQQMNTFVLSDPGVSRLL--EAR-FVVASVSVDTPEGQELARRYRVPG 78

Query: 285 FPSIYVY 291
            P+    
Sbjct: 79  TPTFVFL 85

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 34/156 (21%)

Query: 195 SPDAENASEVPVKPEPVVSLTSENFNDVIKSG----TVFIKFFAPWCGHCKRLAPTWEEL 250
           SP   +A      P  + ++ + +               IKF+A WC  C       E+ 
Sbjct: 5   SPKIVDAGTAT-VPHTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKW 63

Query: 251 GTKLLDNKHGIVIAKVDCTQELSKD--------------------------LCNQEGVDG 284
                 +     +  V     L +                           +     +  
Sbjct: 64  AQDAKFS--SANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISV 121

Query: 285 FP-SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE 319
           +P    + K+G       GS +  +    I     +
Sbjct: 122 YPSWALIGKDGDVQRIVKGSINEAQALALIRNPNAD 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.98
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.98
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.97
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.96
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.96
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.96
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.96
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.95
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.95
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.95
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.95
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.94
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.94
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.93
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.91
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.9
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.9
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.88
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.86
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.85
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.84
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.84
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.83
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.83
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.83
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.83
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.82
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.82
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.82
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.82
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.81
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.81
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.81
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.81
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.81
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.81
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.8
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.8
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.8
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.8
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.8
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.8
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.8
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.8
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.8
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.79
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.79
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.79
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.79
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.79
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.79
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.79
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.79
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.79
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.79
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.79
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.79
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.78
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.78
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.78
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.78
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.78
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.78
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.78
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.77
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.77
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.77
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.77
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.77
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.77
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.77
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.77
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.77
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.77
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.77
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.77
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.77
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.77
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.77
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.77
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.77
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.77
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.77
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.77
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.76
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.76
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.76
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.76
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.76
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.76
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.76
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.76
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.76
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.76
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.76
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.76
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.76
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.75
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.75
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.75
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.75
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.75
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.75
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.75
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.75
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.75
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.75
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.75
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.75
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.75
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.75
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.75
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.74
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.74
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.74
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.74
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.74
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.74
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.74
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.74
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.74
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.74
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.74
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.74
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.73
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.73
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.73
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.73
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.73
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.73
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.73
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.73
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.73
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.73
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.73
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.72
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.72
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.72
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.72
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.72
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.72
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.72
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.72
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.72
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.72
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.71
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.71
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.71
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.71
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.71
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.71
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.71
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.71
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.71
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.71
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.7
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.7
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.69
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.69
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.69
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.69
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.69
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.69
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.69
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.68
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.68
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.67
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.67
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.67
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.67
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.67
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.67
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.66
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.66
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.66
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.46
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.65
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.64
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.63
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.62
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.62
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.62
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.41
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.61
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.61
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.61
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.61
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.61
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.6
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.59
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.59
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.58
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.58
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.58
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.58
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.58
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.57
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.57
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.56
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.56
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.56
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.56
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.56
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.55
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.55
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.53
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.51
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.51
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.5
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.49
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.48
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.48
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.22
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.21
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.47
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.47
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.46
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.46
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.44
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.44
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.44
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.44
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.43
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.43
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.43
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.43
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.42
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.41
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.41
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.4
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.4
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.4
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.39
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.39
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.39
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.39
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.39
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.38
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.38
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.37
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.37
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.37
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.36
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.36
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.36
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.36
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.36
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.36
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.35
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.35
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.35
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.34
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.34
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.34
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.33
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.32
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.32
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.31
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.31
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.31
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.3
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.3
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.29
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.29
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.28
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.28
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.28
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.27
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.26
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.26
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.25
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.25
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.25
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.25
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.24
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.24
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.24
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.24
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.23
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.23
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.23
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.23
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.21
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.21
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.2
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.2
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.2
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.19
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.19
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.19
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.19
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.17
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.16
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.16
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.15
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.15
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.15
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.15
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.14
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.14
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.14
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.14
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.14
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.13
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.12
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.12
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.09
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.09
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.09
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.08
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.08
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.05
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.05
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.04
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.03
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.03
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.03
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.02
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.02
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.02
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.01
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.01
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.01
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.0
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.99
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.99
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.99
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.99
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.95
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.49
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.94
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.47
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.47
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.93
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.92
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.91
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.9
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.43
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.89
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.88
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.88
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.87
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.86
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.86
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.85
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.84
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.84
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.84
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.84
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.84
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.83
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.83
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.83
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.83
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.8
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.8
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.79
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.79
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.76
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.76
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.76
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.72
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.71
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.71
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.68
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.68
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.67
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.67
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.67
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.67
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.66
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.66
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.65
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.65
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.65
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.64
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.63
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.63
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.62
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.62
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.62
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.61
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.61
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.59
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.59
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.58
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.58
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.57
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.56
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.55
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.55
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.54
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.53
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.52
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.52
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.51
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.49
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.48
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.48
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.47
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.46
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.46
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.46
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.44
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.43
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.41
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.4
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.4
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.39
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.37
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.33
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.33
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.31
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.31
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.31
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.3
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.29
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.28
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.28
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.28
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.28
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.27
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.27
3me7_A	170	Putative uncharacterized protein; electron transfe	98.26
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.25
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.24
3me7_A	170	Putative uncharacterized protein; electron transfe	98.24
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.23
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.23
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.22
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.21
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.21
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.2
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.19
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.18
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.15
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.15
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.15
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.15
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.13
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.12
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.12
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.09
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.09
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.09
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.09
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.09
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.08
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.08
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.07
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.07
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.06
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.05
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.05
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.02
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.01
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.01
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.0
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.0
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.99
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.99
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.98
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.96
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	97.96
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.95
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.95
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.92
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.92
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.91
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.91
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.9
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.9
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.9
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.89
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.89
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.89
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.88
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.85
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.84
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.84
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.83
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.82
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.82
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.82
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.81
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.8
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.8
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.78
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.73
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.73

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=100.00  E-value=5.6e-42  Score=303.16  Aligned_cols=284  Identities=25%  Similarity=0.448  Sum_probs=239.8

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      +++.|+   |+.++++|++++|.. |+|++|+... .....|.|..+.++|.+|+.....+             .+.+++
T Consensus        62 ~~~~F~---~t~~~~v~~~~~v~~-~~i~lfk~f~-~~~~~~~g~~~~~~i~~fi~~~~~p-------------~v~~~~  123 (361)
T 3uem_A           62 DDIPFG---ITSNSDVFSKYQLDK-DGVVLFKKFD-EGRNNFEGEVTKENLLDFIKHNQLP-------------LVIEFT  123 (361)
T ss_dssp             SSSCEE---EECCHHHHHHTTCSS-SEEEEEESST-TSEEECCSCCCHHHHHHHHHHHSSC-------------SEEECS
T ss_pred             CCceEE---EECcHHHHHHhCCCC-CeEEEEEecC-CCccccCCcCCHHHHHHHHHHcCCC-------------cceecC
Confidence            356666   455889999999988 9999999744 4478899999999999999999876             799999


Q ss_pred             hhhHHHHhcCC--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccc--cceEEEEe
Q psy14086         88 EESFEKYVSLG--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKS--YPTLLWIE  161 (324)
Q Consensus        88 ~~~f~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~--~P~~~~~~  161 (324)
                      .+++.+....+  .++++||++||++|+.+.+.|+++|+++++  ++.|+.+|++  .+..+++.|||+.  +|+++++.
T Consensus       124 ~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~--~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~  201 (361)
T 3uem_A          124 EQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLIT  201 (361)
T ss_dssp             TTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTT--TCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEE
T ss_pred             cccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccC--ceEEEEecCChHHHHHHHHHcCCCccCCccEEEEE
Confidence            99999988554  468999999999999999999999999998  7999999999  7899999999997  99999999


Q ss_pred             CCeEeeeec---CCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc--CCcEEEEEeCCC
Q psy14086        162 SGKKLDKFQ---GSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK--SGTVFIKFFAPW  236 (324)
Q Consensus       162 ~g~~~~~~~---g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~  236 (324)
                      .|+...+|.   |.++.++|.+|+.+++.+..++....   .+.+..+....|..+++++|++.+.  +++++|.||++|
T Consensus       202 ~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s---~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~w  278 (361)
T 3uem_A          202 LEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS---QELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPW  278 (361)
T ss_dssp             CC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBC---CCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTT
T ss_pred             cCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccC---CCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCc
Confidence            866655676   78999999999999999875443222   1133334567899999999999873  468999999999


Q ss_pred             ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC--eeeeeecCCCCHHHHHHHHH
Q psy14086        237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       237 c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g--~~~~~~~g~~~~~~l~~fi~  314 (324)
                      |++|+.+.|.|++++.+ +....++.++.+|++.  +.  +.+++|+++||+++|+.|  +.+..|.|.++.+.|.+||+
T Consensus       279 C~~C~~~~p~~~~la~~-~~~~~~v~~~~vd~~~--~~--~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~  353 (361)
T 3uem_A          279 CGHCKQLAPIWDKLGET-YKDHENIVIAKMDSTA--NE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE  353 (361)
T ss_dssp             CHHHHHHHHHHHHHHHH-TTTCSSEEEEEEETTT--CB--CSSCCCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHT
T ss_pred             CHhHHHHHHHHHHHHHH-hccCCcEEEEEEECCc--cc--hhhcCCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHH
Confidence            99999999999999955 5554579999999988  44  678999999999999655  45678999999999999999


Q ss_pred             hhccc
Q psy14086        315 KHKVE  319 (324)
Q Consensus       315 ~~~~~  319 (324)
                      ++.+.
T Consensus       354 ~~~~~  358 (361)
T 3uem_A          354 SGGQD  358 (361)
T ss_dssp             TTSCS
T ss_pred             hcCCC
Confidence            87653

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=7.2e-42  Score=330.61  Aligned_cols=268  Identities=25%  Similarity=0.551  Sum_probs=238.6

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      ++|.|+.|||++++.+|++|||+++||+++|+.|.   ...|.|.++.++|.+|+.+.+.+             .+..|+
T Consensus       486 ~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~---~~~~~g~~~~~~l~~fi~~~~~~-------------~v~~l~  549 (780)
T 3apo_A          486 GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSS---IHEYEGHHSAEQILEFIEDLRNP-------------SVVSLT  549 (780)
T ss_dssp             TTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE---EEEECSCSCHHHHHHHHHHHHSC-------------SEEECC
T ss_pred             CCeEEEEEeCCCCHHHHHHcCCCcCCeEEEEcCCc---eeeecCcccHHHHHHHHHhhccc-------------ceeecC
Confidence            46999999999999999999999999999998544   47899999999999999999975             799999


Q ss_pred             hhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         88 EESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        88 ~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      .++|++++..    ..++|.||+|||++|+.+.|.|+++|+.+++  ++.|+.+||+.+..+|++++|+++|++++|+.|
T Consensus       550 ~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~  627 (780)
T 3apo_A          550 PSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQK  627 (780)
T ss_dssp             HHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEECCC
T ss_pred             cccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--CeEEEEEECcchHHHHHHcCCCCCCeEEEEcCC
Confidence            9999998843    3579999999999999999999999999987  899999999999999999999999999999886


Q ss_pred             eE----eeeecC-CCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc-c-CCcEEEEEeCCC
Q psy14086        164 KK----LDKFQG-SRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI-K-SGTVFIKFFAPW  236 (324)
Q Consensus       164 ~~----~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~  236 (324)
                      ..    ...|.| .++.++|.+||.+.+.                     +.+..++.++|++.+ . +++++|.||++|
T Consensus       628 ~~~~~~~~~y~g~~~~~~~l~~fi~~~~~---------------------~~v~~l~~~~~~~~~~~~~~~v~v~F~a~w  686 (780)
T 3apo_A          628 SSKAYQYHSYNGWNRDAYSLRSWGLGFLP---------------------QASIDLTPQTFNEKVLQGKTHWVVDFYAPW  686 (780)
T ss_dssp             SSSCCSCEECCCSCCSHHHHHHHHHTTSC---------------------CCSEEECHHHHHHHTTTCSSCEEEEEECTT
T ss_pred             CcCccchhhcCCCCCCHHHHHHHHhhhcc---------------------cccccCCHHHHHHHHhcCCCeEEEEEECCC
Confidence            43    456899 8999999999998764                     458899999997644 3 458999999999


Q ss_pred             ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC----CCCHHHHHHH
Q psy14086        237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG----SRDLEELYQF  312 (324)
Q Consensus       237 c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g----~~~~~~l~~f  312 (324)
                      |++|+.+.|.|++++.+ +..  ++.|+.+|++.  ++.++++++|.++|++++|++|+.+..+.|    .++.+.|.+|
T Consensus       687 C~~C~~~~p~~~~la~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~g~~~~~~l~~~  761 (780)
T 3apo_A          687 SGPSQNFAPEFELLARM-IKG--KVRAGKVDCQA--YPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL  761 (780)
T ss_dssp             CHHHHHHHHHHHHHHHH-HTT--TCEEEEEETTT--CHHHHHHTTCCSSSEEEEEEEETTTTEEEEEEECCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH-hcC--CceEEEEECCC--CHHHHHhcCCCcCCEEEEEcCCCccccccCcccCCcCHHHHHHH
Confidence            99999999999999966 444  69999999999  899999999999999999998877655666    5799999999


Q ss_pred             HHhhccc
Q psy14086        313 ILKHKVE  319 (324)
Q Consensus       313 i~~~~~~  319 (324)
                      |.+.+..
T Consensus       762 l~~~l~~  768 (780)
T 3apo_A          762 IYGKLET  768 (780)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHH
Confidence            9998764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=7.1e-40  Score=316.71  Aligned_cols=267  Identities=25%  Similarity=0.560  Sum_probs=239.5

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      ..|.|+.+||..++.+|++|++.. |++.+|+..+......|.|..+.++|.+|+.....+             .+..++
T Consensus       381 ~~i~f~~~D~~~~~~~~~~~~~~~-p~i~l~~~~~~e~~~~~~g~~~~~~i~~f~~~~~~~-------------~v~~l~  446 (780)
T 3apo_A          381 EHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNS-------------HVTTLG  446 (780)
T ss_dssp             GTEEEEEEEGGGCHHHHHHTTCCS-CEEEEEESSTTSSEEECCSCCCHHHHHHHHHHHHTS-------------CEEECC
T ss_pred             CceeEEEEeCCCchhhHhhccccC-ChhhhccCCCcceeeecccHhhHHHHHHHhhhccCC-------------CCEecC
Confidence            568999999999999999999986 999999965422356789999999999999998865             789999


Q ss_pred             hhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEee
Q psy14086         88 EESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD  167 (324)
Q Consensus        88 ~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~  167 (324)
                      .++|.+. ..++++|.||++||++|+.+.|.|+++++.+++  ++.|+.||++++..+++.|||+++|+++++++|+. .
T Consensus       447 ~~~~~~~-~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~  522 (780)
T 3apo_A          447 PQNFPAS-DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI-H  522 (780)
T ss_dssp             TTTSCTT-CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEE-E
T ss_pred             HHHHHHc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCcCCeEEEEcCCce-e
Confidence            9999877 677899999999999999999999999999987  79999999999999999999999999999988866 6


Q ss_pred             eecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC----CcEEEEEeCCCChhhhhh
Q psy14086        168 KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS----GTVFIKFFAPWCGHCKRL  243 (324)
Q Consensus       168 ~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~----~~~~v~f~~~~c~~C~~~  243 (324)
                      .|.|.++.++|.+|+.+.+.                     +.|..|+.++|++++..    ..++|.||+|||++|+.+
T Consensus       523 ~~~g~~~~~~l~~fi~~~~~---------------------~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~  581 (780)
T 3apo_A          523 EYEGHHSAEQILEFIEDLRN---------------------PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVL  581 (780)
T ss_dssp             EECSCSCHHHHHHHHHHHHS---------------------CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHH
T ss_pred             eecCcccHHHHHHHHHhhcc---------------------cceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHh
Confidence            79999999999999999987                     56999999999998854    358999999999999999


Q ss_pred             hHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee----eeeecC-CCCHHHHHHHHHhhcc
Q psy14086        244 APTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR----TAEYNG-SRDLEELYQFILKHKV  318 (324)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~----~~~~~g-~~~~~~l~~fi~~~~~  318 (324)
                      .|.|+++|.. +..  ++.|+.+|++.  +..+++.++|+++|++++|+.|..    +..|.| .++.++|.+||.+.+.
T Consensus       582 ~p~~~~lA~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  656 (780)
T 3apo_A          582 MPEWKRMART-LTG--LINVGSVDCGQ--YHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP  656 (780)
T ss_dssp             HHHHHHHHHH-HTT--TSEEEEEETTT--THHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHH-hhC--CeEEEEEECcc--hHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc
Confidence            9999999965 554  69999999998  889999999999999999987643    557899 7999999999998764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=100.00  E-value=2.4e-38  Score=264.36  Aligned_cols=222  Identities=33%  Similarity=0.748  Sum_probs=195.3

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceE
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ...+..++.++|++.+.+ ++++|+||++||++|+.+.|.|.++++.+++. ..+.|+.+|++.+..++++|+|+++|++
T Consensus        14 ~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (241)
T 3idv_A           14 ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI   93 (241)
T ss_dssp             ETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEE
Confidence            457999999999998854 46899999999999999999999999999762 2399999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC-CcEEEEEeCCC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS-GTVFIKFFAPW  236 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~  236 (324)
                      +++++|+.+ .|.|.++.++|.+|+.+......              ...+..+..++.++|++.+.. ++++|.||++|
T Consensus        94 ~~~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~w  158 (241)
T 3idv_A           94 KILKKGQAV-DYEGSRTQEEIVAKVREVSQPDW--------------TPPPEVTLVLTKENFDEVVNDADIILVEFYAPW  158 (241)
T ss_dssp             EEEETTEEE-ECCSCSCHHHHHHHHHHHHSTTC--------------CCCCCSSEECCTTTHHHHHHHCSEEEEEEECTT
T ss_pred             EEEcCCCcc-cccCcccHHHHHHHHhhccCccc--------------ccccccceeccHHHHHHhhccCCeEEEEEECCC
Confidence            999998876 59999999999999999987431              122356888999999988854 57999999999


Q ss_pred             ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        237 CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       237 c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      |++|+.+.|.|.+++.++......+.|+.+|++.  +++++++|+|+++||+++|++|+.+. |.|.++.+.|.+||.++
T Consensus       159 C~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g~~~~-~~g~~~~~~l~~~l~~~  235 (241)
T 3idv_A          159 CGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYPTLKIFRKGRPYD-YNGPREKYGIVDYMIEQ  235 (241)
T ss_dssp             CTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSSEEEEEETTEEEE-CCSCCSHHHHHHHHHHH
T ss_pred             CHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccCEEEEEECCeEEE-ecCCCCHHHHHHHHHhh
Confidence            9999999999999997755444569999999999  89999999999999999999998765 99999999999999988


Q ss_pred             ccc
Q psy14086        317 KVE  319 (324)
Q Consensus       317 ~~~  319 (324)
                      ++.
T Consensus       236 ~~~  238 (241)
T 3idv_A          236 SGA  238 (241)
T ss_dssp             TTC
T ss_pred             hCC
Confidence            754

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=4.3e-34  Score=261.92  Aligned_cols=299  Identities=24%  Similarity=0.436  Sum_probs=231.8

Q ss_pred             ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCC-----------------
Q psy14086          9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPK-----------------   71 (324)
Q Consensus         9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~-----------------   71 (324)
                      .|.|+.|||+++++||++|+|+++||+++|++|.  ...+|.|.++.++|++|+.+++++...                 
T Consensus        53 ~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~--~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  130 (481)
T 3f8u_A           53 IVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE--EAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDA  130 (481)
T ss_dssp             TCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE--EEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSC
T ss_pred             ceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc--eeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCc
Confidence            3899999999999999999999999999999653  467899999999999999999876321                 


Q ss_pred             ------------------------------------------CCCCCC----C--------C------------------
Q psy14086         72 ------------------------------------------EPSDKP----I--------V------------------   79 (324)
Q Consensus        72 ------------------------------------------~~~~~~----~--------~------------------   79 (324)
                                                                .....+    .        .                  
T Consensus       131 ~vv~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~v~~~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~  210 (481)
T 3f8u_A          131 SIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKK  210 (481)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHCSSSEEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHH
T ss_pred             EEEEEECCCccchHHHHHHHHHHhccCceEEEECCHHHHHHhCCCCCcEEEEecccccCccCCcccccCCCCCCHHHHHH
Confidence                                                      000000    0        0                  


Q ss_pred             ------CCCceEcChhhHHHHhcCCCEEEEEeCCC-C---HhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhh
Q psy14086         80 ------NEGLVELTEESFEKYVSLGNHFVKFYAPW-C---GHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQS  148 (324)
Q Consensus        80 ------~~~~~~l~~~~f~~~~~~~~~~v~f~~~~-c---~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~  148 (324)
                            ...+.++|.+++..+.. .+.++.|+... .   ..+..+...+.++|++++++ ..+.|+.+|+.....+++.
T Consensus       211 fi~~~~~p~v~e~t~~n~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~  289 (481)
T 3f8u_A          211 FIQENIFGICPHMTEDNKDLIQG-KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSD  289 (481)
T ss_dssp             HHHHHTTTTSCEECTTTHHHHTT-SSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGG
T ss_pred             HHHHhCCCCccccChhHHHHhcC-CCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHH
Confidence                  01134555556555543 44555555432 2   12233577899999999882 2399999999999999999


Q ss_pred             CCcc----ccceEEEEeCCeEeeeecCCCCHH--HHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccc
Q psy14086        149 FDIK----SYPTLLWIESGKKLDKFQGSRTLE--TLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDV  222 (324)
Q Consensus       149 ~~i~----~~P~~~~~~~g~~~~~~~g~~~~~--~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  222 (324)
                      ||+.    ..|.++++..+.....+.+..+.+  .|.+|+.+++.+.........    ..+......+..+++++|++.
T Consensus       290 ~gl~~~~~~~P~~~i~~~~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~s~----~~p~~~~~~v~~~~~~~~~~~  365 (481)
T 3f8u_A          290 FGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSE----PIPESNDGPVKVVVAENFDEI  365 (481)
T ss_dssp             GTCCCCTTCSCEEEEECSSSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCCCCCC----CCCSCCCSSSEEECTTTHHHH
T ss_pred             cCCCcccCCCcEEEEEcCCCcccCCCcccCccHHHHHHHHHHHhcCCcccccccC----CCCCCCCCCeEEecccCHHHH
Confidence            9998    589999987543344566888888  999999999998865554322    122234567999999999988


Q ss_pred             ccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee--ee
Q psy14086        223 IKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR--TA  298 (324)
Q Consensus       223 ~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~--~~  298 (324)
                      +.+  ++++|.||++||++|+.+.|.|++++.+ +....++.++.+|++.  + +++..|+|.++||+++|++|+.  +.
T Consensus       366 ~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~-~~~~~~v~~~~id~~~--~-~~~~~~~v~~~Pt~~~~~~~~~~~~~  441 (481)
T 3f8u_A          366 VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEK-LSKDPNIVIAKMDATA--N-DVPSPYEVRGFPTIYFSPANKKLNPK  441 (481)
T ss_dssp             HTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHH-TTTCSSEEEEEEETTS--S-CCCTTCCCCSSSEEEEECTTCTTSCE
T ss_pred             hhcCCCcEEEEEecCcChhHHHhhHHHHHHHHH-hccCCCEEEEEEECCc--h-hhHhhCCCcccCEEEEEeCCCeEeee
Confidence            854  5899999999999999999999999955 5554579999999998  5 7889999999999999998865  67


Q ss_pred             eecCCCCHHHHHHHHHhhcc
Q psy14086        299 EYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       299 ~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .|.|.++.+.|.+||.++..
T Consensus       442 ~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          442 KYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             ECCSCCSHHHHHHHHHHHCS
T ss_pred             EeCCCCCHHHHHHHHHHhcC
Confidence            89999999999999999865

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=1.6e-33  Score=259.54  Aligned_cols=300  Identities=24%  Similarity=0.464  Sum_probs=226.8

Q ss_pred             ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCC-------CC----
Q psy14086          9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSD-------KP----   77 (324)
Q Consensus         9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~-------~~----   77 (324)
                      .|.|++|||++++.+|++|+|+++||+++|++|.......|.|.++.++|++|+.+++++.......       ..    
T Consensus        64 ~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~  143 (504)
T 2b5e_A           64 NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTP  143 (504)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSCSEEECSCHHHHHHHSCCSSC
T ss_pred             CeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCccccceeecCCCCHHHHHHHHHHhcCCcceeHHHHHHHHhcCCCceE
Confidence            5999999999999999999999999999999655111678999999999999999988652111000       00    


Q ss_pred             C-------------------------------------------------------C-------------------CCCc
Q psy14086         78 I-------------------------------------------------------V-------------------NEGL   83 (324)
Q Consensus        78 ~-------------------------------------------------------~-------------------~~~~   83 (324)
                      .                                                       .                   ...+
T Consensus       144 ~v~~f~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~i~l~~~~~~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v  223 (504)
T 2b5e_A          144 VIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYF  223 (504)
T ss_dssp             EEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEECTTSCCEEEEEETTEEEEEEECCSCHHHHTSHHHHHHHHHHHSSCSS
T ss_pred             EEEEeCCCCchHHHHHHHHHHHhhcCcEEEEEHHHHHhcCCeEEecCCCCcccccCCcccccCCHHHHHHHHHhcccCCc
Confidence            0                                                       0                   0012


Q ss_pred             eEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc-cccceEEEEe
Q psy14086         84 VELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI-KSYPTLLWIE  161 (324)
Q Consensus        84 ~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i-~~~P~~~~~~  161 (324)
                      ..+|.+++..+...+ +++++|+...... ..+...|+++|+++++  ++.|+.+|+.....+++.||+ ..+|++++++
T Consensus       224 ~~~t~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~a~~~~~--~i~F~~id~~~~~~~~~~~gl~~~~P~v~i~~  300 (504)
T 2b5e_A          224 GEIDGSVFAQYVESGLPLGYLFYNDEEEL-EEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD  300 (504)
T ss_dssp             CBCCHHHHHHHHHTTSCEEEEEESSHHHH-HHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             ccCCHhHHHHHhcCCCcEEEEEecCcccH-HHHHHHHHHHHHhcCC--eeEEEEEehhhhHHHHHHcCCcccCCEEEEEe
Confidence            334445555555444 3455565543333 6788999999999998  899999999999999999999 3589999998


Q ss_pred             CC-eEeeeec--CC-----------CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc--C
Q psy14086        162 SG-KKLDKFQ--GS-----------RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK--S  225 (324)
Q Consensus       162 ~g-~~~~~~~--g~-----------~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~  225 (324)
                      .. .....+.  +.           .+.+.|.+|+.+++.+........    +..+......|..+++++|++.+.  +
T Consensus       301 ~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~~~s----~~~p~~~~~~v~~l~~~~f~~~v~~~~  376 (504)
T 2b5e_A          301 MTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKS----QEIFENQDSSVFQLVGKNHDEIVNDPK  376 (504)
T ss_dssp             TTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCCCCC----CCCCCCCSCSEEEECTTTHHHHHHCTT
T ss_pred             CCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChhhhc----CCCCccccccceecccccHHHhhccCC
Confidence            63 2222233  44           789999999999998875433211    112223456799999999998874  4


Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee--eeeecCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR--TAEYNGS  303 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~--~~~~~g~  303 (324)
                      ++++|.||++||++|+.+.|.|++++.++.....++.++.+|++.  +.. .. ++|+++||+++|++|+.  ...|.|.
T Consensus       377 k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~--~~~-~~-~~v~~~Pt~~~~~~G~~~~~~~~~G~  452 (504)
T 2b5e_A          377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--NDV-RG-VVIEGYPTIVLYPGGKKSESVVYQGS  452 (504)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG--CCC-SS-CCCSSSSEEEEECCTTSCCCCBCCSC
T ss_pred             CCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc--ccc-cc-CCceecCeEEEEeCCceecceEecCC
Confidence            689999999999999999999999996643133469999999987  443 34 99999999999999876  6789999


Q ss_pred             CCHHHHHHHHHhhccc
Q psy14086        304 RDLEELYQFILKHKVE  319 (324)
Q Consensus       304 ~~~~~l~~fi~~~~~~  319 (324)
                      ++.+.|.+||.+++..
T Consensus       453 ~~~~~l~~~i~~~~~~  468 (504)
T 2b5e_A          453 RSLDSLFDFIKENGHF  468 (504)
T ss_dssp             CCHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHhcCCC
Confidence            9999999999988653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=100.00  E-value=5.3e-33  Score=229.67  Aligned_cols=206  Identities=16%  Similarity=0.262  Sum_probs=171.4

Q ss_pred             hhhHHHHh----cCCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEEE
Q psy14086         88 EESFEKYV----SLGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        88 ~~~f~~~~----~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~  160 (324)
                      .+.+.+.+    +...+++.||++ ||++|+.+.|.|+++++. .+  ++.|+.+|++.  ++.++++|||+++|++++|
T Consensus         9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~--~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (226)
T 1a8l_A            9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD--KLSYEIVDFDTPEGKELAKRYRIDRAPATTIT   85 (226)
T ss_dssp             HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC--ceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence            34455555    223457999999 999999999999999965 33  79999999998  9999999999999999999


Q ss_pred             eCCeEe-eeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC-CcE-EEEEeCCCC
Q psy14086        161 ESGKKL-DKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS-GTV-FIKFFAPWC  237 (324)
Q Consensus       161 ~~g~~~-~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~-~v~f~~~~c  237 (324)
                      ++|+.. .+|.|..+.+.+.+|+...+...                   ..+..+++++++.+... +++ +|.||++||
T Consensus        86 ~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC  146 (226)
T 1a8l_A           86 QDGKDFGVRYFGLPAGHEFAAFLEDIVDVS-------------------REETNLMDETKQAIRNIDQDVRILVFVTPTC  146 (226)
T ss_dssp             ETTBCCSEEEESCCCTTHHHHHHHHHHHHH-------------------HTCCCCCHHHHHHHTTCCSCEEEEEEECSSC
T ss_pred             cCCceeeEEEeccCcHHHHHHHHHHHHhhc-------------------CCCCCCCHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            988764 67999999999999999876421                   23445677777776533 466 999999999


Q ss_pred             hhhhhhhHhHHHHHHHhhc-CCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        238 GHCKRLAPTWEELGTKLLD-NKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       238 ~~C~~~~~~~~~~a~~~~~-~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ++|+.+.|.|++++.++.. ...++.++.+|++.  +++++++|+|.++||+++|++|+....+.|..+.+.|.+||.+.
T Consensus       147 ~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          147 PYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE--YPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG--CHHHHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhcccccCCcEEEEEEEccc--CHHHHHhCCCcccCeEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence            9999999999999966431 11269999999998  89999999999999999999998888899999999999999886


Q ss_pred             c
Q psy14086        317 K  317 (324)
Q Consensus       317 ~  317 (324)
                      +
T Consensus       225 l  225 (226)
T 1a8l_A          225 L  225 (226)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.98  E-value=2.4e-30  Score=227.40  Aligned_cols=261  Identities=15%  Similarity=0.145  Sum_probs=217.9

Q ss_pred             ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC-
Q psy14086          9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT-   87 (324)
Q Consensus         9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-   87 (324)
                      .|.+++|||++++++|++|+|+++||+++|++|.   ..+|.|.++.++|++|+.+++++             .+..++ 
T Consensus        67 ~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g~---~~~~~G~~~~~~l~~~i~~~~~~-------------~~~~l~~  130 (350)
T 1sji_A           67 DIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR---TIEFDGEFAADVLVEFLLDLIED-------------PVEIINS  130 (350)
T ss_dssp             SEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTE---EEEECSCCCHHHHHHHHHTTSSC-------------SEEECCS
T ss_pred             CcEEEEEeCCCCHHHHHhcCCCccceEEEEECCc---EEEecCCCCHHHHHHHHHHhcCC-------------cceeccc
Confidence            6999999999999999999999999999998654   67899999999999999999876             677784 


Q ss_pred             hhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC-Ce
Q psy14086         88 EESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES-GK  164 (324)
Q Consensus        88 ~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-g~  164 (324)
                      .+++++++.  ++.++|.|++++|..   ..+.|.++|..+++  .+.|+.++   +..++++++++ +|++++|++ ++
T Consensus       131 ~~~~~~~~~~~~~~~vv~ff~~~~~~---~~~~~~~~A~~~~~--~~~f~~~~---~~~~~~~~~v~-~p~i~~~~~~~~  201 (350)
T 1sji_A          131 KLEVQAFERIEDQIKLIGFFKSEESE---YYKAFEEAAEHFQP--YIKFFATF---DKGVAKKLSLK-MNEVDFYEPFMD  201 (350)
T ss_dssp             HHHHHHHHHCCSSCEEEEECSCTTSH---HHHHHHHHHHHTTT--TSEEEEEC---CHHHHHHHTCC-TTCEEEECTTCS
T ss_pred             hHHHHHHhccCCCcEEEEEECCCCcH---HHHHHHHHHHhhcc--CcEEEEEC---CHHHHHHcCCC-CCcEEEEeCCCC
Confidence            678888875  456789999998654   56899999999987  78998764   45799999999 999999987 44


Q ss_pred             EeeeecCC-CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC---CcEEEEEeCCCChhh
Q psy14086        165 KLDKFQGS-RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS---GTVFIKFFAPWCGHC  240 (324)
Q Consensus       165 ~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C  240 (324)
                      ....|.|. ++.++|.+||.....                     +.+..++.+++.+++.+   +..++.|+.++|+.|
T Consensus       202 ~~~~y~g~~~~~~~l~~fi~~~~~---------------------p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~  260 (350)
T 1sji_A          202 EPIAIPDKPYTEEELVEFVKEHQR---------------------PTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDG  260 (350)
T ss_dssp             SCEECSSSSCCHHHHHHHHHHHCC---------------------CSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHH
T ss_pred             CceecCCCCCCHHHHHHHHHHcCc---------------------cchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccH
Confidence            55679997 999999999998765                     56999999999888764   346677999999999


Q ss_pred             hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh----hhcCCC-ccceEEEEec--Ceeeee-ec---CCCCHHHH
Q psy14086        241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC----NQEGVD-GFPSIYVYKN--GVRTAE-YN---GSRDLEEL  309 (324)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~i~-~~P~l~~~~~--g~~~~~-~~---g~~~~~~l  309 (324)
                      ..+.+.++++|.++. ...++.|+++|++.  .+.++    +.+|++ ++|+++++..  +.++.. +.   |..+.+.|
T Consensus       261 ~~~~~~~~~vA~~~~-~~~~~~f~~id~~~--~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i  337 (350)
T 1sji_A          261 YEFLEILKQVARDNT-DNPDLSIVWIDPDD--FPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEEL  337 (350)
T ss_dssp             HHHHHHHHHHHHHGG-GCSSCCEEEECGGG--CHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCceEEEEECchh--hHHHHHHHHhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHH
Confidence            999999999997744 22368999999987  77766    789998 5899999964  334432 33   47899999


Q ss_pred             HHHHHhhcc
Q psy14086        310 YQFILKHKV  318 (324)
Q Consensus       310 ~~fi~~~~~  318 (324)
                      .+||++.+.
T Consensus       338 ~~F~~d~~~  346 (350)
T 1sji_A          338 EDWIEDVLS  346 (350)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999865

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.98  E-value=1.1e-31  Score=222.10  Aligned_cols=195  Identities=14%  Similarity=0.193  Sum_probs=165.7

Q ss_pred             CCCEEEEEe-----CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecC
Q psy14086         97 LGNHFVKFY-----APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQG  171 (324)
Q Consensus        97 ~~~~~v~f~-----~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g  171 (324)
                      .++++|.||     +|||++|+.+.|.|.+++..+.+.+++.|+.+||+.++.+|++|||+++|++++|++|....+|.|
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G   99 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIG   99 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEES
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecC
Confidence            346655555     899999999999999999888332389999999999999999999999999999987777778999


Q ss_pred             CCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC-CcE-EEEEeCCCChhhhhhhHhHHH
Q psy14086        172 SRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS-GTV-FIKFFAPWCGHCKRLAPTWEE  249 (324)
Q Consensus       172 ~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~-~v~f~~~~c~~C~~~~~~~~~  249 (324)
                      ..+.+++..|+...+...                   ..+..+++++|+.+... +++ ++.||++||++|+.+.|.+++
T Consensus       100 ~~~~~~l~~~~~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~  160 (229)
T 2ywm_A          100 LPAGLEFTTLINGIFHVS-------------------QRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWD  160 (229)
T ss_dssp             CCCTTHHHHHHHHHHHHH-------------------TTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhcc-------------------CCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHH
Confidence            999999999999876421                   33566778888877643 455 888999999999999999999


Q ss_pred             HHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        250 LGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       250 ~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++.+ + .  ++.++.+|++.  +++++++|+|.++|++++  +|+ +..+.|..+.+.|.+||.+.++.
T Consensus       161 ~~~~-~-~--~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~--~G~-~~~~~G~~~~~~l~~~l~~~~~~  221 (229)
T 2ywm_A          161 FALA-N-D--YITSKVIDASE--NQDLAEQFQVVGVPKIVI--NKG-VAEFVGAQPENAFLGYIMAVYEK  221 (229)
T ss_dssp             HHHH-C-T--TEEEEEEEGGG--CHHHHHHTTCCSSSEEEE--GGG-TEEEESCCCHHHHHHHHHHHHHH
T ss_pred             HHHH-C-C--CeEEEEEECCC--CHHHHHHcCCcccCEEEE--CCE-EEEeeCCCCHHHHHHHHHHHhhh
Confidence            9965 3 2  69999999998  899999999999999988  777 55689999999999999987653

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.97  E-value=4.6e-30  Score=226.50  Aligned_cols=262  Identities=14%  Similarity=0.174  Sum_probs=215.5

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      ..|.|++|||+++++||++|+|++|||+++|++|.   ...|.|.++.++|++|+.+++++             .+..++
T Consensus        68 ~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~---~~~y~G~~~~~~i~~~i~~~~~~-------------~v~~i~  131 (367)
T 3us3_A           68 KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDE---VIEYDGEFSADTLVEFLLDVLED-------------PVELIE  131 (367)
T ss_dssp             TTEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTE---EEECCSCCSHHHHHHHHHHHHSC-------------SEEECC
T ss_pred             CCceEEEEeCcccHHHHHHcCCCcCceEEEEECCc---EEEeCCCCCHHHHHHHHHHhcCC-------------CcEEcC
Confidence            46999999999999999999999999999999654   57999999999999999999976             677885


Q ss_pred             -hhhHHHHhc-C-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-
Q psy14086         88 -EESFEKYVS-L-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-  163 (324)
Q Consensus        88 -~~~f~~~~~-~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-  163 (324)
                       .+++++++. . ..++|.|+++||..   ..+.|.++|..+++  .+.|+.+.   +..++++|+++. |++++|+++ 
T Consensus       132 ~~~~~~~~~~~~~~~~vv~ff~~~~~~---~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~v~~-p~i~lf~~~~  202 (367)
T 3us3_A          132 GERELQAFENIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHP--YIPFFATF---DSKVAKKLTLKL-NEIDFYEAFM  202 (367)
T ss_dssp             SHHHHHHHHHCCSSCEEEEECSCTTCH---HHHHHHHHHHHHTT--TSCEEEEC---CHHHHHHHTCCT-TCEEEECTTC
T ss_pred             CHHHHHHHhccCCCcEEEEEECCCCch---HHHHHHHHHHhhcC--CcEEEEEC---CHHHHHHcCCCC-CeEEEEcCCC
Confidence             678888886 3 56899999998664   67899999999987  78898765   457899999985 999999883 


Q ss_pred             eEeeeecCC-CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC---CcEEEEEeCCCChh
Q psy14086        164 KKLDKFQGS-RTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS---GTVFIKFFAPWCGH  239 (324)
Q Consensus       164 ~~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~  239 (324)
                      +....|.|. ++.++|.+||.....                     +.|.+++.+++.++..+   ++.++.|+.++|..
T Consensus       203 ~~~~~y~g~~~~~~~l~~fi~~~~~---------------------p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~  261 (367)
T 3us3_A          203 EEPVTIPDKPNSEEEIVNFVEEHRR---------------------STLRKLKPESMYETWEDDMDGIHIVAFAEEADPD  261 (367)
T ss_dssp             SSCEECSSSSCCHHHHHHHHHHTCS---------------------CSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHH
T ss_pred             CCCeecCCCCCCHHHHHHHHHHcCc---------------------cceeecChhhHHHHHhhccCCcEEEEEEcCCChh
Confidence            445568885 999999999998765                     56999999998776643   36778899999999


Q ss_pred             hhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCC-ccceEEEEecCe---eeeeecC---CCCHHH
Q psy14086        240 CKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVD-GFPSIYVYKNGV---RTAEYNG---SRDLEE  308 (324)
Q Consensus       240 C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~-~~P~l~~~~~g~---~~~~~~g---~~~~~~  308 (324)
                      |..+.+.++++|++ +++..++.|+++|+..  .+..    .+.||++ ++|+++++...+   .+..+.+   ..+.+.
T Consensus       262 ~~~~~~~l~~vA~~-~~~~~ki~F~~id~~~--~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~  338 (367)
T 3us3_A          262 GYEFLEILKSVAQD-NTDNPDLSIIWIDPDD--FPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEE  338 (367)
T ss_dssp             HHHHHHHHHHHHHH-TTTCTTCCEEEECGGG--CTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHH
T ss_pred             HHHHHHHHHHHHHH-cCCCCceEEEEECCcc--chhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHH
Confidence            99999999999966 4443359999999987  5543    3458887 899999997432   2333554   689999


Q ss_pred             HHHHHHhhcc
Q psy14086        309 LYQFILKHKV  318 (324)
Q Consensus       309 l~~fi~~~~~  318 (324)
                      |.+|+++.+.
T Consensus       339 i~~F~~~~~~  348 (367)
T 3us3_A          339 LEDWLEDVLE  348 (367)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.96  E-value=5.4e-29  Score=206.99  Aligned_cols=203  Identities=14%  Similarity=0.202  Sum_probs=160.8

Q ss_pred             hhHHHHhcC--CCEEEEEeCCC--CHhHhhHHHHHHHHHHhc---CCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         89 ESFEKYVSL--GNHFVKFYAPW--CGHCQSLAPVWQELASHF---KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        89 ~~f~~~~~~--~~~~v~f~~~~--c~~c~~~~~~~~~la~~~---~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      +.+.+++.+  ++++|.||++|  |++|+.+.+.+.++++.+   +++..+.|+.+|+++++.++++|||+++|+++++ 
T Consensus        15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-   93 (243)
T 2hls_A           15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-   93 (243)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-
Confidence            445555533  58899999999  999999999999999884   3311199999999999999999999999999999 


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc--cCCcEEEEEeCCCChh
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGH  239 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~  239 (324)
                      +|  ..+|.|..+.+.+..|+...+...                   .....++.+.++.+.  .++.+++.||++||++
T Consensus        94 ~g--~~~~~G~~~~~~l~~fv~~~l~~~-------------------~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~  152 (243)
T 2hls_A           94 GG--EVRWTGIPAGEEIRALVEVIMRLS-------------------EDESGLEDATKEALKSLKGRVHIETIITPSCPY  152 (243)
T ss_dssp             TT--TEEEESCCCTTHHHHHHHHHHHHH-------------------TTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSS
T ss_pred             CC--ceeEcCCCcHHHHHHHHHHHHhcc-------------------CCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCC
Confidence            55  667999888889999998876421                   001122333333332  2346789999999999


Q ss_pred             hhhhhHhHHHHHHHhhc-CCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        240 CKRLAPTWEELGTKLLD-NKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       240 C~~~~~~~~~~a~~~~~-~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+.+.|.|++++.++.. ...++.++.+|++.  +++++++|+|.++||+++  +|+.  .|.|.++.++|.+||.+.++
T Consensus       153 C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~V~~vPt~~i--~G~~--~~~G~~~~~~l~~~l~~~~~  226 (243)
T 2hls_A          153 CPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE--NPDIADKYGVMSVPSIAI--NGYL--VFVGVPYEEDFLDYVKSAAE  226 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT--CHHHHHHTTCCSSSEEEE--TTEE--EEESCCCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcccccCCcEEEEEEECcc--CHHHHHHcCCeeeCeEEE--CCEE--EEeCCCCHHHHHHHHHHHhh
Confidence            99999999999966321 11369999999998  899999999999999987  7764  38999999999999998876


Q ss_pred             c
Q psy14086        319 E  319 (324)
Q Consensus       319 ~  319 (324)
                      .
T Consensus       227 ~  227 (243)
T 2hls_A          227 G  227 (243)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.96  E-value=9.1e-28  Score=210.93  Aligned_cols=202  Identities=14%  Similarity=0.227  Sum_probs=171.4

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHH-------HHHHHHhcCCCCCeEEEEeccccchhhhhhCCc
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPV-------WQELASHFKTEEDVSIAKIDCTQHRSICQSFDI  151 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~-------~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i  151 (324)
                      .+.+..|+.++|++.+.+ ++++|.||+|||+ |+.+.|.       |++++..+++. ++.|+.|||+.++.+|++|+|
T Consensus        10 ~~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~Vd~~~~~~l~~~~~v   87 (350)
T 1sji_A           10 KDRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMVDAKKEAKLAKKLGF   87 (350)
T ss_dssp             CCCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEEETTTTHHHHHHHTC
T ss_pred             CCccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc-CcEEEEEeCCCCHHHHHhcCC
Confidence            356899999999998855 5789999999999 9999888       99999999763 599999999999999999999


Q ss_pred             cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEec-ccccccccc--CCcE
Q psy14086        152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLT-SENFNDVIK--SGTV  228 (324)
Q Consensus       152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~--~~~~  228 (324)
                      +++||+++|++|+ ...|.|.++.+.|.+|+.+.+.                     +.+..++ .+++++++.  ++.+
T Consensus        88 ~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~~  145 (350)
T 1sji_A           88 DEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIE---------------------DPVEIINSKLEVQAFERIEDQIK  145 (350)
T ss_dssp             CSTTEEEEEETTE-EEEECSCCCHHHHHHHHHTTSS---------------------CSEEECCSHHHHHHHHHCCSSCE
T ss_pred             CccceEEEEECCc-EEEecCCCCHHHHHHHHHHhcC---------------------CcceeccchHHHHHHhccCCCcE
Confidence            9999999999998 5679999999999999998876                     4577775 466888775  4578


Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec-CeeeeeecCC-CCH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN-GVRTAEYNGS-RDL  306 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~-g~~~~~~~g~-~~~  306 (324)
                      +|.|+++||..   ..+.|.++|.. ++.  .+.|+.++     +++++++++++ +|++++|+. ++....|.|. ++.
T Consensus       146 vv~ff~~~~~~---~~~~~~~~A~~-~~~--~~~f~~~~-----~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~  213 (350)
T 1sji_A          146 LIGFFKSEESE---YYKAFEEAAEH-FQP--YIKFFATF-----DKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTE  213 (350)
T ss_dssp             EEEECSCTTSH---HHHHHHHHHHH-TTT--TSEEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCH
T ss_pred             EEEEECCCCcH---HHHHHHHHHHh-hcc--CcEEEEEC-----CHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCH
Confidence            99999998654   56889999955 544  68888874     57899999999 999999986 3555679997 899


Q ss_pred             HHHHHHHHhhc
Q psy14086        307 EELYQFILKHK  317 (324)
Q Consensus       307 ~~l~~fi~~~~  317 (324)
                      ++|.+||.++.
T Consensus       214 ~~l~~fi~~~~  224 (350)
T 1sji_A          214 EELVEFVKEHQ  224 (350)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcC
Confidence            99999998763

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.96  E-value=1.2e-27  Score=199.37  Aligned_cols=170  Identities=31%  Similarity=0.621  Sum_probs=150.4

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELT   87 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (324)
                      +.+.++.|||++++++|++|+|+++||+++|++|+   .+.|.|.++.++|.+|+.+...+.      .......+..++
T Consensus        66 ~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~---~~~~~g~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~  136 (241)
T 3idv_A           66 PPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ---AVDYEGSRTQEEIVAKVREVSQPD------WTPPPEVTLVLT  136 (241)
T ss_dssp             SCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE---EEECCSCSCHHHHHHHHHHHHSTT------CCCCCCSSEECC
T ss_pred             CceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCC---cccccCcccHHHHHHHHhhccCcc------cccccccceecc
Confidence            45999999999999999999999999999998655   557999999999999999988651      122344688899


Q ss_pred             hhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         88 EESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        88 ~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      .++|++.+.. ++++|.||++||++|+.+.|.|.+++..+++. ..+.|+.+|++.++.++++|+|+++|++++|++|+.
T Consensus       137 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~  216 (241)
T 3idv_A          137 KENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRP  216 (241)
T ss_dssp             TTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             HHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeE
Confidence            9999998844 56899999999999999999999999999762 349999999999999999999999999999999987


Q ss_pred             eeeecCCCCHHHHHHHHHhhhC
Q psy14086        166 LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       166 ~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +. |.|.++.++|.+||.+.++
T Consensus       217 ~~-~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          217 YD-YNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             EE-CCSCCSHHHHHHHHHHHTT
T ss_pred             EE-ecCCCCHHHHHHHHHhhhC
Confidence            65 9999999999999999876

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.96  E-value=2.9e-27  Score=208.59  Aligned_cols=204  Identities=10%  Similarity=0.180  Sum_probs=170.0

Q ss_pred             CCCCceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHH------HHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc
Q psy14086         79 VNEGLVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLA------PVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI  151 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~------~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i  151 (324)
                      ..+.+..||.++|++.+. .+.++|.||||||++|....      |.|+.++..+.+. .+.|++|||+.++.+|++|+|
T Consensus        11 ~~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~-~v~~~~Vd~~~~~~l~~~~~V   89 (367)
T 3us3_A           11 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDAAVAKKLGL   89 (367)
T ss_dssp             CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTTHHHHHHHTC
T ss_pred             CCCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC-CceEEEEeCcccHHHHHHcCC
Confidence            345799999999999984 45689999999999974332      6899999998752 599999999999999999999


Q ss_pred             cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecc-cccccccc-C-CcE
Q psy14086        152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTS-ENFNDVIK-S-GTV  228 (324)
Q Consensus       152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~-~-~~~  228 (324)
                      +++||+++|++|+.. .|.|.++.+.|.+||.+.++                     +.+..++. +++++++. + +.+
T Consensus        90 ~~~PTl~~f~~G~~~-~y~G~~~~~~i~~~i~~~~~---------------------~~v~~i~~~~~~~~~~~~~~~~~  147 (367)
T 3us3_A           90 TEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE---------------------DPVELIEGERELQAFENIEDEIK  147 (367)
T ss_dssp             CSTTEEEEEETTEEE-ECCSCCSHHHHHHHHHHHHS---------------------CSEEECCSHHHHHHHHHCCSSCE
T ss_pred             CcCceEEEEECCcEE-EeCCCCCHHHHHHHHHHhcC---------------------CCcEEcCCHHHHHHHhccCCCcE
Confidence            999999999999764 79999999999999999987                     55778864 66888886 3 579


Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC-eeeeeecCC-CCH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG-VRTAEYNGS-RDL  306 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g-~~~~~~~g~-~~~  306 (324)
                      +|.|+.+||+   ...+.|.++|.. ++.  .+.|+.++     +.+++++++++. |+|++|+.+ +....|.|. ++.
T Consensus       148 vv~ff~~~~~---~~~~~f~~~A~~-~~~--~~~F~~~~-----~~~~~~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~~  215 (367)
T 3us3_A          148 LIGYFKNKDS---EHYKAFKEAAEE-FHP--YIPFFATF-----DSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPNSE  215 (367)
T ss_dssp             EEEECSCTTC---HHHHHHHHHHHH-HTT--TSCEEEEC-----CHHHHHHHTCCT-TCEEEECTTCSSCEECSSSSCCH
T ss_pred             EEEEECCCCc---hHHHHHHHHHHh-hcC--CcEEEEEC-----CHHHHHHcCCCC-CeEEEEcCCCCCCeecCCCCCCH
Confidence            9999999876   467889999965 544  57888765     578899999984 999999874 445678995 899


Q ss_pred             HHHHHHHHhhc
Q psy14086        307 EELYQFILKHK  317 (324)
Q Consensus       307 ~~l~~fi~~~~  317 (324)
                      +.|.+||..+.
T Consensus       216 ~~l~~fi~~~~  226 (367)
T 3us3_A          216 EEIVNFVEEHR  226 (367)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcC
Confidence            99999998764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.95  E-value=6.2e-26  Score=201.45  Aligned_cols=262  Identities=15%  Similarity=0.219  Sum_probs=190.2

Q ss_pred             CCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEc
Q psy14086          7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVEL   86 (324)
Q Consensus         7 ~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (324)
                      ...|.+++|||++++++|++|+|+++||+++|++|. .....|.|.++.++|++|+.+++++             .+..+
T Consensus        58 ~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G~-~~~~~~~G~~~~~~l~~~i~~~~~~-------------~v~~l  123 (382)
T 2r2j_A           58 ENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGM-MMKREYRGQRSVKALADYIRQQKSD-------------PIQEI  123 (382)
T ss_dssp             -CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETTE-EEEEECCSCCSHHHHHHHHHHHHSC-------------CCEEC
T ss_pred             CCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCCc-EeeeeecCcchHHHHHHHHHHhccC-------------Cceec
Confidence            345999999999999999999999999999999655 2223699999999999999999976             56666


Q ss_pred             C-hhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC--
Q psy14086         87 T-EESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG--  163 (324)
Q Consensus        87 ~-~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g--  163 (324)
                      + .++++.+.....++|.|+++++.+   ..+.|.++|..+++  .+.|+....    .+++.+++++.| +++...+  
T Consensus       124 ~~~~~l~~l~~~~~~~v~ff~~~~~~---~~~~f~~~A~~~~~--~~~F~~~~~----~~~~~~~v~~~p-i~~~~~~~~  193 (382)
T 2r2j_A          124 RDLAEITTLDRSKRNIIGYFEQKDSD---NYRVFERVANILHD--DCAFLSAFG----DVSKPERYSGDN-IIYKPPGHS  193 (382)
T ss_dssp             ------------CCEEEEEESCSSSH---HHHHHHHHHHHHTT--TCEEEEEES----CC--------CE-EEEECSSSS
T ss_pred             CCHHHHHHhcCCCCEEEEEECCCCCh---hHHHHHHHHHHhhc--cceEEEEeh----hhHHhhCCCCCc-eEECCCCCC
Confidence            4 345766445567899999988765   35689999999988  688876654    367888999999 6666543  


Q ss_pred             eEeeeecCCC-CHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC-CcEEEEEeCCCCh-hh
Q psy14086        164 KKLDKFQGSR-TLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS-GTVFIKFFAPWCG-HC  240 (324)
Q Consensus       164 ~~~~~~~g~~-~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~-~C  240 (324)
                      .....|.|.+ +.++|.+||+....                     +.+..++.+++.+++.+ .++++.|+.++|. .|
T Consensus       194 ~~~~~y~g~~~~~~~l~~fi~~~~~---------------------p~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~  252 (382)
T 2r2j_A          194 APDMVYLGAMTNFDVTYNWIQDKCV---------------------PLVREITFENGEELTEEGLPFLILFHMKEDTESL  252 (382)
T ss_dssp             SCCEECCSCTTCHHHHHHHHHHHHS---------------------CSSEECCHHHHHHHHTTCCCEEEEEECTTCCHHH
T ss_pred             CcCcccCCCCCCHHHHHHHHHhccc---------------------CceEecChhhHHHHhcCCCcEEEEEecCCchHHH
Confidence            2345689998 99999999999876                     56899999998887754 4788999999874 34


Q ss_pred             hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecCeee--eeecCCCCHHHHHHHHHhh
Q psy14086        241 KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNGVRT--AEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g~~~--~~~~g~~~~~~l~~fi~~~  316 (324)
                      ..+...+.+++.+ +..  ++.|+++|++.  ...+.+.+|++  ++|+++++..++.+  ..+.|..+.+.|.+||.+.
T Consensus       253 ~~~~~~~~~~~~~-~~~--~i~f~~id~~~--~~~~~~~~gl~~~~~P~i~i~~~~~~y~~~~~~~~~~~~~i~~F~~d~  327 (382)
T 2r2j_A          253 EIFQNEVARQLIS-EKG--TINFLHADCDK--FRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDL  327 (382)
T ss_dssp             HHHHHHHHHHTGG-GTT--TSEEEEEETTT--THHHHHHTTCCGGGCSEEEEECSSCEEECCCSGGGGSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCC--eeEEEEEchHH--hHHHHHHcCCCccCCCEEEEEcchhcCCCCccccccCHHHHHHHHHHH
Confidence            4555566665534 333  79999999998  78888999997  68999988654432  1223445779999999987


Q ss_pred             cc
Q psy14086        317 KV  318 (324)
Q Consensus       317 ~~  318 (324)
                      +.
T Consensus       328 ~~  329 (382)
T 2r2j_A          328 HS  329 (382)
T ss_dssp             HH
T ss_pred             HC
Confidence            65

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.95  E-value=1.1e-26  Score=191.62  Aligned_cols=168  Identities=12%  Similarity=0.212  Sum_probs=145.5

Q ss_pred             CCceEEEEeeCcc--chhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCce
Q psy14086          7 DSRVTIGQVDCTV--EKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLV   84 (324)
Q Consensus         7 ~~~i~~~~vd~~~--~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (324)
                      .+.|.++.|||++  ++++|++|+|.++||+++|++|. ....+|.|.++.+.+.+|+......           .....
T Consensus        52 ~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~~G~~~~~~l~~~l~~~l~~-----------~~~~~  119 (226)
T 1a8l_A           52 TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGK-DFGVRYFGLPAGHEFAAFLEDIVDV-----------SREET  119 (226)
T ss_dssp             CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTB-CCSEEEESCCCTTHHHHHHHHHHHH-----------HHTCC
T ss_pred             CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCc-eeeEEEeccCcHHHHHHHHHHHHhh-----------cCCCC
Confidence            4679999999999  99999999999999999998654 3347899999999999999876531           01345


Q ss_pred             EcChhhHHHHh-cCCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCC--CCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         85 ELTEESFEKYV-SLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKT--EEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        85 ~l~~~~f~~~~-~~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      .++.++|+.+. ..+++ +|.||++||++|+.+.|.|++++..+.+  ..++.|+.+|++.+..++++|+|+++|+++++
T Consensus       120 ~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  199 (226)
T 1a8l_A          120 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ  199 (226)
T ss_dssp             CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEE
Confidence            68888998876 34566 9999999999999999999999999971  12799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++|+...++.|..+.++|.+||++.+
T Consensus       200 ~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          200 VNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            99988889999999999999998865

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-25  Score=190.51  Aligned_cols=208  Identities=21%  Similarity=0.471  Sum_probs=163.8

Q ss_pred             CCCCCceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccc
Q psy14086         78 IVNEGLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKS  153 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~  153 (324)
                      .....+.+|+.++|++.+.  +++++|.||++||++|+.+.|.|.+++..+.+  .+.|+.+||+  .+..+|++|+|++
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~--~~~~~~v~~d~~~~~~l~~~~~I~~   91 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG--VVQVAAVNCDLNKNKALCAKYDVNG   91 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTSTTTHHHHHHTTCCB
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC--CcEEEEEEccCccCHHHHHhCCCCc
Confidence            3456799999999999983  44789999999999999999999999999987  6888888887  6789999999999


Q ss_pred             cceEEEEeCCe-----------------EeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecc
Q psy14086        154 YPTLLWIESGK-----------------KLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTS  216 (324)
Q Consensus       154 ~P~~~~~~~g~-----------------~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  216 (324)
                      +|++++|++|+                 ....|.|.++.+.|.+|+.+.+.                     ..+..++.
T Consensus        92 ~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~---------------------~~v~~i~~  150 (298)
T 3ed3_A           92 FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR---------------------SYVKKFVR  150 (298)
T ss_dssp             SSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC---------------------CCEEECSC
T ss_pred             cceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc---------------------cccEEcCC
Confidence            99999999986                 35689999999999999999876                     45777754


Q ss_pred             -ccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhh--hhcC-----C----
Q psy14086        217 -ENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLC--NQEG-----V----  282 (324)
Q Consensus       217 -~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~--~~~~-----i----  282 (324)
                       +++++++..  .++++.|...     ....+.|..+|.+ +..  .+.|+.++...  ...+.  ++++     |    
T Consensus       151 ~~~l~~~l~~~~~~~vi~fs~~-----~~~~~~f~~~A~~-~~~--~~~F~~v~~~~--~a~~~~~~~~~~~~p~i~~~~  220 (298)
T 3ed3_A          151 IDTLGSLLRKSPKLSVVLFSKQ-----DKISPVYKSIALD-WLG--KFDFYSISNKK--LKQLTDMNPTYEKTPEIFKYL  220 (298)
T ss_dssp             GGGHHHHHTSCSSEEEEEEESS-----SSCCHHHHHHHHH-TBT--TEEEEEEEGGG--CCCCCTTCTTSTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEEEcCC-----CcchHHHHHHHHH-hhc--CcEEEEEcchH--hhhhhhhhhhcccCcchhhhh
Confidence             558888765  3455555322     3466899999965 555  69999998543  12111  2232     2    


Q ss_pred             ---------CccceEEEEec-CeeeeeecC-CCCHHHHHHHHHhhcc
Q psy14086        283 ---------DGFPSIYVYKN-GVRTAEYNG-SRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ---------~~~P~l~~~~~-g~~~~~~~g-~~~~~~l~~fi~~~~~  318 (324)
                               ...|+|++|+. ++....|.| ..+.++|.+||.+..+
T Consensus       221 ~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~  267 (298)
T 3ed3_A          221 QKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFS  267 (298)
T ss_dssp             HHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHT
T ss_pred             hcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcC
Confidence                     57999999975 456678996 5899999999996443

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.95  E-value=4.8e-26  Score=202.17  Aligned_cols=203  Identities=24%  Similarity=0.473  Sum_probs=149.2

Q ss_pred             CCceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC----CCCeEEEEeccccchhhhhhCCccccc
Q psy14086         81 EGLVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKT----EEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~----~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      +.+..|+.++|++.+. .++++|.||++||++|+.+.|.|++++..++.    .+++.|+.|||+.+..+|++|+|+++|
T Consensus         5 ~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~P   84 (382)
T 2r2j_A            5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP   84 (382)
T ss_dssp             ---CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEES
T ss_pred             CceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCC
Confidence            4688999999998874 45789999999999999999999999999853    236999999999999999999999999


Q ss_pred             eEEEEeCCeEee-eecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecc-ccccccccCCcEEEEEe
Q psy14086        156 TLLWIESGKKLD-KFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTS-ENFNDVIKSGTVFIKFF  233 (324)
Q Consensus       156 ~~~~~~~g~~~~-~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~v~f~  233 (324)
                      ++++|++|+... .|.|.++.+.|.+|+.+.+.                     +.+..++. ++++++..++.++|.|+
T Consensus        85 t~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~---------------------~~v~~l~~~~~l~~l~~~~~~~v~ff  143 (382)
T 2r2j_A           85 TLKLFRNGMMMKREYRGQRSVKALADYIRQQKS---------------------DPIQEIRDLAEITTLDRSKRNIIGYF  143 (382)
T ss_dssp             EEEEEETTEEEEEECCSCCSHHHHHHHHHHHHS---------------------CCCEEC------------CCEEEEEE
T ss_pred             EEEEEeCCcEeeeeecCcchHHHHHHHHHHhcc---------------------CCceecCCHHHHHHhcCCCCEEEEEE
Confidence            999999998766 49999999999999999987                     34556644 34666434457899999


Q ss_pred             CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC--eeeeeecCCC-CHHHHH
Q psy14086        234 APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSR-DLEELY  310 (324)
Q Consensus       234 ~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g--~~~~~~~g~~-~~~~l~  310 (324)
                      ++++.+   ..+.|.++|.. ++.  .+.|+....      ++.+.++++++| +++++.+  .....|.|.+ +.+.|.
T Consensus       144 ~~~~~~---~~~~f~~~A~~-~~~--~~~F~~~~~------~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~  210 (382)
T 2r2j_A          144 EQKDSD---NYRVFERVANI-LHD--DCAFLSAFG------DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTY  210 (382)
T ss_dssp             SCSSSH---HHHHHHHHHHH-HTT--TCEEEEEES------CC--------CE-EEEECSSSSSCCEECCSCTTCHHHHH
T ss_pred             CCCCCh---hHHHHHHHHHH-hhc--cceEEEEeh------hhHHhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHH
Confidence            887664   45678999955 544  467776653      345678999999 6665543  2346799998 899999


Q ss_pred             HHHHhhc
Q psy14086        311 QFILKHK  317 (324)
Q Consensus       311 ~fi~~~~  317 (324)
                      +||.++.
T Consensus       211 ~fi~~~~  217 (382)
T 2r2j_A          211 NWIQDKC  217 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9998763

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.94  E-value=1.8e-26  Score=190.76  Aligned_cols=162  Identities=15%  Similarity=0.233  Sum_probs=141.8

Q ss_pred             CCceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEc
Q psy14086          7 DSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVEL   86 (324)
Q Consensus         7 ~~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (324)
                      .+.|.+++|||+++++||++|+|+++||+++|++ + ....+|.|.++.+++.+|+......           ......+
T Consensus        57 ~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~-~-~~~~~~~G~~~~~~l~~~~~~~~~~-----------~~~~~~l  123 (229)
T 2ywm_A           57 QDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGD-K-DYGIRYIGLPAGLEFTTLINGIFHV-----------SQRKPQL  123 (229)
T ss_dssp             TTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESS-S-CCCEEEESCCCTTHHHHHHHHHHHH-----------HTTCCSC
T ss_pred             CCceEEEEecCcccHHHHHHcCCCcCcEEEEECC-C-cccceecCCccHHHHHHHHHHHHhc-----------cCCccCC
Confidence            4679999999999999999999999999999984 4 4578899999999999999886532           1146778


Q ss_pred             ChhhHHHHhc-CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe
Q psy14086         87 TEESFEKYVS-LGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        87 ~~~~f~~~~~-~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      ++++|+.... .+++ ++.||++||++|+.+.|.|++++..+.   ++.|+.+|++.++.++++|+|+++|++++  +|+
T Consensus       124 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~  198 (229)
T 2ywm_A          124 SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND---YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG  198 (229)
T ss_dssp             CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG
T ss_pred             CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC---CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE
Confidence            9999998873 3455 788999999999999999999999983   69999999999999999999999999988  676


Q ss_pred             EeeeecCCCCHHHHHHHHHhhhC
Q psy14086        165 KLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                       ..+|.|..+.++|.+||.+.++
T Consensus       199 -~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          199 -VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             -TEEEESCCCHHHHHHHHHHHHH
T ss_pred             -EEEeeCCCCHHHHHHHHHHHhh
Confidence             5679999999999999998775

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.94  E-value=2.7e-25  Score=203.60  Aligned_cols=201  Identities=27%  Similarity=0.545  Sum_probs=168.9

Q ss_pred             CceEcChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVELTEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+..||.++|++.+..    ++++|.||++||++|+.+.|.|.+++..+++  .+.|+.|||+.++.+|++|+|+++|++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Ptl   79 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVDCTANTNTCNKYGVSGYPTL   79 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCCEEEEETTTCHHHHHHTTCCEESEE
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC--ceEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            5789999999999844    5689999999999999999999999999988  699999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEec-cccccccccCC-cEEEEEeCC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLT-SENFNDVIKSG-TVFIKFFAP  235 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~-~~~v~f~~~  235 (324)
                      ++|++|+...+|.|.++.+.|.+|+.+.+.                     +.+..++ .+++++++... .++|.|+.+
T Consensus        80 ~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~---------------------~~~~~i~~~~~~~~~~~~~~~~vv~~~~~  138 (481)
T 3f8u_A           80 KIFRDGEEAGAYDGPRTADGIVSHLKKQAG---------------------PASVPLRTEEEFKKFISDKDASIVGFFDD  138 (481)
T ss_dssp             EEEETTEEEEECCSCSSHHHHHHHHHHHTS---------------------CSEEEECSHHHHHHHTTSSSCEEEEEESC
T ss_pred             EEEeCCceeeeecCccCHHHHHHHHHhhcc---------------------cCceecCCHHHHHHHHhcCCcEEEEEECC
Confidence            999999888899999999999999999987                     4577774 45688877654 678889988


Q ss_pred             CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe------c-Ceeeeeec-CCCCHH
Q psy14086        236 WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK------N-GVRTAEYN-GSRDLE  307 (324)
Q Consensus       236 ~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~------~-g~~~~~~~-g~~~~~  307 (324)
                      +|..   ....|.++|.. ++.  .+.|+.+.     +.+++++++++..| +++|+      . +.....|. |..+.+
T Consensus       139 ~~~~---~~~~f~~~a~~-~~~--~~~F~~~~-----~~~~~~~~~v~~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~  206 (481)
T 3f8u_A          139 SFSE---AHSEFLKAASN-LRD--NYRFAHTN-----VESLVNEYDDNGEG-IILFRPSHLTNKFEDKTVAYTEQKMTSG  206 (481)
T ss_dssp             TTCH---HHHHHHHHHHH-HTT--TSCEEEEC-----CHHHHHHHCSSSEE-EEEECCGGGCBTTBCSEEECCCSSCCHH
T ss_pred             Cccc---hHHHHHHHHHH-hcc--CceEEEEC-----CHHHHHHhCCCCCc-EEEEecccccCccCCcccccCCCCCCHH
Confidence            7664   56788889855 544  57788764     57889999998766 77777      2 23345788 778999


Q ss_pred             HHHHHHHhhc
Q psy14086        308 ELYQFILKHK  317 (324)
Q Consensus       308 ~l~~fi~~~~  317 (324)
                      .|.+||..+.
T Consensus       207 ~l~~fi~~~~  216 (481)
T 3f8u_A          207 KIKKFIQENI  216 (481)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.93  E-value=1.3e-24  Score=191.79  Aligned_cols=176  Identities=24%  Similarity=0.512  Sum_probs=145.8

Q ss_pred             CceEEEEeeCc--cchhhhccCCCcc--CCceEEEecCCcccccccC---CCCChHHHHHHHHhhhcCCCCC-----CCC
Q psy14086          8 SRVTIGQVDCT--VEKQLCADQEITG--YPTLKFFKKGSESEASKFR---GTRDLPTLTNFINEQISETPKE-----PSD   75 (324)
Q Consensus         8 ~~i~~~~vd~~--~~~~l~~~~~I~~--~Pti~~f~~~~~~~~~~y~---G~~~~~~i~~~~~~~~~~~~~~-----~~~   75 (324)
                      ..|.|+.|||+  +++.+|+.|||++  +|++++|..++  ....|.   |.++.++|.+|+.+.+.+....     ...
T Consensus       166 ~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~--~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p  243 (361)
T 3uem_A          166 GKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE--EMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELP  243 (361)
T ss_dssp             TTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC----CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCC
T ss_pred             CceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC--cccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence            46999999999  7899999999988  99999999644  345665   8899999999999987643211     111


Q ss_pred             CCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc
Q psy14086         76 KPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS  153 (324)
Q Consensus        76 ~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~  153 (324)
                      .......+..++.++|+..+  ..++++|.||++||++|+.+.|.|++++..+++...+.++.+|++.+.  +++|+|++
T Consensus       244 ~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~  321 (361)
T 3uem_A          244 EDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHS  321 (361)
T ss_dssp             TTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCS
T ss_pred             cccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcc
Confidence            11244578999999999988  455789999999999999999999999999988557999999998876  78999999


Q ss_pred             cceEEEEeCC--eEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        154 YPTLLWIESG--KKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       154 ~P~~~~~~~g--~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++++|..|  +...+|.|.++.++|.+||++...
T Consensus       322 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  357 (361)
T 3uem_A          322 FPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQ  357 (361)
T ss_dssp             SSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTTSC
T ss_pred             cCeEEEEECCCCcceeEecCCCCHHHHHHHHHhcCC
Confidence            9999999665  556789999999999999987654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.91  E-value=4.9e-22  Score=165.62  Aligned_cols=216  Identities=20%  Similarity=0.354  Sum_probs=155.6

Q ss_pred             CCCceEcChhhHHHHhcC--CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC-CCCeEEEEecc--ccchhhhhhCCcccc
Q psy14086         80 NEGLVELTEESFEKYVSL--GNHFVKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDC--TQHRSICQSFDIKSY  154 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~i~~~~vd~--~~~~~~~~~~~i~~~  154 (324)
                      ...+..++.++|++.+.+  ++++|.||++||++|+.+.|.|+++++.+.+ ...+.|+.+||  +.+..++++|+|+++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            457999999999988733  5789999999999999999999999999975 23699999999  678999999999999


Q ss_pred             ceEEEEeCCeE-----eeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC---C
Q psy14086        155 PTLLWIESGKK-----LDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS---G  226 (324)
Q Consensus       155 P~~~~~~~g~~-----~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~  226 (324)
                      |++++|++|+.     ...+.| .+.+.|.++|.+.+.....           ..+...+.+..++.+++.+++..   +
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~-----------~~p~~~p~l~~~~~~~l~~~~~~~~~~  158 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHD-----------TWPPACPPLEPAXLEEIDGFFARNNEE  158 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTT-----------SCCTTSCCCSCCCHHHHHTHHHHCCCS
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccc-----------cCCCCCCCcccccHHHHHHHhhcCCCc
Confidence            99999997432     224556 6999999999999875421           01111123445566677776632   3


Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecC-CCC
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNG-SRD  305 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g-~~~  305 (324)
                      .+.+.|....|.       ...+++.+ +.....+.+..++..   ...++++|+|+++|++++|..++....+.. .-+
T Consensus       159 ~~al~f~~~~~~-------~~~~~~~d-~~~~~~i~v~~~~~~---~~~l~~~f~v~~~Pslvl~~~~g~~~~~~~~~~~  227 (244)
T 3q6o_A          159 YLALIFEXGGSY-------LAREVALD-LSQHKGVAVRRVLNT---EANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMES  227 (244)
T ss_dssp             EEEEEEECTTCC-------HHHHHHHH-TTTCTTEEEEEEETT---CHHHHHHHTCCCSSEEEEEETTSCEEECCCSSSS
T ss_pred             eEEEEEEECCcc-------hHHHHHHH-hccCCceEEEEEeCc---hHHHHHHcCCCCCCeEEEEeCCCCeEeecccccc
Confidence            466777765432       34445534 333346888777744   388999999999999998875544445553 345


Q ss_pred             HHHHHHHHHhhcc
Q psy14086        306 LEELYQFILKHKV  318 (324)
Q Consensus       306 ~~~l~~fi~~~~~  318 (324)
                      .+.+..+|++..+
T Consensus       228 r~~~~~~l~~~~~  240 (244)
T 3q6o_A          228 RSFYTAYLQRLSG  240 (244)
T ss_dssp             HHHHHHHHHTC--
T ss_pred             HHHHHHHHHhCCC
Confidence            6777777766543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.90  E-value=6.6e-23  Score=188.69  Aligned_cols=198  Identities=22%  Similarity=0.454  Sum_probs=159.3

Q ss_pred             CCCCceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         79 VNEGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ..+.+..|+.++|++.+.++ +++|.||++||++|+.+.|.|++++..+++. ++.|+.|||+.++.+|++|+|+++|++
T Consensus        12 ~~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~   90 (504)
T 2b5e_A           12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQDLCMEHNIPGFPSL   90 (504)
T ss_dssp             TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            34679999999999988554 6799999999999999999999999999873 499999999999999999999999999


Q ss_pred             EEEeCCeE--eeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC-C--cEEEEE
Q psy14086        158 LWIESGKK--LDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS-G--TVFIKF  232 (324)
Q Consensus       158 ~~~~~g~~--~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~--~~~v~f  232 (324)
                      ++|++|+.  ...|.|.++.+.|.+|+.+.+.                     +.+..++.  +++++.. +  ..+|.|
T Consensus        91 ~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~---------------------~~v~~i~~--~~~~~~~~~~~~~~v~~  147 (504)
T 2b5e_A           91 KIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ---------------------PAVAVVAD--LPAYLANETFVTPVIVQ  147 (504)
T ss_dssp             EEEETTCTTCEEECCSCCSHHHHHHHHHHHTS---------------------CSEEECSC--HHHHHHHSCCSSCEEEE
T ss_pred             EEEeCCccccceeecCCCCHHHHHHHHHHhcC---------------------CcceeHHH--HHHHHhcCCCceEEEEE
Confidence            99999986  7789999999999999999987                     45777776  6666643 3  456666


Q ss_pred             eCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCC-C---CHHH
Q psy14086        233 FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS-R---DLEE  308 (324)
Q Consensus       233 ~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~-~---~~~~  308 (324)
                      +....+   ...+.|..+|.. ++.  .+.|+.++       +++++++++    +++|+.......|.|. .   +.+.
T Consensus       148 f~~~~~---~~~~~f~~~A~~-~~~--~~~F~~~~-------~~~~~~~~~----i~l~~~~~~~~~~~g~~~~~~~~~~  210 (504)
T 2b5e_A          148 SGKIDA---DFNATFYSMANK-HFN--DYDFVSAE-------NADDDFKLS----IYLPSAMDEPVVYNGKKADIADADV  210 (504)
T ss_dssp             EESCCH---HHHHHHHHHHHH-TTT--TCEEEEEE-------CTTSCCEEE----EEETTEEEEEEECCSCHHHHTSHHH
T ss_pred             eCCCCc---hHHHHHHHHHHH-hhc--CcEEEEEH-------HHHHhcCCe----EEecCCCCcccccCCcccccCCHHH
Confidence            665443   356788899955 544  68888776       234556664    7777653355578897 5   8999


Q ss_pred             HHHHHHhhc
Q psy14086        309 LYQFILKHK  317 (324)
Q Consensus       309 l~~fi~~~~  317 (324)
                      |.+||..+.
T Consensus       211 l~~fi~~~~  219 (504)
T 2b5e_A          211 FEKWLQVEA  219 (504)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHhcc
Confidence            999998753

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.90  E-value=6.9e-23  Score=170.17  Aligned_cols=159  Identities=13%  Similarity=0.204  Sum_probs=131.5

Q ss_pred             eEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChh
Q psy14086         10 VTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEE   89 (324)
Q Consensus        10 i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (324)
                      |.|+.+|+++++++|++|||+++||+++|.  +   ..+|.|.+..+.+.+|+.......           .....++++
T Consensus        65 v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~~--g---~~~~~G~~~~~~l~~fv~~~l~~~-----------~~~~~l~~~  128 (243)
T 2hls_A           65 LKLNVYYRESDSDKFSEFKVERVPTVAFLG--G---EVRWTGIPAGEEIRALVEVIMRLS-----------EDESGLEDA  128 (243)
T ss_dssp             EEEEEEETTTTHHHHHHTTCCSSSEEEETT--T---TEEEESCCCTTHHHHHHHHHHHHH-----------TTCCCCCHH
T ss_pred             eEEEEecCCcCHHHHHhcCCCcCCEEEEEC--C---ceeEcCCCcHHHHHHHHHHHHhcc-----------CCCCCCCHH
Confidence            999999999999999999999999999992  3   668999988888988888754210           012235666


Q ss_pred             hHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcC--CCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         90 SFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFK--TEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        90 ~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~--~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      .++...  ..+.+++.||++||++|+.+.|.|++++..+.  +..++.+..+|++.++.++++|+|.++|++++  +|+.
T Consensus       129 ~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~  206 (243)
T 2hls_A          129 TKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYL  206 (243)
T ss_dssp             HHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE
T ss_pred             HHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEE
Confidence            666554  23456899999999999999999999999983  21379999999999999999999999999988  6764


Q ss_pred             eeeecCCCCHHHHHHHHHhhhCC
Q psy14086        166 LDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       166 ~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                        .|.|.++.++|.+||.+.+..
T Consensus       207 --~~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          207 --VFVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             --EEESCCCHHHHHHHHHHHHTT
T ss_pred             --EEeCCCCHHHHHHHHHHHhhc
Confidence              399999999999999999874

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.88  E-value=8e-21  Score=173.37  Aligned_cols=214  Identities=21%  Similarity=0.369  Sum_probs=158.0

Q ss_pred             CCCceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC-CCCeEEEEeccc--cchhhhhhCCcccc
Q psy14086         80 NEGLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCT--QHRSICQSFDIKSY  154 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~i~~~~vd~~--~~~~~~~~~~i~~~  154 (324)
                      ...+..++.++|+..+.  +++++|.||++||++|+.+.|.|+++++.+++ ...+.|+.|||+  ++..++++|+|+++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            45799999999998773  35789999999999999999999999999975 236999999995  58899999999999


Q ss_pred             ceEEEEeC----CeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccC---Cc
Q psy14086        155 PTLLWIES----GKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKS---GT  227 (324)
Q Consensus       155 P~~~~~~~----g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~  227 (324)
                      |++++|++    |+....+.|..+.+.|.++|.+.+.....           ..+...+.+..++.+++++++..   ..
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~-----------~~P~~~p~l~~it~~~l~~~l~~~~~~~  159 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRD-----------TWPPACPPLEPAKLNDIDGFFTRNKADY  159 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCS-----------CCCTTCCCCSBCCHHHHTTGGGSCCCSE
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccc-----------cCCCCCCccCcCCHHHHHHHhccCCCCe
Confidence            99999985    44455677889999999999999975420           11111234566677778777754   35


Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC-CH
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR-DL  306 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~-~~  306 (324)
                      +++.|....       .....+++.. +.....+.+..++.+   +..++++|+|+++|++++|..++....+.... +.
T Consensus       160 vallF~~~~-------s~~~~~~~ld-l~~~~~v~v~~v~~~---~~~l~~kfgV~~~Pslvl~~~nGk~~~~~v~~~~r  228 (519)
T 3t58_A          160 LALVFERED-------SYLGREVTLD-LSQYHAVAVRRVLNT---ESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESR  228 (519)
T ss_dssp             EEEEEECTT-------CCHHHHHHHH-TTTCTTEEEEEEETT---CHHHHHHHTCCCSSEEEEEETTSCEEECCCSSCSH
T ss_pred             EEEEecCCc-------hHHHHHHHHH-hhccCCeeEEEecCc---hHHHHHHcCCCCCCeEEEEeCCCceeecccccccH
Confidence            777787642       2355666645 444446888776644   47899999999999999997655543444332 33


Q ss_pred             HHHHHHHHh
Q psy14086        307 EELYQFILK  315 (324)
Q Consensus       307 ~~l~~fi~~  315 (324)
                      ..+..+|.+
T Consensus       229 ~~~~~~l~~  237 (519)
T 3t58_A          229 SFYTSYLRG  237 (519)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            445555554

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.86  E-value=1.1e-19  Score=149.63  Aligned_cols=204  Identities=9%  Similarity=0.111  Sum_probs=163.1

Q ss_pred             CCceEc-ChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVEL-TEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l-~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +....| +.+++++++..+ .++|.|+++||   ....+.|.++|..++   .+.|+..   .+..++++++++. |+++
T Consensus         9 ~~~~~l~s~~~~~~~l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~---~~~F~~t---~~~~v~~~~~v~~-p~i~   78 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFIAATEVAVIGFFQDLE---IPAVPILHSMVQKFP---GVSFGIS---TDSEVLTHYNITG-NTIC   78 (227)
T ss_dssp             CCCEECCSHHHHHHHHHTSSEEEEEECSCSC---STHHHHHHHHTTTCT---TSEEEEE---CCHHHHHHTTCCS-SEEE
T ss_pred             CCCeeeCCHHHHHHHHhcCCeEEEEEecCCC---chhHHHHHHHHHhCC---CceEEEE---CCHHHHHHcCCCC-CeEE
Confidence            345555 668999988554 56899999985   568899999999994   5889864   4678999999987 9999


Q ss_pred             EEeCC-eEeeeecC----CCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCC-c-EEEE
Q psy14086        159 WIESG-KKLDKFQG----SRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSG-T-VFIK  231 (324)
Q Consensus       159 ~~~~g-~~~~~~~g----~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~-~~v~  231 (324)
                      +|++. .....|.|    .++.+.|.+||.....                     +.|.+++.+++.+++..+ + +++.
T Consensus        79 lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~---------------------plv~e~t~~n~~~~~~~~~~~~~l~  137 (227)
T 4f9z_D           79 LFRLVDNEQLNLEDEDIESIDATKLSRFIEINSL---------------------HMVTEYNPVTVIGLFNSVIQIHLLL  137 (227)
T ss_dssp             EEETTTTEEEEECHHHHHTCCHHHHHHHHHHHCC---------------------CSEEECCHHHHHHHHHSSCCEEEEE
T ss_pred             EEEecCcccccccccccCCCCHHHHHHHHHHhCC---------------------CceeecCcccHHHHhccCCceEEEE
Confidence            99974 34456774    7999999999999865                     569999999998888654 4 5567


Q ss_pred             EeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--ccceEEEEecC-eeeeee-cCCCCHH
Q psy14086        232 FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GFPSIYVYKNG-VRTAEY-NGSRDLE  307 (324)
Q Consensus       232 f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~P~l~~~~~g-~~~~~~-~g~~~~~  307 (324)
                      |+.+||..|..+.+.|+++|++ +++  ++.|+++|++......+.+.||++  ++|+++++..+ +....+ .|..+.+
T Consensus       138 f~~~~~~~~~~~~~~~~~vAk~-~k~--~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~  214 (227)
T 4f9z_D          138 IMNKASPEYEENMHRYQKAAKL-FQG--KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVE  214 (227)
T ss_dssp             EECTTSTTHHHHHHHHHHHHHH-TTT--TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHH
T ss_pred             EEcCCcchHHHHHHHHHHHHHH-hhC--CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHH
Confidence            7789999999999999999965 555  699999999742256678999998  89999999743 333344 3779999


Q ss_pred             HHHHHHHhhcc
Q psy14086        308 ELYQFILKHKV  318 (324)
Q Consensus       308 ~l~~fi~~~~~  318 (324)
                      .|.+|+++.+.
T Consensus       215 ~i~~Fv~~~~~  225 (227)
T 4f9z_D          215 HVQNFCDGFLS  225 (227)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.85  E-value=1.7e-20  Score=134.75  Aligned_cols=95  Identities=33%  Similarity=0.655  Sum_probs=86.1

Q ss_pred             ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      +.++|++.+.   +++++|.|||+||++|+.+.|.|.++++.+.+   +.|+.||+++++.++++|+|+++||+++|++|
T Consensus         7 ~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G   83 (105)
T 3zzx_A            7 DQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD---VVFLKVDVDECEDIAQDNQIACMPTFLFMKNG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---EEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC---eEEEEEecccCHHHHHHcCCCeecEEEEEECC
Confidence            4678988873   34689999999999999999999999999864   99999999999999999999999999999999


Q ss_pred             eEeeeecCCCCHHHHHHHHHhh
Q psy14086        164 KKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       164 ~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      +.+.++.|. +.++|.+||+++
T Consensus        84 ~~v~~~~G~-~~~~l~~~i~k~  104 (105)
T 3zzx_A           84 QKLDSLSGA-NYDKLLELVEKN  104 (105)
T ss_dssp             EEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEEeCc-CHHHHHHHHHhc
Confidence            999999995 899999999864

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.84  E-value=2.3e-20  Score=138.61  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=98.0

Q ss_pred             CceEcChhhHHHHh-cCCCEEEEEeCCC--CHhHhhHHHHHHHHHHhcCCCCC-eEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVELTEESFEKYV-SLGNHFVKFYAPW--CGHCQSLAPVWQELASHFKTEED-VSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l~~~~f~~~~-~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+..+|+++|++.+ ..++++|.||++|  |++|+.+.|.+.+++++|.+  + +.|++||+++++.++.+|||+++||+
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~~~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQSEAIGDRFGAFRFPAT   95 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHHHHHHHHHTCCSSSEE
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCCHHHHHHcCCccCCEE
Confidence            57799999999988 4457999999999  99999999999999999987  8 99999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++|+.+.+..|..+.+.|.++|++.+.
T Consensus        96 ilFk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           96 LVFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999885

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.84  E-value=3.7e-20  Score=136.90  Aligned_cols=105  Identities=15%  Similarity=0.258  Sum_probs=96.8

Q ss_pred             CCceEcChhhHHHHhc-CC-CEEEEEeCCCC--HhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         81 EGLVELTEESFEKYVS-LG-NHFVKFYAPWC--GHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~-~~-~~~v~f~~~~c--~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      .....+|+++|++.+. .+ +++|.||++||  ++|+.+.|.+.+++++|.+  ++.|++||+++++.++.+|||+++||
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCccCCE
Confidence            3677999999999884 33 68999999999  9999999999999999987  89999999999999999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|++|+.+.+..|..+.++|.++|++++.
T Consensus        93 lilFkdG~~v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           93 LAVVQPERTLGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             EEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999999999998873

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.83  E-value=3e-20  Score=133.39  Aligned_cols=98  Identities=29%  Similarity=0.657  Sum_probs=85.0

Q ss_pred             eEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        212 VSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       212 ~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      ..+++ ++|++.+.   +++++|.||++||++|+.+.|.+++++.. +.   ++.|+.+|++.  +++++++|+|+++||
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~-~~---~~~~~~vd~d~--~~~l~~~~~V~~~PT   76 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQS-MS---DVVFLKVDVDE--CEDIAQDNQIACMPT   76 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TEEEEEEETTT--CHHHHHHTTCCBSSE
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhc-cC---CeEEEEEeccc--CHHHHHHcCCCeecE
Confidence            44544 56887774   35799999999999999999999999954 43   58999999999  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      +++|++|+.+..+.|. +.++|.+||+++
T Consensus        77 ~~~~~~G~~v~~~~G~-~~~~l~~~i~k~  104 (105)
T 3zzx_A           77 FLFMKNGQKLDSLSGA-NYDKLLELVEKN  104 (105)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCc-CHHHHHHHHHhc
Confidence            9999999999889994 899999999875

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.83  E-value=4.4e-20  Score=137.86  Aligned_cols=106  Identities=24%  Similarity=0.458  Sum_probs=94.1

Q ss_pred             CCCceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC---CCCeEEEEeccccchhhhhhCCcccc
Q psy14086         80 NEGLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKT---EEDVSIAKIDCTQHRSICQSFDIKSY  154 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~---~~~i~~~~vd~~~~~~~~~~~~i~~~  154 (324)
                      ...+..|+.++|++.+.  +++++|.||++||++|+.+.|.|+++++.+..   ..++.|+.||++++..++++|+|+++
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~   93 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF   93 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence            45799999999999883  56789999999999999999999999987642   23799999999999999999999999


Q ss_pred             ceEEEEeCCeEe--eeecCCCCHHHHHHHHHhh
Q psy14086        155 PTLLWIESGKKL--DKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       155 P~~~~~~~g~~~--~~~~g~~~~~~i~~fi~~~  185 (324)
                      |++++|++|+..  ..|.|.++.++|.+||.+.
T Consensus        94 Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           94 PTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999999987653  5799999999999999874

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.83  E-value=4.4e-20  Score=137.84  Aligned_cols=108  Identities=28%  Similarity=0.580  Sum_probs=94.2

Q ss_pred             CCCCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhc--CCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        207 KPEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLD--NKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~--~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      .++.|..|++++|++.+.  +++++|.||++||++|+.+.|.|++++.++..  ...++.|+.+|++.  +++++++|+|
T Consensus        13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v   90 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRV   90 (127)
T ss_dssp             CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTC
T ss_pred             CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCC
Confidence            346799999999999884  46899999999999999999999999966432  22469999999999  8999999999


Q ss_pred             CccceEEEEecCeee--eeecCCCCHHHHHHHHHhh
Q psy14086        283 DGFPSIYVYKNGVRT--AEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~--~~~~g~~~~~~l~~fi~~~  316 (324)
                      +++||+++|++|+..  ..|.|.++.+.|.+||.++
T Consensus        91 ~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           91 SGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             CSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999999999987653  5799999999999999875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.83  E-value=1.4e-19  Score=131.64  Aligned_cols=105  Identities=21%  Similarity=0.432  Sum_probs=97.7

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..+..++.++|.+.+  .+++++|.||++||++|+.+.|.+.++++.+.+  ++.|+.+|++.++.++++|+|+++|+++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            368899999999988  455789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++|+...++.|..+.++|.+||++.++
T Consensus        82 ~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           82 YFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            99999998899999999999999998764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.82  E-value=1.4e-19  Score=135.85  Aligned_cols=104  Identities=13%  Similarity=0.190  Sum_probs=91.6

Q ss_pred             ceEcC-hhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         83 LVELT-EESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        83 ~~~l~-~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +..++ .++|++.+.   +++++|.|||+||++|+.+.|.++++++++.+  ++.|++||++++++++++|+|+++||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            44554 578987762   45789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEe--e-------eecCCCC-HHHHHHHHHhhhCC
Q psy14086        159 WIESGKKL--D-------KFQGSRT-LETLVNYVSKMKGP  188 (324)
Q Consensus       159 ~~~~g~~~--~-------~~~g~~~-~~~i~~fi~~~~~~  188 (324)
                      +|.+|+.+  .       +..|..+ .++|.++|+..+.+
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~  140 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG  140 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence            99999887  4       7889877 99999999888754

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.82  E-value=2.2e-19  Score=130.64  Aligned_cols=105  Identities=42%  Similarity=0.913  Sum_probs=97.5

Q ss_pred             CCceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         81 EGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      +.+..++.++|++.+.+++++|.||++||++|+.+.|.|.++++.+... ..+.|+.+|++.+..++++|+|+++|++++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   84 (111)
T 3uvt_A            5 STVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLL   84 (111)
T ss_dssp             CCSEECCTTTHHHHHHSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CcceEcChhhHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEE
Confidence            4789999999999998888999999999999999999999999998643 479999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      +++|+...++.|..+.++|.+||++.
T Consensus        85 ~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           85 FRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            99999988999999999999999874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.82  E-value=2.2e-19  Score=129.47  Aligned_cols=102  Identities=31%  Similarity=0.610  Sum_probs=96.2

Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      .+..++.++|++.+.+++++|+||++||++|+.+.|.++++++.+++  ++.|+.+|++.++.++++|+|+++|++++++
T Consensus         4 ~v~~l~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   81 (106)
T 3die_A            4 AIVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENPSTAAKYEVMSIPTLIVFK   81 (106)
T ss_dssp             CCEECCTTTHHHHSCSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred             ceEECCHHHHHHHhcCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCHHHHHhCCCcccCEEEEEe
Confidence            57889999999999777889999999999999999999999999987  7999999999999999999999999999999


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      +|+...++.|..+.++|.+||++.
T Consensus        82 ~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           82 DGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             CCeEEEEEeCCCCHHHHHHHHHHh
Confidence            999988999999999999999875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.82  E-value=1.1e-19  Score=132.27  Aligned_cols=106  Identities=46%  Similarity=1.003  Sum_probs=95.8

Q ss_pred             CCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      +.+..+++++|++.+.+++++|.||++||++|+.+.|.+++++.++......+.++.+|++.  +++++++|+|+++|++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            5 STVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSVRGYPTL   82 (111)
T ss_dssp             CCSEECCTTTHHHHHHSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             CcceEcChhhHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCCCcccEE
Confidence            56899999999999988899999999999999999999999996543333479999999999  8999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ++|++|+.+..+.|..+.+.|.+||.++
T Consensus        83 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            9999999988999999999999999875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.81  E-value=3e-19  Score=130.23  Aligned_cols=105  Identities=30%  Similarity=0.542  Sum_probs=96.8

Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      .+..++.++|++.+.+++++|.||++||++|+.+.|.|.++++.+++  ++.|+.+|++.+..++++|+|.++|++++++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (112)
T 2voc_A            2 AIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAGKYGVMSIPTLLVLK   79 (112)
T ss_dssp             CCEECCTTTHHHHHSSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCCSHHHHTTCCSBSEEEEEE
T ss_pred             CeEEecHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence            36789999999888555789999999999999999999999999987  7999999999999999999999999999998


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +|+...++.|..+.++|.+|+.+.+..
T Consensus        80 ~G~~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           80 DGEVVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            899888999999999999999988774

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.81  E-value=1.2e-19  Score=134.28  Aligned_cols=104  Identities=19%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             CCeeEeccccccccccC-C-cEEEEEeCCCC--hhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIKS-G-TVFIKFFAPWC--GHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~-~~~v~f~~~~c--~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      .....+++++|++.+.+ + +++|+||++||  ++|+.+.|++++++.+ +..  ++.|+++|.+.  +++++.+|+|.+
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e-~~~--~v~~~KVdvDe--~~~la~~ygV~s   89 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINA-FPG--RLVAAEVAAEA--ERGLMARFGVAV   89 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHT-STT--TEEEEEECGGG--HHHHHHHHTCCS
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHH-ccC--CcEEEEEECCC--CHHHHHHcCCcc
Confidence            45678999999988743 4 79999999999  9999999999999965 544  79999999999  999999999999


Q ss_pred             cceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +||+++|++|+.+....|..+.+.+.++|.+++
T Consensus        90 iPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           90 CPSLAVVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             SSEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999998876

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.81  E-value=4.2e-20  Score=137.14  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             CeeEecccccccccc-CCcEEEEEeCCC--ChhhhhhhHhHHHHHHHhhcCCCC-eEEEEEecCCccchhhhhhcCCCcc
Q psy14086        210 PVVSLTSENFNDVIK-SGTVFIKFFAPW--CGHCKRLAPTWEELGTKLLDNKHG-IVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~-~~~~~v~f~~~~--c~~C~~~~~~~~~~a~~~~~~~~~-~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      .+..+++++|++.+. +++++|+||++|  |++|+.+.|++++++.+ +.+  + +.|+++|++.  +++++.+|+|.++
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e-~~g--~~v~~~KVdvDe--~~~lA~~ygV~sI   92 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHE-FPD--YTWQVAIADLEQ--SEAIGDRFGAFRF   92 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTT-CTT--SCCEEEECCHHH--HHHHHHHHTCCSS
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHH-cCC--CeEEEEEEECCC--CHHHHHHcCCccC
Confidence            477899999998884 458999999999  99999999999999955 554  6 9999999999  9999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ||+++|++|+.+....|..+.+.+.+||++.+.
T Consensus        93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999998764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.81  E-value=3e-19  Score=129.88  Aligned_cols=105  Identities=22%  Similarity=0.400  Sum_probs=95.4

Q ss_pred             CCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..+..++.++|++.+  .+++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++|+|.++|
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~P   78 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLN-YEE--SFGFYYVDVEE--EKTLFQRFSLKGVP   78 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTT--CHHHHHHTTCCSSC
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHH-cCC--ceEEEEEECCc--ChhHHHhcCCCcCC
Confidence            568999999999988  346899999999999999999999999955 544  69999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.++
T Consensus        79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            99999999998889999999999999998865

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.81  E-value=6.7e-19  Score=127.42  Aligned_cols=103  Identities=27%  Similarity=0.601  Sum_probs=94.7

Q ss_pred             CceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++.++|.+.+  .+++++|.||++||++|+.+.|.++++++.+.+  ++.|+.+|++.++.++++|+|.++|++++
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   80 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence            57889999999765  345789999999999999999999999999987  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++|+...++.|..+.++|.+||++.+
T Consensus        81 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           81 FKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            999998888999999999999998875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.81  E-value=6e-19  Score=127.81  Aligned_cols=104  Identities=23%  Similarity=0.507  Sum_probs=96.5

Q ss_pred             CCceEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         81 EGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ..+..++.++|++.+ ++++++|+||++||++|+.+.|.++++++.+++  ++.|+.+|++.++.++++|+|.++|++++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A            4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQKIADKYSVLNIPTTLI   81 (109)
T ss_dssp             CCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCHHHHHhcCcccCCEEEE
Confidence            367899999999888 455779999999999999999999999999987  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +.+|+...++.|..+.++|.++|++++
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           82 FVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            999999999999999999999999875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.80  E-value=2.9e-19  Score=134.10  Aligned_cols=103  Identities=17%  Similarity=0.146  Sum_probs=88.6

Q ss_pred             eeEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        211 VVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       211 v~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +..|+. .+|++.+.   +++++|.||++||++|+.+.|.++++|.+ +..  .+.|+++|+++  +++++.+|+|.++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e-~~~--~v~f~kVDVDe--~~e~a~~y~V~siP   97 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADD-IKN--FCVIYLVDITE--VPDFNTMYELYDPV   97 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHH-HTT--TEEEEEEETTT--CCTTTTTTTCCSSE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHH-ccC--CcEEEEEECCC--CHHHHHHcCCCCCC
Confidence            556665 56887663   45899999999999999999999999976 444  58999999999  99999999999999


Q ss_pred             eEEEEecCeee--e-------eecCCCC-HHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRT--A-------EYNGSRD-LEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~--~-------~~~g~~~-~~~l~~fi~~~~~  318 (324)
                      |+++|++|+.+  .       ...|..+ .++|.++|+.++.
T Consensus        98 T~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A           98 SVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             EEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence            99999999886  4       6788876 8999999988764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.80  E-value=1.3e-18  Score=128.18  Aligned_cols=107  Identities=26%  Similarity=0.519  Sum_probs=97.1

Q ss_pred             CCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         79 VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ....+..++.++|.+.+  .+++++|+||++||++|+.+.+.|.++++.+.+  ++.|+.+|++.+..++++|+|.++|+
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt   88 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDLAIEYEVSAVPT   88 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCcccE
Confidence            34578999999999876  345789999999999999999999999999977  79999999999999999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++++++|+...++.|..+.+.|.+||++.++
T Consensus        89 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           89 VLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            9999989888889999999999999998763

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.80  E-value=8e-19  Score=126.50  Aligned_cols=104  Identities=28%  Similarity=0.504  Sum_probs=94.5

Q ss_pred             CCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      ..+..+++++|++.+.+++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  +++++++|+++++|++
T Consensus         3 ~~v~~l~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~Pt~   77 (106)
T 3die_A            3 MAIVKVTDADFDSKVESGVQLVDFWATACGPCKMIAPVLEELAAD-YEG--KADILKLDVDE--NPSTAAKYEVMSIPTL   77 (106)
T ss_dssp             CCCEECCTTTHHHHSCSSEEEEEEECSBCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHTTCCSBSEE
T ss_pred             cceEECCHHHHHHHhcCCcEEEEEECCCCHHHHHHhHHHHHHHHH-hcC--CcEEEEEECCc--CHHHHHhCCCcccCEE
Confidence            468899999999988777999999999999999999999999965 544  59999999999  8999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++|++|+.+..+.|..+.+++.+||.+.+
T Consensus        78 ~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           78 IVFKDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             EEEeCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            99999998888999999999999998763

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.80  E-value=9.5e-19  Score=132.85  Aligned_cols=105  Identities=20%  Similarity=0.403  Sum_probs=97.3

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..+..++.++|.+.+  .+++++|+||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+..++++|+|+++|+++
T Consensus         6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   83 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTFK   83 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCHHHHHHHTCCEESEEE
T ss_pred             cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCHhHHHHCCCCcCCEEE
Confidence            478999999999554  445789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++|+.+.++.|..+.++|.+||++.+.
T Consensus        84 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           84 FFCHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEeCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            99999998899999999999999999886

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.80  E-value=7.2e-19  Score=128.21  Aligned_cols=106  Identities=30%  Similarity=0.583  Sum_probs=94.8

Q ss_pred             CeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        210 PVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      .+..++.++|++.+.+++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  +++++++|+|.++|+++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~   76 (112)
T 2voc_A            2 AIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQE-MGD--KLKIVKIDVDE--NQETAGKYGVMSIPTLL   76 (112)
T ss_dssp             CCEECCTTTHHHHHSSSEEEEEEECTTBGGGGGHHHHHHHHHHH-HTT--TCEEEEEETTT--CCSHHHHTTCCSBSEEE
T ss_pred             CeEEecHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-hCC--CcEEEEEECCC--CHHHHHHcCCCcccEEE
Confidence            36788999998887556899999999999999999999999965 544  69999999999  89999999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      +|++|+.+..+.|..+.+.|.+||.++++..
T Consensus        77 ~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           77 VLKDGEVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            9999998888999999999999999887654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.80  E-value=9.6e-19  Score=125.89  Aligned_cols=102  Identities=28%  Similarity=0.595  Sum_probs=93.0

Q ss_pred             ceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         83 LVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        83 ~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      +..++.++|++.+. +++++|.||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+..++++|+|+++|++++++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   79 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCHHHHHHcCCccccEEEEEe
Confidence            56889999997764 45789999999999999999999999999987  7999999999999999999999999999999


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +|+...++.|..+.++|.++|.+.+
T Consensus        80 ~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           80 GGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             CCeEEEEEecCCCHHHHHHHHHHHh
Confidence            8988888999999999999987654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.80  E-value=1.8e-18  Score=133.44  Aligned_cols=105  Identities=27%  Similarity=0.547  Sum_probs=97.6

Q ss_pred             CCceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         81 EGLVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ..+.+++.++|.+.+. +++++|+||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.++.++++|+|+++|++++
T Consensus        47 ~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  124 (155)
T 2ppt_A           47 GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAFIL  124 (155)
T ss_dssp             SSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred             CCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence            3578899999999873 45789999999999999999999999999987  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |++|+...++.|..+.++|.+||++.++
T Consensus       125 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          125 FHKGRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence            9999988899999999999999999886

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=2.1e-18  Score=130.99  Aligned_cols=109  Identities=34%  Similarity=0.738  Sum_probs=98.1

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceE
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ...+..++.++|++.+.+ ++++|+||++||++|+.+.|.|.++++.+++. ..+.|+.+|++.+..++++|+|.++|++
T Consensus        16 ~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           16 ENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI   95 (140)
T ss_dssp             ETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeE
Confidence            456899999999998855 46899999999999999999999999999762 2499999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ++|++|+ ..+|.|..+.++|.+||.+.+...
T Consensus        96 ~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~  126 (140)
T 2dj1_A           96 KILKKGQ-AVDYDGSRTQEEIVAKVREVSQPD  126 (140)
T ss_dssp             EEEETTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred             EEEECCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence            9998898 778999999999999999998754

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=131.48  Aligned_cols=107  Identities=34%  Similarity=0.697  Sum_probs=97.8

Q ss_pred             CCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcC----CCCCeEEEEeccccchhhhhhCCccc
Q psy14086         80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFK----TEEDVSIAKIDCTQHRSICQSFDIKS  153 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~----~~~~i~~~~vd~~~~~~~~~~~~i~~  153 (324)
                      ...+..++.++|.+.+  ..++++|+||++||++|+.+.|.|.+++..+.    +  ++.|+.+|++.+..++++|+|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG--KVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTT--SEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCC--cEEEEEEECCCCHHHHHhCCCCe
Confidence            3468999999999876  34578999999999999999999999999997    5  79999999999999999999999


Q ss_pred             cceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        154 YPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       154 ~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +|++++|++|+...+|.|..+.++|.+||.+.+..
T Consensus        84 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           84 FPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             SSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             eCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhc
Confidence            99999999998888899999999999999998864

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.79  E-value=1.5e-18  Score=125.25  Aligned_cols=103  Identities=28%  Similarity=0.601  Sum_probs=94.4

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +.+..++.++|.+.+  .+++++|.||++||++|+.+.|.+.++++.+.+  ++.|+.+|++.++.++++|+|.++|+++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            368899999998776  345789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++++|+...++.|..+.+.|.+||++.
T Consensus        80 ~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           80 LVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            999899888899999999999999875

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.79  E-value=9.7e-19  Score=128.32  Aligned_cols=102  Identities=21%  Similarity=0.463  Sum_probs=93.3

Q ss_pred             CCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         81 EGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ......+.++|++.+.   +++++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|++.++.++++|+|+++|++
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~vd~d~~~~l~~~~~v~~~Pt~   88 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTF   88 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT---SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCccccEE
Confidence            4677788999999885   55789999999999999999999999999865   99999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++++|+...++.|. +.+.|.++|++++
T Consensus        89 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           89 QFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            999999998889999 9999999998763

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.79  E-value=1.1e-18  Score=130.20  Aligned_cols=104  Identities=26%  Similarity=0.569  Sum_probs=95.2

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..+..++.++|++.+  .+++++|.||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+..++++|+|.++|+++
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   99 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   99 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCCTTSGGGTCCSSSEEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCccCEEE
Confidence            358899999999765  345789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +|++|+...++.|..+.++|.+||++.+
T Consensus       100 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          100 LFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            9988998888999999999999999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.79  E-value=2.1e-18  Score=132.98  Aligned_cols=126  Identities=25%  Similarity=0.424  Sum_probs=99.0

Q ss_pred             CCceEcC-hhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         81 EGLVELT-EESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~-~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ..+..++ .++|++.+.   +++++|.||++||++|+.+.|.|.++++.+.   ++.|+.||++.+..++++|+|+++|+
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt   88 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSVPT   88 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCHHHHHHcCCCCCCE
Confidence            3677776 688988874   5688999999999999999999999999984   59999999999999999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK  224 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~  224 (324)
                      +++|++|+...++.|. +.++|.+||++.+...              .+..+..+..++..+|+++..
T Consensus        89 ~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l~~~--------------~~~~~~~~~~l~~~~f~~~~~  141 (153)
T 2wz9_A           89 FLFFKNSQKIDRLDGA-HAPELTKKVQRHASSG--------------SFLPSAKVKVDTDPNSSSVDK  141 (153)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHSCTT--------------SSCSCCCCCCC----------
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHHHhccc--------------cCCCccccccCCCCChhhHHH
Confidence            9999999888888885 7889999999998743              112235677788888887653

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.79  E-value=1.7e-18  Score=125.05  Aligned_cols=103  Identities=29%  Similarity=0.595  Sum_probs=94.5

Q ss_pred             CceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++.++|.+.+  .+++++|.||++||++|+.+.|.+++++..+++  ++.|+.+|++.++.++++|+|.++|++++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCCcCCEEEE
Confidence            36789999999876  345789999999999999999999999999987  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++|+...++.|..+.+++.++|++.+
T Consensus        80 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           80 FKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             ESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            988988888999999999999998875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.79  E-value=2.5e-18  Score=125.76  Aligned_cols=105  Identities=21%  Similarity=0.525  Sum_probs=97.0

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..+..++.++|.+.+  .+++++|.||++||++|+.+.|.|++++..+++  ++.|+.+|++.++.++++|+|.++|+++
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   84 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCHHHHHHcCCCceeEEE
Confidence            468999999999876  445789999999999999999999999999987  6999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++++|+...++.|..+.++|.+||.+.++
T Consensus        85 ~~~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           85 LVKGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEcCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            99889988889999999999999999876

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.79  E-value=2.3e-18  Score=125.43  Aligned_cols=104  Identities=24%  Similarity=0.521  Sum_probs=95.4

Q ss_pred             CceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++.++|.+.+  .+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..++++|+|.++|++++
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   83 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENPGTAAKYGVMSIPTLNV   83 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCHHHHHhCCCCcccEEEE
Confidence            57899999998766  345789999999999999999999999999976  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|+...++.|..+.++|.+||++.+.
T Consensus        84 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           84 YQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            9999988889999999999999998764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.79  E-value=2.4e-18  Score=131.96  Aligned_cols=107  Identities=25%  Similarity=0.554  Sum_probs=99.1

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ...+..++.++|++.+.. ++++|+||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+..++++|+|+++|+++
T Consensus        37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~  114 (148)
T 3p2a_A           37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEPALSTRFRIRSIPTIM  114 (148)
T ss_dssp             CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCHHHHHHCCCCccCEEE
Confidence            457899999999998844 4789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +|++|+...++.|..+.++|.+||++.+..
T Consensus       115 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          115 LYRNGKMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            999999988999999999999999998873

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=130.10  Aligned_cols=107  Identities=32%  Similarity=0.623  Sum_probs=93.9

Q ss_pred             CCCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        208 PEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      ...+..+++++|++.+.+ .++|.||++||++|+.+.|.|++++.++...  ++.|+.+|++.  +.+++++|+|.++|+
T Consensus         6 ~~~v~~l~~~~f~~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~v~~~~vd~~~--~~~~~~~~~v~~~Pt   80 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGEDL--EVNIAKVDVTE--QPGLSGRFIINALPT   80 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             CCccEEecHHHHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECcC--CHHHHHHcCCcccCE
Confidence            367999999999988754 4999999999999999999999999664322  59999999998  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      +++|++|+ +..+.|..+.+.|.+||.+.+...
T Consensus        81 ~~~~~~G~-~~~~~G~~~~~~l~~~l~~~~~~~  112 (126)
T 1x5e_A           81 IYHCKDGE-FRRYQGPRTKKDFINFISDKEWKS  112 (126)
T ss_dssp             EEEEETTE-EEECCSCCCHHHHHHHHHTCGGGG
T ss_pred             EEEEeCCe-EEEeecCCCHHHHHHHHHHHhhcc
Confidence            99999988 468899999999999999887643

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=1.1e-18  Score=132.51  Aligned_cols=111  Identities=35%  Similarity=0.716  Sum_probs=97.2

Q ss_pred             CCCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        207 KPEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ....+..+++++|++.+.+ ++++|.||++||++|+.+.|.|++++.++......+.|+.+|++.  +.+++++|+|.++
T Consensus        15 ~~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~   92 (140)
T 2dj1_A           15 EENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSGY   92 (140)
T ss_dssp             EETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCSS
T ss_pred             CCCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCcc
Confidence            3467999999999988865 579999999999999999999999996654433459999999999  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      |++++|++|+ +..|.|..+.+.|.+||.+.++..
T Consensus        93 Pt~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~  126 (140)
T 2dj1_A           93 PTIKILKKGQ-AVDYDGSRTQEEIVAKVREVSQPD  126 (140)
T ss_dssp             SEEEEEETTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence            9999999998 668899999999999999987643

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.79  E-value=8.4e-18  Score=138.27  Aligned_cols=161  Identities=15%  Similarity=0.210  Sum_probs=135.2

Q ss_pred             ceEEEEeeCccchhhhccCCCccCCceEEEecCCcccccccCC----CCChHHHHHHHHhhhcCCCCCCCCCCCCCCCce
Q psy14086          9 RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRG----TRDLPTLTNFINEQISETPKEPSDKPIVNEGLV   84 (324)
Q Consensus         9 ~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (324)
                      ++.|+.+   .++++|++|+|++ |+|++|+... .....|.|    .++.++|.+|++.+..|             .+.
T Consensus        55 ~~~F~~t---~~~~v~~~~~v~~-p~i~lfk~~~-~~~~~~~~~~~g~~~~~~l~~fi~~~~~p-------------lv~  116 (227)
T 4f9z_D           55 GVSFGIS---TDSEVLTHYNITG-NTICLFRLVD-NEQLNLEDEDIESIDATKLSRFIEINSLH-------------MVT  116 (227)
T ss_dssp             TSEEEEE---CCHHHHHHTTCCS-SEEEEEETTT-TEEEEECHHHHHTCCHHHHHHHHHHHCCC-------------SEE
T ss_pred             CceEEEE---CCHHHHHHcCCCC-CeEEEEEecC-cccccccccccCCCCHHHHHHHHHHhCCC-------------cee
Confidence            6888875   4789999999998 9999999654 44567884    89999999999999876             899


Q ss_pred             EcChhhHHHHhcCC-CE-EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCcc--ccceEE
Q psy14086         85 ELTEESFEKYVSLG-NH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIK--SYPTLL  158 (324)
Q Consensus        85 ~l~~~~f~~~~~~~-~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~--~~P~~~  158 (324)
                      ++|.+++.++...+ +. ++.|..+||..|..+.+.|+++|+.+++  ++.|+.+|++  .+..+++.||+.  .+|+++
T Consensus       117 e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~--~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~  194 (227)
T 4f9z_D          117 EYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQG--KILFILVDSGMKENGKVISFFKLKESQLPALA  194 (227)
T ss_dssp             ECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTT--TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEE
T ss_pred             ecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhC--CEEEEEeCCccHhHHHHHHHcCCCcccCCEEE
Confidence            99999999888655 44 5667789999999999999999999998  7999999996  467889999998  799999


Q ss_pred             EEeCCe-Eeeee-cCCCCHHHHHHHHHhhhCCC
Q psy14086        159 WIESGK-KLDKF-QGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       159 ~~~~g~-~~~~~-~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ++..+. ....+ .+.++.+.|.+|+++++.|+
T Consensus       195 i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          195 IYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             EEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             EEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            998533 22233 37899999999999998863

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.79  E-value=2.1e-18  Score=124.81  Aligned_cols=104  Identities=26%  Similarity=0.625  Sum_probs=92.5

Q ss_pred             CCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +.|..+++++|++.+  .+++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~P   76 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQG--KLTVAKLNIDQ--NPGTAPKYGIRGIP   76 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TEEEEEEETTT--CTTHHHHTTCCSSS
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHH-hCC--CcEEEEEECCC--CHHHHHHcCCcccC
Confidence            468899999998655  345899999999999999999999999955 444  59999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.+
T Consensus        77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           77 TLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            9999999998888999999999999998875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.78  E-value=2.7e-18  Score=124.31  Aligned_cols=104  Identities=21%  Similarity=0.517  Sum_probs=94.9

Q ss_pred             CceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         82 GLVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      .+..++.++|.+.+. +++++|+||++||++|+.+.|.++++++.+.+  ++.|+.+|++.+..++++|++.++|+++++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCHhHHHhCCCCcCCEEEEE
Confidence            467899999997774 45789999999999999999999999999987  799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|+...++.|..+.++|.+|+++.++
T Consensus        80 ~~g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           80 KDGQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence            989888889999999999999998775

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.78  E-value=2e-18  Score=131.22  Aligned_cols=107  Identities=27%  Similarity=0.539  Sum_probs=94.5

Q ss_pred             CCCCceEcChhhHHHHhc-------------CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhh
Q psy14086         79 VNEGLVELTEESFEKYVS-------------LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSI  145 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~~-------------~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~  145 (324)
                      ....+..++.++|...+.             +++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..+
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~   97 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPEL   97 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCHHH
Confidence            445789999999998874             35789999999999999999999999999987  799999999999999


Q ss_pred             hhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        146 CQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       146 ~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|+|.++|++++|+.++...++.|..+.++|.+||++.+.
T Consensus        98 ~~~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           98 ARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHTTCCSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHcCCCCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999999664444589999999999999998875

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.78  E-value=2.1e-18  Score=134.02  Aligned_cols=107  Identities=8%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             CCceEcChhhHHHHhcC---CCEEEEEeC-------CCCHhHhhHHHHHHHHHHhcC-----CCCCeEEEEeccccchhh
Q psy14086         81 EGLVELTEESFEKYVSL---GNHFVKFYA-------PWCGHCQSLAPVWQELASHFK-----TEEDVSIAKIDCTQHRSI  145 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~---~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~-----~~~~i~~~~vd~~~~~~~  145 (324)
                      ..+..||+++|++.+..   .+++|.||+       +||++|+.+.|+|+++|+++.     +  ++.|++||+++++.+
T Consensus        18 ~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~--~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           18 TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQS--LNLFFTVDVNEVPQL   95 (178)
T ss_dssp             TSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTC--CEEEEEEETTTCHHH
T ss_pred             CCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCC--CEEEEEEECccCHHH
Confidence            47999999999998843   247999999       499999999999999999997     5  899999999999999


Q ss_pred             hhhCCccccceEEEEeCCeEe------------eee---cC-CCCHHHHHHHHHhhhCCC
Q psy14086        146 CQSFDIKSYPTLLWIESGKKL------------DKF---QG-SRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       146 ~~~~~i~~~P~~~~~~~g~~~------------~~~---~g-~~~~~~i~~fi~~~~~~~  189 (324)
                      +++|||+++|++++|++|...            ..|   .| .++++.|.+||.+.++..
T Consensus        96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~  155 (178)
T 3ga4_A           96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNIS  155 (178)
T ss_dssp             HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCC
T ss_pred             HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCC
Confidence            999999999999999987422            245   35 799999999999998844

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.78  E-value=3.6e-18  Score=122.78  Aligned_cols=102  Identities=28%  Similarity=0.649  Sum_probs=93.3

Q ss_pred             ceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +..++.++|++.+  .+++++|+||++||++|+.+.|.+.++++.+++  ++.|+.+|++.++.++++|+|+++|+++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            5678999999876  345789999999999999999999999999987  799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++|+...++.|..+.+.+.++|++++
T Consensus        80 ~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           80 KNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             eCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            99998888999999999999998753

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=2e-18  Score=129.32  Aligned_cols=107  Identities=33%  Similarity=0.694  Sum_probs=96.7

Q ss_pred             CCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         79 VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ....+..++.++|++.+  .+++++|+||++||++|+.+.|.|.++++.+++  .+.|+.+|++.+..++++|+|+++|+
T Consensus        15 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (130)
T 2dml_A           15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPT   92 (130)
T ss_dssp             TTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHcCCCccCE
Confidence            34578999999999865  345789999999999999999999999999987  79999999999999999999999999


Q ss_pred             EEEEeCCeE-eeeecCCCCHHHHHHHHHhhhC
Q psy14086        157 LLWIESGKK-LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       157 ~~~~~~g~~-~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|++|+. ..+|.|..+.++|.+|+.+.+.
T Consensus        93 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           93 IKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            999998765 7789999999999999998875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.78  E-value=2e-18  Score=124.97  Aligned_cols=104  Identities=22%  Similarity=0.490  Sum_probs=94.4

Q ss_pred             CCeeEecccccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        209 EPVVSLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      +.+..+++++|++.+. +++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++|++.++|+
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~i~~~Pt   78 (109)
T 3tco_A            4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEK-YKG--KAVFGRLNVDE--NQKIADKYSVLNIPT   78 (109)
T ss_dssp             CCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             CeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHH-hCC--CceEEEEcccc--CHHHHHhcCcccCCE
Confidence            5688999999998885 45899999999999999999999999955 544  69999999999  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +++|++|+.+..+.|..+.+.|.+||++.+
T Consensus        79 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           79 TLIFVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            999999999888999999999999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=2.5e-18  Score=128.08  Aligned_cols=105  Identities=30%  Similarity=0.662  Sum_probs=94.8

Q ss_pred             CCCceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         80 NEGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ...+..++.++|++.+.+ .++|+||++||++|+.+.|.|.++++.+.+ .++.|+.+|++.+..++++|+|+++|++++
T Consensus         6 ~~~v~~l~~~~f~~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~   83 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPTIYH   83 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGG-GTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCccEEecHHHHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECcCCHHHHHHcCCcccCEEEE
Confidence            357899999999987755 489999999999999999999999999864 259999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|+ ..++.|..+.++|.+||.+.+.
T Consensus        84 ~~~G~-~~~~~G~~~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           84 CKDGE-FRRYQGPRTKKDFINFISDKEW  110 (126)
T ss_dssp             EETTE-EEECCSCCCHHHHHHHHHTCGG
T ss_pred             EeCCe-EEEeecCCCHHHHHHHHHHHhh
Confidence            98887 5789999999999999998875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.77  E-value=5.7e-18  Score=121.41  Aligned_cols=102  Identities=25%  Similarity=0.603  Sum_probs=93.3

Q ss_pred             ceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         83 LVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        83 ~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      +..++.++|++.+. +++++|+||++||++|+.+.+.++++++.+++   +.|+.+|++.+..++++|+++++|++++++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   77 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYGVMSLPTVIFFK   77 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSCEEEEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCHHHHHhCCccccCEEEEEE
Confidence            45788999998884 45789999999999999999999999999875   999999999999999999999999999999


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|+...++.|..+.++|.+|+++.++
T Consensus        78 ~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           78 DGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             CCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            89988889999999999999998875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.77  E-value=7.6e-18  Score=121.65  Aligned_cols=101  Identities=18%  Similarity=0.395  Sum_probs=88.4

Q ss_pred             ceEc-ChhhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         83 LVEL-TEESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        83 ~~~l-~~~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +..+ +.++|++.+   .+++++|.||++||++|+.+.|.|+++++.+.   ++.|+.+|++.++.++++|+|+++|+++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4445 568898888   34578999999999999999999999999984   5999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++++|+...++.|. ..++|.+||++.++
T Consensus        80 ~~~~G~~~~~~~G~-~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           80 FFRNKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             EEECCeEEEEEeCC-CHHHHHHHHHHhcC
Confidence            99999988889995 45669999988753

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.77  E-value=8.8e-18  Score=121.74  Aligned_cols=100  Identities=23%  Similarity=0.478  Sum_probs=90.7

Q ss_pred             CceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         82 GLVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      .....+.++|++.+. +++++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|++.+..++++|+|+++|+++++
T Consensus         8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~---~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   84 (109)
T 3f3q_A            8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ---ADFYKLDVDELGDVAQKNEVSAMPTLLLF   84 (109)
T ss_dssp             CEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            455677899999885 45789999999999999999999999999864   99999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++|+.+.++.|. +.++|.++|+++
T Consensus        85 ~~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           85 KNGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            999998889998 779999999875

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.77  E-value=4.9e-18  Score=122.56  Aligned_cols=103  Identities=23%  Similarity=0.533  Sum_probs=91.9

Q ss_pred             CCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +.+..+++++|++.+  .+++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  ++++++++++.++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~P   76 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKE-FAG--KVTVAKVNIDD--NPETPNAYQVRSIP   76 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--SEEEEEEETTT--CCHHHHHTTCCSSS
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHH-hCC--cEEEEEEECCC--CHHHHHhcCCCccC
Confidence            458899999998765  346899999999999999999999999965 544  69999999998  88999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.
T Consensus        77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           77 TLMLVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEEEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            999999999888899999999999999875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.77  E-value=7.2e-18  Score=122.76  Aligned_cols=103  Identities=22%  Similarity=0.505  Sum_probs=93.5

Q ss_pred             CceEc-ChhhHHHHhc-----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         82 GLVEL-TEESFEKYVS-----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~~-----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      .+..+ +.++|++.+.     +++++|.||++||++|+.+.|.|++++..+.+  ++.|+.+|++.+..++++|+|+++|
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchHHHHHHcCCCccc
Confidence            46667 5788988874     56899999999999999999999999999986  7999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++++|+...++.|. +.++|.+||++.+.
T Consensus        81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            99999999988889998 99999999998764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.77  E-value=3.8e-18  Score=127.34  Aligned_cols=104  Identities=26%  Similarity=0.601  Sum_probs=92.5

Q ss_pred             CCeeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..|..++.++|++.+ . +++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++|+|.++|
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~P   96 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADE-YQG--KLTVAKLNIDQ--NPGTAPKYGIRGIP   96 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHH-TTT--TEEEEEEETTT--CCTTSGGGTCCSSS
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHH-hcC--CeEEEEEECCC--CHHHHHHcCCCccC
Confidence            458899999998654 3 46899999999999999999999999955 544  59999999998  88999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++++|++|+.+..+.|..+.+.|.+||++.+
T Consensus        97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           97 TLLLFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            9999999998888999999999999998875

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.77  E-value=8.4e-18  Score=126.96  Aligned_cols=106  Identities=28%  Similarity=0.530  Sum_probs=95.8

Q ss_pred             CCceEcChhhHHHHhc-------------CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh
Q psy14086         81 EGLVELTEESFEKYVS-------------LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ  147 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~-------------~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~  147 (324)
                      ..+..++.++|.+.+.             +++++|.||++||++|+.+.|.|.+++..+++  ++.|+.+|++.+..+++
T Consensus         9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~   86 (136)
T 2l5l_A            9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELAG   86 (136)
T ss_dssp             TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHH
T ss_pred             CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHH
Confidence            4688999999998874             35789999999999999999999999999987  79999999999999999


Q ss_pred             hCCccccceEEEE-eCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        148 SFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       148 ~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +|+|.++|+++++ .+|+.. .+.|..+.++|.+||++.+...
T Consensus        87 ~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~~  128 (136)
T 2l5l_A           87 AFGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLKK  128 (136)
T ss_dssp             HTTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTSC
T ss_pred             HcCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhcc
Confidence            9999999999999 567665 7899999999999999998754

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=3.5e-18  Score=128.46  Aligned_cols=110  Identities=29%  Similarity=0.690  Sum_probs=95.7

Q ss_pred             CCCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhc-CCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        208 PEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLD-NKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~-~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      ...+..+++++|++.+.  +++++|.||++||++|+.+.|.|.+++.++.. ...++.|+.+|++.  +.+++++|+|.+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~   83 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRG   83 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCe
Confidence            36799999999998763  45899999999999999999999999966431 11269999999998  899999999999


Q ss_pred             cceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +|++++|++|+.+..+.|..+.+.|.+||.+.+..
T Consensus        84 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           84 FPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             SSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             eCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhc
Confidence            99999999998888899999999999999988764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.77  E-value=4e-18  Score=125.98  Aligned_cols=106  Identities=29%  Similarity=0.590  Sum_probs=96.0

Q ss_pred             CCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         80 NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ...+..++.++|.+.+  .+++++|+||++||++|+.+.|.|.+++..+++  ++.|+.+|++.+..++++|+|.++|++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~   88 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNPETARNFQVVSIPTL   88 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            3468899999998765  345789999999999999999999999999977  799999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++|+...++.|..+.+.|.+||++.+.
T Consensus        89 ~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           89 ILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            999999988889999999999999987765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.77  E-value=6.8e-18  Score=122.76  Aligned_cols=103  Identities=18%  Similarity=0.502  Sum_probs=92.5

Q ss_pred             CCCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCCccccc
Q psy14086         80 NEGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFDIKSYP  155 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P  155 (324)
                      ...+..++.++|.+.+.   +++++|.||++||++|+.+.|.|++++..+++   +.|+.+|++ .+..++++|+|+++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC---eEEEEEecCcchHHHHHHcCCCeee
Confidence            34788999999999885   45789999999999999999999999999874   999999998 789999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++++++|+...++.|. +.++|.++|++.+
T Consensus        81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKENSVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEEEcCC-CHHHHHHHHHHhh
Confidence            99999899888888898 4899999998865

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.77  E-value=7e-19  Score=126.68  Aligned_cols=97  Identities=18%  Similarity=0.243  Sum_probs=76.8

Q ss_pred             ChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         87 TEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        87 ~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      +.++|++.+ .+++++|.||++||++|+.+.|.++++++.+.   ++.|+.+|++.++.++++|+|+++|+++++++|+.
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~   83 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKE   83 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------CCCCEEEEEETTEE
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeE
Confidence            345566665 44578999999999999999999999999984   59999999999999999999999999999999999


Q ss_pred             eeeecCCCCHHHHHHHHHhhh
Q psy14086        166 LDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       166 ~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ..++.|..+.++|.++|++++
T Consensus        84 ~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           84 ILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEESSCCHHHHHHHHHTTC
T ss_pred             EEEEeCCcCHHHHHHHHHHhh
Confidence            889999999999999998764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.77  E-value=2.2e-18  Score=127.54  Aligned_cols=106  Identities=29%  Similarity=0.566  Sum_probs=93.8

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +.+..++.++|.+.+  .+++++|.||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+..++++|+|+++|+++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK   80 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence            468899999996644  445789999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCC----CCHHHHHHHHHhhhCC
Q psy14086        159 WIESGKKLDKFQGS----RTLETLVNYVSKMKGP  188 (324)
Q Consensus       159 ~~~~g~~~~~~~g~----~~~~~i~~fi~~~~~~  188 (324)
                      ++++|+...++.|.    .+.+.|.+||.+.+..
T Consensus        81 ~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           81 LYQYERAKKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             EEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             EEeCCCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence            99876656667765    8999999999998863

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.77  E-value=1.9e-18  Score=124.34  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             cccccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086        215 TSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       215 ~~~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      +.++|++.+. +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +++++++|+|.++||+++|++
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~-~~---~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~   80 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLEN-YN---YVEKIEILLQD--MQEIAGRYAVFTGPTVLLFYN   80 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHT-CT---TEEEEEEEECC--C---------CCCCEEEEEET
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHH-cC---CceEEEEECCC--CHHHHHhcCCCCCCEEEEEeC
Confidence            3456777774 46899999999999999999999999965 32   69999999999  899999999999999999999


Q ss_pred             CeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        294 GVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       294 g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |+.+..+.|..+.+.|.++|++.+
T Consensus        81 G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           81 GKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             CeEEEEEeCCcCHHHHHHHHHHhh
Confidence            999888999999999999998765

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.77  E-value=3.3e-18  Score=123.07  Aligned_cols=102  Identities=26%  Similarity=0.579  Sum_probs=90.7

Q ss_pred             eeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       211 v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      |..+++++|++.+.+ ++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|+++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~-~~~--~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~   76 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEA-HAD--KVTVAKLNVDE--NPETTSQFGIMSIPTLI   76 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHH-STT--TCEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CcEEEEEECcC--CHHHHHHcCCccccEEE
Confidence            678899999877654 5899999999999999999999999955 444  59999999999  89999999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +|++|+.+..+.|..+.+.|.+||.+.+
T Consensus        77 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           77 LFKGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             EEeCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            9999998888999999999999998765

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.77  E-value=4.8e-18  Score=131.13  Aligned_cols=107  Identities=21%  Similarity=0.521  Sum_probs=95.7

Q ss_pred             CCCeeEecccccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +..+..+++++|++.+. +++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +++++++|+|.++|
T Consensus        46 ~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~-~~~--~v~~~~vd~~~--~~~l~~~~~i~~~P  120 (155)
T 2ppt_A           46 TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAAT-LAG--QVRLAKIDTQA--HPAVAGRHRIQGIP  120 (155)
T ss_dssp             CSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--TCEEEEEETTT--STHHHHHTTCCSSS
T ss_pred             CCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHH-ccC--CEEEEEEeCCc--cHHHHHHcCCCcCC
Confidence            46788999999998874 45899999999999999999999999966 444  59999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.++.
T Consensus       121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          121 AFILFHKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence            999999999888899999999999999998763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.77  E-value=5.8e-18  Score=129.79  Aligned_cols=108  Identities=22%  Similarity=0.495  Sum_probs=97.3

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ...+..+++++|++.+.. ++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +++++++|+|.++|
T Consensus        37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~-~~~--~~~~~~vd~~~--~~~l~~~~~v~~~P  111 (148)
T 3p2a_A           37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAE-RAG--KVRFVKVNTEA--EPALSTRFRIRSIP  111 (148)
T ss_dssp             CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHH-cCC--ceEEEEEECcC--CHHHHHHCCCCccC
Confidence            467999999999988854 5799999999999999999999999965 544  69999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.++..
T Consensus       112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  145 (148)
T 3p2a_A          112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRD  145 (148)
T ss_dssp             EEEEEETTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred             EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            9999999999888999999999999999987643

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.77  E-value=4.3e-18  Score=129.20  Aligned_cols=105  Identities=18%  Similarity=0.339  Sum_probs=94.4

Q ss_pred             CCeeEeccccccc-ccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFND-VIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~-~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..+..+++++|.+ +.. +++++|.||++||++|+.+.|.|.+++.+ +..  ++.|+.+|++.  +++++++|+|+++|
T Consensus         6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~P   80 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKE-YGS--SAVFGRINIAT--NPWTAEKYGVQGTP   80 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--TSEEEEEETTT--CHHHHHHHTCCEES
T ss_pred             cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHH-hCC--ceEEEEEECCc--CHhHHHHCCCCcCC
Confidence            6799999999994 443 45899999999999999999999999965 544  59999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.++
T Consensus        81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            99999999998889999999999999998875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.77  E-value=9.9e-19  Score=128.91  Aligned_cols=110  Identities=35%  Similarity=0.725  Sum_probs=95.8

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ++.+..++.++|++.+.+ ++++|.||++||++|+.+.|.+++++.++.....++.++.+|++.  ++++++++++.++|
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P   83 (120)
T 1mek_A            6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYP   83 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSS
T ss_pred             CCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC--CHHHHHHCCCCccc
Confidence            367999999999988754 579999999999999999999999996543323469999999998  88999999999999


Q ss_pred             eEEEEecCeee--eeecCCCCHHHHHHHHHhhccc
Q psy14086        287 SIYVYKNGVRT--AEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       287 ~l~~~~~g~~~--~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++++|++|+.+  ..+.|..+.+.|.+||++.++.
T Consensus        84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEEEeCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence            99999999866  7889999999999999988764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.77  E-value=7.4e-18  Score=123.25  Aligned_cols=106  Identities=19%  Similarity=0.438  Sum_probs=94.0

Q ss_pred             CCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..|..+++++|++.+  .+++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++|++.++|
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~v~~~~v~~~~--~~~~~~~~~v~~~P   81 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANT-YSD--RLKVVKLEIDP--NPTTVKKYKVEGVP   81 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHH-TTT--TCEEEEEESTT--CHHHHHHTTCCSSS
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHH-hCC--cEEEEEEEcCC--CHHHHHHcCCCcee
Confidence            569999999998765  346899999999999999999999999955 544  59999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++++|++|+.+..+.|..+.+.|.+||.+.++.
T Consensus        82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEcCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            999999999888899999999999999988753

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.77  E-value=6.1e-18  Score=123.18  Aligned_cols=105  Identities=21%  Similarity=0.494  Sum_probs=93.1

Q ss_pred             CCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..|..+++++|.+.+.  +++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  +++++++|++.++|
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~P   79 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAE-YGD--KIEIVKLNIDE--NPGTAAKYGVMSIP   79 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHH-hcC--CeEEEEEEcCC--CHHHHHhCCCCccc
Confidence            4688999999876553  45899999999999999999999999955 444  59999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ++++|++|+.+..+.|..+.+.+.+||.+.++
T Consensus        80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            99999999988889999999999999998764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.77  E-value=1.3e-17  Score=123.80  Aligned_cols=102  Identities=25%  Similarity=0.418  Sum_probs=92.9

Q ss_pred             CceEcCh-hhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTE-ESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~-~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      -+..++. ++|++.+. .++++|.||++||++|+.+.|.|.++++.+.   ++.|+.+|++.+..++++|+|.++|++++
T Consensus        20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i   96 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFII   96 (125)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            4788988 99998884 4578999999999999999999999999984   59999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|+...++.| .+.+.|.++|.+.+.
T Consensus        97 ~~~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           97 ARSGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EeCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence            999998888999 689999999998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=3.6e-18  Score=128.42  Aligned_cols=110  Identities=38%  Similarity=0.786  Sum_probs=93.5

Q ss_pred             CCCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ...|..+++++|++.+.  +++++|.||++||++|+.+.|.|++++.+ +....++.|+.+|++.  ++.++++|+|.++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~-~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~   82 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKK-YKGQKDLVIAKMDATA--NDITNDQYKVEGF   82 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHH-HTTSSSEEEEEECTTT--SCCCCSSCCCSSS
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHH-hcCCCCEEEEEecCCc--CHHHHhhcCCCcC
Confidence            46799999999998875  45899999999999999999999999966 4433369999999998  7888899999999


Q ss_pred             ceEEEEecCeee--eeec-CCCCHHHHHHHHHhhcccC
Q psy14086        286 PSIYVYKNGVRT--AEYN-GSRDLEELYQFILKHKVES  320 (324)
Q Consensus       286 P~l~~~~~g~~~--~~~~-g~~~~~~l~~fi~~~~~~~  320 (324)
                      ||+++|++|+.+  ..|. |..+.+.|.+||.+.++..
T Consensus        83 Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           83 PTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             SEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             CEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            999999887643  2577 5589999999999988743

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.76  E-value=1.2e-17  Score=121.63  Aligned_cols=103  Identities=22%  Similarity=0.489  Sum_probs=93.1

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      .+....++.++|++.+++ ++++|+||++||++|+.+.|.+.++++.+.+   +.|+.+|++.+..++++|+|.++|+++
T Consensus         8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             -CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             eeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            346788999999998854 4679999999999999999999999999864   999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++++|+...++.|. +.++|.+||++.+
T Consensus        85 ~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           85 VYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            99999988889999 9999999998764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.76  E-value=6.7e-18  Score=124.43  Aligned_cols=105  Identities=30%  Similarity=0.518  Sum_probs=93.5

Q ss_pred             CCCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      .+.+..+++++|.+.+.  +++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  +.+++++|+|.++
T Consensus        12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~-~~~--~v~~~~vd~d~--~~~l~~~~~v~~~   86 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAK-QHG--KVVMAKVDIDD--HTDLAIEYEVSAV   86 (119)
T ss_dssp             CSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--SSEEEEEETTT--THHHHHHTTCCSS
T ss_pred             ceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CeEEEEEeCCC--CHHHHHHcCCCcc
Confidence            46799999999988653  35899999999999999999999999955 444  69999999998  8899999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |++++|++|+.+..+.|..+.+.|.+||++.+
T Consensus        87 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           87 PTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            99999999998888999999999999998875

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.76  E-value=6e-18  Score=137.51  Aligned_cols=107  Identities=32%  Similarity=0.666  Sum_probs=98.9

Q ss_pred             CCCceEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         80 NEGLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ...+..++.++|...+ ..++++|.||++||++|+.+.|.|.++++.+.+  ++.|+.||++.+..++++|+|.++|+++
T Consensus        96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  173 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSLF  173 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccHHHHHHcCCCcCCeEE
Confidence            3468899999999887 556899999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ++++|+...++.|..+.++|.+||.+.+..
T Consensus       174 ~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~  203 (210)
T 3apq_A          174 IFRSGMAAVKYNGDRSKESLVAFAMQHVRS  203 (210)
T ss_dssp             EECTTSCCEECCSCCCHHHHHHHHHHHHHC
T ss_pred             EEECCCceeEecCCCCHHHHHHHHHHhCcc
Confidence            998898888899999999999999999874

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.76  E-value=2.9e-18  Score=125.73  Aligned_cols=102  Identities=23%  Similarity=0.477  Sum_probs=90.4

Q ss_pred             CCeeEecccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        209 EPVVSLTSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ......+.++|++.+.   +++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  +++++++|+|.++
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~---~v~~~~vd~d~--~~~l~~~~~v~~~   85 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEK-YS---NVIFLEVDVDD--CQDVASECEVKSM   85 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTT-CT---TSEEEEEETTT--THHHHHHTTCCSS
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-CC---CCEEEEEECCC--CHHHHHHcCCccc
Confidence            4567777888999886   46899999999999999999999999954 43   39999999999  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |++++|++|+.+..+.|. +.+.|.++|++.+
T Consensus        86 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           86 PTFQFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             SEEEEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             cEEEEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            999999999988889998 9999999998764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.76  E-value=2e-18  Score=127.24  Aligned_cols=108  Identities=30%  Similarity=0.739  Sum_probs=96.8

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceE
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ...+..++.++|++.+.+ ++++|+||++||++|+.+.|.|.++++.+++. .++.|+.+|++.+..++++|+|+++|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (120)
T 1mek_A            6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEE
Confidence            356889999999988744 46899999999999999999999999998753 3699999999999999999999999999


Q ss_pred             EEEeCCeEe--eeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIESGKKL--DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~g~~~--~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++|+..  .+|.|..+.+.|.+||++.++
T Consensus        86 ~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            999988866  789999999999999998876

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.76  E-value=6.7e-18  Score=121.86  Aligned_cols=103  Identities=24%  Similarity=0.547  Sum_probs=91.4

Q ss_pred             CeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      .|..+++++|++.+.  +++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|+
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~Pt   76 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGE-YKD--KLKCVKLNTDE--SPNVASEYGIRSIPT   76 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHHTCCSSCE
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHH-hCC--ceEEEEEECCC--CHHHHHHCCCCcCCE
Confidence            377889999988663  45899999999999999999999999955 444  59999999998  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +++|++|+.+..+.|..+.+.+.++|++.+
T Consensus        77 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           77 IMVFKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EEEESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999988888999999999999998875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.76  E-value=6.4e-18  Score=122.28  Aligned_cols=105  Identities=23%  Similarity=0.503  Sum_probs=92.7

Q ss_pred             CeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        210 PVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      .+..+++++|++.+.. ++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  +++++++|++.++|++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~Pt~   76 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKE-YEG--KLLVAKLDVDE--NPKTAMRYRVMSIPTV   76 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-TBT--TBEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHH-hhC--ceEEEEEECCC--CHhHHHhCCCCcCCEE
Confidence            4778999999977754 5899999999999999999999999955 544  59999999999  8999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++|++|+.+..+.|..+.+.|.+||.+.++.
T Consensus        77 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           77 ILFKDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             EEEeCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            9999999888899999999999999988763

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.76  E-value=1.3e-17  Score=136.64  Aligned_cols=110  Identities=25%  Similarity=0.561  Sum_probs=100.7

Q ss_pred             CCCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         78 IVNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      .....+..+|.++|++.+  ..++++|.||++||++|+.+.|.|.++++.+++  ++.|+.||++.++.++++|+|.++|
T Consensus         9 ~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~P   86 (222)
T 3dxb_A            9 PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIP   86 (222)
T ss_dssp             CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCTTTGGGGTCCSBS
T ss_pred             CCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCHHHHHHcCCCcCC
Confidence            345678999999999864  455789999999999999999999999999987  7999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +++++++|+...++.|..+.+.|.+||++.+.+.
T Consensus        87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           87 TLLLFKNGEVAATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred             EEEEEECCeEEEEeccccChHHHHHHHHhhcccc
Confidence            9999999999889999999999999999998754

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.76  E-value=1.5e-17  Score=119.71  Aligned_cols=100  Identities=23%  Similarity=0.589  Sum_probs=89.7

Q ss_pred             ceEcCh-hhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         83 LVELTE-ESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        83 ~~~l~~-~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +..++. ++|.+.+.   +++++|.||++||++|+.+.|.++++++.+++  ++.|+.+|++.+..++++|+++++|+++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            456776 88888774   45689999999999999999999999999975  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++++|+...++.| .+.++|.+||++.
T Consensus        80 ~~~~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           80 FLKNGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             EEcCCcEEEEEcC-CCHHHHHHHHHHh
Confidence            9999998888999 6899999999875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.4e-17  Score=121.25  Aligned_cols=103  Identities=21%  Similarity=0.454  Sum_probs=88.4

Q ss_pred             ceEcCh-hhHHHHhc----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         83 LVELTE-ESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        83 ~~~l~~-~~f~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      +..++. ++|++.+.    +++++|.||++||++|+.+.|.|+++++.++.. ++.|+.+|++.++.++++|+|+++|++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT-TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC-CEEEEEEecccCHHHHHHcCCCcccEE
Confidence            567776 89998886    467899999999999999999999999996321 599999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++|+...++.|. ..++|.++|.+.+.
T Consensus        81 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           81 IIIHKGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             EEEETTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            999999988889998 45679999988764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=1.1e-17  Score=125.22  Aligned_cols=108  Identities=32%  Similarity=0.720  Sum_probs=94.2

Q ss_pred             CCCCeeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        207 KPEPVVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      ....+..++.++|++.+ . +++++|.||++||++|+.+.|.|++++.+ +..  .+.|+.+|++.  +.+++++|+|.+
T Consensus        15 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~-~~~--~~~~~~vd~~~--~~~l~~~~~v~~   89 (130)
T 2dml_A           15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA-LKD--VVKVGAVNADK--HQSLGGQYGVQG   89 (130)
T ss_dssp             TTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHH-TTT--TSEEEEEETTT--CHHHHHHHTCCS
T ss_pred             CCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHH-hcC--ceEEEEEeCCC--CHHHHHHcCCCc
Confidence            44679999999999855 3 45899999999999999999999999965 444  59999999999  899999999999


Q ss_pred             cceEEEEecCee-eeeecCCCCHHHHHHHHHhhccc
Q psy14086        285 FPSIYVYKNGVR-TAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       285 ~P~l~~~~~g~~-~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +|++++|++|+. +..+.|..+.+.|.+||.+.+..
T Consensus        90 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~  125 (130)
T 2dml_A           90 FPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS  125 (130)
T ss_dssp             SSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhc
Confidence            999999987765 67889999999999999988753

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.76  E-value=5.8e-18  Score=128.68  Aligned_cols=109  Identities=27%  Similarity=0.458  Sum_probs=90.8

Q ss_pred             CCCCCeeEecccccccccc-------------CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc
Q psy14086        206 VKPEPVVSLTSENFNDVIK-------------SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL  272 (324)
Q Consensus       206 ~~~~~v~~l~~~~~~~~~~-------------~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~  272 (324)
                      ..+..+..++..+|+..+.             +++++|.||++||++|+.+.|.|.+++.+ +..  ++.++.+|++.  
T Consensus        19 ~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--   93 (141)
T 3hxs_A           19 KPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKE-YAG--KIYIYKVNVDK--   93 (141)
T ss_dssp             ----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--
T ss_pred             CCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--ceEEEEEECCC--
Confidence            4456799999999987764             35799999999999999999999999965 544  69999999999  


Q ss_pred             chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       273 ~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++++++.|+|.++|++++|..++.+..+.|..+.+.|.+||.+.+..
T Consensus        94 ~~~~~~~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A           94 EPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             CHHHHHHTTCCSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTTC-
T ss_pred             CHHHHHHcCCCCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            89999999999999999995443434789999999999999988753

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.75  E-value=1.8e-17  Score=119.17  Aligned_cols=96  Identities=23%  Similarity=0.566  Sum_probs=87.7

Q ss_pred             ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      +.++|++.+.   +++++|.||++||++|+.+.|.++++++.+++   +.|+.+|++.++.++++|+++++|+++++++|
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASESEVKSMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---SEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC---eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC
Confidence            5677887774   55789999999999999999999999999865   99999999999999999999999999999999


Q ss_pred             eEeeeecCCCCHHHHHHHHHhhh
Q psy14086        164 KKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       164 ~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +...++.|. +.++|.++|++.+
T Consensus        84 ~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           84 QKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEEEEESS-CHHHHHHHHHHHC
T ss_pred             eEEEEEeCC-CHHHHHHHHHHhC
Confidence            998899999 9999999998753

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.75  E-value=1.1e-17  Score=124.18  Aligned_cols=103  Identities=22%  Similarity=0.380  Sum_probs=91.8

Q ss_pred             CeeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      -+..|++ ++|++.+.. ++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  +++++++|+|.++|+
T Consensus        20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~-~~---~v~~~~vd~d~--~~~l~~~~~v~~~Pt   93 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE-FP---TVKFAKVDADN--NSEIVSKCRVLQLPT   93 (125)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHH-CC---CCEEEEEECCC--CHHHHHHcCCCcccE
Confidence            4889998 889988854 5899999999999999999999999965 42   59999999998  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +++|++|+.+..+.| .+.+.|.++|.+.++.
T Consensus        94 ~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           94 FIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             EEEEETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             EEEEeCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence            999999998888899 6889999999988753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.75  E-value=8.8e-18  Score=122.35  Aligned_cols=103  Identities=17%  Similarity=0.398  Sum_probs=87.2

Q ss_pred             eeEecc-cccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        211 VVSLTS-ENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       211 v~~l~~-~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      |..++. ++|++.+.    +++++|.||++||++|+.+.|.+++++.++...  ++.|+.+|++.  +++++++|++.++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--~~~~~~vd~~~--~~~~~~~~~v~~~   77 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS--NVSFLSIDADE--NSEISELFEISAV   77 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT--TSEEEEEETTT--CHHHHHHTTCCSS
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC--CEEEEEEeccc--CHHHHHHcCCCcc
Confidence            677887 78988886    458999999999999999999999999653233  59999999998  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |++++|++|+.+..+.|. ..++|.++|.+.++
T Consensus        78 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           78 PYFIIIHKGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             SEEEEEETTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             cEEEEEECCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            999999999988888997 55679999988765

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.75  E-value=1.2e-17  Score=120.49  Aligned_cols=100  Identities=26%  Similarity=0.479  Sum_probs=85.9

Q ss_pred             eeEe-ccccccccc---cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        211 VVSL-TSENFNDVI---KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       211 v~~l-~~~~~~~~~---~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +..+ +.++|++.+   .+++++|.||++||++|+.+.|.+++++.+ + .  ++.|+.+|++.  +++++++|++.++|
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~-~-~--~~~~~~vd~~~--~~~~~~~~~v~~~P   76 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNK-Y-P--QAVFLEVDVHQ--CQGTAATNNISATP   76 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHH-C-T--TSEEEEEETTT--SHHHHHHTTCCSSS
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHH-C-C--CcEEEEEECcc--CHHHHHhcCCCccc
Confidence            4555 456788887   346899999999999999999999999966 3 2  69999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |+++|++|+.+..+.|. +.++|.+||++.+
T Consensus        77 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           77 TFQFFRNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEECCeEEEEEeCC-CHHHHHHHHHHhc
Confidence            99999999988888995 5566999998875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.75  E-value=6e-18  Score=127.54  Aligned_cols=104  Identities=20%  Similarity=0.335  Sum_probs=94.8

Q ss_pred             CCceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------ccchhhhhhCCc
Q psy14086         81 EGLVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------TQHRSICQSFDI  151 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------~~~~~~~~~~~i  151 (324)
                      ..+..++.++|++.+.. +++|.||++||++|+.+.|.|.++++.++    +.|+.+|+         +.+..++++|+|
T Consensus        16 ~~v~~l~~~~~~~~~~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~~~~v   90 (135)
T 3emx_A           16 GRLIYITPEEFRQLLQG-DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMNKAGV   90 (135)
T ss_dssp             TEEEECCHHHHHHHHTS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred             CceeecCHHHHHHHhCC-cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence            36788999999999977 99999999999999999999999999874    88999999         888999999999


Q ss_pred             cccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        152 KSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       152 ~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      .++|+++++++|+...++.|..+.+.+.+++++.+.+.
T Consensus        91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999998753

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.75  E-value=2.2e-18  Score=127.64  Aligned_cols=104  Identities=27%  Similarity=0.604  Sum_probs=88.5

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCH--------------hHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCG--------------HCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS  144 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~--------------~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~  144 (324)
                      +.+..++.++|++.+  .+++++|.||++||+              +|+.+.|.|+++++.+.+  ++.|+.+|++.+..
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCHH
Confidence            357889999998765  345789999999999              999999999999999987  79999999999999


Q ss_pred             hhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       145 ~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++++|+|+++|+++++++|+...++.|..+.++|.+||++.+
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999999999999999998888999999999999998764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.75  E-value=9.1e-18  Score=124.04  Aligned_cols=105  Identities=42%  Similarity=0.881  Sum_probs=89.0

Q ss_pred             CCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC---CCCeEEEEEecCCccchhhhhhcCC
Q psy14086        208 PEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN---KHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~---~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      ...|..+++++|++.+  .+++++|.||++||++|+.+.|.|++++.+ +..   ..++.|+.+|++.  ++ +++  +|
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~-~~~~~~~~~v~~~~vd~~~--~~-~~~--~v   79 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGAL-YAKSEFKDRVVIAKVDATA--ND-VPD--EI   79 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHH-HTTSSCTTSSEEEEEETTT--SC-CSS--CC
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHH-HhhcccCCceEEEEEECcc--cc-ccc--cc
Confidence            4679999999999886  346899999999999999999999999966 433   2369999999988  44 555  99


Q ss_pred             CccceEEEEecCee--eeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVYKNGVR--TAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~~~g~~--~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++||+++|++|+.  +..+.|.++.+.|.+||.++++
T Consensus        80 ~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           80 QGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             SSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence            99999999988754  6678999999999999998865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.75  E-value=1.4e-17  Score=126.45  Aligned_cols=106  Identities=25%  Similarity=0.526  Sum_probs=83.8

Q ss_pred             CCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         81 EGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ..+..++.++|...+.+ +.++|+||++||++|+.+.|.|++++..+.+  ++.|+.+|++.+..++++|+|.++|++++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAARYGVRSVPTLVL  110 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHCCCCccCEEEE
Confidence            46788999999988633 3489999999999999999999999999987  79999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      |++|+...++.|..+.++|.+||.+.+.+
T Consensus       111 ~~~G~~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          111 FRRGAPVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             EeCCcEEEEEeCCCCHHHHHHHHHHHHcc
Confidence            99999888899999999999999998863

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.75  E-value=1.4e-17  Score=121.02  Aligned_cols=103  Identities=24%  Similarity=0.551  Sum_probs=90.6

Q ss_pred             CCCeeEecccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcCCC
Q psy14086        208 PEPVVSLTSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEGVD  283 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~i~  283 (324)
                      .+.|..++.++|++.+.   +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++ .  +.+++++|+++
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~-~~---~v~~~~vd~~~~--~~~~~~~~~v~   77 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEE-YL---DVIFLKLDCNQE--NKTLAKELGIR   77 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSST--THHHHHHHCCS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHH-CC---CeEEEEEecCcc--hHHHHHHcCCC
Confidence            36799999999998885   35899999999999999999999999955 43   4899999998 5  78999999999


Q ss_pred             ccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        284 GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++|+++++++|+.+..+.|. +.++|.++|.+.+
T Consensus        78 ~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           78 VVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             BSSEEEEESSSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred             eeeEEEEEeCCcEEEEEcCC-CHHHHHHHHHHhh
Confidence            99999999999988888897 5899999998764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.75  E-value=8.6e-18  Score=130.60  Aligned_cols=108  Identities=14%  Similarity=0.238  Sum_probs=90.9

Q ss_pred             CCeeEeccccccccccC---CcEEEEEeC-------CCChhhhhhhHhHHHHHHHhhcC--CCCeEEEEEecCCccchhh
Q psy14086        209 EPVVSLTSENFNDVIKS---GTVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDN--KHGIVIAKVDCTQELSKDL  276 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~---~~~~v~f~~-------~~c~~C~~~~~~~~~~a~~~~~~--~~~~~~~~id~~~~~~~~~  276 (324)
                      ..|..|++++|++++.+   .+++|+||+       +||++|+.+.|.|+++|.++...  ..++.|+++|++.  ++++
T Consensus        18 ~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~--~~~l   95 (178)
T 3ga4_A           18 TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE--VPQL   95 (178)
T ss_dssp             TSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT--CHHH
T ss_pred             CCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc--CHHH
Confidence            56999999999998853   269999999       49999999999999999775311  1369999999999  9999


Q ss_pred             hhhcCCCccceEEEEecCeee------------eee---cC-CCCHHHHHHHHHhhcc
Q psy14086        277 CNQEGVDGFPSIYVYKNGVRT------------AEY---NG-SRDLEELYQFILKHKV  318 (324)
Q Consensus       277 ~~~~~i~~~P~l~~~~~g~~~------------~~~---~g-~~~~~~l~~fi~~~~~  318 (324)
                      +.+|+|+++|||++|++|...            ..|   .| .++.+.|.+||.+.++
T Consensus        96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~  153 (178)
T 3ga4_A           96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN  153 (178)
T ss_dssp             HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence            999999999999999887432            234   35 7899999999998876

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.75  E-value=3.7e-17  Score=120.94  Aligned_cols=103  Identities=26%  Similarity=0.519  Sum_probs=93.8

Q ss_pred             CCceEcChhhHHHHhc-----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         81 EGLVELTEESFEKYVS-----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~-----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ..+..++.++|++.+.     +++++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|++.+..++++|+|+++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~P   89 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAMP   89 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---cEEEEEECCCCHHHHHHcCCCccc
Confidence            3567789999998773     46789999999999999999999999999875   999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++++|+...++.|.. .++|.+||++.+.
T Consensus        90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            999999999888899998 9999999999875

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.75  E-value=6.5e-18  Score=122.64  Aligned_cols=102  Identities=21%  Similarity=0.389  Sum_probs=90.0

Q ss_pred             ceEcChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086         83 LVELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  162 (324)
                      +..++.++|+...+.++++|.||++||++|+.+.|.|++++..+.   ++.|+.+|++.+..++++|+|+++|++++|++
T Consensus         5 ~~~~~~~~f~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   81 (110)
T 2l6c_A            5 RDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFIRD   81 (110)
T ss_dssp             SBCGGGCSHHHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred             eecCCHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence            456778889444456678999999999999999999999999875   49999999999999999999999999999999


Q ss_pred             CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        163 GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       163 g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |+...++.|..+.++|.+++....+
T Consensus        82 G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           82 GKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             SSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            9999899999999999999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=9.9e-18  Score=143.00  Aligned_cols=105  Identities=23%  Similarity=0.531  Sum_probs=98.1

Q ss_pred             CCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         81 EGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ..+.++|.++|++.+.   +++++|.||++||++|+.+.|.|.++++++.+  ++.|+.||++.++.++++|+|+++||+
T Consensus         7 ~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             TTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            4689999999999884   46899999999999999999999999999987  799999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++|+.+.++.|..+.+.+.+|+...+.
T Consensus        85 ~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           85 YLFQNGQPVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             EEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            999999999899999999999999998864

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.75  E-value=1.4e-17  Score=127.47  Aligned_cols=101  Identities=17%  Similarity=0.275  Sum_probs=91.7

Q ss_pred             cChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC
Q psy14086         86 LTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        86 l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~  162 (324)
                      .+.++|++.+.   +++++|.||++||++|+.+.|.|+++++++.+  ++.|+.||+++++.++++|+|.++|+++++++
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~   86 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN   86 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence            46788988873   45789999999999999999999999999977  79999999999999999999999999999999


Q ss_pred             CeEe---------eeecC-CCCHHHHHHHHHhhhCC
Q psy14086        163 GKKL---------DKFQG-SRTLETLVNYVSKMKGP  188 (324)
Q Consensus       163 g~~~---------~~~~g-~~~~~~i~~fi~~~~~~  188 (324)
                      |+.+         .++.| ..+.++|.++|+....+
T Consensus        87 G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~  122 (149)
T 3gix_A           87 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG  122 (149)
T ss_dssp             TEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred             CeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence            9988         78999 89999999999988653

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.75  E-value=1.8e-17  Score=119.11  Aligned_cols=102  Identities=25%  Similarity=0.535  Sum_probs=90.2

Q ss_pred             eeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      |..+++++|++.+.  +++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~Pt~   76 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKE-YSG--KIAVYKLNTDE--APGIATQYNIRSIPTV   76 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHH-hcC--ceEEEEEcCcc--hHHHHHhCCCCcccEE
Confidence            67788899988663  45899999999999999999999999955 444  59999999998  8999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++|++|+.+..+.|..+.+.+.++|++.+
T Consensus        77 ~~~~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           77 LFFKNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            99999998888999999999999998763

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.75  E-value=4.3e-17  Score=120.90  Aligned_cols=103  Identities=27%  Similarity=0.558  Sum_probs=91.4

Q ss_pred             CCCceEc-ChhhHHHHhc-----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc
Q psy14086         80 NEGLVEL-TEESFEKYVS-----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS  153 (324)
Q Consensus        80 ~~~~~~l-~~~~f~~~~~-----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~  153 (324)
                      ...+..+ +.++|++.+.     +++++|.||++||++|+.+.|.|++++.++.   ++.|+.+|++.+..++++|+|++
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCc
Confidence            3457777 6788888773     4578999999999999999999999999986   49999999999999999999999


Q ss_pred             cceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        154 YPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       154 ~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +|+++++++|+...++.| .+.++|.++|++.+
T Consensus        92 ~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           92 MPTFMFLKEGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SSEEEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             cCEEEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence            999999999998888889 48999999998865

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.75  E-value=1.4e-17  Score=119.41  Aligned_cols=102  Identities=28%  Similarity=0.508  Sum_probs=90.8

Q ss_pred             eeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       211 v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      |..++.++|++.+.. ++++|.||++||++|+.+.|.+++++.+ +..   +.++.+|++.  ++++++.+++.++|+++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~---~~~~~v~~~~--~~~~~~~~~v~~~Pt~~   74 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAED-YPQ---VGFGKLNSDE--NPDIAARYGVMSLPTVI   74 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHH-CTT---SEEEEEETTT--CHHHHHHTTCCSSCEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHH-cCC---ceEEEEECCC--CHHHHHhCCccccCEEE
Confidence            457888899888754 5899999999999999999999999955 433   9999999998  89999999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +|++|+.+..+.|..+.+.+.+||.+.++
T Consensus        75 ~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           75 FFKDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            99999988889999999999999998865

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.74  E-value=8.4e-18  Score=143.62  Aligned_cols=111  Identities=32%  Similarity=0.697  Sum_probs=96.0

Q ss_pred             CCCCCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086        206 VKPEPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD  283 (324)
Q Consensus       206 ~~~~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~  283 (324)
                      ..+..|..|+.++|++.+.  +++++|.||++||++|+.+.|.|++++.+ +..  .+.++.+|++...+.++++.|+|.
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~-~~~--~~~~~~v~~d~~~~~~l~~~~~I~   90 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKR-LDG--VVQVAAVNCDLNKNKALCAKYDVN   90 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-ccC--CcEEEEEEccCccCHHHHHhCCCC
Confidence            3457899999999999984  35799999999999999999999999965 444  588999998843378999999999


Q ss_pred             ccceEEEEecCe-----------------eeeeecCCCCHHHHHHHHHhhccc
Q psy14086        284 GFPSIYVYKNGV-----------------RTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       284 ~~P~l~~~~~g~-----------------~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++||+++|++|+                 ....|.|.++.+.|.+||.+.++.
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~  143 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRS  143 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCC
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhccc
Confidence            999999999886                 356899999999999999988753

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.74  E-value=1.7e-17  Score=120.78  Aligned_cols=104  Identities=25%  Similarity=0.601  Sum_probs=91.0

Q ss_pred             CCeeEec-ccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSLT-SENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l~-~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      +.+..++ .++|++.+.     +++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +.+++++|++
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v   76 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSND-YAG--KVIFLKVDVDA--VAAVAEAAGI   76 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTT--THHHHHHHTC
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHH-cCC--CeEEEEEECCc--hHHHHHHcCC
Confidence            3577774 577888775     56899999999999999999999999955 543  69999999998  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .++|++++|++|+.+..+.|. +.+.|.+||.+.++
T Consensus        77 ~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           77 TAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             CBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             CcccEEEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            999999999999988889998 99999999998764

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.74  E-value=2.6e-16  Score=131.39  Aligned_cols=204  Identities=14%  Similarity=0.169  Sum_probs=156.2

Q ss_pred             CceEcC-hhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELT-EESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~-~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..|+ .+.+++++.. ..++|.|+++||.   ...+.|.++|..+++  .+.|+.+.   +..+++++++.. |++++
T Consensus         7 ~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~---~~~~~f~~~A~~lr~--~~~F~~~~---~~~v~~~~~~~~-p~i~~   77 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFISDKDASIVGFFDDSFS---EAHSEFLKAASNLRD--NYRFAHTN---VESLVNEYDDNG-EGIIL   77 (252)
T ss_dssp             CEEECCSHHHHHHHHTSSSCEEEEEESCTTS---HHHHHHHHHHHHTTT--TSCEEEEC---CHHHHHHHCSSS-EEEEE
T ss_pred             CceeecCHHHHHHHhhcCCeEEEEEECCCCC---hHHHHHHHHHHhccc--CcEEEEEC---hHHHHHHhCCCC-CcEEE
Confidence            678884 6677787754 4678999999854   467899999999988  78888663   467999999996 99999


Q ss_pred             EeCC-------eEeeee-cCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEEEE
Q psy14086        160 IESG-------KKLDKF-QGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVFIK  231 (324)
Q Consensus       160 ~~~g-------~~~~~~-~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~v~  231 (324)
                      |+++       +....| .|.++.++|.+||....-                     +.|.++|.+++..+ .+.+.+|.
T Consensus        78 fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~---------------------Plv~e~t~~n~~~~-~~~~~~v~  135 (252)
T 2h8l_A           78 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF---------------------GICPHMTEDNKDLI-QGKDLLIA  135 (252)
T ss_dssp             ECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS---------------------CSSCEECTTTHHHH-SSSSEEEE
T ss_pred             EcchhhcccccccccccCCCCcCHHHHHHHHHhccc---------------------CCeeecccccHhhh-cCCCeEEE
Confidence            9863       344568 899999999999999876                     56999999998886 45666667


Q ss_pred             EeCCCChh---h-hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC----CccceEEEEecCeeeeeecCC
Q psy14086        232 FFAPWCGH---C-KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV----DGFPSIYVYKNGVRTAEYNGS  303 (324)
Q Consensus       232 f~~~~c~~---C-~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i----~~~P~l~~~~~g~~~~~~~g~  303 (324)
                      |+...+..   | ......+.++|+++......+.|+++|++.  ...+.+.||+    ..+|+++++...+....+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~--~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~~~~  213 (252)
T 2h8l_A          136 YYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKT--FSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEE  213 (252)
T ss_dssp             EECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTT--THHHHGGGTCCCCSCSSCEEEEECTTSCEEECCSC
T ss_pred             EeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHH--HHHHHHHcCCCCccCCCCEEEEEeCcCcEecCCcc
Confidence            77543321   1 246778888997754323359999999987  7778899999    369999998543333356778


Q ss_pred             CCHHH--HHHHHHhhcc
Q psy14086        304 RDLEE--LYQFILKHKV  318 (324)
Q Consensus       304 ~~~~~--l~~fi~~~~~  318 (324)
                      .+.+.  |.+|+++.+.
T Consensus       214 ~t~~~~~i~~F~~~~~~  230 (252)
T 2h8l_A          214 FSRDGKALERFLQDYFD  230 (252)
T ss_dssp             CCTTSHHHHHHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHC
Confidence            88888  9999999764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.74  E-value=3.9e-17  Score=117.09  Aligned_cols=99  Identities=29%  Similarity=0.617  Sum_probs=88.1

Q ss_pred             eEcCh-hhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         84 VELTE-ESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        84 ~~l~~-~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ..++. ++|++.+.   +++++|.||++||++|+.+.+.+.+++..+.   ++.|+.+|++.++.++++|++.++|++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            45655 88888775   4578999999999999999999999999986   49999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++|+...++.| .+.++|.+||++++
T Consensus        79 ~~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            999998888999 68999999998753

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=3.6e-18  Score=128.46  Aligned_cols=110  Identities=30%  Similarity=0.680  Sum_probs=95.6

Q ss_pred             CCCceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         80 NEGLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      ...+..++.++|+..+.  .++++|+||++||++|+.+.|.|.++++.+++..++.|+.+|++.+..++++|+|+++|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI   85 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence            45789999999988774  4578999999999999999999999999998544799999999999999999999999999


Q ss_pred             EEEeCCeEe--eeec-CCCCHHHHHHHHHhhhCCC
Q psy14086        158 LWIESGKKL--DKFQ-GSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       158 ~~~~~g~~~--~~~~-g~~~~~~i~~fi~~~~~~~  189 (324)
                      ++|++|+..  ..|. |..+.++|.+||.+.+...
T Consensus        86 ~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           86 YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             EEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            999887533  3577 5589999999999998754

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.74  E-value=3e-17  Score=119.89  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             CceEcChhhHHHHhcC-C---CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVELTEESFEKYVSL-G---NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~-~---~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+.+++.++|.+.+.+ +   +++|.||++||++|+.+.|.++++++++.   .+.|++||+++.   +++|+|+++||+
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~---~~~~~v~~~PT~   77 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC---IQHYHDNCLPTI   77 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT---STTCCGGGCSEE
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HHHCCCCCCCEE
Confidence            5788999999987732 2   68999999999999999999999999986   499999999875   589999999999


Q ss_pred             EEEeCCeEeeeecCC-------CCHHHHHHHHHhh
Q psy14086        158 LWIESGKKLDKFQGS-------RTLETLVNYVSKM  185 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~-------~~~~~i~~fi~~~  185 (324)
                      ++|++|+.+.++.|.       .+.++|..+|.+.
T Consensus        78 ~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           78 FVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999999999888875       4789999998763

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.74  E-value=2.3e-17  Score=124.49  Aligned_cols=106  Identities=28%  Similarity=0.499  Sum_probs=92.9

Q ss_pred             CCCeeEecccccccccc-------------CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch
Q psy14086        208 PEPVVSLTSENFNDVIK-------------SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK  274 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~-------------~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~  274 (324)
                      ...+..++.++|.+.+.             +++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +.
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~-~~~--~v~~~~vd~~~--~~   82 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE-YDG--QIVIYKVDTEK--EQ   82 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHH-hcC--CEEEEEEeCCC--CH
Confidence            35789999999988664             35899999999999999999999999955 544  59999999999  89


Q ss_pred             hhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        275 DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       275 ~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +++++|+|.++|++++| ++|+.+ .+.|..+.+.|.+||.+.++.
T Consensus        83 ~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           83 ELAGAFGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HHHHHTTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999 778776 788999999999999988764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.74  E-value=1.4e-17  Score=122.98  Aligned_cols=106  Identities=23%  Similarity=0.485  Sum_probs=93.4

Q ss_pred             CCCeeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ...+..++.++|.+.+ . +++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++++|.++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~i~~~   85 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RAT--DLTVAKLDVDT--NPETARNFQVVSI   85 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHTTCCSS
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CeEEEEEECCC--CHHHHHhcCCCcC
Confidence            4678999999998655 3 45899999999999999999999999955 444  59999999998  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |++++|++|+.+..+.|..+.+.|.+||.+.++
T Consensus        86 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           86 PTLILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             CEEEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            999999999988889999999999999988765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.74  E-value=4.3e-17  Score=120.98  Aligned_cols=102  Identities=20%  Similarity=0.559  Sum_probs=91.8

Q ss_pred             CCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCCccccce
Q psy14086         81 EGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~  156 (324)
                      ..+..++.++|.+.+.   +++++|.||++||++|+.+.|.++++++++++   +.|+.+|++ .+..++++|+|+++|+
T Consensus        18 ~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~~v~~~Pt   94 (124)
T 1faa_A           18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPT   94 (124)
T ss_dssp             TSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             CceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC---CEEEEEecCcchHHHHHHcCCCeeeE
Confidence            4688999999988774   45789999999999999999999999999874   999999998 6889999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++++++|+...++.|.. .++|.++|++..
T Consensus        95 ~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           95 FKILKENSVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             EEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            99999999888889986 899999998764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.74  E-value=9.2e-18  Score=124.22  Aligned_cols=107  Identities=26%  Similarity=0.605  Sum_probs=91.5

Q ss_pred             CCeeEeccccccc-ccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFND-VIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~-~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +.+..++.++|.+ +.. +++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +++++++|+|.++|
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~P   77 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARM-IKG--KVRAGKVDCQA--YPQTCQKAGIKAYP   77 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--TCEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-hcC--CeEEEEEeCcC--CHHHHHHcCCCccc
Confidence            5688999999965 443 35899999999999999999999999965 544  69999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCC----CCHHHHHHHHHhhcccC
Q psy14086        287 SIYVYKNGVRTAEYNGS----RDLEELYQFILKHKVES  320 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~----~~~~~l~~fi~~~~~~~  320 (324)
                      ++++|+.|+.+..+.|.    .+.+.|.+||.+.++..
T Consensus        78 t~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~  115 (122)
T 3aps_A           78 SVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETL  115 (122)
T ss_dssp             EEEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred             eEEEEeCCCccceeeccccCcCCHHHHHHHHHHHHHhh
Confidence            99999877666667775    79999999999987654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.74  E-value=7.4e-18  Score=124.53  Aligned_cols=106  Identities=30%  Similarity=0.692  Sum_probs=92.0

Q ss_pred             CCCCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCC---CCCeEEEEeccccchhhhhhCCccc
Q psy14086         79 VNEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKT---EEDVSIAKIDCTQHRSICQSFDIKS  153 (324)
Q Consensus        79 ~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~---~~~i~~~~vd~~~~~~~~~~~~i~~  153 (324)
                      ....+..++.++|++.+  .+++++|+||++||++|+.+.|.|+++++.+++   ..++.|+.+|++.+. +++  +|++
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            44578999999999876  445789999999999999999999999999975   236999999998775 665  9999


Q ss_pred             cceEEEEeCCeE--eeeecCCCCHHHHHHHHHhhhC
Q psy14086        154 YPTLLWIESGKK--LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       154 ~P~~~~~~~g~~--~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++++|++|+.  ..+|.|..+.++|.+||.+.+.
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence            999999998754  6779999999999999998875

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.74  E-value=3.4e-17  Score=118.60  Aligned_cols=102  Identities=25%  Similarity=0.494  Sum_probs=88.6

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      ......+.++|++.+.+ ++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +++++++++|.++|+
T Consensus         7 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~-~~---~~~~~~vd~~~--~~~l~~~~~v~~~Pt   80 (109)
T 3f3q_A            7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQ-YP---QADFYKLDVDE--LGDVAQKNEVSAMPT   80 (109)
T ss_dssp             CCEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             cccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHH-CC---CCEEEEEECCC--CHHHHHHcCCCccCE
Confidence            34555667789888864 5899999999999999999999999965 43   48999999999  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +++|++|+.+..+.|. +.+.|.++|.+++
T Consensus        81 ~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           81 LLLFKNGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            9999999998889998 7799999998753

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.73  E-value=1.8e-17  Score=121.95  Aligned_cols=100  Identities=11%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             CceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc----ccchhhhhhCCccccce
Q psy14086         82 GLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC----TQHRSICQSFDIKSYPT  156 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~----~~~~~~~~~~~i~~~P~  156 (324)
                      .+..++.++|.+.+.+ ++++|+||++||++|+.+.|.|.++++.++.  .+.++.++.    +....++++|+|.++|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt   90 (118)
T 1zma_A           13 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVPG   90 (118)
T ss_dssp             TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             hhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEEEECCCcCcHHHHHHHHHHcCCCCCCe
Confidence            6888999999988744 5789999999999999999999999999875  677775443    34468899999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                      ++++++|+...++.|..+.++|.+||+
T Consensus        91 ~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           91 FVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            999999998889999999999999985

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.73  E-value=1.6e-17  Score=135.00  Aligned_cols=112  Identities=31%  Similarity=0.777  Sum_probs=99.4

Q ss_pred             CCCeeEecccccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ...+..+++++|+..+. +++++|.||++||++|+.+.|.|++++.+ +..  .+.|+.+|++.  ++++++.++|.++|
T Consensus        96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~P  170 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKE-VDG--LLRIGAVNCGD--DRMLCRMKGVNSYP  170 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHH-TBT--TBEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHH-hcC--ceEEEEEECCc--cHHHHHHcCCCcCC
Confidence            36789999999998774 46899999999999999999999999965 444  69999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcccCCCCC
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDEL  324 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~~~el  324 (324)
                      |+++|++|+.+..+.|..+.+.|.+||.+.++....+|
T Consensus       171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~~~i  208 (210)
T 3apq_A          171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL  208 (210)
T ss_dssp             EEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCCSSCC
T ss_pred             eEEEEECCCceeEecCCCCHHHHHHHHHHhCcccceec
Confidence            99999999988889999999999999999988665544

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.73  E-value=7.5e-18  Score=127.53  Aligned_cols=104  Identities=15%  Similarity=0.297  Sum_probs=80.4

Q ss_pred             CceEcChhhHHHHhcC-CCEEEEEeCCC--CHhHhhHHHHHHHHHHhcCCCCCeE--EEEeccccchhhhhhCCccccce
Q psy14086         82 GLVELTEESFEKYVSL-GNHFVKFYAPW--CGHCQSLAPVWQELASHFKTEEDVS--IAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~i~--~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ++..++.++|++.+.. +.++|.|+++|  |++|+.+.|.|+++++++ +  ++.  |+.||+++++.++++|+|+++||
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~~~la~~~~V~~iPT   94 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQSEAIGDRFNVRRFPA   94 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHHHHHHHTTTCCSSSE
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCCHHHHHhcCCCcCCe
Confidence            5788999999998854 46788898877  999999999999999999 6  688  99999999999999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +++|++|+...++.|..+.++|.+||++.+..
T Consensus        95 ~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           95 TLVFTDGKLRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             EEEESCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEeCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            99999999888999999999999999999873

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.73  E-value=4.4e-17  Score=119.60  Aligned_cols=100  Identities=26%  Similarity=0.631  Sum_probs=89.8

Q ss_pred             CceEcCh-hhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVELTE-ESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l~~-~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+..++. ++|.+.+.   +++++|.||++||++|+.+.|.++++++.+    ++.|+.+|++.+..++++|+|+++|++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceE
Confidence            3778887 89988875   457899999999999999999999999987    499999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++++|+...++.| .+.++|.++|++++
T Consensus        90 ~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           90 IAIKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            99999998888999 68999999998753

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.73  E-value=6.1e-18  Score=127.51  Aligned_cols=105  Identities=17%  Similarity=0.304  Sum_probs=92.2

Q ss_pred             CCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec---------CCccchhhhhh
Q psy14086        209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC---------TQELSKDLCNQ  279 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~---------~~~~~~~~~~~  279 (324)
                      +.+..++.++|++.+.+ +++|.||++||++|+.+.|.+++++.+ +    ++.|+.+|+         +.  +.+++++
T Consensus        16 ~~v~~l~~~~~~~~~~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~-~----~v~~~~vd~~~~~~~~~~d~--~~~l~~~   87 (135)
T 3emx_A           16 GRLIYITPEEFRQLLQG-DAILAVYSKTCPHCHRDWPQLIQASKE-V----DVPIVMFIWGSLIGERELSA--ARLEMNK   87 (135)
T ss_dssp             TEEEECCHHHHHHHHTS-SEEEEEEETTCHHHHHHHHHHHHHHTT-C----CSCEEEEEECTTCCHHHHHH--HHHHHHH
T ss_pred             CceeecCHHHHHHHhCC-cEEEEEECCcCHhhhHhChhHHHHHHH-C----CCEEEEEECCCchhhhhhhh--hHHHHHH
Confidence            67889999999999888 999999999999999999999999954 3    278999998         55  7889999


Q ss_pred             cCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcccCC
Q psy14086        280 EGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH  321 (324)
Q Consensus       280 ~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~~  321 (324)
                      |+|.++||+++|++|+.+..+.|..+.+.+.+++++.++...
T Consensus        88 ~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~  129 (135)
T 3emx_A           88 AGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEG  129 (135)
T ss_dssp             HTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC----
T ss_pred             cCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCc
Confidence            999999999999999998899999999999999999887643

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.73  E-value=2.1e-17  Score=120.32  Aligned_cols=104  Identities=31%  Similarity=0.588  Sum_probs=91.8

Q ss_pred             CCCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        207 KPEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      .++....++.++|++.++. ++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +++++++++|.++
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~-~~---~v~~~~vd~~~--~~~~~~~~~v~~~   80 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKT-YT---KMVFIKVDVDE--VSEVTEKENITSM   80 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--THHHHHHTTCCSS
T ss_pred             ceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHH-cC---CCEEEEEECCC--CHHHHHHcCCCcc
Confidence            3467888999999998864 5799999999999999999999999955 33   49999999998  8899999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |++++|++|+.+..+.|. +.+.|.+||++.+
T Consensus        81 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           81 PTFKVYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             SEEEEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             cEEEEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            999999999988889998 9999999998765

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.73  E-value=4.3e-17  Score=133.55  Aligned_cols=107  Identities=25%  Similarity=0.607  Sum_probs=96.0

Q ss_pred             CCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ...+..++.++|++.+  .+++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +++++++|+|.++
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~-~~~--~v~~~~vd~d~--~~~l~~~~~v~~~   85 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQG--KLTVAKLNIDQ--NPGTAPKYGIRGI   85 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CTTTGGGGTCCSB
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHH-hcC--CcEEEEEECCC--CHHHHHHcCCCcC
Confidence            4679999999999854  346899999999999999999999999965 444  59999999999  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      |++++|++|+.+..+.|..+.+.|.+||.+.++.
T Consensus        86 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  119 (222)
T 3dxb_A           86 PTLLLFKNGEVAATKVGALSKGQLKEFLDANLAG  119 (222)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             CEEEEEECCeEEEEeccccChHHHHHHHHhhccc
Confidence            9999999999988899999999999999998763

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.73  E-value=2.3e-17  Score=123.16  Aligned_cols=87  Identities=20%  Similarity=0.426  Sum_probs=81.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      .+++++|.||++||++|+.+.|.++++++.+++  ++.|+.+|++.+..++++|+|+++|+++++++|+...++.|..+.
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~  118 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSS  118 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCH
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecCCCCH
Confidence            345789999999999999999999999999986  799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy14086        176 ETLVNYVSK  184 (324)
Q Consensus       176 ~~i~~fi~~  184 (324)
                      ++|.+||++
T Consensus       119 ~~l~~~l~~  127 (128)
T 3ul3_B          119 NDLIALIKK  127 (128)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999999865

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.73  E-value=2.7e-17  Score=140.31  Aligned_cols=105  Identities=23%  Similarity=0.531  Sum_probs=95.7

Q ss_pred             CCeeEecccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        209 EPVVSLTSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      +.|..++.++|++.+.   +++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  ++++++.|+|.++
T Consensus         7 ~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~   81 (287)
T 3qou_A            7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQ-YNG--QFILAKLDCDA--EQMIAAQFGLRAI   81 (287)
T ss_dssp             TTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHH-HTS--SSEEEEEETTT--CHHHHHTTTCCSS
T ss_pred             CccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHH-cCC--CeEEEEEeCcc--CHHHHHHcCCCCC
Confidence            5799999999999885   36899999999999999999999999966 544  69999999999  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ||+++|++|+.+..+.|..+.+.+.+||...++
T Consensus        82 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           82 PTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            999999999988889999999999999988764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.73  E-value=1.1e-17  Score=123.94  Aligned_cols=104  Identities=27%  Similarity=0.637  Sum_probs=88.0

Q ss_pred             CCeeEeccccccccc-c-CCcEEEEEeCCCCh--------------hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc
Q psy14086        209 EPVVSLTSENFNDVI-K-SGTVFIKFFAPWCG--------------HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL  272 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~--------------~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~  272 (324)
                      ..+..+++++|++.+ . +++++|.||++||+              +|+.+.|.+++++.+ +..  ++.++.+|++.  
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~-~~~--~~~~~~vd~d~--   77 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADE-YQG--KLTVAKLNIDQ--   77 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTS--
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHH-hcC--CeEEEEEECCC--
Confidence            458889999998654 3 46899999999999              999999999999855 443  59999999999  


Q ss_pred             chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       273 ~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +++++++|+|+++|++++|++|+.+..+.|..+.++|.+||++.+
T Consensus        78 ~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           78 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             CTTTGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             CHHHHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            899999999999999999999998888999999999999998765

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.73  E-value=4.5e-17  Score=117.20  Aligned_cols=101  Identities=28%  Similarity=0.614  Sum_probs=87.9

Q ss_pred             eeEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        211 VVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       211 v~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      |..+++ ++|++.+.   +++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~P   76 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQ-FAD--NVVVLKVDVDE--CEDIAMEYNISSMP   76 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TEEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHH-hCC--CeEEEEEeccc--hHHHHHHcCCCccc
Confidence            456777 77887775   45899999999999999999999999955 433  69999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++++|++|+.+..+.| .+.+.+.+||++.+
T Consensus        77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             EEEEEETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             EEEEEcCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence            9999999998888999 68899999998753

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.72  E-value=3.5e-17  Score=119.54  Aligned_cols=99  Identities=19%  Similarity=0.271  Sum_probs=84.3

Q ss_pred             CCeeEeccccccccccC--C--cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIKS--G--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~--~--~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +.+.+++.++|.+.+.+  +  +++|.||++||++|+.+.|.++++|.+ +.   ++.|+++|++.  .   .++|+|.+
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~-~~---~v~f~kvd~d~--~---~~~~~v~~   73 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARK-FP---ETKFVKAIVNS--C---IQHYHDNC   73 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHH-CT---TSEEEEEEGGG--T---STTCCGGG
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHH-CC---CCEEEEEEhHH--h---HHHCCCCC
Confidence            46888999999876632  2  799999999999999999999999966 43   48999999887  3   47899999


Q ss_pred             cceEEEEecCeeeeeecCC-------CCHHHHHHHHHhh
Q psy14086        285 FPSIYVYKNGVRTAEYNGS-------RDLEELYQFILKH  316 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~-------~~~~~l~~fi~~~  316 (324)
                      +||+++|++|+.+..+.|.       .+.+.|..+|.+.
T Consensus        74 ~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           74 LPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             CSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             CCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            9999999999998887774       4789999999765

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.72  E-value=2.1e-17  Score=119.92  Aligned_cols=103  Identities=17%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             eeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086        211 VVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV  290 (324)
Q Consensus       211 v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~  290 (324)
                      +..++.++|+.+.++++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  ++++++++++.++|++++
T Consensus         5 ~~~~~~~~f~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~-~~---~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~   78 (110)
T 2l6c_A            5 RDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGAR-AP---QVAISSVDSEA--RPELMKELGFERVPTLVF   78 (110)
T ss_dssp             SBCGGGCSHHHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTT-CT---TSCEEEEEGGG--CHHHHHHTTCCSSCEEEE
T ss_pred             eecCCHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHH-CC---CcEEEEEcCcC--CHHHHHHcCCcccCEEEE
Confidence            4556778884444557899999999999999999999999854 32   58999999988  899999999999999999


Q ss_pred             EecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        291 YKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       291 ~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      |++|+.+..+.|..+.++|.++|.+..+.
T Consensus        79 ~~~G~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           79 IRDGKVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             EESSSEEEEEESCCCHHHHHHHHHTC---
T ss_pred             EECCEEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            99999988899999999999999987654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.72  E-value=6e-17  Score=118.25  Aligned_cols=99  Identities=22%  Similarity=0.518  Sum_probs=86.7

Q ss_pred             CceEcCh-hhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVELTE-ESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l~~-~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+..++. +.|++.++ +++++|.||++||++|+.+.|.|.++++++.+   +.|+.+|++.+..++++|+|+++|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   89 (114)
T 2oe3_A           13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTFVL   89 (114)
T ss_dssp             GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHCCCCcccEEEE
Confidence            4555554 56667664 45689999999999999999999999999875   9999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      +++|+...++.|.. .+.|.++|++
T Consensus        90 ~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           90 GKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             EeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            99999888899998 9999999875

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.72  E-value=1.3e-16  Score=120.78  Aligned_cols=106  Identities=23%  Similarity=0.490  Sum_probs=93.9

Q ss_pred             CCCceEc-ChhhHHHHh-----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc
Q psy14086         80 NEGLVEL-TEESFEKYV-----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS  153 (324)
Q Consensus        80 ~~~~~~l-~~~~f~~~~-----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~  153 (324)
                      ...+..+ +.++|.+.+     .+++++|.||++||++|+.+.|.|++++..+.   ++.|+.+|++.+..++++|+|++
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   99 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKA   99 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccHHHHHHcCCCc
Confidence            3456666 478898876     36689999999999999999999999999985   59999999999999999999999


Q ss_pred             cceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        154 YPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       154 ~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +|+++++++|+...++.|. +.++|.++|.+.+...
T Consensus       100 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~~  134 (139)
T 3d22_A          100 TPTFFFLRDGQQVDKLVGA-NKPELHKKITAILDSL  134 (139)
T ss_dssp             ESEEEEEETTEEEEEEESC-CHHHHHHHHHHHHHTS
T ss_pred             ccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhccC
Confidence            9999999999988889998 8999999999998743

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.72  E-value=4e-17  Score=119.86  Aligned_cols=100  Identities=25%  Similarity=0.585  Sum_probs=88.3

Q ss_pred             CeeEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        210 PVVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       210 ~v~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      .+..+++ ++|++.+.   +++++|.||++||++|+.+.|.+++++.+ +    ++.++.+|++.  +++++++++|.++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~-~----~~~~~~vd~~~--~~~~~~~~~v~~~   86 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEK-Y----DAIFVKVDVDK--LEETARKYNISAM   86 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTT-S----SSEEEEEETTT--SHHHHHHTTCCSS
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHH-c----CcEEEEEECCc--cHHHHHHcCCCcc
Confidence            3788888 77888775   45899999999999999999999999955 3    58999999998  8999999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |++++|++|+.+..+.| .+.+.|.++|++.+
T Consensus        87 Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           87 PTFIAIKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             SEEEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             ceEEEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            99999999998888899 58899999998763

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.72  E-value=6.6e-17  Score=116.15  Aligned_cols=95  Identities=25%  Similarity=0.591  Sum_probs=84.0

Q ss_pred             ccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086        216 SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       216 ~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~  292 (324)
                      .++|++.+.   +++++|.||++||++|+.+.|.+++++.+ +.   ++.++.+|++.  ++++++.+++.++|++++|+
T Consensus         8 ~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~---~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~   81 (105)
T 3m9j_A            8 KTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEK-YS---NVIFLEVDVDD--CQDVASESEVKSMPTFQFFK   81 (105)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-ST---TSEEEEEETTT--CHHHHHHTTCCBSSEEEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHH-cc---CeEEEEEEhhh--hHHHHHHcCCCcCcEEEEEE
Confidence            455777775   46899999999999999999999999955 43   39999999999  89999999999999999999


Q ss_pred             cCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        293 NGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       293 ~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +|+.+..+.|. +.+.|.+||.+.+
T Consensus        82 ~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           82 KGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             CCeEEEEEeCC-CHHHHHHHHHHhC
Confidence            99998889998 9999999998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.72  E-value=5.6e-17  Score=119.81  Aligned_cols=104  Identities=21%  Similarity=0.539  Sum_probs=91.6

Q ss_pred             CCceEcCh-hhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTE-ESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~-~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..+..++. ++|++.+.. ++++|.||++||++|+.+.|.|.++++.+.+. .+.|+.+|++.+..++++|+|.++|+++
T Consensus        15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~   93 (121)
T 2j23_A           15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTFV   93 (121)
T ss_dssp             CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred             cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEEE
Confidence            35666654 889888844 47899999999999999999999999998751 3999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++++|+...++.|. +.++|.+||.+.+
T Consensus        94 ~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           94 FFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            99999988889998 9999999998865

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.72  E-value=9.5e-18  Score=126.99  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             CeeEeccccccccccC-CcEEEEEeCCC--ChhhhhhhHhHHHHHHHhhcCCCCeE--EEEEecCCccchhhhhhcCCCc
Q psy14086        210 PVVSLTSENFNDVIKS-GTVFIKFFAPW--CGHCKRLAPTWEELGTKLLDNKHGIV--IAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~--c~~C~~~~~~~~~~a~~~~~~~~~~~--~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      .+..++.++|++++.+ +.++|+|++.|  |++|+.+.|.|++++.+ + .  ++.  |+.+|++.  +++++.+|+|.+
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~-~-~--~v~~~~~~Vd~d~--~~~la~~~~V~~   91 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLRE-F-P--QFDWQVAVADLEQ--SEAIGDRFNVRR   91 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHT-C-T--TSCCEEEEECHHH--HHHHHHTTTCCS
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHH-h-c--ccceeEEEEECCC--CHHHHHhcCCCc
Confidence            5788899999998865 46888998877  99999999999999966 4 3  577  99999998  899999999999


Q ss_pred             cceEEEEecCeeeeeecCCCCHHHHHHHHHhhcccCC
Q psy14086        285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESH  321 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~~  321 (324)
                      +||+++|++|+.+..+.|..+.+.|.+||++.++...
T Consensus        92 iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~~  128 (142)
T 2es7_A           92 FPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPA  128 (142)
T ss_dssp             SSEEEEESCC----CEESCCCHHHHHHHHHHHHC---
T ss_pred             CCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhcccc
Confidence            9999999999988889999999999999999876543

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.72  E-value=1.2e-16  Score=119.96  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=96.5

Q ss_pred             CceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc--cceEE
Q psy14086         82 GLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS--YPTLL  158 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~P~~~  158 (324)
                      .+.++|.++|++.+.. .+++|.||++ |++|+.+.|.++++|++|++  ++.|+.+|.++++.++++|||++  +|+++
T Consensus         7 lv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g--k~~f~~vd~d~~~~~a~~~gi~~~~iPtl~   83 (133)
T 2djk_A            7 LIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAFA   83 (133)
T ss_dssp             CSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEEE
T ss_pred             ceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC--eEEEEEEchHHhHHHHHHcCCCcccCCEEE
Confidence            4778999999988754 4789999999 89999999999999999988  89999999999999999999999  99999


Q ss_pred             EEeC--CeEeeeec--CCCCHHHHHHHHHhhhCCCCCCCC
Q psy14086        159 WIES--GKKLDKFQ--GSRTLETLVNYVSKMKGPLNKKAD  194 (324)
Q Consensus       159 ~~~~--g~~~~~~~--g~~~~~~i~~fi~~~~~~~~~~~~  194 (324)
                      ++++  |+.+ ++.  |..+.++|.+||++++.|+.++..
T Consensus        84 i~~~~~g~~~-~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~  122 (133)
T 2djk_A           84 IQEVAKNQKF-PFDQEKEITFEAIKAFVDDFVAGKIEPSI  122 (133)
T ss_dssp             EECTTTCCBC-CCCSSSCCCHHHHHHHHHHHHHTCCCCSS
T ss_pred             EEecCcCccc-CCCCccccCHHHHHHHHHHHHcCCcCccc
Confidence            9987  6553 555  999999999999999998865544

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.72  E-value=8.8e-17  Score=119.22  Aligned_cols=103  Identities=28%  Similarity=0.535  Sum_probs=89.6

Q ss_pred             CCCeeEe-cccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC
Q psy14086        208 PEPVVSL-TSENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG  281 (324)
Q Consensus       208 ~~~v~~l-~~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~  281 (324)
                      ...|..+ +.++|++.+.     +++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  +.+++++|+
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~-~~---~v~~~~vd~d~--~~~l~~~~~   88 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LP---NVLFLKVDTDE--LKSVASDWA   88 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHH-CS---SEEEEEEETTT--SHHHHHHTT
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHH-CC---CcEEEEEECcc--CHHHHHHcC
Confidence            4568888 5577887774     45899999999999999999999999965 43   59999999998  899999999


Q ss_pred             CCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        282 VDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       282 i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |.++|++++|++|+.+..+.| .+.+.|.++|.+.+
T Consensus        89 v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           89 IQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             CCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             CCccCEEEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence            999999999999998888889 48999999998875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.71  E-value=9.3e-17  Score=121.90  Aligned_cols=100  Identities=14%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             ChhhHHHHh-c--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         87 TEESFEKYV-S--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        87 ~~~~f~~~~-~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      +.++|++.+ +  +++++|.||++||++|+.+.|.|+++++++.+  ++.|+.||+++++.++++|+|+++|++++|++|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            577888765 3  45789999999999999999999999999976  799999999999999999999999999999999


Q ss_pred             eEee---------eecCCCC-HHHHHHHHHhhhCC
Q psy14086        164 KKLD---------KFQGSRT-LETLVNYVSKMKGP  188 (324)
Q Consensus       164 ~~~~---------~~~g~~~-~~~i~~fi~~~~~~  188 (324)
                      +.+.         +..|..+ .+++.++|++.+.+
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence            8765         3456554 89999999988764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.71  E-value=7e-17  Score=120.17  Aligned_cols=92  Identities=12%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec--cccchhhhhhCCccccceEEEEe-CCeEeeeecCC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID--CTQHRSICQSFDIKSYPTLLWIE-SGKKLDKFQGS  172 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd--~~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~  172 (324)
                      ..++++|.||++||++|+.+.|.+.++++.+++  ++.|+.+|  ++.+..++++|+|.++|++++++ +|+...++.|.
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~  102 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG--KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGL  102 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS--SCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESC
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCC
Confidence            445789999999999999999999999999975  79999999  99999999999999999999999 68888889999


Q ss_pred             CCHHHHHHHHHhhhCCC
Q psy14086        173 RTLETLVNYVSKMKGPL  189 (324)
Q Consensus       173 ~~~~~i~~fi~~~~~~~  189 (324)
                      .+.++|.++|++.+...
T Consensus       103 ~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A          103 MRKNNIETILNSLGVKE  119 (126)
T ss_dssp             CCHHHHHHHHHHHCCCC
T ss_pred             CCHHHHHHHHHHHhccc
Confidence            99999999999998743

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.71  E-value=8e-17  Score=122.19  Aligned_cols=105  Identities=24%  Similarity=0.489  Sum_probs=80.6

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      +.+..+++++|.+.+.+ +.++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +.++++.|++.++|+
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~-~~~--~v~~~~vd~~~--~~~l~~~~~v~~~Pt  107 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARD-HAG--RLKVVKVNVDE--HPGLAARYGVRSVPT  107 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TEEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHH-ccC--ceEEEEEECCC--CHHHHHHCCCCccCE
Confidence            56888999999987643 3499999999999999999999999955 544  59999999999  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++|++|+.+..+.|..+.+.|.+||.+.+.
T Consensus       108 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          108 LVLFRRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEEEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            9999999988889999999999999998875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.71  E-value=4.9e-17  Score=121.37  Aligned_cols=95  Identities=26%  Similarity=0.419  Sum_probs=82.7

Q ss_pred             cccccccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC
Q psy14086        216 SENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG  294 (324)
Q Consensus       216 ~~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g  294 (324)
                      ++.+.... .+++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  +++++++|+|.++|++++|++|
T Consensus        32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~-~~~--~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G  106 (128)
T 3ul3_B           32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKY-YGK--RIYLLKVDLDK--NESLARKFSVKSLPTIILLKNK  106 (128)
T ss_dssp             CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HGG--GEEEEEEEGGG--CHHHHHHTTCCSSSEEEEEETT
T ss_pred             ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHH-hcC--CeEEEEEECCC--CHHHHHHcCCCCcCEEEEEECC
Confidence            33344443 346899999999999999999999999965 443  69999999999  8999999999999999999999


Q ss_pred             eeeeeecCCCCHHHHHHHHHh
Q psy14086        295 VRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       295 ~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +.+..+.|..+.++|.+||++
T Consensus       107 ~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          107 TMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEEEESSCCCHHHHHHHHTT
T ss_pred             EEEEEecCCCCHHHHHHHHHh
Confidence            998889999999999999975

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.71  E-value=1.1e-16  Score=118.76  Aligned_cols=103  Identities=25%  Similarity=0.595  Sum_probs=90.1

Q ss_pred             CCCeeEecccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-CccchhhhhhcCCC
Q psy14086        208 PEPVVSLTSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-QELSKDLCNQEGVD  283 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-~~~~~~~~~~~~i~  283 (324)
                      .+.+..++.++|.+.+.   +++++|.||++||++|+.+.|.+++++.+ +.   ++.++.+|++ .  +.+++++++|+
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~-~~---~~~~~~vd~~~~--~~~~~~~~~v~   90 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEE-YL---DVIFLKLDCNQE--NKTLAKELGIR   90 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSST--THHHHHHHCCS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHH-CC---CCEEEEEecCcc--hHHHHHHcCCC
Confidence            36799999999988774   46899999999999999999999999955 43   4899999997 5  78899999999


Q ss_pred             ccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        284 GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++|+++++++|+.+..+.|.. .+++.++|++.+
T Consensus        91 ~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           91 VVPTFKILKENSVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             SSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             eeeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            999999999999888888975 899999998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.71  E-value=9.3e-17  Score=118.76  Aligned_cols=103  Identities=29%  Similarity=0.473  Sum_probs=90.9

Q ss_pred             CCeeEecccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086        209 EPVVSLTSENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD  283 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~  283 (324)
                      +.+..++.++|++.+.     +++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  +++++++|++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~---~~~~~~vd~~~--~~~~~~~~~v~   86 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKK-FP---NAVFLKVDVDE--LKPIAEQFSVE   86 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCC
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHH-CC---CcEEEEEECCC--CHHHHHHcCCC
Confidence            4577778888988774     45899999999999999999999999955 43   38999999998  89999999999


Q ss_pred             ccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        284 GFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      ++|++++|++|+.+..+.|.. .+.|.+||++.++
T Consensus        87 ~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           87 AMPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             cccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            999999999999888899998 9999999998875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.71  E-value=5e-17  Score=133.78  Aligned_cols=143  Identities=19%  Similarity=0.306  Sum_probs=112.7

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEe--CCCCHhHhhHHHHHHHHHHhcCC-CCCeEEEEecccc-----chhhhhhCC
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFY--APWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCTQ-----HRSICQSFD  150 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~--~~~c~~c~~~~~~~~~la~~~~~-~~~i~~~~vd~~~-----~~~~~~~~~  150 (324)
                      ...+..|+.++|++.+.. ++++|.||  +|||+    +.|.|++++..+.+ ..++.|+.|||+.     ++.+|++|+
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~   90 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   90 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence            346889999999997744 46899999  99998    99999999999954 3479999999998     899999999


Q ss_pred             cc--ccceEEEEeCCeE--eeee--cCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccccccc
Q psy14086        151 IK--SYPTLLWIESGKK--LDKF--QGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIK  224 (324)
Q Consensus       151 i~--~~P~~~~~~~g~~--~~~~--~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~  224 (324)
                      |+  ++||+++|. |+.  ...|  .|.++.++|.+||.+.++...               ..++.+     ..++.++ 
T Consensus        91 V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~---------------~~~g~i-----~~~d~l~-  148 (248)
T 2c0g_A           91 VDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLYI---------------GRDGCI-----KEFNEVL-  148 (248)
T ss_dssp             CCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCCC---------------CCTTCC-----HHHHHHH-
T ss_pred             CCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhcccc---------------CCCCch-----HHHHHHH-
Confidence            99  999999999 862  5678  899999999999999876220               001212     2233332 


Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTK  253 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~  253 (324)
                           ..|.+.||..|..+.+..++++.+
T Consensus       149 -----~~f~~~~~~~~~~~~~~~~~~~~~  172 (248)
T 2c0g_A          149 -----KNYANIPDAEQLKLIEKLQAKQEQ  172 (248)
T ss_dssp             -----TTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHhcccchhHHHHHHHHHHHHHH
Confidence                 236778899998888888887744

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.71  E-value=3.3e-16  Score=114.93  Aligned_cols=103  Identities=24%  Similarity=0.601  Sum_probs=91.8

Q ss_pred             CceEc-ChhhHHHHhc-----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         82 GLVEL-TEESFEKYVS-----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~~-----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      .+..+ +.++|++.+.     +++++|.||++||++|+.+.|.|+++++.++   ++.|+.+|++.+..++++|+++++|
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~P   83 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAMP   83 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSBS
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCcCc
Confidence            56667 5788888773     5688999999999999999999999999986   4999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      +++++++|+...++.| .+.++|.++|.+.+..
T Consensus        84 t~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           84 TFLFIKDGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             EEEEEETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             EEEEEeCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            9999999998888888 5899999999998863

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=6e-18  Score=127.94  Aligned_cols=103  Identities=17%  Similarity=0.431  Sum_probs=89.8

Q ss_pred             CCceEcChhhHHHHhcC-C--CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc-----
Q psy14086         81 EGLVELTEESFEKYVSL-G--NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK-----  152 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~-~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~-----  152 (324)
                      ..+..++.++|++.+.. +  +++|+||++||++|+.+.|.|+++++++.+ .++.|+.||+++++.++++|+|+     
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCccCHHHHHHccCcccCCc
Confidence            46889999999988832 2  789999999999999999999999999974 26999999999999999999999     


Q ss_pred             -ccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        153 -SYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       153 -~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                       ++|++++|++|+...++.|..+.+.|.+|+.+
T Consensus        86 ~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           86 KQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             SCSSEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred             CCCCEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence             99999999999988889998877666666543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.71  E-value=5.5e-17  Score=124.21  Aligned_cols=99  Identities=16%  Similarity=0.204  Sum_probs=86.7

Q ss_pred             cccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE
Q psy14086        215 TSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY  291 (324)
Q Consensus       215 ~~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~  291 (324)
                      +.++|++.+.   +++++|.||++||++|+.+.|.+++++.+ +..  .+.|+.+|++.  ++++++.|+|.++||+++|
T Consensus        10 ~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~-~~~--~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~   84 (149)
T 3gix_A           10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSD-LSK--MAAIYLVDVDQ--TAVYTQYFDISYIPSTVFF   84 (149)
T ss_dssp             SHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTT-TTT--TEEEEEEETTT--CCHHHHHTTCCSSSEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-ccC--ceEEEEEECCc--CHHHHHHcCCCccCeEEEE
Confidence            4566887763   46899999999999999999999999955 443  59999999998  8999999999999999999


Q ss_pred             ecCeee---------eeecC-CCCHHHHHHHHHhhcc
Q psy14086        292 KNGVRT---------AEYNG-SRDLEELYQFILKHKV  318 (324)
Q Consensus       292 ~~g~~~---------~~~~g-~~~~~~l~~fi~~~~~  318 (324)
                      ++|+.+         ..+.| ..+.++|.++|++.+.
T Consensus        85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            999988         78889 7899999999987753

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.70  E-value=1.2e-16  Score=114.56  Aligned_cols=99  Identities=27%  Similarity=0.601  Sum_probs=85.8

Q ss_pred             eEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        212 VSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       212 ~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      ..++. ++|++.+.   +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  ++++++.+++.++|+
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~-~~---~~~~~~v~~~~--~~~~~~~~~v~~~Pt   75 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKE-IP---EVEFAKVDVDQ--NEEAAAKYSVTAMPT   75 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHH-CC---CCEEEEEeccC--CHHHHHHcCCccccE
Confidence            45565 66877775   45899999999999999999999999955 33   59999999998  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +++|++|+.+..+.| .+.++|.+||++.+
T Consensus        76 ~~~~~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           76 FVFIKDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEEeCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            999999998888899 58999999998763

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.70  E-value=1.9e-16  Score=115.30  Aligned_cols=102  Identities=25%  Similarity=0.570  Sum_probs=90.4

Q ss_pred             CceEc-ChhhHHHHhc-----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         82 GLVEL-TEESFEKYVS-----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~~-----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      .+..+ +.++|++.+.     +++++|.||++||++|+.+.+.+++++..+.   ++.|+.+|++.++.++++|++.++|
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~P   81 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMP   81 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSSTT
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCccc
Confidence            46666 6788988774     4568999999999999999999999999986   4999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++++|+...++.| .+.++|.++|++++.
T Consensus        82 t~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           82 TFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEEETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            9999999998888888 588999999988763

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=3.3e-16  Score=117.91  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=88.5

Q ss_pred             CCCceEcChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         80 NEGLVELTEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ...+..++.++|.+.+..    ++++|+||++||++|+.+.|.|++++.++.   .+.|+.||++...   ++|+|.++|
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~---~~~~i~~~P   82 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI---EHYHDNCLP   82 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC---SSCCSSCCS
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc---ccCCCCCCC
Confidence            356888999999988743    368999999999999999999999999985   4999999998764   789999999


Q ss_pred             eEEEEeCCeEeeeecCCC-------CHHHHHHHHHhhh
Q psy14086        156 TLLWIESGKKLDKFQGSR-------TLETLVNYVSKMK  186 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~-------~~~~i~~fi~~~~  186 (324)
                      ++++|++|+.+.++.|..       +.++|.++|.+.-
T Consensus        83 t~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           83 TIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            999999998888888875       7999999999863

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=7.5e-18  Score=127.39  Aligned_cols=104  Identities=17%  Similarity=0.396  Sum_probs=88.9

Q ss_pred             CCCeeEeccccccccccC-C--cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC-
Q psy14086        208 PEPVVSLTSENFNDVIKS-G--TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD-  283 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~--~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~-  283 (324)
                      +..+..++.++|++.+.. +  +++|.||++||++|+.+.|.|++++.++..  .++.|+.+|++.  +++++++|+|. 
T Consensus         6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~--~~~~~~~~~v~~   81 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC--TGLNFGKVDVGR--YTDVSTRYKVST   81 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS--SSCEEEECCTTT--CHHHHHHTTCCC
T ss_pred             CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCcc--CHHHHHHccCcc
Confidence            356999999999988743 2  799999999999999999999999966432  269999999999  89999999999 


Q ss_pred             -----ccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        284 -----GFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       284 -----~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                           ++||+++|++|+.+..+.|..+.+.|.+||.+
T Consensus        82 ~~~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           82 SPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             CSSSSCSSEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred             cCCcCCCCEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence                 99999999999988888898877777666644

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.69  E-value=2.2e-16  Score=121.62  Aligned_cols=104  Identities=18%  Similarity=0.477  Sum_probs=91.1

Q ss_pred             CCeeEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +.+..++. ++|++.+.   +++++|.||++||++|+.+.|.|++++.+ +   .++.|+.+|++.  +++++++|+|.+
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~-~---~~v~~~~vd~~~--~~~l~~~~~v~~   85 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKE-L---PQVSFVKLEAEG--VPEVSEKYEISS   85 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-C---TTSEEEEEETTT--SHHHHHHTTCCS
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHH-c---CCeEEEEEECCC--CHHHHHHcCCCC
Confidence            56888874 77888775   46899999999999999999999999965 3   269999999999  899999999999


Q ss_pred             cceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +|++++|++|+.+..+.|. +.++|.+||.+.++.
T Consensus        86 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           86 VPTFLFFKNSQKIDRLDGA-HAPELTKKVQRHASS  119 (153)
T ss_dssp             SSEEEEEETTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred             CCEEEEEECCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9999999999888788885 788999999998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.69  E-value=1.2e-16  Score=118.01  Aligned_cols=104  Identities=27%  Similarity=0.576  Sum_probs=89.6

Q ss_pred             CCeeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..+..++. ++|++.+.. ++++|.||++||++|+.+.|.+++++.+ +.. .++.|+.+|++.  +++++++|++.++|
T Consensus        15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~-~~~-~~v~~~~vd~d~--~~~~~~~~~v~~~P   90 (121)
T 2j23_A           15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAG-DKVGFYKVDVDE--QSQIAQEVGIRAMP   90 (121)
T ss_dssp             CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTS-THH-HHSEEEEEETTT--CHHHHHHHTCCSSS
T ss_pred             cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHH-CcC-CcEEEEEEECcC--CHHHHHHcCCCccc
Confidence            55777776 668888854 5799999999999999999999999854 332 138999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++++|++|+.+..+.|. +.+.|.+||.+.+
T Consensus        91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            99999999988889998 9999999998875

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.69  E-value=1.2e-16  Score=116.63  Aligned_cols=100  Identities=26%  Similarity=0.488  Sum_probs=85.5

Q ss_pred             CCeeEecccc-cccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSEN-FNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~-~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      +.+..++..+ |++.++ +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +++++++|+|.++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~-~~---~v~~~~vd~~~--~~~l~~~~~v~~~P   85 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQA-YP---DVRFVKCDVDE--SPDIAKECEVTAMP   85 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCCSBS
T ss_pred             hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-CC---CCEEEEEECCC--CHHHHHHCCCCccc
Confidence            4566666644 666665 45899999999999999999999999955 43   39999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      ++++|++|+.+..+.|.. .+.|.++|++
T Consensus        86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           86 TFVLGKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEEEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             EEEEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            999999999888899988 8999999875

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.69  E-value=3.6e-16  Score=114.85  Aligned_cols=102  Identities=27%  Similarity=0.580  Sum_probs=88.4

Q ss_pred             CceEc--ChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVEL--TEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l--~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+..+  +.++|.+.+  .+++++|.||++||++|+.+.|.|.+++..+ .  ++.|+.+|++.+..++++|+|+++|++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~--~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K--DVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T--TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C--CeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            46667  678898544  3568899999999999999999999999998 4  699999999999999999999999999


Q ss_pred             EEEeC----CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIES----GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~----g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++    |+...++.|..+ ++|.+.+.++..
T Consensus        81 ~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~~  113 (118)
T 2f51_A           81 FFVKKEGNEIKTLDQFVGADV-SRIKADIEKFKH  113 (118)
T ss_dssp             EEEEEETTEEEEEEEEESCCH-HHHHHHHHHHC-
T ss_pred             EEEeCCCCcceEEEeecCCCH-HHHHHHHHHhhh
Confidence            99988    888888899865 569999988765

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.69  E-value=3.3e-16  Score=118.59  Aligned_cols=105  Identities=20%  Similarity=0.396  Sum_probs=91.1

Q ss_pred             CCCeeEec-ccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC
Q psy14086        208 PEPVVSLT-SENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG  281 (324)
Q Consensus       208 ~~~v~~l~-~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~  281 (324)
                      ...+..++ .++|.+.+.     +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +.+++++|+
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~-~~---~v~~~~v~~~~--~~~~~~~~~   96 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSEN-YP---SLMFLVIDVDE--LSDFSASWE   96 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--SHHHHHHTT
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHH-CC---CCEEEEEeCcc--cHHHHHHcC
Confidence            45677775 577888763     56899999999999999999999999965 42   59999999999  899999999


Q ss_pred             CCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        282 VDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       282 i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      |.++|++++|++|+.+..+.|. +.++|.++|.+.++.
T Consensus        97 v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A           97 IKATPTFFFLRDGQQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             CCEESEEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             CCcccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9999999999999988888998 899999999988764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.68  E-value=2.7e-16  Score=116.92  Aligned_cols=105  Identities=11%  Similarity=0.140  Sum_probs=87.5

Q ss_pred             eeEecccccc-----ccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEe--cCCccchhhhhhcCC
Q psy14086        211 VVSLTSENFN-----DVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD--CTQELSKDLCNQEGV  282 (324)
Q Consensus       211 v~~l~~~~~~-----~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id--~~~~~~~~~~~~~~i  282 (324)
                      +..++..+++     ... .+++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|  ++.  +.+++++|+|
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~-~~~--~v~~~~v~~~~d~--~~~~~~~~~v   80 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKE-REG--KFNIYYARLEEEK--NIDLAYKYDA   80 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHH-SSS--SCEEEEEETTSSH--HHHHHHHTTC
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHH-hcC--CeEEEEEeCCCCc--hHHHHHHcCC
Confidence            4445555554     333 345899999999999999999999999955 443  69999999  777  8899999999


Q ss_pred             CccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        283 DGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       283 ~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      .++|++++|. +|+.+..+.|..+.+.|.++|++.+...
T Consensus        81 ~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           81 NIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             CSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred             cceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence            9999999998 8888888999999999999999987643

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.68  E-value=3e-16  Score=114.25  Aligned_cols=103  Identities=25%  Similarity=0.514  Sum_probs=89.1

Q ss_pred             CCeeEe-cccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSL-TSENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l-~~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      +.+..+ +.++|++.+.     +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +++++++|++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~---~v~~~~v~~~~--~~~~~~~~~v   77 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKK-FP---NVTFLKVDVDE--LKAVAEEWNV   77 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHH-CS---SEEEEEEETTT--CHHHHHHHHC
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHh-CC---CcEEEEEEccc--cHHHHHhCCC
Confidence            557777 4577887774     45799999999999999999999999955 43   59999999998  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .++|++++|++|+.+..+.| .+.+.|.++|.+.++
T Consensus        78 ~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           78 EAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             SSTTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             CcccEEEEEeCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            99999999999998888888 588999999988764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.67  E-value=5.5e-17  Score=119.29  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCCcc
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVDGF  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~  285 (324)
                      ..+..++.++|.+.+.+ ++++|.||++||++|+.+.|.+++++.+ +..  .+.++.++...  ....+++++++|.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (118)
T 1zma_A           12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAE-TKA--HIYFINSEEPSQLNDLQAFRSRYGIPTV   88 (118)
T ss_dssp             TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHH-HCC--CCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             hhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHh-cCC--eEEEEECCCcCcHHHHHHHHHHcCCCCC
Confidence            45778888888887754 5899999999999999999999999965 332  45554333221  113578899999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHH
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~  314 (324)
                      ||+++|++|+.+..+.|..+.+.|.+||+
T Consensus        89 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           89 PGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             CEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             CeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            99999999998888999999999999985

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.67  E-value=5.1e-16  Score=113.95  Aligned_cols=104  Identities=25%  Similarity=0.515  Sum_probs=89.8

Q ss_pred             CCeeEec-ccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSLT-SENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l~-~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      +.+..++ .++|++.+.     +++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  ++++++.|++
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~---~~~~~~v~~~~--~~~~~~~~~v   79 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKK-FP---GAIFLKVDVDE--LKDVAEAYNV   79 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--SHHHHHHTTC
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHH-CC---CcEEEEEEccc--CHHHHHHcCC
Confidence            5677774 577887774     46899999999999999999999999965 43   59999999998  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .++|++++|++|+.+..+.| .+.+.+.++|.+.++.
T Consensus        80 ~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           80 EAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             CSBSEEEEEETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             CcCcEEEEEeCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            99999999999998888888 5899999999988764

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.67  E-value=9.9e-15  Score=121.61  Aligned_cols=201  Identities=10%  Similarity=0.118  Sum_probs=153.3

Q ss_pred             CceEcC-hhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         82 GLVELT-EESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        82 ~~~~l~-~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      .+..|+ .+++++++.  ...++|.|+.++|.   ...+.|.++|..+++  .+.|+..   .+..++++++++. |+++
T Consensus         7 ~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~---~~~~~F~~~A~~lr~--~~~F~~t---~~~~v~~~~~v~~-p~iv   77 (250)
T 3ec3_A            7 PSKEILTLKQVQEFLKDGDDVVILGVFQGVGD---PGYLQYQDAANTLRE--DYKFHHT---FSTEIAKFLKVSL-GKLV   77 (250)
T ss_dssp             SSEECCCHHHHHHHHHHCSSCEEEEECSCTTC---HHHHHHHHHHHHHTT--TCCEEEE---CCHHHHHHHTCCS-SEEE
T ss_pred             CceecCCHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHHHHHHhhhc--CcEEEEE---CcHHHHHHcCCCC-CeEE
Confidence            677775 478888774  55789999999854   578899999999988  7889865   3567889999987 9999


Q ss_pred             EEeCC-------eEeeeec--CCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccccCCcEE
Q psy14086        159 WIESG-------KKLDKFQ--GSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVIKSGTVF  229 (324)
Q Consensus       159 ~~~~g-------~~~~~~~--g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~  229 (324)
                      +|+++       +....|.  |.++.++|.+||....-                     +.|.+++.+++.....+.+.+
T Consensus        78 lfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~---------------------Plv~e~t~~n~~~~~~~~~l~  136 (250)
T 3ec3_A           78 LMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL---------------------PLVGHRKTSNDAKRYSKRPLV  136 (250)
T ss_dssp             EECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS---------------------CTEEEECTTTHHHHSCSSSEE
T ss_pred             EEecchhhccccccceeccCCCCCCHHHHHHHHHHcCC---------------------CceeecCccchhhhhccCccE
Confidence            99862       3344588  47899999999999876                     569999999988766666777


Q ss_pred             EEEeCC-CC---h-hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc--c-ceEEEEecCeeeeeec
Q psy14086        230 IKFFAP-WC---G-HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG--F-PSIYVYKNGVRTAEYN  301 (324)
Q Consensus       230 v~f~~~-~c---~-~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~-P~l~~~~~g~~~~~~~  301 (324)
                      +.|+.. .+   . .....+..+.++|++ ++   ++.|+++|+..  .....+.||++.  + |.++++..++....+.
T Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~vAk~-~k---ki~F~~~d~~~--~~~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~  210 (250)
T 3ec3_A          137 VVYYSVDFSFDYRTATQFWRNKVLEVAKD-FP---EYTFAIADEED--YATEVKDLGLSESGGDVNAAILDESGKKFAME  210 (250)
T ss_dssp             EEEECCCCSTTTHHHHHHHHHHHHHHHTT-CT---TSEEEEEETTT--THHHHHHTTCSSCSCSCEEEEECTTSCEEECC
T ss_pred             EEEEecccccccchhHHHHHHHHHHHHHh-hc---ceeEEEEcHHH--HHHHHHHcCCCccCCCcEEEEEcCCCceecCC
Confidence            777753 22   2 234478888999965 43   59999999887  677778899863  4 4777775443333455


Q ss_pred             -CCCCHHHHHHHHHhhcc
Q psy14086        302 -GSRDLEELYQFILKHKV  318 (324)
Q Consensus       302 -g~~~~~~l~~fi~~~~~  318 (324)
                       +..+.+.|.+|+.+.+.
T Consensus       211 ~~~~t~~~i~~Fv~~~~~  228 (250)
T 3ec3_A          211 PEEFDSDALREFVMAFKK  228 (250)
T ss_dssp             CCSCCHHHHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHC
Confidence             67899999999998765

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.67  E-value=3.7e-16  Score=117.31  Aligned_cols=102  Identities=20%  Similarity=0.364  Sum_probs=88.9

Q ss_pred             CCceEcCh-hhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccce
Q psy14086         81 EGLVELTE-ESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~~-~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~  156 (324)
                      ..+..++. ++|...+..   ++++|.||++||++|+.+.|.|++++..+    ++.|+.+|++.+..++++|+|+++|+
T Consensus        20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~Pt   95 (133)
T 3cxg_A           20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALPT   95 (133)
T ss_dssp             EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCCE
Confidence            35777774 788887743   36899999999999999999999998887    48999999999999999999999999


Q ss_pred             EEEEe--CCe--EeeeecCCCCHHHHHHHHHhhhC
Q psy14086        157 LLWIE--SGK--KLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       157 ~~~~~--~g~--~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++|.  +|+  ...++.|. +.++|.++|.+.+.
T Consensus        96 ~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           96 FEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            99996  776  67778888 89999999998875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.67  E-value=3.6e-16  Score=118.67  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             ccccccccc-c--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE
Q psy14086        215 TSENFNDVI-K--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY  291 (324)
Q Consensus       215 ~~~~~~~~~-~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~  291 (324)
                      +.++|++.+ +  +++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++|+|.++||+++|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~--~v~~~~vd~d~--~~~~~~~~~i~~~Pt~~~~   84 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEK-VKN--FAVIYLVDITE--VPDFNKMYELYDPCTVMFF   84 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHH-HTT--TEEEEEEETTT--CCTTTTSSCSCSSCEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-hCC--CeEEEEEcccc--CHHHHHHcCCCCCCEEEEE
Confidence            356677654 2  46899999999999999999999999965 444  59999999998  8999999999999999999


Q ss_pred             ecCeeee---------eecCCCC-HHHHHHHHHhhcc
Q psy14086        292 KNGVRTA---------EYNGSRD-LEELYQFILKHKV  318 (324)
Q Consensus       292 ~~g~~~~---------~~~g~~~-~~~l~~fi~~~~~  318 (324)
                      ++|+.+.         ...|..+ .+++.++|++.++
T Consensus        85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence            9998764         2445554 8999999988765

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=5.4e-16  Score=116.71  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=86.1

Q ss_pred             CCCeeEeccccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086        208 PEPVVSLTSENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD  283 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~  283 (324)
                      .+.+..++.++|.+.+..    ++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  ..   +.|+|.
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~-~~---~v~~~~vd~~~--~~---~~~~i~   79 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARK-FP---ETKFVKAIVNS--CI---EHYHDN   79 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHH-CS---SEEEEEECCSS--SC---SSCCSS
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHH-CC---CcEEEEEEhhc--Cc---ccCCCC
Confidence            367888998999887743    3799999999999999999999999965 32   59999999887  43   689999


Q ss_pred             ccceEEEEecCeeeeeecCCC-------CHHHHHHHHHhhc
Q psy14086        284 GFPSIYVYKNGVRTAEYNGSR-------DLEELYQFILKHK  317 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~~g~~-------~~~~l~~fi~~~~  317 (324)
                      ++||+++|++|+.+..+.|..       +.+.|.++|.+..
T Consensus        80 ~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           80 CLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             CCSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            999999999998887888864       7899999998863

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.66  E-value=5.9e-16  Score=128.74  Aligned_cols=112  Identities=23%  Similarity=0.580  Sum_probs=92.4

Q ss_pred             CCCeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ...|..+++++|++.+.+  ++++|.||++||++|+.+.|.|++++.++......+.|+.+|++...+.+++++|+|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            467999999999987743  689999999999999999999999997654323369999999954338999999999999


Q ss_pred             ceEEEEecCee-----eeeecCCCCHHHHHHHHHhhcccC
Q psy14086        286 PSIYVYKNGVR-----TAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       286 P~l~~~~~g~~-----~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      |++++|++|+.     ...+.| .+.+.|.++|.+.+...
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~  129 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESH  129 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTC
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhc
Confidence            99999987533     225666 69999999999987754

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.66  E-value=8.8e-16  Score=125.97  Aligned_cols=102  Identities=17%  Similarity=0.353  Sum_probs=90.8

Q ss_pred             CCceEcChhhHHHHhcC-CCEEEEEeC--CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec-----cccchhhhhhCCcc
Q psy14086         81 EGLVELTEESFEKYVSL-GNHFVKFYA--PWCGHCQSLAPVWQELASHFKTEEDVSIAKID-----CTQHRSICQSFDIK  152 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~-~~~~v~f~~--~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd-----~~~~~~~~~~~~i~  152 (324)
                      ..+..|+.++|++.+.. ++++|.||+  |||+    +.|.|.+++..+.+..++.|+.||     |+.++.+|++|+|+
T Consensus         5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~   80 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   80 (240)
T ss_dssp             TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred             CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence            46889999999998754 468999999  9999    999999999999754479999999     55589999999999


Q ss_pred             --ccceEEEEeCCe--EeeeecCCCCHHHHHHHHHhhh
Q psy14086        153 --SYPTLLWIESGK--KLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       153 --~~P~~~~~~~g~--~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                        ++||+++|++|+  ...+|.|.++.++|.+||.+..
T Consensus        81 ~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           81 KESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             GGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence              999999999987  4668999999999999999885

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.66  E-value=2.9e-16  Score=117.89  Aligned_cols=103  Identities=19%  Similarity=0.380  Sum_probs=88.4

Q ss_pred             CCeeEecc-ccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTS-ENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      +.+..++. ++|.+.+..   ++++|.||++||++|+.+.|.+++++.+ +    ++.|+.+|++.  +.+++++|+|.+
T Consensus        20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~-~----~v~~~~vd~~~--~~~l~~~~~v~~   92 (133)
T 3cxg_A           20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY-Y----YVTLVDIDVDI--HPKLNDQHNIKA   92 (133)
T ss_dssp             EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGT-E----ECEEEEEETTT--CHHHHHHTTCCS
T ss_pred             ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHh-c----CEEEEEEeccc--hHHHHHhcCCCC
Confidence            56788876 668777753   4799999999999999999999998854 3    48999999998  899999999999


Q ss_pred             cceEEEEe--cCe--eeeeecCCCCHHHHHHHHHhhccc
Q psy14086        285 FPSIYVYK--NGV--RTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       285 ~P~l~~~~--~g~--~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +|++++|+  +|+  .+..+.|. +.++|.++|.+.+..
T Consensus        93 ~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~  130 (133)
T 3cxg_A           93 LPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLE  130 (133)
T ss_dssp             SSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEE
T ss_pred             CCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHh
Confidence            99999996  887  66778887 899999999988764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.46  E-value=9.2e-18  Score=120.74  Aligned_cols=101  Identities=34%  Similarity=0.710  Sum_probs=90.4

Q ss_pred             ceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +..++.++|.+.+  .+++++|.||++||++|+.+.+.++++++.+.+  ++.|+.+|++.+..++++|++.++|+++++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            5678888888665  345789999999999999999999999999986  799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++|+...++.|..+.++|.+||++.
T Consensus        81 ~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            8888888899999999999998764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.65  E-value=9.1e-16  Score=112.68  Aligned_cols=104  Identities=25%  Similarity=0.535  Sum_probs=85.8

Q ss_pred             CCeeEec--cccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLT--SENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~--~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      ..+..++  ..+|++.+ + +++++|.||++||++|+.+.|.+++++.+ + .  ++.|+.+|++.  +++++++|+|.+
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~-~-~--~v~~~~vd~~~--~~~~~~~~~i~~   76 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEA-N-K--DVTFIKVDVDK--NGNAADAYGVSS   76 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-C-T--TSEEEEEETTT--CHHHHHHTTCCS
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-C-C--CeEEEEEECCC--CHHHHHhcCCCC
Confidence            3467774  56687544 3 56899999999999999999999999965 4 3  69999999999  899999999999


Q ss_pred             cceEEEEec----CeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        285 FPSIYVYKN----GVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       285 ~P~l~~~~~----g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +|++++|++    |+.+..+.|.. .++|.+.|.++...
T Consensus        77 ~Pt~~~~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~~~~  114 (118)
T 2f51_A           77 IPALFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFKHH  114 (118)
T ss_dssp             SSEEEEEEEETTEEEEEEEEESCC-HHHHHHHHHHHC--
T ss_pred             CCEEEEEeCCCCcceEEEeecCCC-HHHHHHHHHHhhhc
Confidence            999999987    88888888975 46699999887543

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.3e-15  Score=113.83  Aligned_cols=104  Identities=25%  Similarity=0.450  Sum_probs=88.3

Q ss_pred             ceEcChhhHHHHh-----cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCcc
Q psy14086         83 LVELTEESFEKYV-----SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIK  152 (324)
Q Consensus        83 ~~~l~~~~f~~~~-----~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~  152 (324)
                      ...++..+|.+.+     .+++++|.||++||++|+.+.+.+   ..+++.+..  ++.++.+|++  .+..++++|+|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~   85 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGEGVELRKKYGVH   85 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTTHHHHHHHTTCC
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcchHHHHHHcCCC
Confidence            3445666676655     466899999999999999999999   777777655  6899999998  578899999999


Q ss_pred             ccceEEEE-eCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        153 SYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       153 ~~P~~~~~-~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      ++|+++++ ++|+...++.|..+.++|.++|++.+.+
T Consensus        86 ~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           86 AYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             SSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            99999999 4688888899999999999999999874

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.63  E-value=2.5e-15  Score=123.31  Aligned_cols=104  Identities=18%  Similarity=0.438  Sum_probs=88.8

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeC--CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhcCC
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFA--PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~--~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~i  282 (324)
                      ..|..|++.+|++.+.. ++++|.||+  |||+    +.|.|+++|.. +....++.|+.||++.   ..+++++++|+|
T Consensus         5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~-~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAEN-SASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHH-HTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHH-hcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            56889999999998854 579999999  9999    99999999966 5434479999999432   127899999999


Q ss_pred             C--ccceEEEEecCe--eeeeecCCCCHHHHHHHHHhhc
Q psy14086        283 D--GFPSIYVYKNGV--RTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       283 ~--~~P~l~~~~~g~--~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +  ++||+++|++|+  .+..|.|.++.+.|.+||.+++
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            9  999999999997  4668999999999999999874

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1.3e-15  Score=113.89  Aligned_cols=106  Identities=21%  Similarity=0.425  Sum_probs=86.8

Q ss_pred             eeEeccccccccc-----cCCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        211 VVSLTSENFNDVI-----KSGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       211 v~~l~~~~~~~~~-----~~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      ...++..+|++.+     .+++++|.||++||++|+.+.|.+   ..++ +.+..  ++.++.+|++...+..+++.|+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~--~~~~~~vd~~~~~~~~~~~~~~v   84 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVA-DYFNR--HFVNLKMDMEKGEGVELRKKYGV   84 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHH-HHHHH--HSEEEEECSSSTTHHHHHHHTTC
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHH-HHHhc--CeEEEEEecCCcchHHHHHHcCC
Confidence            3445667777666     356899999999999999999998   6666 43433  58899999884336789999999


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .++|++++| ++|+.+..+.|..+.+.|.+||++.+..
T Consensus        85 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           85 HAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             CSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            999999999 6888888899999999999999988764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.62  E-value=1.6e-15  Score=123.19  Aligned_cols=102  Identities=21%  Similarity=0.312  Sum_probs=89.7

Q ss_pred             CCCceEc-ChhhHHHHhcC----CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcccc
Q psy14086         80 NEGLVEL-TEESFEKYVSL----GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY  154 (324)
Q Consensus        80 ~~~~~~l-~~~~f~~~~~~----~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~  154 (324)
                      ...+..+ +.++|.+.+..    .+++|.||++||++|+.+.|.|.+++..+.   .+.|+.||++ ++.+++.|+|.++
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~---~v~f~~vd~~-~~~l~~~~~i~~~  173 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS-NTGAGDRFSSDVL  173 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHH-HHTCSTTSCGGGC
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEEECC-cHHHHHHCCCCCC
Confidence            4467888 88999988832    468999999999999999999999999985   5999999998 7889999999999


Q ss_pred             ceEEEEeCCeEeeeecCCCC-------HHHHHHHHHhh
Q psy14086        155 PTLLWIESGKKLDKFQGSRT-------LETLVNYVSKM  185 (324)
Q Consensus       155 P~~~~~~~g~~~~~~~g~~~-------~~~i~~fi~~~  185 (324)
                      |++++|++|+.+.++.|..+       .++|..||.+.
T Consensus       174 PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          174 PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            99999999998888888765       48999999864

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.62  E-value=2.2e-15  Score=123.97  Aligned_cols=106  Identities=21%  Similarity=0.335  Sum_probs=89.3

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEe--CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhcC
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFF--APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQEG  281 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~--~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~  281 (324)
                      +..|..+++.+|++++.. ++++|.||  +|||+    +.|.|+++|.++.....++.|+.|||+.   .++++++.+|+
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~   90 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   90 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence            367899999999997754 57999999  99999    9999999996643203479999999886   12588999999


Q ss_pred             CC--ccceEEEEecCee--eeee--cCCCCHHHHHHHHHhhcc
Q psy14086        282 VD--GFPSIYVYKNGVR--TAEY--NGSRDLEELYQFILKHKV  318 (324)
Q Consensus       282 i~--~~P~l~~~~~g~~--~~~~--~g~~~~~~l~~fi~~~~~  318 (324)
                      |+  ++||+++|+ |+.  ...|  .|.++.+.|.+||.++++
T Consensus        91 V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           91 VDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             CCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            99  999999999 872  5678  899999999999998864

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.41  E-value=3.5e-17  Score=117.67  Aligned_cols=101  Identities=33%  Similarity=0.674  Sum_probs=87.5

Q ss_pred             eeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      +..++.++|.+.+ . +++++|.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++.+++.++|++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~v~~~~--~~~~~~~~~v~~~Pt~   77 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKE-YEG--KVKVVKVNVDE--NPNTAAQYGIRSIPTL   77 (106)
Confidence            6677888887655 2 35899999999999999999999999955 443  58999999998  8899999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ++|++|+.+..+.|..+.+.+.+||.+.
T Consensus        78 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           78 LLFKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            9999898887889999999999999765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.61  E-value=1.5e-15  Score=104.48  Aligned_cols=81  Identities=21%  Similarity=0.382  Sum_probs=74.6

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHH
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLV  179 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~  179 (324)
                      .++.||++||++|+.+.|.++++++++.+  ++.|+.+|++.+..++++||++++|++++  +|+.  ++.|..+.++|.
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   77 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELF   77 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHH
Confidence            48999999999999999999999999986  79999999999999999999999999988  7765  688988999999


Q ss_pred             HHHHhhh
Q psy14086        180 NYVSKMK  186 (324)
Q Consensus       180 ~fi~~~~  186 (324)
                      ++|++.+
T Consensus        78 ~~l~~~l   84 (85)
T 1nho_A           78 EAINDEM   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998865

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.61  E-value=3.2e-15  Score=122.94  Aligned_cols=102  Identities=21%  Similarity=0.303  Sum_probs=88.6

Q ss_pred             CCCceEc-ChhhHHHHhc----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcccc
Q psy14086         80 NEGLVEL-TEESFEKYVS----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY  154 (324)
Q Consensus        80 ~~~~~~l-~~~~f~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~  154 (324)
                      ...+..+ +.++|.+.+.    .++++|.||++||++|+.+.|.|.+++..+.+   +.|+.||++. ..+++.|+|.++
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~---v~f~kVd~d~-~~l~~~~~I~~~  186 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM---VKFCKIKASN-TGAGDRFSSDVL  186 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT---SEEEEEEHHH-HCCTTSSCTTTC
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC---CEEEEEeCCc-HHHHHHCCCCCC
Confidence            4467888 7899999884    34689999999999999999999999999964   9999999987 779999999999


Q ss_pred             ceEEEEeCCeEeeeecCC-------CCHHHHHHHHHhh
Q psy14086        155 PTLLWIESGKKLDKFQGS-------RTLETLVNYVSKM  185 (324)
Q Consensus       155 P~~~~~~~g~~~~~~~g~-------~~~~~i~~fi~~~  185 (324)
                      ||+++|++|+.+.++.|.       ++.+.|..||.+.
T Consensus       187 PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          187 PTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             SEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             CEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            999999999887777764       4678899999875

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.61  E-value=3.4e-15  Score=112.03  Aligned_cols=89  Identities=17%  Similarity=0.391  Sum_probs=80.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHH--HHHHhcCCCCCeEEEEecc---ccchhhhhhCCc---cccceEEEE-eCCeEe
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQ--ELASHFKTEEDVSIAKIDC---TQHRSICQSFDI---KSYPTLLWI-ESGKKL  166 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~--~la~~~~~~~~i~~~~vd~---~~~~~~~~~~~i---~~~P~~~~~-~~g~~~  166 (324)
                      .+++++|.||++||++|+.+.|.|.  +++..+.+  ++.++.||+   +.+..++++|+|   .++|+++++ .+|+.+
T Consensus        28 ~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           28 THKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             cCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            4678999999999999999999999  99999876  799999999   889999999999   999999999 568888


Q ss_pred             eeecC-------CCCHHHHHHHHHhhh
Q psy14086        167 DKFQG-------SRTLETLVNYVSKMK  186 (324)
Q Consensus       167 ~~~~g-------~~~~~~i~~fi~~~~  186 (324)
                      .++.|       ..+.+++.+|+++..
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHhc
Confidence            88888       679999999998764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.61  E-value=3.3e-15  Score=112.25  Aligned_cols=99  Identities=14%  Similarity=0.332  Sum_probs=83.4

Q ss_pred             cChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecc----ccchhhhhhCCccccc
Q psy14086         86 LTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDC----TQHRSICQSFDIKSYP  155 (324)
Q Consensus        86 l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~----~~~~~~~~~~~i~~~P  155 (324)
                      .+.+++...+.   +++++|.||++||++|+.+.+.+   .++++.+++   +.++.+|+    +....++++|+|.++|
T Consensus        17 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~---~~~~~vd~~~~~~~~~~l~~~~~v~~~P   93 (134)
T 2fwh_A           17 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD---TVLLQANVTANDAQDVALLKHLNVLGLP   93 (134)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT---SEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred             cCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---cEEEEEeCCCCcchHHHHHHHcCCCCCC
Confidence            34566766553   56899999999999999999999   899998864   99999999    5678899999999999


Q ss_pred             eEEEE-eCCeEe--eeecCCCCHHHHHHHHHhhhC
Q psy14086        156 TLLWI-ESGKKL--DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       156 ~~~~~-~~g~~~--~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +++++ .+|+.+  .++.|..+.++|.+++++...
T Consensus        94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            99999 557766  579999999999999987644

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.61  E-value=2.1e-15  Score=103.75  Aligned_cols=82  Identities=26%  Similarity=0.447  Sum_probs=74.9

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL  178 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i  178 (324)
                      ..++.||++||++|+.+.|.++++++++.+  ++.|+.+|++++..++++||++++|++++  +|+.  ++.|..+.++|
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l   77 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEAL   77 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHH
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHH
Confidence            468999999999999999999999999986  79999999999999999999999999988  7765  68999899999


Q ss_pred             HHHHHhhh
Q psy14086        179 VNYVSKMK  186 (324)
Q Consensus       179 ~~fi~~~~  186 (324)
                      .++|++.+
T Consensus        78 ~~~l~~~l   85 (85)
T 1fo5_A           78 VEAIKKRL   85 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.60  E-value=8.5e-15  Score=133.68  Aligned_cols=114  Identities=23%  Similarity=0.568  Sum_probs=95.2

Q ss_pred             CCCeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        208 PEPVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      ...|..+++++|++.+.+  ++++|.||++||++|+.+.|.|++++.++......+.|+.+|++...+.+++++|+|.++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            467999999999987633  589999999999999999999999997754323469999999965447899999999999


Q ss_pred             ceEEEEec----CeeeeeecCCCCHHHHHHHHHhhcccCC
Q psy14086        286 PSIYVYKN----GVRTAEYNGSRDLEELYQFILKHKVESH  321 (324)
Q Consensus       286 P~l~~~~~----g~~~~~~~g~~~~~~l~~fi~~~~~~~~  321 (324)
                      |++++|+.    |+....+.|..+.+.|.++|.+.++...
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            99999985    4444567788999999999999887543

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.59  E-value=3.9e-15  Score=111.70  Aligned_cols=103  Identities=11%  Similarity=0.172  Sum_probs=88.9

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc--c
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG--F  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~  285 (324)
                      +.|..++.++|++.+.. .+++|.||++ |++|+.+.|.++++|.+ +.+  ++.|+++|.+.  ++++++.|||++  +
T Consensus         6 plv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~-~~g--k~~f~~vd~d~--~~~~a~~~gi~~~~i   79 (133)
T 2djk_A            6 PLIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEA-QRG--VINFGTIDAKA--FGAHAGNLNLKTDKF   79 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHS-STT--TSEEEEECTTT--TGGGTTTTTCCSSSS
T ss_pred             CceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHH-hCC--eEEEEEEchHH--hHHHHHHcCCCcccC
Confidence            44888999999887754 4799999999 89999999999999965 544  69999999998  889999999999  9


Q ss_pred             ceEEEEec--Ceeeeeec--CCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYKN--GVRTAEYN--GSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~~--g~~~~~~~--g~~~~~~l~~fi~~~~~  318 (324)
                      |++++|++  |+++ .+.  |..+.+.|.+||.+++.
T Consensus        80 Ptl~i~~~~~g~~~-~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           80 PAFAIQEVAKNQKF-PFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             SEEEEECTTTCCBC-CCCSSSCCCHHHHHHHHHHHHH
T ss_pred             CEEEEEecCcCccc-CCCCccccCHHHHHHHHHHHHc
Confidence            99999986  6554 555  99999999999998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.59  E-value=4.8e-15  Score=109.62  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=85.7

Q ss_pred             CceEcChhhHHHHhcC---CCEEEEEeCC-------CCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-------ccchh
Q psy14086         82 GLVELTEESFEKYVSL---GNHFVKFYAP-------WCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-------TQHRS  144 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~---~~~~v~f~~~-------~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-------~~~~~  144 (324)
                      .+...+.++|.+.+..   ++++|.||++       ||++|+.+.|.|.++++.+++  ++.|+.+|+       +.+..
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~~~d~~~~   83 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNND   83 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCchhhhchhHH
Confidence            4566788999988753   5789999999       999999999999999999976  799999999       78889


Q ss_pred             hhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        145 ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       145 ~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      ++++|+|+++|++++|+++.....+.| .+.+.|.+||.+
T Consensus        84 ~~~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           84 FRKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            999999999999999988766554554 478889999864

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.58  E-value=9.3e-16  Score=136.57  Aligned_cols=99  Identities=26%  Similarity=0.520  Sum_probs=82.0

Q ss_pred             CCCCeeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCC------CeEEEEEecCCccchhhh
Q psy14086        207 KPEPVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH------GIVIAKVDCTQELSKDLC  277 (324)
Q Consensus       207 ~~~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~------~~~~~~id~~~~~~~~~~  277 (324)
                      .+..|..++.++|++.+..   ++++|.||++||++|+.+.|.|++++.+ +....      .+.|+.||++.  +++++
T Consensus        21 ~~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~-~~~~~g~~~~~~v~f~~VD~d~--~~~la   97 (470)
T 3qcp_A           21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGG-LKVEHGKDALQIATAAAVNCAS--EVDLC   97 (470)
T ss_dssp             TCTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHT-SCCSSCSSGGGGCEEEEEETTT--CHHHH
T ss_pred             CCCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHH-HhhhcccccCceEEEEEEECCC--CHHHH
Confidence            3567999999999998864   5799999999999999999999999965 44221      49999999999  89999


Q ss_pred             hhcCCCccceEEEEecCe--eeeeecCCCCHHH
Q psy14086        278 NQEGVDGFPSIYVYKNGV--RTAEYNGSRDLEE  308 (324)
Q Consensus       278 ~~~~i~~~P~l~~~~~g~--~~~~~~g~~~~~~  308 (324)
                      ++|+|.++||+++|++|+  ....|.|.++.+.
T Consensus        98 ~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~  130 (470)
T 3qcp_A           98 RKYDINFVPRLFFFYPRDSCRSNEECGTSSLEH  130 (470)
T ss_dssp             HHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEE
T ss_pred             HHcCCCccCeEEEEECCCceEEEEeeCCCCHHH
Confidence            999999999999997543  3556777655443

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.58  E-value=8.7e-15  Score=103.72  Aligned_cols=97  Identities=15%  Similarity=0.200  Sum_probs=81.5

Q ss_pred             CceEc-ChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccc-c
Q psy14086         82 GLVEL-TEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKS-Y  154 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~-~  154 (324)
                      ....+ +.++|++.++ +++++|.|+++||++|+.+.|.|++++..  .  ++.|+.+|++++++    ++++|||++ .
T Consensus         7 ~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~--~v~~~~vdVde~r~~Sn~IA~~~~V~h~s   82 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--R--DMDGYYLIVQQERDLSDYIAKKTNVKHES   82 (112)
T ss_dssp             CEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H--TCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred             ceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C--CceEEEEEeecCchhhHHHHHHhCCccCC
Confidence            34555 4677888884 56789999999999999999999999985  3  69999999999876    899999995 9


Q ss_pred             ceEEEEeCCeEeee-ecCCCCHHHHHHHH
Q psy14086        155 PTLLWIESGKKLDK-FQGSRTLETLVNYV  182 (324)
Q Consensus       155 P~~~~~~~g~~~~~-~~g~~~~~~i~~fi  182 (324)
                      |++++|++|+.+.+ -.+.++.+.|.+.+
T Consensus        83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           83 PQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            99999999987754 34678999888765

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.58  E-value=5.8e-15  Score=121.39  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=86.4

Q ss_pred             CCCeeEe-cccccccccc----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        208 PEPVVSL-TSENFNDVIK----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       208 ~~~v~~l-~~~~~~~~~~----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      .+.|..| +.++|.+.+.    +++++|.||++||++|+.+.|.|.++|.+ +.   .+.|+.+|++.   ..++..|+|
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~-~~---~v~f~kVd~d~---~~l~~~~~I  183 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAE-YP---MVKFCKIKASN---TGAGDRFSS  183 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHH-CT---TSEEEEEEHHH---HCCTTSSCT
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHH-CC---CCEEEEEeCCc---HHHHHHCCC
Confidence            3678888 6788998884    35799999999999999999999999966 43   49999999875   668889999


Q ss_pred             CccceEEEEecCeeeeeecCC-------CCHHHHHHHHHhhc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGS-------RDLEELYQFILKHK  317 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~-------~~~~~l~~fi~~~~  317 (324)
                      .++||+++|++|+.+..+.|.       ++.+.|..||.++.
T Consensus       184 ~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          184 DVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             TTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             CCCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence            999999999999887666664       45678999998763

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.58  E-value=6.5e-16  Score=115.45  Aligned_cols=104  Identities=26%  Similarity=0.578  Sum_probs=91.0

Q ss_pred             CCceEc-ChhhHHHHhc-----CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcccc
Q psy14086         81 EGLVEL-TEESFEKYVS-----LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSY  154 (324)
Q Consensus        81 ~~~~~l-~~~~f~~~~~-----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~  154 (324)
                      ..+..+ +.++|++.+.     +++++|.||++||++|+.+.|.|.+++..++   ++.|+.+|++.+..++++|+|+++
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   90 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEAM   90 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCSS
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCcc
Confidence            356667 4588887773     4578999999999999999999999999986   499999999999999999999999


Q ss_pred             ceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        155 PTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       155 P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                      |+++++++|+...++.| .+.++|.++|.+.+..
T Consensus        91 Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           91 PTFLFIKDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             CCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             ceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence            99999988988878888 5888999999998874

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.58  E-value=9.2e-15  Score=100.50  Aligned_cols=82  Identities=22%  Similarity=0.396  Sum_probs=72.4

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCH
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL  306 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~  306 (324)
                      +.++.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|++++  +|+.  .+.|..+.
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~   74 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANE-MPD--AVEVEYINVME--NPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTK   74 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHH-CSS--SEEEEEEESSS--SCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSS
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHH-cCC--ceEEEEEECCC--CHHHHHHCCCcccCEEEE--CCEE--eeecCCCH
Confidence            578999999999999999999999955 443  69999999998  889999999999999988  7765  68898899


Q ss_pred             HHHHHHHHhhc
Q psy14086        307 EELYQFILKHK  317 (324)
Q Consensus       307 ~~l~~fi~~~~  317 (324)
                      +++.++|++.+
T Consensus        75 ~~l~~~l~~~l   85 (85)
T 1fo5_A           75 EALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.57  E-value=3.6e-15  Score=121.06  Aligned_cols=102  Identities=19%  Similarity=0.317  Sum_probs=87.6

Q ss_pred             CCCeeEe-ccccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        208 PEPVVSL-TSENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       208 ~~~v~~l-~~~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      .+.|..+ +.++|.+.+.+    ++++|.||++||++|+.+.|.|.+++.+ +.   .+.|+.+|++   +++++..|+|
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~-~~---~v~f~~vd~~---~~~l~~~~~i  170 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAE-YP---MVKFCKIRAS---NTGAGDRFSS  170 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTT-CT---TSEEEEEEHH---HHTCSTTSCG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHH-CC---CeEEEEEECC---cHHHHHHCCC
Confidence            3668888 78889888742    5799999999999999999999999965 32   6999999987   4778899999


Q ss_pred             CccceEEEEecCeeeeeecCCCCH-------HHHHHHHHhh
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDL-------EELYQFILKH  316 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~-------~~l~~fi~~~  316 (324)
                      .++||+++|++|+.+..+.|..+.       +.|..||.++
T Consensus       171 ~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          171 DVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             GGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            999999999999988888887654       8999999875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.57  E-value=9.4e-15  Score=100.47  Aligned_cols=81  Identities=23%  Similarity=0.385  Sum_probs=71.9

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE  307 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~  307 (324)
                      .++.||++||++|+.+.|.+++++.+ +..  ++.++.+|++.  ++++++++++.++|++++  +|+.  .+.|..+.+
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~   74 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKE-FGD--KIDVEKIDIMV--DREKAIEYGLMAVPAIAI--NGVV--RFVGAPSRE   74 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHH-HCS--SCCEEEECTTT--CGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHH-hcC--CeEEEEEECCC--CHHHHHhCCceeeCEEEE--CCEE--EEccCCCHH
Confidence            58899999999999999999999965 443  68999999998  889999999999999988  7766  678988999


Q ss_pred             HHHHHHHhhc
Q psy14086        308 ELYQFILKHK  317 (324)
Q Consensus       308 ~l~~fi~~~~  317 (324)
                      .+.++|.+.+
T Consensus        75 ~l~~~l~~~l   84 (85)
T 1nho_A           75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.56  E-value=7.1e-15  Score=105.71  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      +.++|+||++||++|+.+.+.+....... .....+.+..+|++.+...+++..++|.++||+++|++|+++.+..|...
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~-a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~   97 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAEIAPQYPLT-DEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG   97 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHTTTTGGGS-HHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHhhHHHh-hhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence            56999999999999999875432221110 00002667788887733467888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q psy14086        306 LEELYQFILKHKV  318 (324)
Q Consensus       306 ~~~l~~fi~~~~~  318 (324)
                      .+.+..||.+.+.
T Consensus        98 ~~~f~~~L~~~l~  110 (116)
T 3dml_A           98 EDFFWPMLARLIG  110 (116)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998765

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.56  E-value=8.7e-16  Score=136.76  Aligned_cols=107  Identities=21%  Similarity=0.494  Sum_probs=87.2

Q ss_pred             CCCceEcChhhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCC------CeEEEEeccccchhhhhhCC
Q psy14086         80 NEGLVELTEESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEE------DVSIAKIDCTQHRSICQSFD  150 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~------~i~~~~vd~~~~~~~~~~~~  150 (324)
                      ...+..++.++|++.+..   ++++|.||++||++|+.+.|.|.++++.+....      .+.|+.||++.+..++++|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            457899999999988743   579999999999999999999999999997432      49999999999999999999


Q ss_pred             ccccceEEEEeCCe--EeeeecCC------------CCHHHHHHHHHhhh
Q psy14086        151 IKSYPTLLWIESGK--KLDKFQGS------------RTLETLVNYVSKMK  186 (324)
Q Consensus       151 i~~~P~~~~~~~g~--~~~~~~g~------------~~~~~i~~fi~~~~  186 (324)
                      |+++|++++|++|+  ...+|.|.            ++.+++...++.++
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Li  151 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLV  151 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHH
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            99999999997643  34456665            34555555555443

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.56  E-value=5e-14  Score=117.55  Aligned_cols=168  Identities=11%  Similarity=0.126  Sum_probs=131.9

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCC-----ccccccc-CCCCChHHHHHHHHhhhcCCCCCCCCCCCCCC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGS-----ESEASKF-RGTRDLPTLTNFINEQISETPKEPSDKPIVNE   81 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~-----~~~~~~y-~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   81 (324)
                      +++.|+.+.   +.+++++|+|.+ |+|++|+.+.     ......| .|.++.++|.+|+....-|             
T Consensus        52 ~~~~F~~~~---~~~v~~~~~~~~-p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~P-------------  114 (252)
T 2h8l_A           52 DNYRFAHTN---VESLVNEYDDNG-EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFG-------------  114 (252)
T ss_dssp             TTSCEEEEC---CHHHHHHHCSSS-EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSC-------------
T ss_pred             cCcEEEEEC---hHHHHHHhCCCC-CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhcccC-------------
Confidence            567787774   677999999997 9999999531     0235789 9999999999999998876             


Q ss_pred             CceEcChhhHHHHhcCCCEEEEEeCCCCH---h-HhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCc--c--
Q psy14086         82 GLVELTEESFEKYVSLGNHFVKFYAPWCG---H-CQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDI--K--  152 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~~v~f~~~~c~---~-c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i--~--  152 (324)
                      .+.++|.+++..+ ...++++.|+...+.   . ...+...+.++|++++++ ..+.|+.+|+.....+++.||+  .  
T Consensus       115 lv~e~t~~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~  193 (252)
T 2h8l_A          115 ICPHMTEDNKDLI-QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAG  193 (252)
T ss_dssp             SSCEECTTTHHHH-SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSC
T ss_pred             CeeecccccHhhh-cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccC
Confidence            8999999999886 456777777765432   1 235788999999999871 2399999999988889999999  3  


Q ss_pred             ccceEEEEeCCeEeeeecCCCCHHH--HHHHHHhhhCCCCCCC
Q psy14086        153 SYPTLLWIESGKKLDKFQGSRTLET--LVNYVSKMKGPLNKKA  193 (324)
Q Consensus       153 ~~P~~~~~~~g~~~~~~~g~~~~~~--i~~fi~~~~~~~~~~~  193 (324)
                      .+|+++++........+.+.++.+.  |.+|+++++.|+.++.
T Consensus       194 ~~P~v~i~~~~~~ky~~~~~~t~~~~~i~~F~~~~~~Gkl~~~  236 (252)
T 2h8l_A          194 EIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRY  236 (252)
T ss_dssp             SSCEEEEECTTSCEEECCSCCCTTSHHHHHHHHHHHHTCSCCC
T ss_pred             CCCEEEEEeCcCcEecCCcccCcchHHHHHHHHHHHCCCcccc
Confidence            5899999865333334667888888  9999999999986543

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.56  E-value=9.1e-15  Score=109.69  Aligned_cols=87  Identities=22%  Similarity=0.446  Sum_probs=76.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHH--HHHHHhhcCCCCeEEEEEec---CCccchhhhhhcCC---CccceEEEE-ecCe
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWE--ELGTKLLDNKHGIVIAKVDC---TQELSKDLCNQEGV---DGFPSIYVY-KNGV  295 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~--~~a~~~~~~~~~~~~~~id~---~~~~~~~~~~~~~i---~~~P~l~~~-~~g~  295 (324)
                      +++++|.||++||++|+.+.|.|.  +++.. +..  ++.++.+|+   +.  +.+++++|+|   .++|++++| ++|+
T Consensus        29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~--~~~~~~vd~~~~~~--~~~l~~~~~v~~~~~~Pt~~~~d~~G~  103 (133)
T 3fk8_A           29 HKPTLLVFGANWCTDCRALDKSLRNQKNTAL-IAK--HFEVVKIDVGNFDR--NLELSQAYGDPIQDGIPAVVVVNSDGK  103 (133)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHTSHHHHHH-HHH--HCEEEEEECTTTTS--SHHHHHHTTCGGGGCSSEEEEECTTSC
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHH-hcC--CEEEEEEeCCcccc--hHHHHHHhCCccCCccceEEEECCCCC
Confidence            568999999999999999999999  88855 433  599999999   76  8899999999   999999999 7898


Q ss_pred             eeeeecC-------CCCHHHHHHHHHhh
Q psy14086        296 RTAEYNG-------SRDLEELYQFILKH  316 (324)
Q Consensus       296 ~~~~~~g-------~~~~~~l~~fi~~~  316 (324)
                      .+..+.|       ..+.+.+.+||++.
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          104 VRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEEEecCCcccccccCCHHHHHHHHHHh
Confidence            8878888       67899999999865

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.56  E-value=1.1e-14  Score=104.70  Aligned_cols=90  Identities=9%  Similarity=0.163  Sum_probs=71.1

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc--hhhhhhCCccccceEEEEeCCeEeeeecCCCCH
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH--RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~  175 (324)
                      +.++|+||++||++|+.+.+.+............+.+..+|++.+  ..++.+++|.++||+++|++|+.+.+..|..+.
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~~   98 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPGE   98 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCCH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCCH
Confidence            467999999999999999864433322110000256777777654  579999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhC
Q psy14086        176 ETLVNYVSKMKG  187 (324)
Q Consensus       176 ~~i~~fi~~~~~  187 (324)
                      +.+.+|+++.+.
T Consensus        99 ~~f~~~L~~~l~  110 (116)
T 3dml_A           99 DFFWPMLARLIG  110 (116)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.55  E-value=1.1e-15  Score=114.19  Aligned_cols=106  Identities=27%  Similarity=0.559  Sum_probs=90.1

Q ss_pred             CCCeeEec-ccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC
Q psy14086        208 PEPVVSLT-SENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG  281 (324)
Q Consensus       208 ~~~v~~l~-~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~  281 (324)
                      ...+..++ .++|++.+.     +++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  +.+++++|+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~-~~---~v~~~~v~~~~--~~~~~~~~~   86 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKK-FP---GAVFLKVDVDE--LKEVAEKYN   86 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHH-CT---TBCCEECCTTT--SGGGHHHHT
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHH-CC---CCEEEEEeccc--hHHHHHHcC
Confidence            35677775 477887774     45899999999999999999999999965 43   58999999998  899999999


Q ss_pred             CCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        282 VDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       282 i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      +.++|++++|++|+.+..+.| .+.+.|.++|.+.++..
T Consensus        87 v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~~  124 (130)
T 1wmj_A           87 VEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHVGAT  124 (130)
T ss_dssp             CCSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSSS
T ss_pred             CCccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhcc
Confidence            999999999999988877888 58899999999987654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.55  E-value=1.3e-14  Score=108.92  Aligned_cols=105  Identities=19%  Similarity=0.384  Sum_probs=82.3

Q ss_pred             CeeEec-ccccccccc---CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhc
Q psy14086        210 PVVSLT-SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQE  280 (324)
Q Consensus       210 ~v~~l~-~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~  280 (324)
                      .+..+. .+++...+.   +++++|.||++||++|+.+.|.+   .+++.. +.   ++.++.+|++.  ....+++++|
T Consensus        12 ~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~-~~---~~~~~~vd~~~~~~~~~~l~~~~   87 (134)
T 2fwh_A           12 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKA-LA---DTVLLQANVTANDAQDVALLKHL   87 (134)
T ss_dssp             CCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHH-TT---TSEEEEEECTTCCHHHHHHHHHT
T ss_pred             CcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHH-hc---CcEEEEEeCCCCcchHHHHHHHc
Confidence            344343 344665553   56899999999999999999998   888854 43   48999999954  1267889999


Q ss_pred             CCCccceEEEE-ecCeee--eeecCCCCHHHHHHHHHhhcc
Q psy14086        281 GVDGFPSIYVY-KNGVRT--AEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       281 ~i~~~P~l~~~-~~g~~~--~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +|.++|++++| ++|+.+  ..+.|..+.++|.++|.+.-+
T Consensus        88 ~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           88 NVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             TCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             CCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            99999999999 788876  678999999999999987543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.53  E-value=1.9e-14  Score=106.37  Aligned_cols=100  Identities=18%  Similarity=0.313  Sum_probs=82.0

Q ss_pred             CeeEeccccccccccC---CcEEEEEeCC-------CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEec-------CCcc
Q psy14086        210 PVVSLTSENFNDVIKS---GTVFIKFFAP-------WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC-------TQEL  272 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~---~~~~v~f~~~-------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~-------~~~~  272 (324)
                      .+...+.++|.+.+.+   ++++|.||++       ||++|+.+.|.+++++.+ +..  ++.|+.+|+       +.  
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~-~~~--~~~~~~vd~~~~~~~~d~--   80 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKH-ISE--GCVFIYCQVGEKPYWKDP--   80 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGG-CCT--TEEEEEEECCCHHHHHCT--
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHH-cCC--CcEEEEEECCCchhhhch--
Confidence            4566677778877753   5899999999       999999999999999954 443  699999999       56  


Q ss_pred             chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        273 SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       273 ~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      +.++++.|+|.++||+++|+++.....+.| .+.+.|.+||.+
T Consensus        81 ~~~~~~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           81 NNDFRKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             TCHHHHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             hHHHHHHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            788999999999999999988766655555 477889998864

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.51  E-value=7.4e-13  Score=110.23  Aligned_cols=167  Identities=11%  Similarity=0.056  Sum_probs=130.1

Q ss_pred             CceEEEEeeCccchhhhccCCCccCCceEEEecCC-----cccccccC--CCCChHHHHHHHHhhhcCCCCCCCCCCCCC
Q psy14086          8 SRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGS-----ESEASKFR--GTRDLPTLTNFINEQISETPKEPSDKPIVN   80 (324)
Q Consensus         8 ~~i~~~~vd~~~~~~l~~~~~I~~~Pti~~f~~~~-----~~~~~~y~--G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   80 (324)
                      +++.|+.+.   +++++++|+|++ |+|++|+.+.     ......|.  |.++.++|.+|+....-+            
T Consensus        53 ~~~~F~~t~---~~~v~~~~~v~~-p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~P------------  116 (250)
T 3ec3_A           53 EDYKFHHTF---STEIAKFLKVSL-GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALP------------  116 (250)
T ss_dssp             TTCCEEEEC---CHHHHHHHTCCS-SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSC------------
T ss_pred             cCcEEEEEC---cHHHHHHcCCCC-CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCC------------
Confidence            567788764   778999999988 9999999521     02356788  578999999999999876            


Q ss_pred             CCceEcChhhHHHHhcCCCEEEEEeCCC-----CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc--
Q psy14086         81 EGLVELTEESFEKYVSLGNHFVKFYAPW-----CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS--  153 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~~~~v~f~~~~-----c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--  153 (324)
                       .+.++|.+++..+....++++.|+...     ......+...++++|++++   ++.|+.+|+..+...++.||+..  
T Consensus       117 -lv~e~t~~n~~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~~~  192 (250)
T 3ec3_A          117 -LVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSESG  192 (250)
T ss_dssp             -TEEEECTTTHHHHSCSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSSCS
T ss_pred             -ceeecCccchhhhhccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCccC
Confidence             899999999988776667776677532     2334668899999999998   59999999998888999999974  


Q ss_pred             c-ceEEEEeCCeEeeeec-CCCCHHHHHHHHHhhhCCCCCCCC
Q psy14086        154 Y-PTLLWIESGKKLDKFQ-GSRTLETLVNYVSKMKGPLNKKAD  194 (324)
Q Consensus       154 ~-P~~~~~~~g~~~~~~~-g~~~~~~i~~fi~~~~~~~~~~~~  194 (324)
                      . |.++++..+.....+. +.++.++|.+|+++++.|+.++..
T Consensus       193 ~~p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gkl~p~~  235 (250)
T 3ec3_A          193 GDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGKLKPVI  235 (250)
T ss_dssp             CSCEEEEECTTSCEEECCCCSCCHHHHHHHHHHHHTTCCCCCC
T ss_pred             CCcEEEEEcCCCceecCCcccCCHHHHHHHHHHHHCCCcccee
Confidence            4 4777776543333344 678999999999999999865543

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.51  E-value=7.1e-14  Score=99.04  Aligned_cols=98  Identities=17%  Similarity=0.238  Sum_probs=80.2

Q ss_pred             CCeeEecc-cccccccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh----hhhhcCC
Q psy14086        209 EPVVSLTS-ENFNDVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD----LCNQEGV  282 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i  282 (324)
                      .....|+. +.|+++++ +++++|+|+++||++|+.+.|.+++++.+   .  ++.|+.+|.++  +++    ++++++|
T Consensus         6 ~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~---~--~v~~~~vdVde--~r~~Sn~IA~~~~V   78 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE---R--DMDGYYLIVQQ--ERDLSDYIAKKTNV   78 (112)
T ss_dssp             GCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH---H--TCCEEEEEGGG--GHHHHHHHHHHHTC
T ss_pred             cceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc---C--CceEEEEEeec--CchhhHHHHHHhCC
Confidence            34566654 44888885 56899999999999999999999999852   2  68899999988  655    7999999


Q ss_pred             C-ccceEEEEecCeeeee-ecCCCCHHHHHHHH
Q psy14086        283 D-GFPSIYVYKNGVRTAE-YNGSRDLEELYQFI  313 (324)
Q Consensus       283 ~-~~P~l~~~~~g~~~~~-~~g~~~~~~l~~fi  313 (324)
                      + ..|++++|++|+.+.. -.|..+.+.|.+.|
T Consensus        79 ~h~sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           79 KHESPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             CCCSSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             ccCCCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            9 5999999999988754 45778988887654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.50  E-value=8.1e-13  Score=121.68  Aligned_cols=178  Identities=13%  Similarity=0.153  Sum_probs=133.8

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCe-EeeeecCCCCH
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGK-KLDKFQGSRTL  175 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~-~~~~~~g~~~~  175 (324)
                      .+++-+.++...|..|..+...+++++..- .  ++.+...+  ..       . ...|++.+.++|+ .-.+|.|-..-
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s-~--~i~~~~~~--~~-------~-~~~p~~~~~~~~~~~~i~f~g~p~g   84 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAELS-D--KVTFKEDN--TL-------P-VRKPSFLITNPGSQQGPRFAGSPLG   84 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTC-T--TEEEEECT--TS-------S-SCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHHhC-C--ceEEEEcC--Cc-------c-cCCCEEEEecCCCcceEEEeccCcc
Confidence            346666667777999999999999987653 2  67764332  11       0 4679999987764 33579998888


Q ss_pred             HHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccccc--cCCcEEEEEeCCCChhhhhhhHhHHHHHHH
Q psy14086        176 ETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTK  253 (324)
Q Consensus       176 ~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~  253 (324)
                      .++..|+...+.-.                   ..-..++++.++.+.  .....++.||++||++|+.+.|.+++++..
T Consensus        85 ~e~~s~~~~l~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~  145 (521)
T 1hyu_A           85 HEFTSLVLALLWTG-------------------GHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVL  145 (521)
T ss_dssp             GGHHHHHHHHHHHT-------------------TCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhc-------------------CCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhH
Confidence            88888888876521                   122344555555553  234579999999999999999999999854


Q ss_pred             hhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        254 LLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       254 ~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                       +.   ++.+..+|.+.  ++++.++++|.++|++++  +|+.+.  .|..+.++|.+|+.+.
T Consensus       146 -~~---~v~~~~vd~~~--~~~~~~~~~i~svPt~~i--~g~~~~--~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          146 -NP---RIKHTAIDGGT--FQNEITERNVMGVPAVFV--NGKEFG--QGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             -CT---TEEEEEEETTT--CHHHHHHTTCCSSSEEEE--TTEEEE--ESCCCHHHHHHHHCCS
T ss_pred             -cC---ceEEEEEechh--hHHHHHHhCCCccCEEEE--CCEEEe--cCCCCHHHHHHHHhhc
Confidence             32   69999999998  899999999999999977  777653  4889999999998654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.49  E-value=1.9e-13  Score=105.16  Aligned_cols=89  Identities=18%  Similarity=0.370  Sum_probs=77.2

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccc-----------hhhhhhCCccccceEEEE
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQH-----------RSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~-----------~~~~~~~~i~~~P~~~~~  160 (324)
                      ..++++|.|| ++||++|+.+.|.+   .++.+.+..  ++.++.+|++..           ..+++.|+|.++|+++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEE
Confidence            4678999999 99999999999999   777766644  699999998764           489999999999999999


Q ss_pred             -eCCeEeeeecCCC--CHHHHHHHHHhhhC
Q psy14086        161 -ESGKKLDKFQGSR--TLETLVNYVSKMKG  187 (324)
Q Consensus       161 -~~g~~~~~~~g~~--~~~~i~~fi~~~~~  187 (324)
                       .+|+.+.++ |..  +.+.+.++|++.+.
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence             458888888 988  99999999998875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.48  E-value=3.9e-14  Score=111.14  Aligned_cols=103  Identities=12%  Similarity=0.247  Sum_probs=78.4

Q ss_pred             eEeccccccccc-----cCCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhh-------
Q psy14086        212 VSLTSENFNDVI-----KSGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDL-------  276 (324)
Q Consensus       212 ~~l~~~~~~~~~-----~~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~-------  276 (324)
                      ..++..+|++.+     ++++++|.||++||++|+.+.+.+   .++. +.+..  ++.++.+|++.  ..++       
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~-~~~~~--~~~~v~v~~d~--~~~~~~~~~~~  103 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVS-SIINN--DYVLITLYVDN--KTPLTEPVKIM  103 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHH-HHHHH--HCEEEEEETTC--CCEEEEEEEEE
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHH-HHhcC--CEEEEEEecCc--ccccchhhhhh
Confidence            344555666555     246899999999999999973333   4444 22332  58999999887  4443       


Q ss_pred             -------------------hhhcCCCccceEEEE-ecCeeeeeecCCCC-HHHHHHHHHhhccc
Q psy14086        277 -------------------CNQEGVDGFPSIYVY-KNGVRTAEYNGSRD-LEELYQFILKHKVE  319 (324)
Q Consensus       277 -------------------~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~-~~~l~~fi~~~~~~  319 (324)
                                         ...|++.++|+++++ ++|+.+..+.|..+ .+.+.++|++.+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~  167 (172)
T 3f9u_A          104 ENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLEN  167 (172)
T ss_dssp             ETTEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHH
Confidence                               688999999999999 68888888889988 99999999987754

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.48  E-value=6.1e-14  Score=110.07  Aligned_cols=90  Identities=13%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccchhh--------------------------h
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQHRSI--------------------------C  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~~~~--------------------------~  146 (324)
                      ++++++|.||++||++|+.+.+.+   .++.+.++.  ++.++.+|++....+                          +
T Consensus        46 ~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (172)
T 3f9u_A           46 HNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQR  123 (172)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHH
Confidence            456899999999999999975444   555555544  699999999876554                          7


Q ss_pred             hhCCccccceEEEEe-CCeEeeeecCCCC-HHHHHHHHHhhhC
Q psy14086        147 QSFDIKSYPTLLWIE-SGKKLDKFQGSRT-LETLVNYVSKMKG  187 (324)
Q Consensus       147 ~~~~i~~~P~~~~~~-~g~~~~~~~g~~~-~~~i~~fi~~~~~  187 (324)
                      +.|+|+++|++++++ +|+.+.++.|..+ .+++.++|++.+.
T Consensus       124 ~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          124 VKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             HHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence            899999999999994 5888878889988 9999999998764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.22  E-value=3e-15  Score=111.91  Aligned_cols=92  Identities=13%  Similarity=0.291  Sum_probs=80.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEE--eCCeE--e
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWI--ESGKK--L  166 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~--~~g~~--~  166 (324)
                      ..++++|+||++||++|+.+.|.+   .++++.+.+  ++.++.+|++  .+..++++|+|.++|+++++  ++|+.  .
T Consensus        18 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~   95 (130)
T 2lst_A           18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEV   95 (130)
Confidence            345789999999999999999999   899988876  7999999984  66889999999999999999  45776  6


Q ss_pred             eeecCCCCHHHHHHHHHhhhCCC
Q psy14086        167 DKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       167 ~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      .++.|..+.+.|.++|++.+.+.
T Consensus        96 ~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           96 GRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            78899999999999999988744

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.21  E-value=3.6e-15  Score=111.41  Aligned_cols=92  Identities=21%  Similarity=0.331  Sum_probs=77.4

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEE--ecCee--e
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVY--KNGVR--T  297 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~--~~g~~--~  297 (324)
                      +++++|.||++||++|+.+.|.+   .+++.. +..  ++.++.+|++..++.++++.|+|.++|++++|  ++|+.  +
T Consensus        19 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~   95 (130)
T 2lst_A           19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRL-LEA--RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEV   95 (130)
Confidence            45899999999999999999999   888843 443  58899999854336889999999999999999  56777  7


Q ss_pred             eeecCCCCHHHHHHHHHhhccc
Q psy14086        298 AEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       298 ~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ..+.|..+.+.|.++|++.++.
T Consensus        96 ~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           96 GRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            7789999999999999988764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.47  E-value=1.5e-13  Score=105.66  Aligned_cols=90  Identities=19%  Similarity=0.307  Sum_probs=75.2

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCc---------cchhhhhhcCCCccceEEEE
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQE---------LSKDLCNQEGVDGFPSIYVY  291 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~i~~~P~l~~~  291 (324)
                      +++++|.|| ++||++|+.+.|.+   .+++ +....  ++.++.+|++..         .+.++++.|+|.++|+++++
T Consensus        47 gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~-~~~~~--~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~  123 (154)
T 2ju5_A           47 HKPIGLFFTGSDWCMWCIKMQDQILQSSEFK-HFAGV--HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFI  123 (154)
T ss_dssp             CCCEEEEEECTTTCHHHHHHHHHTTTSHHHH-HHHHH--HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEE
T ss_pred             CCeEEEEEeCCCCCHhHHHHHHHHhcCHHHH-HHhcC--cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEE
Confidence            568999999 99999999999999   6776 33333  589999998761         12378899999999999999


Q ss_pred             -ecCeeeeeecCCC--CHHHHHHHHHhhcc
Q psy14086        292 -KNGVRTAEYNGSR--DLEELYQFILKHKV  318 (324)
Q Consensus       292 -~~g~~~~~~~g~~--~~~~l~~fi~~~~~  318 (324)
                       ++|+.+..+ |..  +.+.+.++|++.++
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence             688888788 988  89999999998765

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.47  E-value=6.8e-13  Score=101.01  Aligned_cols=103  Identities=13%  Similarity=0.302  Sum_probs=85.2

Q ss_pred             eEcChhhHHHH-hcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-----------------------
Q psy14086         84 VELTEESFEKY-VSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-----------------------  139 (324)
Q Consensus        84 ~~l~~~~f~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----------------------  139 (324)
                      ..++.+.+... ...++++|.||++||++|+...+.+.++++++++  ++.|+.+++                       
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   92 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQ   92 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCS
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEEcCCCccccCHHHHHHHHHHcCCCc
Confidence            45555544332 2456889999999999999999999999999987  488888885                       


Q ss_pred             ----ccchhhhhhCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        140 ----TQHRSICQSFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       140 ----~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                          +....+++.|++.++|++++++ +|+...++.|..+.++|.++|++.+..
T Consensus        93 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           93 PIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             CEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             ceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence                3456799999999999999994 588778889999999999999998863

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.46  E-value=2e-13  Score=91.91  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=64.7

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCC-CHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSR-TLETLV  179 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~-~~~~i~  179 (324)
                      .|.||++||++|+.+.|.+++++..+..  ++.++.+|   +..++++|||+++|++++  +|+...+  |.. +.++|.
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~   73 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIK   73 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHH
Confidence            5889999999999999999999999986  79999998   678999999999999988  7766543  887 999998


Q ss_pred             HHH
Q psy14086        180 NYV  182 (324)
Q Consensus       180 ~fi  182 (324)
                      +|+
T Consensus        74 ~~l   76 (77)
T 1ilo_A           74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            886

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.46  E-value=1.3e-13  Score=98.80  Aligned_cols=76  Identities=24%  Similarity=0.416  Sum_probs=62.1

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----cchhhhhhCCccccceEEEEeCCeEeeeecCCC
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSR  173 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~  173 (324)
                      ++.+|.||++||++|+.+.|.|.+++..+.      ++.++.+    ++..++++|+|+++|++++  +|+   .|.|..
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~---~~~G~~   81 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---TYTGVR   81 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE---EEESCC
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE---EecCCC
Confidence            345899999999999999999999997663      3333322    5788999999999999877  675   388999


Q ss_pred             CHHHHHHHHHh
Q psy14086        174 TLETLVNYVSK  184 (324)
Q Consensus       174 ~~~~i~~fi~~  184 (324)
                      +.++|.+|+.-
T Consensus        82 ~~~~l~~~~~~   92 (106)
T 3kp8_A           82 SLEALAVASGY   92 (106)
T ss_dssp             CHHHHHHHHTC
T ss_pred             CHHHHHHHhCC
Confidence            99999999843

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.44  E-value=1.4e-12  Score=101.39  Aligned_cols=107  Identities=17%  Similarity=0.388  Sum_probs=83.4

Q ss_pred             CeeEeccccccc-cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhc--------
Q psy14086        210 PVVSLTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE--------  280 (324)
Q Consensus       210 ~v~~l~~~~~~~-~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------  280 (324)
                      .+..++++.+.- ...+++++|.||++||++|+...|.+.+++.++...  ++.++.++++.  ..+....+        
T Consensus        18 ~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~v~~v~v~~d~--~~~~~~~~~~~~~~~~   93 (165)
T 3or5_A           18 SGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR--GFTFVGIAVNE--QLPNVKNYMKTQGIIY   93 (165)
T ss_dssp             EEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT--TEEEEEEECSC--CHHHHHHHHHHHTCCS
T ss_pred             eeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCC--CHHHHHHHHHHcCCCC
Confidence            455555555432 224578999999999999999999999999664332  59999999887  55555555        


Q ss_pred             -------------------CCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        281 -------------------GVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       281 -------------------~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                                         ++.++|+++++ ++|+.+..+.|..+.+.+.++|++.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A           94 PVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             CEEECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred             ceEecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence                               89999999999 68888888899999999999999988754

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.44  E-value=1.8e-12  Score=98.66  Aligned_cols=105  Identities=20%  Similarity=0.316  Sum_probs=84.3

Q ss_pred             eEeccccccc-cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--------------------
Q psy14086        212 VSLTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--------------------  270 (324)
Q Consensus       212 ~~l~~~~~~~-~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------  270 (324)
                      ..++++.+.. ...+++++|.||++||++|+...|.+.+++.+ +..  ++.++.++++.                    
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~-~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDK-YQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHH-hcC--CcEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            5666666542 23457899999999999999999999999965 444  38888888542                    


Q ss_pred             -----ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        271 -----ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       271 -----~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                           .....+.+.|++.++|+++++ ++|+.+..+.|..+.+.+.++|++.+..
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence                 114678899999999999999 6888888889988999999999988764

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.44  E-value=1.3e-13  Score=104.88  Aligned_cols=95  Identities=16%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHH--HhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-cCeeeeeec
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGT--KLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYN  301 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~--~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~  301 (324)
                      +++++|.||++||++|+.+.|.+.+...  ++...  ++..+.+|. .  ..++...+++.++||+++|+ +|+.+....
T Consensus        44 ~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~--~fv~V~vD~-e--~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~  118 (151)
T 3ph9_A           44 KKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN--KFIMLNLMH-E--TTDKNLSPDGQYVPRIMFVDPSLTVRADIA  118 (151)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH--TCEEEEESS-C--CSCGGGCTTCCCSSEEEEECTTSCBCTTCC
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc--CeEEEEecC-C--chhhHhhcCCCCCCEEEEECCCCCEEEEEe
Confidence            5789999999999999999999976431  22221  344444442 2  35567789999999999997 888877777


Q ss_pred             CC----------CCHHHHHHHHHhhcccCCCCC
Q psy14086        302 GS----------RDLEELYQFILKHKVESHDEL  324 (324)
Q Consensus       302 g~----------~~~~~l~~fi~~~~~~~~~el  324 (324)
                      |.          .+.+.+.+.|++.+...+.||
T Consensus       119 G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~~~  151 (151)
T 3ph9_A          119 GRYSNRLYTYEPRDLPLLIENMKKALRLIQSEL  151 (151)
T ss_dssp             CSCTTSTTCCCGGGHHHHHHHHHHHHSCCC---
T ss_pred             CCcCCcccccchhhHHHHHHHHHHHHHHHhccC
Confidence            76          345678888888888888776

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.44  E-value=1.1e-13  Score=99.05  Aligned_cols=77  Identities=23%  Similarity=0.430  Sum_probs=61.7

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--c--cchhhhhhcCCCccceEEEEecCeeeeeec
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--E--LSKDLCNQEGVDGFPSIYVYKNGVRTAEYN  301 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~--~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~  301 (324)
                      ++++|.||++||++|+.+.|.|++++.+ +.        .+|++.  .  .++++++.|+|+++||+++  +|+.   |.
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~-~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~   78 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQ-VP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YT   78 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGG-SC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHh-CC--------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ec
Confidence            4678999999999999999999999844 22        344441  1  2688999999999999877  7753   78


Q ss_pred             CCCCHHHHHHHHHhh
Q psy14086        302 GSRDLEELYQFILKH  316 (324)
Q Consensus       302 g~~~~~~l~~fi~~~  316 (324)
                      |.++.+.|.+|+.-.
T Consensus        79 G~~~~~~l~~~~~~~   93 (106)
T 3kp8_A           79 GVRSLEALAVASGYP   93 (106)
T ss_dssp             SCCCHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHhCCc
Confidence            999999999998543

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.43  E-value=9.5e-14  Score=107.95  Aligned_cols=98  Identities=17%  Similarity=0.292  Sum_probs=79.2

Q ss_pred             hhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh-hhhhCCc--cccceEEEE-eCC
Q psy14086         89 ESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-ICQSFDI--KSYPTLLWI-ESG  163 (324)
Q Consensus        89 ~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~-~~~~~~i--~~~P~~~~~-~~g  163 (324)
                      +.|.... ..++++|.||++||++|+.+.|.|.+++..+..  ++.|+.||++.+.. ++..|++  .++|+++++ .+|
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G  114 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG  114 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC
Confidence            5565544 566899999999999999999999998876654  46777888877766 8888888  569999999 568


Q ss_pred             eEeeeecCC----------CCHHHHHHHHHhhhCC
Q psy14086        164 KKLDKFQGS----------RTLETLVNYVSKMKGP  188 (324)
Q Consensus       164 ~~~~~~~g~----------~~~~~i~~fi~~~~~~  188 (324)
                      +...++.|.          .+.++|.++|++.+..
T Consensus       115 ~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~  149 (164)
T 1sen_A          115 KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQER  149 (164)
T ss_dssp             CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHh
Confidence            777777774          7899999999988753

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.43  E-value=6.8e-13  Score=102.92  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=73.6

Q ss_pred             EcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCC---ccccceEEE
Q psy14086         85 ELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFD---IKSYPTLLW  159 (324)
Q Consensus        85 ~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~---i~~~P~~~~  159 (324)
                      .++++.+..+.  .+++++|.||++||++|+.+.|.+++++..+.   ++.|+.+|.++++.++.+|+   +.++|++++
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEE
Confidence            35566665544  34567999999999999999999999999875   59999999999999999997   999999999


Q ss_pred             EeCC-eEeeeecCCCCHHHHHHHHHh
Q psy14086        160 IESG-KKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       160 ~~~g-~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      +++| +...++ |... ..+.+.+.+
T Consensus       117 ~~~~G~~~~~~-g~~p-~~~~~~i~~  140 (167)
T 1z6n_A          117 LDEEFNLLGRF-VERP-QAVLDGGPQ  140 (167)
T ss_dssp             ECTTCCEEEEE-ESSC-HHHHHHCHH
T ss_pred             ECCCCCEEEEE-cCCC-HHHHHhHHH
Confidence            9985 655555 5543 334444443

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.43  E-value=1.9e-12  Score=99.18  Aligned_cols=93  Identities=16%  Similarity=0.295  Sum_probs=79.4

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc------------------------chhhhhhCC-
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ------------------------HRSICQSFD-  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~------------------------~~~~~~~~~-  150 (324)
                      ..++++|.||++||++|+...|.++++++++++. ++.|+.|+++.                        ...+++.|+ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG-SVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-TEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            4567899999999999999999999999999542 68899888752                        345778899 


Q ss_pred             -ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        151 -IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       151 -i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                       +.++|++++++. |+...++.|..+.++|.++|++...+.
T Consensus       102 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~  142 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKC  142 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC-
T ss_pred             ccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence             999999999965 888888999999999999999998754

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.43  E-value=1.3e-12  Score=97.93  Aligned_cols=87  Identities=17%  Similarity=0.384  Sum_probs=76.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------chhhhhhCCccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------HRSICQSFDIKS  153 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------~~~~~~~~~i~~  153 (324)
                      .+++++|.||++||++|+...+.+.+++++++   ++.|+.|+++.                      ...+++.|++.+
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~   99 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC
Confidence            45688999999999999999999999999997   58899888876                      578999999999


Q ss_pred             cceEEEEeC-CeEeeeec---CCCCHHHHHHHHHhhh
Q psy14086        154 YPTLLWIES-GKKLDKFQ---GSRTLETLVNYVSKMK  186 (324)
Q Consensus       154 ~P~~~~~~~-g~~~~~~~---g~~~~~~i~~fi~~~~  186 (324)
                      +|++++++. |+.. ++.   |..+.++|.++|++.+
T Consensus       100 ~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          100 QPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            999999964 7666 888   9999999999998764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.42  E-value=9.4e-13  Score=98.65  Aligned_cols=88  Identities=22%  Similarity=0.449  Sum_probs=76.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i~  152 (324)
                      .+++++|.||++||++|+...+.+.+++.+++   ++.|+.++++.                       ...+++.|++.
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  100 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCC
Confidence            45678999999999999999999999999987   48888888743                       56789999999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++++++ +|+.. ++.|..+.++|.++|.+.+.
T Consensus       101 ~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          101 QQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             SSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             CCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            999999996 47766 89999999999999998764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.41  E-value=2.1e-12  Score=96.74  Aligned_cols=104  Identities=17%  Similarity=0.314  Sum_probs=81.6

Q ss_pred             CeeEecccccccc-ccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------------------
Q psy14086        210 PVVSLTSENFNDV-IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------------  270 (324)
Q Consensus       210 ~v~~l~~~~~~~~-~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------------  270 (324)
                      .+..++++.+... ..+++++|.||++||++|+...|.+++++.+ +.   ++.++.++++.                  
T Consensus         9 ~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~-~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (136)
T 1zzo_A            9 SAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS-HP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFT   84 (136)
T ss_dssp             EEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSSCHHHHHHHHHHTTCTTSE
T ss_pred             ccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHH-cC---CeEEEEEeCCCCHHHHHHHHHHcCCCceE
Confidence            3555555554322 2457899999999999999999999999965 43   58888888743                  


Q ss_pred             ---ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        271 ---ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       271 ---~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                         .....+.+.|++.++|+++++ ++|+.+ .+.|..+.+.|.++|.+.++
T Consensus        85 ~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           85 QLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             EEECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             EEEcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence               124677889999999999999 477777 88999999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.41  E-value=2.7e-12  Score=118.22  Aligned_cols=136  Identities=17%  Similarity=0.249  Sum_probs=111.0

Q ss_pred             cCCceEEEecCCcccccccCCCCChHHHHHHHHhhhcCCCCCCCCCCCCCCCceEcChhhHHHHh--cCCCEEEEEeCCC
Q psy14086         31 GYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVNEGLVELTEESFEKYV--SLGNHFVKFYAPW  108 (324)
Q Consensus        31 ~~Pti~~f~~~~~~~~~~y~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~--~~~~~~v~f~~~~  108 (324)
                      ..|++.+.+.|. ...++|.|...-+++.+|+...+.-           ...-..++++.++...  .....++.||++|
T Consensus        61 ~~p~~~~~~~~~-~~~i~f~g~p~g~e~~s~~~~l~~~-----------~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~  128 (521)
T 1hyu_A           61 RKPSFLITNPGS-QQGPRFAGSPLGHEFTSLVLALLWT-----------GGHPSKEAQSLLEQIRDIDGDFEFETYYSLS  128 (521)
T ss_dssp             CSSEEEEECTTC-CCSCEEESCCCGGGHHHHHHHHHHH-----------TTCCCCSCHHHHHHHHHCCSCEEEEEEECTT
T ss_pred             CCCEEEEecCCC-cceEEEeccCcchhHHHHHHHHHhh-----------cCCCCCCCHHHHHHHHhcCCCcceEEEECCC
Confidence            469999998665 5679999999999888888865432           0123457778777775  2334589999999


Q ss_pred             CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        109 CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       109 c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      |++|+.+.|.+++++..+.   ++.+..+|.+.+++++++|+|.++|++++  +|+...  .|..+.++|.+|+...
T Consensus       129 C~~C~~~~~~l~~~a~~~~---~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~--~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          129 CHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFG--QGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             CSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEE--ESCCCHHHHHHHHCCS
T ss_pred             CcCcHHHHHHHHHHHhHcC---ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEe--cCCCCHHHHHHHHhhc
Confidence            9999999999999999875   59999999999999999999999999977  777653  4999999999998654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.40  E-value=2.1e-12  Score=96.85  Aligned_cols=102  Identities=17%  Similarity=0.362  Sum_probs=80.3

Q ss_pred             eeEeccccccc-cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------
Q psy14086        211 VVSLTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------  270 (324)
Q Consensus       211 v~~l~~~~~~~-~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------  270 (324)
                      +..++++.+.- ...+++++|.||++||++|+...|.+.+++.+ +.   ++.++.++++.                   
T Consensus         9 l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   84 (136)
T 1lu4_A            9 ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA-NP---AVTFVGIATRADVGAMQSFVSKYNLNFTNL   84 (136)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEE
T ss_pred             eecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHH-CC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEE
Confidence            44455554332 22457899999999999999999999999965 43   58888888765                   


Q ss_pred             -ccchhhhhhcCCCccceEEEE-ecCeeeeeec---CCCCHHHHHHHHHhhc
Q psy14086        271 -ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYN---GSRDLEELYQFILKHK  317 (324)
Q Consensus       271 -~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~---g~~~~~~l~~fi~~~~  317 (324)
                       .....+.+.|++.++|+++++ ++|+.. .+.   |..+.++|.++|++.+
T Consensus        85 ~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           85 NDADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             ECTTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             ECCchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence             114678889999999999999 578777 888   9999999999998765

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.40  E-value=2e-12  Score=97.96  Aligned_cols=86  Identities=17%  Similarity=0.429  Sum_probs=75.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------------------------chhhhhhCC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------------------------HRSICQSFD  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------------------------~~~~~~~~~  150 (324)
                      ..++++|.||++||++|+.+.+.+.+++++++.. ++.|+.++++.                         +..+++.|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD-SVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS-SEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            4567899999999999999999999999999832 68999888854                         568999999


Q ss_pred             ccccceEEEEe-CCeEeeeecCCCCHHHHHHHH
Q psy14086        151 IKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       151 i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      +.++|++++++ +|+...++.|..+.++|.++|
T Consensus       112 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             cCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            99999999995 588778899999999999887

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.40  E-value=3.2e-12  Score=97.79  Aligned_cols=94  Identities=18%  Similarity=0.386  Sum_probs=78.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------cchhhhhhcCCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------LSKDLCNQEGVD  283 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~~i~  283 (324)
                      .+++++|.||++||++|+...|.+.+++.++...  ++.++.++++..                    .+..+.+.|++.
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  102 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  102 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence            4678999999999999999999999999664332  588888887651                    024678899999


Q ss_pred             ccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        284 GFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       284 ~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++|+++++ ++|+.+..+.|..+.+.|.++|++.++.
T Consensus       103 ~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A          103 PLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPG  139 (151)
T ss_dssp             SSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             CCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhh
Confidence            99999999 6888888888999999999999988764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.39  E-value=2.5e-12  Score=98.37  Aligned_cols=93  Identities=24%  Similarity=0.518  Sum_probs=79.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------chhhhhhCCccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------HRSICQSFDIKS  153 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------~~~~~~~~~i~~  153 (324)
                      ..++++|.||++||++|+...+.+.+++++++.. ++.|+.|+++.                      +..+++.|+|.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            4567899999999999999999999999999752 48888888764                      357899999999


Q ss_pred             cceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        154 YPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       154 ~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +|++++++ +|+...++.|..+.++|.++|+..+.+.
T Consensus       104 ~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A          104 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred             CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence            99999995 5888788899999999999999998754

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.39  E-value=8.4e-14  Score=108.26  Aligned_cols=89  Identities=17%  Similarity=0.254  Sum_probs=70.1

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh-hhhhcCC--CccceEEEE-ecCeeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD-LCNQEGV--DGFPSIYVY-KNGVRTAEY  300 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~i--~~~P~l~~~-~~g~~~~~~  300 (324)
                      +++++|.||++||++|+.+.|.|.+++.. ...  ++.|+.+|++.  +++ ++..+++  .++|++++| ++|+.+..+
T Consensus        46 ~k~vlv~F~a~WC~~C~~~~p~l~~~~~~-~~~--~~~~~~v~~d~--~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~  120 (164)
T 1sen_A           46 GLPLMVIIHKSWCGACKALKPKFAESTEI-SEL--SHNFVMVNLED--EEEPKDEDFSPDGGYIPRILFLDPSGKVHPEI  120 (164)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHTCHHH-HHH--HTTSEEEEEEG--GGSCSCGGGCTTCSCSSEEEEECTTSCBCTTC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHH-hhc--CCeEEEEEecC--CchHHHHHhcccCCcCCeEEEECCCCCEEEEE
Confidence            56899999999999999999999997743 332  35566677666  444 6778888  669999999 688887777


Q ss_pred             cCC----------CCHHHHHHHHHhhcc
Q psy14086        301 NGS----------RDLEELYQFILKHKV  318 (324)
Q Consensus       301 ~g~----------~~~~~l~~fi~~~~~  318 (324)
                      .|.          .+.+.|.++|++.+.
T Consensus       121 ~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          121 INENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             CCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             eCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            774          688999999988765

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.39  E-value=2e-12  Score=99.00  Aligned_cols=94  Identities=15%  Similarity=0.265  Sum_probs=77.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC----------------------ccchhhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ----------------------ELSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~----------------------~~~~~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.+++.++..  .++.++.++++.                      .....+.+.|+
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK--GSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYG  100 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc--CCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhC
Confidence            467899999999999999999999999966422  368999998863                      11345677888


Q ss_pred             --CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        282 --VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       282 --i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                        +.++|+++++ ++|+.+..+.|..+.+.|.++|++....
T Consensus       101 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A          101 NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             CCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             CccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence              9999999988 5788888899999999999999987654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.39  E-value=2.2e-12  Score=97.75  Aligned_cols=88  Identities=16%  Similarity=0.403  Sum_probs=74.4

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------ccchhhhhhc
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------ELSKDLCNQE  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------~~~~~~~~~~  280 (324)
                      .+++++|.||++||++|+...|.+.+++.+ +.. .++.++.++++.                       .....+.+.|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~-~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  110 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDA-HPS-DSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEY  110 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHH-CCC-SSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHH-cCC-CCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhc
Confidence            567899999999999999999999999966 432 268888888753                       1245788999


Q ss_pred             CCCccceEEEE-ecCeeeeeecCCCCHHHHHHHH
Q psy14086        281 GVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       281 ~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      ++.++|+++++ ++|+.+..+.|..+.+.|.++|
T Consensus       111 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          111 HIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             TCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            99999999999 6888888899999999999887

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.39  E-value=2.5e-12  Score=99.89  Aligned_cols=93  Identities=20%  Similarity=0.375  Sum_probs=79.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC--------------------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF--------------------------  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~--------------------------  149 (324)
                      ..++++|.||++||++|+...+.+.++++++++. ++.|+.|+++.....++.|                          
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR-GFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYID  111 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-TEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTST
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhc
Confidence            4567899999999999999999999999999863 4999999988766666665                          


Q ss_pred             -CccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        150 -DIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       150 -~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                       ++.++|++++++ +|+...++.|..+.+++.++|++.+...
T Consensus       112 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A          112 GGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             TCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred             cCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence             899999999995 4777788899999999999999998744

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.38  E-value=1.8e-12  Score=87.06  Aligned_cols=74  Identities=20%  Similarity=0.357  Sum_probs=62.0

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC-CH
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR-DL  306 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~-~~  306 (324)
                      ..|.||++||++|+.+.|.+++++.+ +..  ++.++.+|     +.+++++|+|.++|++++  +|+.+..  |.. +.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~-~~~--~~~~~~v~-----~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~   69 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKE-LGI--DAEFEKIK-----EMDQILEAGLTALPGLAV--DGELKIM--GRVASK   69 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHH-TTC--CEEEEEEC-----SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHH-cCC--ceEEEEec-----CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCH
Confidence            35899999999999999999999955 443  68888888     377889999999999988  7776533  887 89


Q ss_pred             HHHHHHH
Q psy14086        307 EELYQFI  313 (324)
Q Consensus       307 ~~l~~fi  313 (324)
                      ++|.+||
T Consensus        70 ~~l~~~l   76 (77)
T 1ilo_A           70 EEIKKIL   76 (77)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998876

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.38  E-value=8.9e-13  Score=93.48  Aligned_cols=77  Identities=9%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCH
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL  306 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~  306 (324)
                      ..++.|+++||++|+.+.+.+++++.++     ++.|..+|++.  ++++..+|+++ +|++++|.+|+.+  ..|..+.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~-----~i~~~~vDId~--d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~   99 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS-----WFELEVINIDG--NEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDS   99 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS-----CCCCEEEETTT--CHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc-----CCeEEEEECCC--CHHHHHHhCCC-CceEEEEECCEEE--EecCCCH
Confidence            4789999999999999999999998552     37889999998  89999999997 9999999999875  4588899


Q ss_pred             HHHHHHH
Q psy14086        307 EELYQFI  313 (324)
Q Consensus       307 ~~l~~fi  313 (324)
                      +.|.+||
T Consensus       100 ~~L~~~L  106 (107)
T 2fgx_A          100 DVIGAYL  106 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.37  E-value=8.7e-13  Score=90.36  Aligned_cols=75  Identities=12%  Similarity=0.092  Sum_probs=64.2

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEE  308 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~  308 (324)
                      ++.|+++||++|+.+.|.+++++.++        +..+|++.  ++++.++|+++ +|++++ .+|+.+.   |..+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~--~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~   67 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDD--DAALESAYGLR-VPVLRD-PMGRELD---WPFDAPR   67 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTT--CHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCC--CHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHH
Confidence            78999999999999999999887321        67899998  89999999998 999988 8887763   8889999


Q ss_pred             HHHHHHhhcc
Q psy14086        309 LYQFILKHKV  318 (324)
Q Consensus       309 l~~fi~~~~~  318 (324)
                      |.++|.+.+.
T Consensus        68 L~~~l~~~~~   77 (87)
T 1ttz_A           68 LRAWLDAAPH   77 (87)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHHH
Confidence            9999987764

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.37  E-value=4.1e-12  Score=98.59  Aligned_cols=108  Identities=16%  Similarity=0.236  Sum_probs=82.7

Q ss_pred             CeeEeccccccccc-cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------------------
Q psy14086        210 PVVSLTSENFNDVI-KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------------  270 (324)
Q Consensus       210 ~v~~l~~~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------------  270 (324)
                      .+..++++.+.... .+++++|.||++||++|+...|.+.+++.++...  ++.++.++.+.                  
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS--SANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CcEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            56666776654332 4568999999999999999999999999664333  35555554320                  


Q ss_pred             --------ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        271 --------ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       271 --------~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                              ..+..+++.|++.++|+++++ ++|+.+..+.|..+.+.|.++|++.+.+
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~  157 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNAD  157 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence                    114578889999999999999 6888888889999999999999987753

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.37  E-value=5.6e-12  Score=96.48  Aligned_cols=108  Identities=15%  Similarity=0.320  Sum_probs=82.9

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------------
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------------  272 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------------  272 (324)
                      .+..++++.+. .-..+++++|.||++||++|+...|.+.++..++ .. .++.++.++++...                
T Consensus        14 ~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~-~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~   91 (152)
T 2lja_A           14 SYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKY-AG-KDIHFVSLSCDKNKKAWENMVTKDQLKGIQ   91 (152)
T ss_dssp             EEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHS-TT-SSEEEEEEECCSCHHHHHHHHHHHTCCSEE
T ss_pred             EeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHh-cc-CCeEEEEEEccCcHHHHHHHHHhcCCCCce
Confidence            34444454432 1124578999999999999999999999998653 32 25889999887621                


Q ss_pred             -----chhhhhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        273 -----SKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       273 -----~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                           ...+.+.|++.++|+++++. +|+.+..+.|..+.+.|.++|++.++.
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~  144 (152)
T 2lja_A           92 LHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL  144 (152)
T ss_dssp             EECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTC
T ss_pred             eecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcc
Confidence                 12678899999999999996 788877788888999999999987653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.36  E-value=1.2e-12  Score=89.61  Aligned_cols=76  Identities=11%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      ++.|+++||++|+.+.+.+++++..+       +..+|+++++.++++||++ +|++++ .+|+.+.   |.++.+.|.+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~   70 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRA   70 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHH
Confidence            68899999999999999999876442       6789999999999999998 999988 7777653   8899999999


Q ss_pred             HHHhhhCC
Q psy14086        181 YVSKMKGP  188 (324)
Q Consensus       181 fi~~~~~~  188 (324)
                      +|.+.+..
T Consensus        71 ~l~~~~~~   78 (87)
T 1ttz_A           71 WLDAAPHA   78 (87)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHHH
Confidence            99877653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.36  E-value=1.7e-11  Score=101.52  Aligned_cols=157  Identities=15%  Similarity=0.280  Sum_probs=102.8

Q ss_pred             HHHHhcCCCEEEEEe-CCCCHhHh-hHHHHHHHHHHhcCCCCCe-EEEEecccc----------------------chhh
Q psy14086         91 FEKYVSLGNHFVKFY-APWCGHCQ-SLAPVWQELASHFKTEEDV-SIAKIDCTQ----------------------HRSI  145 (324)
Q Consensus        91 f~~~~~~~~~~v~f~-~~~c~~c~-~~~~~~~~la~~~~~~~~i-~~~~vd~~~----------------------~~~~  145 (324)
                      +.+....+++++.|| ++||++|. ...|.|++++.+++.. ++ .++.|..+.                      +..+
T Consensus        27 l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~  105 (241)
T 1nm3_A           27 TSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEF  105 (241)
T ss_dssp             HHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHH
T ss_pred             HHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHH
Confidence            444234567788898 99999999 9999999999998642 46 666665432                      1346


Q ss_pred             hhhCCcc-----------ccceEEEEeCCeEeeeecCC---------CCHHHHHHHHHhhhCCCCCCCCCCccccCCCCC
Q psy14086        146 CQSFDIK-----------SYPTLLWIESGKKLDKFQGS---------RTLETLVNYVSKMKGPLNKKADSPDAENASEVP  205 (324)
Q Consensus       146 ~~~~~i~-----------~~P~~~~~~~g~~~~~~~g~---------~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~  205 (324)
                      ++.||+.           ..|+.+++++|.....+.|.         .+.+++.+.+....                   
T Consensus       106 ~~~~gv~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~-------------------  166 (241)
T 1nm3_A          106 TEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH-------------------  166 (241)
T ss_dssp             HHHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS-------------------
T ss_pred             HHHhCceeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc-------------------
Confidence            6677765           34766666778766666654         24555555442210                   


Q ss_pred             CCCCCeeEeccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-hhhhhhcCCCc
Q psy14086        206 VKPEPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-KDLCNQEGVDG  284 (324)
Q Consensus       206 ~~~~~v~~l~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~i~~  284 (324)
                                       + ....++.|..+||+.|+.....+++..         +.+-.+|++.... .++.+.++..+
T Consensus       167 -----------------i-~~~~i~ly~~~~Cp~C~~a~~~L~~~~---------i~~~~~~i~~~~~~~~l~~~~g~~~  219 (241)
T 1nm3_A          167 -----------------Q-VQESISIFTKPGCPFCAKAKQLLHDKG---------LSFEEIILGHDATIVSVRAVSGRTT  219 (241)
T ss_dssp             -----------------C-CCCCEEEEECSSCHHHHHHHHHHHHHT---------CCCEEEETTTTCCHHHHHHHTCCSS
T ss_pred             -----------------c-ccceEEEEECCCChHHHHHHHHHHHcC---------CceEEEECCCchHHHHHHHHhCCCC
Confidence                             0 122466788899999999988887642         3445566655212 45677789899


Q ss_pred             cceEEEEecCee
Q psy14086        285 FPSIYVYKNGVR  296 (324)
Q Consensus       285 ~P~l~~~~~g~~  296 (324)
                      +|.++  .+|+.
T Consensus       220 vP~~~--~~g~~  229 (241)
T 1nm3_A          220 VPQVF--IGGKH  229 (241)
T ss_dssp             SCEEE--ETTEE
T ss_pred             cCEEE--ECCEE
Confidence            99984  46643

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.36  E-value=7.8e-12  Score=95.80  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=81.9

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------  270 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------  270 (324)
                      +..++++.+. ....+++++|.||++||++|+...|.+.+++.++...  ++.++.++.+.                   
T Consensus        13 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~   90 (153)
T 2l5o_A           13 LPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIESVRQYVKDYGLPFTV   90 (153)
T ss_dssp             EECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT--TEEEEEEECTTSCHHHHHHHHHHTTCCSEE
T ss_pred             eecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CeEEEEEecCCCCHHHHHHHHHHcCCCceE
Confidence            4444444432 1124678999999999999999999999999664433  57777665321                   


Q ss_pred             --ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        271 --ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       271 --~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                        .....+.+.|++.++|+++++ ++|+.+..+.|..+.+.|.++|++.+...
T Consensus        91 ~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~  143 (153)
T 2l5o_A           91 MYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNS  143 (153)
T ss_dssp             EECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred             EcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence              114678899999999999999 67888778999999999999999887643

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.36  E-value=1.7e-12  Score=92.01  Aligned_cols=77  Identities=13%  Similarity=0.245  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL  178 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i  178 (324)
                      ..++.|+++||++|+.+.+.+++++.++    .+.|..+|+++++.++++||++ +|+++++.+|+.+  ..|.++.+.|
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~----~i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L  102 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS----WFELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVI  102 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS----CCCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHH
Confidence            4589999999999999999999999886    3888999999999999999997 9999999888765  4688999999


Q ss_pred             HHHH
Q psy14086        179 VNYV  182 (324)
Q Consensus       179 ~~fi  182 (324)
                      .+||
T Consensus       103 ~~~L  106 (107)
T 2fgx_A          103 GAYL  106 (107)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9987

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.36  E-value=3.8e-12  Score=97.46  Aligned_cols=93  Identities=16%  Similarity=0.459  Sum_probs=80.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-----------------------hhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-----------------------SICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-----------------------~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+...+.+.++++++.+. ++.|+.|+++...                       .+++.|++.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS-SEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC-CeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            3557899999999999999999999999999752 5889998887653                       788999999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ++|++++++ +|+...++.|..+.++|.++|++.....
T Consensus       108 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             SSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence            999999998 5887777889899999999999998754

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.36  E-value=9e-13  Score=102.34  Aligned_cols=105  Identities=18%  Similarity=0.316  Sum_probs=82.2

Q ss_pred             CceEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec----------------------
Q psy14086         82 GLVELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID----------------------  138 (324)
Q Consensus        82 ~~~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd----------------------  138 (324)
                      .+..++.+.+.... ..++++|.||++||++|+.+.|.|.+++++++.. .+.|+.|+                      
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            45555555554332 4457899999999999999999999999997542 35554443                      


Q ss_pred             ------cccchhhhhhCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        139 ------CTQHRSICQSFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       139 ------~~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                            ++.+..+++.|+|.++|++++++ +|+...++.|..+.++|.++|++.+.
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  33456789999999999999995 58888888999999999999998876

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.35  E-value=1.1e-11  Score=95.76  Aligned_cols=92  Identities=12%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             cCCCEEEEEeCCCCHhHhh-HHHHHHHHHHhcCCCCCeEEEEecc----------------------------ccchh--
Q psy14086         96 SLGNHFVKFYAPWCGHCQS-LAPVWQELASHFKTEEDVSIAKIDC----------------------------TQHRS--  144 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~-~~~~~~~la~~~~~~~~i~~~~vd~----------------------------~~~~~--  144 (324)
                      ..++++|.||++||++|+. +.|.+.+++++++++ ++.|+.|++                            +....  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            4567899999999999999 599999999999863 588888875                            22233  


Q ss_pred             ----hhhhCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        145 ----ICQSFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       145 ----~~~~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                          +++.|++.++|++++++ +|+...++.|..+.+.|.++|++.+..
T Consensus       108 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          108 RIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                88999999999999997 488888889999999999999999873

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.35  E-value=7.8e-12  Score=95.92  Aligned_cols=88  Identities=20%  Similarity=0.381  Sum_probs=77.7

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------ccchhhhhhCC
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------------TQHRSICQSFD  150 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------------~~~~~~~~~~~  150 (324)
                      ++++|.||++||++|+...+.+.++++++ +   +.|+.|++                           +....+++.|+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~---v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-G---VPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-C---CCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-C---CeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            78899999999999999999999999999 3   77777777                           36678999999


Q ss_pred             ccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        151 IKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       151 i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +.++|++++++ +|+...++.|..+.++|.++|++...+.
T Consensus       107 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             BCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             CCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            99999999885 5887888999999999999999998754

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.35  E-value=4.9e-12  Score=96.22  Aligned_cols=104  Identities=19%  Similarity=0.268  Sum_probs=79.7

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh--------------
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD--------------  275 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~--------------  275 (324)
                      +..++++.+. .-..+++++|.||++||++|+...|.+.++..++...  ++.++.++++.  ..+              
T Consensus        16 l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~--~~~~~~~~~~~~~~~~~   91 (148)
T 3hcz_A           16 MTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIER--KDEEWLKFIRSKKIGGW   91 (148)
T ss_dssp             CBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEECCS--SSHHHHHHHHHHTCTTS
T ss_pred             EecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEecC--CHHHHHHHHHHcCCCCc
Confidence            4444444432 1124578999999999999999999999999664333  58999999886  444              


Q ss_pred             -----------hhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        276 -----------LCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       276 -----------~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                 +.+.|++.++|+++++ ++|+.+..+.|..+.+++.+.+.+.++
T Consensus        92 ~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A           92 LNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLK  146 (148)
T ss_dssp             EEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred             eEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHhc
Confidence                       8899999999999999 688887788887777777777766543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.34  E-value=1.2e-11  Score=95.49  Aligned_cols=94  Identities=16%  Similarity=0.248  Sum_probs=76.6

Q ss_pred             cCCcEEEEEeCCCChhhhh-hhHhHHHHHHHhhcCCCCeEEEEEecCC--------------------------ccchh-
Q psy14086        224 KSGTVFIKFFAPWCGHCKR-LAPTWEELGTKLLDNKHGIVIAKVDCTQ--------------------------ELSKD-  275 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~-~~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------------~~~~~-  275 (324)
                      .+++++|.||++||++|+. +.|.+.++..+ +.. .++.++.++++.                          ..... 
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~-~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  106 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRM-IDE-SQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREG  106 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHH-SCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTT
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHH-hCc-CCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCcccc
Confidence            4678999999999999999 59999999966 433 258888887520                          01223 


Q ss_pred             -----hhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        276 -----LCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       276 -----~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                           +.+.|++.++|+++++ ++|+.+..+.|..+.+.+.++|.+.+++
T Consensus       107 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          107 QRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             CSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             chhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                 7889999999999999 4788888889999999999999998864

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.34  E-value=1e-11  Score=95.64  Aligned_cols=92  Identities=16%  Similarity=0.286  Sum_probs=78.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhH-HHHHHHHHHhcCCCCCeEEEEeccc----------------------------cch---
Q psy14086         96 SLGNHFVKFYAPWCGHCQSL-APVWQELASHFKTEEDVSIAKIDCT----------------------------QHR---  143 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~~---  143 (324)
                      ..++++|.||++||++|+.. .|.+.++++++++. ++.|+.|+++                            ...   
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED-KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC-CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            35678999999999999996 99999999999853 6888888752                            112   


Q ss_pred             --hhhhhCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        144 --SICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       144 --~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                        .+++.|++.++|++++++. |+...++.|..+.+.|.++|++.+..
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence              5889999999999999964 77778889999999999999999874

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.34  E-value=9.1e-12  Score=93.27  Aligned_cols=88  Identities=20%  Similarity=0.479  Sum_probs=75.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc----------------------------ccchhhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC----------------------------TQHRSICQ  147 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~----------------------------~~~~~~~~  147 (324)
                      .+++++|.||++||++|+...+.+.++++++..  ++.++.+++                            +....+++
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            456789999999999999999999999999765  788888842                            23457899


Q ss_pred             hCCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        148 SFDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       148 ~~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      .|++.++|++++++ +|+...++.|..+.+++.++|++.
T Consensus        99 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           99 TYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99999999999995 588888899999999999999764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.33  E-value=8.7e-12  Score=95.66  Aligned_cols=90  Identities=21%  Similarity=0.386  Sum_probs=76.2

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC--C-----------------------ccchhhhhhc
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT--Q-----------------------ELSKDLCNQE  280 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~--~-----------------------~~~~~~~~~~  280 (324)
                      ++++|.||++||++|+...|.+.+++.++     ++.++.++++  .                       .....+.+.|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  105 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARF  105 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHh
Confidence            78999999999999999999999999764     4677777771  0                       0157788999


Q ss_pred             CCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        281 GVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       281 ~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      ++.++|+++++ ++|+.+..+.|..+.++|.++|++.++..
T Consensus       106 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          106 KVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             SBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             CCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            99999998888 68888888999999999999999987654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.32  E-value=1.8e-11  Score=91.61  Aligned_cols=90  Identities=23%  Similarity=0.426  Sum_probs=73.9

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--------------------------ccchhhh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--------------------------ELSKDLC  277 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~  277 (324)
                      .+++++|.||++||++|+...+.+.+++.+ +..  ++.++.++...                          .....+.
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   97 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKE-AGD--DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLL   97 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHT-CTT--TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHH-hCC--CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHH
Confidence            467899999999999999999999999965 443  68888884321                          1134678


Q ss_pred             hhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        278 NQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       278 ~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      +.|++.++|+++++ ++|+.+..+.|..+.+++.++|++.
T Consensus        98 ~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           98 ETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            89999999999999 6888888899999999999998763

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.32  E-value=1.5e-11  Score=94.80  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=77.0

Q ss_pred             cCCcEEEEEeCCCChhhhhh-hHhHHHHHHHhhcCCCCeEEEEEecCC--------------------------ccch--
Q psy14086        224 KSGTVFIKFFAPWCGHCKRL-APTWEELGTKLLDNKHGIVIAKVDCTQ--------------------------ELSK--  274 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~-~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------------~~~~--  274 (324)
                      .+++++|.||++||++|+.. .|.+.++..+ +.. .++.++.++++.                          ....  
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~-~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  104 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAA-FPE-DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDG  104 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHH-SCT-TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHH-hCc-CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccch
Confidence            46789999999999999995 9999999966 432 268888887531                          0011  


Q ss_pred             ---hhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        275 ---DLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       275 ---~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                         .+.+.|++.++|+++++ ++|+.+..+.|..+.+.|.++|.+.+.+.
T Consensus       105 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  154 (158)
T 3eyt_A          105 AMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA  154 (158)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             hhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence               47889999999999999 58888888899999999999999988754

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.31  E-value=7.5e-12  Score=95.15  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHH---HhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe-CCeEeeeecC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELA---SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE-SGKKLDKFQG  171 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la---~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~~~~~~~g  171 (324)
                      .+++++|.||++||++|+.+.|.+.+..   .....  .+..+.+| .+...++..+++.++|++++++ +|+.+.+..|
T Consensus        43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~--~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G  119 (151)
T 3ph9_A           43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN--KFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSLTVRADIAG  119 (151)
T ss_dssp             HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH--TCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCC
T ss_pred             cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc--CeEEEEec-CCchhhHhhcCCCCCCEEEEECCCCCEEEEEeC
Confidence            5678999999999999999999888643   22221  34455554 2345678899999999999998 6888777778


Q ss_pred             C----------CCHHHHHHHHHhhhC
Q psy14086        172 S----------RTLETLVNYVSKMKG  187 (324)
Q Consensus       172 ~----------~~~~~i~~fi~~~~~  187 (324)
                      .          .+.+.+.+.+++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A          120 RYSNRLYTYEPRDLPLLIENMKKALR  145 (151)
T ss_dssp             SCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred             CcCCcccccchhhHHHHHHHHHHHHH
Confidence            7          345667777766655

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.31  E-value=1.5e-11  Score=93.56  Aligned_cols=105  Identities=12%  Similarity=0.206  Sum_probs=78.1

Q ss_pred             CeeEeccccccc---cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc--------------
Q psy14086        210 PVVSLTSENFND---VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL--------------  272 (324)
Q Consensus       210 ~v~~l~~~~~~~---~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~--------------  272 (324)
                      .+..++++.+.-   -..+++++|.||++||++|+...|.+.+++.+ +....++.++.++++...              
T Consensus        15 ~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~-~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~   93 (148)
T 3fkf_A           15 SLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKE-YKKNKNFAMLGISLDIDREAWETAIKKDTLSW   93 (148)
T ss_dssp             CEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHH-TTTCTTEEEEEEECCSCHHHHHHHHHHTTCCS
T ss_pred             EeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHH-hcCCCCeEEEEEECCCCHHHHHHHHHHcCCCc
Confidence            344455544321   22467899999999999999999999999966 412235889999887622              


Q ss_pred             ---------chhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        273 ---------SKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       273 ---------~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                               ...+++.|++.++|+++++ ++|+.+..+.   +.+.+.++|.+.++
T Consensus        94 ~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A           94 DQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             EEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             eEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence                     3477899999999999999 5777654443   78999999988764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.31  E-value=5.6e-12  Score=97.84  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=67.5

Q ss_pred             eEcChhhHHHHh-cCCCEEEEEeCCCCHhHhhHHHH-H--HHHHHhcCCCCCeEEEEeccccchhhhhhC--------Cc
Q psy14086         84 VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPV-W--QELASHFKTEEDVSIAKIDCTQHRSICQSF--------DI  151 (324)
Q Consensus        84 ~~l~~~~f~~~~-~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~i~~~~vd~~~~~~~~~~~--------~i  151 (324)
                      ....++.|.... .+++++|.||++||++|+.+.+. |  .++++.+..  .+.+++||.++.+++.+.|        |+
T Consensus        25 ~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~~~q~~~gv  102 (173)
T 3ira_A           25 YPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMTVCQIILGR  102 (173)
T ss_dssp             BCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHHHHHHHcCC
Confidence            455678887766 56789999999999999999983 3  567777765  6999999999999999888        99


Q ss_pred             cccceEEEEeC-CeEee
Q psy14086        152 KSYPTLLWIES-GKKLD  167 (324)
Q Consensus       152 ~~~P~~~~~~~-g~~~~  167 (324)
                      .++|+++++++ |+.+.
T Consensus       103 ~g~Pt~v~l~~dG~~v~  119 (173)
T 3ira_A          103 GGWPLNIIMTPGKKPFF  119 (173)
T ss_dssp             CCSSEEEEECTTSCEEE
T ss_pred             CCCcceeeECCCCCcee
Confidence            99999999974 76553

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.30  E-value=5.1e-12  Score=97.96  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=64.3

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC---CCccceEEEEecC-eeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG---VDGFPSIYVYKNG-VRTAEY  300 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---i~~~P~l~~~~~g-~~~~~~  300 (324)
                      +++++|.||++||++|+...|.+++++.+ +.   ++.|..+|.+.  ++++...|.   +.++||+++|++| +.+..+
T Consensus        54 ~k~vvv~F~A~WC~pC~~~~P~l~~l~~~-~~---~v~~~~v~~d~--~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~  127 (167)
T 1z6n_A           54 RRYRLLVAGEMWCPDCQINLAALDFAQRL-QP---NIELAIISKGR--AEDDLRQRLALERIAIPLVLVLDEEFNLLGRF  127 (167)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHHHH-CT---TEEEEEECHHH--HHHHTTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHH-CC---CcEEEEEECCC--CHHHHHHHHHcCCCCcCeEEEECCCCCEEEEE
Confidence            46799999999999999999999999954 32   58999999888  788888887   9999999999875 655555


Q ss_pred             cCCCCHHHHHHHHH
Q psy14086        301 NGSRDLEELYQFIL  314 (324)
Q Consensus       301 ~g~~~~~~l~~fi~  314 (324)
                       |... ..+.+.+.
T Consensus       128 -g~~p-~~~~~~i~  139 (167)
T 1z6n_A          128 -VERP-QAVLDGGP  139 (167)
T ss_dssp             -ESSC-HHHHHHCH
T ss_pred             -cCCC-HHHHHhHH
Confidence             5433 34444443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.30  E-value=1.9e-11  Score=93.55  Aligned_cols=90  Identities=20%  Similarity=0.345  Sum_probs=75.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------------------------chhhhhhCC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------------------------HRSICQSFD  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------------------------~~~~~~~~~  150 (324)
                      ..++++|.||++||++|+...+.+.++++++.+. .+.|+.|+++.                         ...+++.|+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK-GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT-TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            3567899999999999999999999999999863 58899888876                         578999999


Q ss_pred             ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        151 IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       151 i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      |.++|++++++. |+...++   .+.+++.++|++++...
T Consensus       107 v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             CCSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSS
T ss_pred             CCcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhc
Confidence            999999999954 7666554   35578999999888754

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.29  E-value=1.2e-11  Score=94.63  Aligned_cols=93  Identities=19%  Similarity=0.368  Sum_probs=78.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-----------------------ccchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-----------------------TQHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+...+.+.++++++++. ++.++.|+.                       +....+++.|++.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            4567899999999999999999999999999763 477776552                       3456799999999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ++|++++++ +|+...++.|..+.+.|.++|++.+...
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~  143 (153)
T 2l5o_A          106 VYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNS  143 (153)
T ss_dssp             SSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred             ccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence            999999995 4777778999999999999999998754

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.29  E-value=1.5e-11  Score=95.89  Aligned_cols=104  Identities=18%  Similarity=0.313  Sum_probs=77.1

Q ss_pred             CeeEe--ccccccc--cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------
Q psy14086        210 PVVSL--TSENFND--VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------  270 (324)
Q Consensus       210 ~v~~l--~~~~~~~--~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------  270 (324)
                      .+..+  +++.+..  ...+++++|.||++||++|+...|.+++++.+      ++.++.++.+.               
T Consensus        32 ~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~v~~~~~~~~~~~~~~~~~~~  105 (168)
T 2b1k_A           32 RLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNP  105 (168)
T ss_dssp             EEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHHHHHHHCCC
T ss_pred             EeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC------CCEEEEEECCCChHHHHHHHHHcCCC
Confidence            45555  4444432  23567899999999999999999999999843      35566666321               


Q ss_pred             ------ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        271 ------ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       271 ------~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                            ..+..+...|++.++|+++++ ++|+.+..+.|..+.+.+.++|.+.+..
T Consensus       106 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  161 (168)
T 2b1k_A          106 YALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEK  161 (168)
T ss_dssp             CSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred             CceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence                  114577888999999966655 6888887889999999999998877653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.28  E-value=5.4e-11  Score=90.93  Aligned_cols=92  Identities=27%  Similarity=0.497  Sum_probs=75.1

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch----------------------hhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK----------------------DLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~----------------------~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.+++.++...  ++.++.++++.  ..                      .+.+.|+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  102 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK--GFQVVAVNLDA--KTGDAMKFLAQVPAEFTVAFDPKGQTPRLYG  102 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG--TEEEEEEECCS--SHHHHHHHHHHSCCCSEEEECTTCHHHHHTT
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEECCC--CHHHHHHHHHHcCCCCceeECCcchhHHHcC
Confidence            4578999999999999999999999999764433  48888888875  33                      6778899


Q ss_pred             CCccceEEEE-ecCeeeeeecCCC--CHHHHHHHHHhhccc
Q psy14086        282 VDGFPSIYVY-KNGVRTAEYNGSR--DLEELYQFILKHKVE  319 (324)
Q Consensus       282 i~~~P~l~~~-~~g~~~~~~~g~~--~~~~l~~fi~~~~~~  319 (324)
                      +.++|+++++ ++|+.+..+.|..  +.+.|.++|.+.+..
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A          103 VKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGG  143 (152)
T ss_dssp             CCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred             CCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence            9999999888 6888877788853  568999999987653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.28  E-value=2.6e-11  Score=92.68  Aligned_cols=93  Identities=20%  Similarity=0.436  Sum_probs=76.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----------------------hhhhhCCccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----------------------SICQSFDIKS  153 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----------------------~~~~~~~i~~  153 (324)
                      ..++++|.||++||++|+...+.+.+++++++.. .+.++.++++...                      .+++.|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            3557899999999999999999999999999863 3888888877544                      6788899999


Q ss_pred             cceEEEEe-CCeEeeeecCC--CCHHHHHHHHHhhhCCC
Q psy14086        154 YPTLLWIE-SGKKLDKFQGS--RTLETLVNYVSKMKGPL  189 (324)
Q Consensus       154 ~P~~~~~~-~g~~~~~~~g~--~~~~~i~~fi~~~~~~~  189 (324)
                      +|++++++ +|+...++.|.  .+.+.|.++|++.+.+.
T Consensus       106 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             SSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             CCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence            99999995 47777778885  45689999999998754

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.28  E-value=1.6e-11  Score=93.37  Aligned_cols=88  Identities=17%  Similarity=0.323  Sum_probs=72.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhc-CCCCCeEEEEecccc-------------------------chhhhhhC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHF-KTEEDVSIAKIDCTQ-------------------------HRSICQSF  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~-~~~~~i~~~~vd~~~-------------------------~~~~~~~~  149 (324)
                      ..++++|.||++||++|+...+.+.++++++ .+ ..+.|+.|+++.                         ...+++.|
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC-TTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            4567899999999999999999999999999 54 258888887765                         45889999


Q ss_pred             CccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        150 DIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       150 ~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++.++|++++++. |+...++.   +.+++.++|++.+.
T Consensus       111 ~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          111 AILTLPTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             TCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            9999999999954 66554443   88999999998865

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.27  E-value=8.2e-12  Score=95.00  Aligned_cols=90  Identities=17%  Similarity=0.295  Sum_probs=75.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh-------------------------hhhhCC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-------------------------ICQSFD  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~-------------------------~~~~~~  150 (324)
                      ..++++|.||++||++|+...+.+.+++++++.. .+.|+.|+++....                         +++.|+
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            4557899999999999999999999999999863 49999999886655                         899999


Q ss_pred             ccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        151 IKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       151 i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +.++|++++++ +|+...++.|..+.+.+.+.+.+.+
T Consensus       109 i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            99999999995 5777778888877777777776554

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.26  E-value=4.9e-11  Score=91.25  Aligned_cols=91  Identities=23%  Similarity=0.344  Sum_probs=71.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-----------------------chhhhhhc
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-----------------------SKDLCNQE  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-----------------------~~~~~~~~  280 (324)
                      .+++++|.||++||++|+...|.+.++..++...  ++.++.++++...                       +..+.+.|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  105 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESY  105 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT--TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHh
Confidence            4678999999999999999999999999664332  5888888887511                       35678899


Q ss_pred             CCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        281 GVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       281 ~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++.++|+++++ ++|+.+..+.   +.+++.++|++.++.
T Consensus       106 ~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~~~  142 (152)
T 2lrn_A          106 CIVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKFVNG  142 (152)
T ss_dssp             TCCSSCEEEEECTTSEEEEECC---CTTHHHHHHHHHHTS
T ss_pred             CCCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHHHhh
Confidence            99999999999 6787765543   456788888877654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.26  E-value=6.4e-11  Score=90.74  Aligned_cols=107  Identities=21%  Similarity=0.416  Sum_probs=78.0

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc------------------
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE------------------  271 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~------------------  271 (324)
                      +..++++.+. ....+++++|.||++||++|+...|.+.+++.++...  ++.++.++.+..                  
T Consensus        13 l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~   90 (154)
T 3kcm_A           13 LNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK--PFRMLCVSIDEGGKVAVEEFFRKTGFTLPV   90 (154)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTHHHHHHHHHHHHCCCCCE
T ss_pred             EEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEEcCCcchHHHHHHHHHcCCCeeE
Confidence            4444444432 1124678999999999999999999999999664332  688888887761                  


Q ss_pred             ---cchhhhhhcCCCccceEEEE-ecCeeeeeecCCC--CHHHHHHHHHhhccc
Q psy14086        272 ---LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSR--DLEELYQFILKHKVE  319 (324)
Q Consensus       272 ---~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~--~~~~l~~fi~~~~~~  319 (324)
                         ....+.+.|++.++|+++++ ++|+.+..+.|..  +.+++.++|++..+.
T Consensus        91 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A           91 LLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             EECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC---
T ss_pred             EecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHH
Confidence               01347788999999987777 6788877888875  677999999887554

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.25  E-value=5e-11  Score=90.03  Aligned_cols=87  Identities=13%  Similarity=0.339  Sum_probs=66.9

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHH---HHHHhhcCCCCeEEEEEecCCccchhh------------------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEE---LGTKLLDNKHGIVIAKVDCTQELSKDL------------------------  276 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~---~a~~~~~~~~~~~~~~id~~~~~~~~~------------------------  276 (324)
                      .+++++|.||++||++|+...|.+.+   +..++...  ++.++.++.+.  ..+.                        
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~--~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~  101 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG--TLRVLAIYPDE--NREEWATKAVYMPQGWIVGWNKAGDIRT  101 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT--SEEEEEEECSS--CHHHHHHHHTTSCTTCEEEECTTCHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC--CeEEEEEEecC--CHHHHHHHHHHcCCCcceeeCCccchhh
Confidence            46789999999999999999999988   77554333  58888888775  3322                        


Q ss_pred             hhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        277 CNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       277 ~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ...|++.++|+++++. +|+.+.   +..+.+++.++|.+..
T Consensus       102 ~~~~~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          102 RQLYDIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             TTCSCCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             HHHcCCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence            3479999999999994 666543   5578999999998764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.25  E-value=2.8e-11  Score=92.93  Aligned_cols=91  Identities=21%  Similarity=0.422  Sum_probs=73.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------ccchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------ELSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------~~~~~~~~~~~i  282 (324)
                      .+++++|.||++||++|+...|.+++++.+     .++.++.++.+.                     .....+...|++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  115 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV  115 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCc
Confidence            357899999999999999999999998743     257788877543                     113467788999


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .++|+++++ ++|+.+..+.|..+.+.+.++|.+.+..
T Consensus       116 ~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~  153 (156)
T 1kng_A          116 YGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  153 (156)
T ss_dssp             CSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             CccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            999977777 6888887889999999999999887754

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.25  E-value=1.4e-10  Score=88.77  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=75.2

Q ss_pred             CeeEecccc--ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh------------
Q psy14086        210 PVVSLTSEN--FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD------------  275 (324)
Q Consensus       210 ~v~~l~~~~--~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~------------  275 (324)
                      .+..++++.  +.+ ..+++++|.||++||++|+...|.+.++..++...  ++.++.++++.  ..+            
T Consensus        19 ~l~~~~G~~~~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~i~~d~--~~~~~~~~~~~~~~~   93 (152)
T 2lrt_A           19 QLKDLKGNTRSLTD-LKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ--GFEIYQISLDG--DEHFWKTSADNLPWV   93 (152)
T ss_dssp             CEEBTTSCEECTTT-GGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECSC--CHHHHHHHHTTCSSE
T ss_pred             EEEcCCCCEEeHHH-hCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC--CeEEEEEEccC--CHHHHHHHHhCCCce
Confidence            444455544  233 24678999999999999999999999999764433  58888898876  332            


Q ss_pred             -----------hhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHH
Q psy14086        276 -----------LCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       276 -----------~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                                 +.+.|++.++|+++++ ++|+.+..+.|..+.++...-+
T Consensus        94 ~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~~~~~  143 (152)
T 2lrt_A           94 CVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEAIKKL  143 (152)
T ss_dssp             EEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred             EEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence                       7788999999999999 5888888888887766554433

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.25  E-value=3.6e-11  Score=92.31  Aligned_cols=88  Identities=18%  Similarity=0.331  Sum_probs=73.4

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------cchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------QHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------~~~~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+.+.+.+++++++  +  ++.|+.++++                       ....+++.|++.
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  116 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--K--RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY  116 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T--TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C--CeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcC
Confidence            356789999999999999999999999877  3  5788877753                       345788899999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++++++ +|+...++.|..+.+.+.++|++.+.
T Consensus       117 ~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          117 GVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             SSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             ccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            999887775 58777788999999999999988764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.24  E-value=3.9e-11  Score=94.89  Aligned_cols=91  Identities=15%  Similarity=0.302  Sum_probs=74.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCe------EEEEecccc-chhhhhhC-------------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDV------SIAKIDCTQ-HRSICQSF-------------------  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i------~~~~vd~~~-~~~~~~~~-------------------  149 (324)
                      ..++++|.||++||++|+...+.|.+++++++.. .+      .|+.|+++. ....+++|                   
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            4567899999999999999999999999999763 26      999999887 45444444                   


Q ss_pred             ------CccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        150 ------DIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       150 ------~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                            ++..+|++++++. |+...++.|..+.++|.++|++.+.
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                  6789998888755 7777789999999999999998764

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.24  E-value=1.7e-10  Score=88.80  Aligned_cols=107  Identities=17%  Similarity=0.444  Sum_probs=79.7

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------c
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------E  271 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------~  271 (324)
                      .+..++++.+. ....+++++|.||++||++|+...|.+.+++.+ +.. .++.++.++.+.                 .
T Consensus        25 ~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~-~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d  102 (158)
T 3hdc_A           25 KLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKS-FPK-GDLVVLAVNVEKRFPEKYRRAPVSFNFLSD  102 (158)
T ss_dssp             EEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHH-SST-TSEEEEEEECSSSCCGGGGGCCCSCEEEEC
T ss_pred             eeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHH-ccc-CCeEEEEEeCCHHHHHHHHHcCCCceEEEC
Confidence            34445454432 122457899999999999999999999999966 442 268888888765                 1


Q ss_pred             cchhhhhhcCCCccceEEEE-ecCeeeeeecCC--CCHHHHHHHHHhhcc
Q psy14086        272 LSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGS--RDLEELYQFILKHKV  318 (324)
Q Consensus       272 ~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~--~~~~~l~~fi~~~~~  318 (324)
                      ....+.+.|++.++|+++++ ++|+.+..+.|.  .+..++.+.+.+...
T Consensus       103 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~  152 (158)
T 3hdc_A          103 ATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEG  152 (158)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC-
T ss_pred             chHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhcc
Confidence            23578899999999998888 688888888887  456788888776644

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.24  E-value=4.4e-11  Score=92.86  Aligned_cols=87  Identities=21%  Similarity=0.474  Sum_probs=72.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc------------------cc---------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT------------------QH---------------  142 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~------------------~~---------------  142 (324)
                      ..++++|.||++||++|+...+.+.+++++++   ++.|+.|+++                  ..               
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPS  112 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCC
Confidence            45678999999999999999999999999997   5888888876                  33               


Q ss_pred             -------hhhhhhCCccccceEEEEeC-CeEeeeecCCC-CHHHHHHHHHhhhC
Q psy14086        143 -------RSICQSFDIKSYPTLLWIES-GKKLDKFQGSR-TLETLVNYVSKMKG  187 (324)
Q Consensus       143 -------~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~-~~~~i~~fi~~~~~  187 (324)
                             ..+++.|+|.++|++++++. |+...  .|.. +.+.|.++|++.++
T Consensus       113 ~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          113 WIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             SEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred             eeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence                   27889999999999999976 54443  7888 99999999998765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.24  E-value=9.9e-11  Score=88.45  Aligned_cols=98  Identities=10%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CeeEecccc--ccccccCCcEEEEEeCCCChhhhhhhHhHHH---HHHHhhcCCCCeEEEEEecCCccchh---------
Q psy14086        210 PVVSLTSEN--FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEE---LGTKLLDNKHGIVIAKVDCTQELSKD---------  275 (324)
Q Consensus       210 ~v~~l~~~~--~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~---~a~~~~~~~~~~~~~~id~~~~~~~~---------  275 (324)
                      .+...+++.  +.+ ..+++++|.||++||++|+...|.+.+   +..++...  ++.++.++.+.  ..+         
T Consensus        15 ~l~~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~--~~~vi~i~~d~--~~~~~~~~~~~~   89 (142)
T 3eur_A           15 TYTLDSGVKGTLYQ-FPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK--KLKVLSIYPDE--ELDEWKKHRNDF   89 (142)
T ss_dssp             EEEETTSCEEETTT-CCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT--SEEEEEEECSS--CHHHHHHHGGGS
T ss_pred             EEEcCCCCEeeHHH-cCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC--CeEEEEEEcCC--CHHHHHHHHHhc
Confidence            344545544  223 345789999999999999999999999   88664443  68888888776  321         


Q ss_pred             ---------------hhhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHh
Q psy14086        276 ---------------LCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       276 ---------------~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                                     +.+.|++.++|+++++. +|+.+....   +.+++.+||++
T Consensus        90 ~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~e  142 (142)
T 3eur_A           90 AKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA---TLQKVEQYLAE  142 (142)
T ss_dssp             CTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE---CHHHHHHHHHC
T ss_pred             ccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC---CHHHHHHHHhC
Confidence                           46789999999999995 666554333   57888888863

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.23  E-value=3.5e-11  Score=93.71  Aligned_cols=87  Identities=10%  Similarity=0.260  Sum_probs=71.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec-----------------------cccchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID-----------------------CTQHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd-----------------------~~~~~~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+.+.|.+++++++     ++.++.|+                       ++.+..+++.|+|.
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  124 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY  124 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcc
Confidence            566789999999999999999999999886     35566665                       34456788999999


Q ss_pred             ccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|+++++. +|+...++.|..+.+.+.++|++.+.
T Consensus       125 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          125 GAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             SSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             ccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            999777765 58777788999999999999888764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.23  E-value=1.2e-10  Score=92.11  Aligned_cols=93  Identities=15%  Similarity=0.291  Sum_probs=72.7

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCe------EEEEEecCCccchhhhhhc-----------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI------VIAKVDCTQELSKDLCNQE-----------------  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~------~~~~id~~~~~~~~~~~~~-----------------  280 (324)
                      .+++++|.||++||++|+...|.+.++..++...  ++      .|+.++++.. ..+..+.|                 
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~~~~~v~~v~v~~d~~-~~~~~~~~~~~~~~~~~~~~d~~~~  134 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA--GNGDTPGGTVLGINVRDY-SRDIAQDFVTDNGLDYPSIYDPPFM  134 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC--C---CCSEEEEEEECSCC-CHHHHHHHHHHTTCCSCEEECTTCG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc--CCCccCCcEEEEEECCCC-CHHHHHHHHHHcCCCccEEECCcch
Confidence            4678999999999999999999999999775433  35      8888887651 12223333                 


Q ss_pred             --------CCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        281 --------GVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       281 --------~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                              ++.++|+++++ ++|+.+..+.|..+.++|.++|++.+.+
T Consensus       135 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          135 TAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             GGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             HHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence                    67899987777 6788888889999999999999988754

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.23  E-value=5.8e-11  Score=90.96  Aligned_cols=93  Identities=15%  Similarity=0.332  Sum_probs=75.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----------------------hhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----------------------RSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----------------------~~~~~~~~i~  152 (324)
                      .+++++|.||++||++|+...+.+.++++++.+. ++.|+.|+++..                       ..+++.|++.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence            4567899999999999999999999999999763 588888887754                       3488899999


Q ss_pred             ccceEEEEeC-CeEeeeecCCC--CHHHHHHHHHhhhCCC
Q psy14086        153 SYPTLLWIES-GKKLDKFQGSR--TLETLVNYVSKMKGPL  189 (324)
Q Consensus       153 ~~P~~~~~~~-g~~~~~~~g~~--~~~~i~~fi~~~~~~~  189 (324)
                      ++|++++++. |+...++.|..  +.+++.++|+++....
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~  145 (154)
T 3kcm_A          106 GVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKA  145 (154)
T ss_dssp             SBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred             CCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence            9998888854 77777888875  7789999999887644

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.23  E-value=1.5e-10  Score=91.70  Aligned_cols=141  Identities=13%  Similarity=0.266  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHH
Q psy14086        174 TLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGT  252 (324)
Q Consensus       174 ~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~  252 (324)
                      ...++.+++..+..+.........    .+....+-.+..++++.+. +-..+++++|.||++||++|+...|.++++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~   87 (186)
T 1jfu_A           12 AAVATAQKIAPLAHGEVAALTMAS----APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQG   87 (186)
T ss_dssp             HHHHHHHHHGGGCCGGGTTCEECC----SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcchhhcchhhhhcccc----CCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHH
Confidence            345677777776655422211100    1111112234444444432 11246789999999999999999999999996


Q ss_pred             HhhcCCCCeEEEEEecCCc---cchhhhhhcCCC-----------------------ccceEEEE-ecCeeeeeecCCCC
Q psy14086        253 KLLDNKHGIVIAKVDCTQE---LSKDLCNQEGVD-----------------------GFPSIYVY-KNGVRTAEYNGSRD  305 (324)
Q Consensus       253 ~~~~~~~~~~~~~id~~~~---~~~~~~~~~~i~-----------------------~~P~l~~~-~~g~~~~~~~g~~~  305 (324)
                      ++...  ++.++.++.+..   ....+.+++++.                       ++|+++++ ++|+.+..+.|..+
T Consensus        88 ~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~  165 (186)
T 1jfu_A           88 KLSGP--NFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAE  165 (186)
T ss_dssp             HHCBT--TEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCC
T ss_pred             HhccC--CcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCc
Confidence            64323  688888887751   114555666664                       89999999 67888878888754


Q ss_pred             --HHHHHHHHHhhcccC
Q psy14086        306 --LEELYQFILKHKVES  320 (324)
Q Consensus       306 --~~~l~~fi~~~~~~~  320 (324)
                        .+++.++|++.+++.
T Consensus       166 ~~~~~l~~~l~~ll~~~  182 (186)
T 1jfu_A          166 WASEDALKLIRAATGKA  182 (186)
T ss_dssp             TTSHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHhccc
Confidence              789999999887643

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.21  E-value=8.9e-11  Score=88.71  Aligned_cols=84  Identities=15%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHH---HHHhcCCCCCeEEEEeccccchh------------------------hhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQE---LASHFKTEEDVSIAKIDCTQHRS------------------------ICQS  148 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~---la~~~~~~~~i~~~~vd~~~~~~------------------------~~~~  148 (324)
                      ..++++|.||++||++|+...|.+.+   ++++++. .++.++.|+.+....                        +.+.
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA-KKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc-CCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            34678999999999999999999999   9999965 268888888775422                        4788


Q ss_pred             CCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHH
Q psy14086        149 FDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       149 ~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~  183 (324)
                      |+|.++|++++++. |+...+..   +.++|.+||+
T Consensus       109 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (142)
T 3eur_A          109 YDLRAIPTLYLLDKNKTVLLKDA---TLQKVEQYLA  141 (142)
T ss_dssp             SCCTTCSEEEEECTTCBEEEEEE---CHHHHHHHHH
T ss_pred             cCCCcCCeEEEECCCCcEEecCC---CHHHHHHHHh
Confidence            99999999999976 55554433   5788988886

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.21  E-value=1.9e-11  Score=94.82  Aligned_cols=77  Identities=25%  Similarity=0.388  Sum_probs=60.3

Q ss_pred             ccccccc-cCCcEEEEEeCCCChhhhhhhH-hH--HHHHHHhhcCCCCeEEEEEecCCccchhhhhhc--------CCCc
Q psy14086        217 ENFNDVI-KSGTVFIKFFAPWCGHCKRLAP-TW--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE--------GVDG  284 (324)
Q Consensus       217 ~~~~~~~-~~~~~~v~f~~~~c~~C~~~~~-~~--~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~  284 (324)
                      +.|.... ++++++|.||++||++|+.+.+ .|  .+++ +.+..  ++.++.+|.+.  .+++...|        ++.+
T Consensus        30 ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va-~~l~~--~fv~ikVD~de--~~~l~~~y~~~~q~~~gv~g  104 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVA-GLMNE--AFVSIKVDREE--RPDIDNIYMTVCQIILGRGG  104 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHH-HHHHH--HCEEEEEETTT--CHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHH-HHHHh--cCceeeeCCcc--cCcHHHHHHHHHHHHcCCCC
Confidence            4465544 3578999999999999999988 44  4566 33433  58999999988  78888877        9999


Q ss_pred             cceEEEEe-cCeeee
Q psy14086        285 FPSIYVYK-NGVRTA  298 (324)
Q Consensus       285 ~P~l~~~~-~g~~~~  298 (324)
                      +|++++|. +|+.+.
T Consensus       105 ~Pt~v~l~~dG~~v~  119 (173)
T 3ira_A          105 WPLNIIMTPGKKPFF  119 (173)
T ss_dssp             SSEEEEECTTSCEEE
T ss_pred             CcceeeECCCCCcee
Confidence            99999996 777653

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.20  E-value=1.3e-10  Score=89.58  Aligned_cols=90  Identities=18%  Similarity=0.440  Sum_probs=74.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------------------chhhhhhCCccccce
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------------------HRSICQSFDIKSYPT  156 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------------------~~~~~~~~~i~~~P~  156 (324)
                      ..++++|.||++||++|+...+.+.++++++... ++.|+.++++.                   ...+++.|++.++|+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcce
Confidence            4557899999999999999999999999999842 69999998876                   678999999999999


Q ss_pred             EEEEeC-CeEeeeecCC--CCHHHHHHHHHhhh
Q psy14086        157 LLWIES-GKKLDKFQGS--RTLETLVNYVSKMK  186 (324)
Q Consensus       157 ~~~~~~-g~~~~~~~g~--~~~~~i~~fi~~~~  186 (324)
                      +++++. |+...++.|.  .+..++.+.+.+..
T Consensus       119 ~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~  151 (158)
T 3hdc_A          119 TFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLE  151 (158)
T ss_dssp             EEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC
T ss_pred             EEEEcCCCCEEEEEeCCCccchHHHHHHHHhhc
Confidence            888865 7777788887  45666766666543

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.20  E-value=6.4e-11  Score=89.43  Aligned_cols=88  Identities=19%  Similarity=0.483  Sum_probs=68.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHH---HHHhcCCCCCeEEEEeccccchhh------------------------hhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQE---LASHFKTEEDVSIAKIDCTQHRSI------------------------CQS  148 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~---la~~~~~~~~i~~~~vd~~~~~~~------------------------~~~  148 (324)
                      ..++++|.||++||++|+...|.+.+   +++.+++. .+.++.|+++.....                        ++.
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG-TLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT-SEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC-CeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            35678999999999999999999988   88888652 588888887754332                        448


Q ss_pred             CCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        149 FDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       149 ~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |+|.++|++++++. |+..  + +..+.++|.++|++..+
T Consensus       105 ~~v~~~P~~~lid~~G~i~--~-~~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRVI--L-KDTSMEQLIDYLATQAG  141 (142)
T ss_dssp             SCCCSSSEEEEECTTCBEE--E-CSCCHHHHHHHHHC---
T ss_pred             cCCCCCCeEEEECCCCCEE--e-cCCCHHHHHHHHHHHcc
Confidence            99999999999976 5443  2 56789999999987643

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.20  E-value=9.1e-11  Score=93.77  Aligned_cols=93  Identities=13%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             cCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------------cchhh
Q psy14086         96 SLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------------QHRSI  145 (324)
Q Consensus        96 ~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------------~~~~~  145 (324)
                      ..+ +++|.||++||++|+...+.+.+++++++.+ ++.|+.|+++                             .+..+
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEV  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHH
Confidence            344 4899999999999999999999999999762 4888888873                             34578


Q ss_pred             hhhCCccccceEEEEeC-CeEeee---------ecCCCCHHHHHHHHHhhhCCC
Q psy14086        146 CQSFDIKSYPTLLWIES-GKKLDK---------FQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       146 ~~~~~i~~~P~~~~~~~-g~~~~~---------~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ++.|++..+|++++++. |+...+         +.|..+.++|.+.|++.+.+.
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~  176 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR  176 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence            89999999999999965 766655         457778999999999998754

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.19  E-value=7.8e-12  Score=91.16  Aligned_cols=91  Identities=16%  Similarity=0.380  Sum_probs=65.2

Q ss_pred             ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-----hhhhhhcCCCccceEEEEec
Q psy14086        219 FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-----KDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~i~~~P~l~~~~~  293 (324)
                      +++.+..+++++ ||++||++|+.+.|.|++++.       .+.++.+|.+.  .     .++.+.+++.++|++  |.+
T Consensus        13 ~~~~~~~~~vv~-f~a~~C~~C~~~~~~l~~~~~-------~~~~v~v~~~~--~~~~~~~~l~~~~~v~~~Pt~--~~~   80 (116)
T 2e7p_A           13 AKELASSAPVVV-FSKTYCGYCNRVKQLLTQVGA-------SYKVVELDELS--DGSQLQSALAHWTGRGTVPNV--FIG   80 (116)
T ss_dssp             HHHHHTSSSEEE-EECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGST--THHHHHHHHHHHHSCCSSCEE--EET
T ss_pred             HHHHHcCCCEEE-EECCCChhHHHHHHHHHHcCC-------CeEEEEccCCC--ChHHHHHHHHHHhCCCCcCEE--EEC
Confidence            445555556655 999999999999999998862       24555555544  3     468889999999999  568


Q ss_pred             CeeeeeecCCC---CHHHHHHHHHhhcccCC
Q psy14086        294 GVRTAEYNGSR---DLEELYQFILKHKVESH  321 (324)
Q Consensus       294 g~~~~~~~g~~---~~~~l~~fi~~~~~~~~  321 (324)
                      |+.+..+.|..   +.+.|.++|.+.....+
T Consensus        81 g~~v~~~~~~~~~~~~~~l~~~l~~~g~~~k  111 (116)
T 2e7p_A           81 GKQIGGCDTVVEKHQRNELLPLLQDAAATAK  111 (116)
T ss_dssp             TEEEECHHHHHHHHHTTCHHHHHHHTTC---
T ss_pred             CEEECChHHHHHHHhCChHHHHHHHcccccc
Confidence            88776666654   66789999987654333

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.19  E-value=1.5e-10  Score=88.65  Aligned_cols=87  Identities=8%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh-----------------------hhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-----------------------ICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~-----------------------~~~~~~i~  152 (324)
                      ..++++|.||++||++|+...|.+.++++++++. .+.++.|+++....                       +++.|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            4567899999999999999999999999999763 48899888875543                       88899999


Q ss_pred             ccceEEEEeC-CeEeeeecCCCCHHHHHHHHH
Q psy14086        153 SYPTLLWIES-GKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       153 ~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~  183 (324)
                      ++|++++++. |+...++.|..+.++...-..
T Consensus       113 ~~P~~~lid~~G~i~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             SCSEEEEEETTTEEEEETTTCSCHHHHHHHHH
T ss_pred             cCceEEEECCCCeEEEecCCHHHHHHHHHHHH
Confidence            9999999964 888888888877666554443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=2.8e-10  Score=86.78  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=78.7

Q ss_pred             CeeEeccccccc---cccCCcEEEEEeCCCChh--hhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc------------
Q psy14086        210 PVVSLTSENFND---VIKSGTVFIKFFAPWCGH--CKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL------------  272 (324)
Q Consensus       210 ~v~~l~~~~~~~---~~~~~~~~v~f~~~~c~~--C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~------------  272 (324)
                      .+..++++.+.-   -..+++++|.||++||++  |+...|.+.++..+ +....++.++.++.+...            
T Consensus        15 ~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~-~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~   93 (150)
T 3fw2_A           15 SLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKK-YKKNKYIGMLGISLDVDKQQWKDAIKRDTL   93 (150)
T ss_dssp             CEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHH-HTTCSSEEEEEEECCSCHHHHHHHHHHTTC
T ss_pred             EeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHH-hccCCCeEEEEEEcCCCHHHHHHHHHHhCC
Confidence            455555554321   224678999999999999  99999999999966 422236889988887621            


Q ss_pred             -----------chhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        273 -----------SKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       273 -----------~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                                 ...+.+.|++.++|+++++ ++|+.+..+.   +.+++.+.|++.+.+
T Consensus        94 ~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~~  149 (150)
T 3fw2_A           94 DWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIVEE  149 (150)
T ss_dssp             CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHHHH
T ss_pred             CceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHHhc
Confidence                       2367889999999999999 5777665543   788899988887653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.19  E-value=1.1e-10  Score=91.79  Aligned_cols=90  Identities=21%  Similarity=0.416  Sum_probs=72.4

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------ccchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------ELSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------~~~~~~~~~~~i  282 (324)
                      .+++++|.||++||++|+...|.++++..+      ++.++.|+.+.                     .....+.+.|++
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  130 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ------GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV  130 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCC
Confidence            457899999999999999999999999843      36677776422                     114567788999


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .++|+++++ ++|+.+..+.|..+.+.+.++|.+.+..
T Consensus       131 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  168 (176)
T 3kh7_A          131 YGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQ  168 (176)
T ss_dssp             CSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred             CCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            999988887 5788888889999999999998887653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.17  E-value=1.8e-10  Score=90.43  Aligned_cols=87  Identities=17%  Similarity=0.298  Sum_probs=72.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-----------------------ccchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-----------------------TQHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+...|.+++++++     ++.++.|++                       +.+..+++.|++.
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  131 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY  131 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC
Confidence            456789999999999999999999999987     366666663                       3346788899999


Q ss_pred             ccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++++++. |+...++.|..+.+.+.++|.+.+.
T Consensus       132 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          132 GAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             SSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            9998888865 7777788999999999999988775

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.16  E-value=2.1e-10  Score=91.63  Aligned_cols=94  Identities=12%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             cCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------------ccchh
Q psy14086        224 KSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------------ELSKD  275 (324)
Q Consensus       224 ~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------------~~~~~  275 (324)
                      .++ +++|.||++||++|+...|.+.++..++...  ++.++.++++.                           +.+..
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~  121 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK--GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQE  121 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchH
Confidence            345 4999999999999999999999999664433  58888888742                           11456


Q ss_pred             hhhhcCCCccceEEEE-ecCeeeee---------ecCCCCHHHHHHHHHhhccc
Q psy14086        276 LCNQEGVDGFPSIYVY-KNGVRTAE---------YNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       276 ~~~~~~i~~~P~l~~~-~~g~~~~~---------~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +.+.|++.++|+++++ ++|+.+..         +.|..+.++|.+.|++.++.
T Consensus       122 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          122 VAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEG  175 (196)
T ss_dssp             HHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcC
Confidence            7889999999999999 57777655         45777889999999987764

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.16  E-value=2.3e-10  Score=90.86  Aligned_cols=92  Identities=10%  Similarity=0.098  Sum_probs=74.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------------cchhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------------QHRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------------~~~~~~  146 (324)
                      ..++++|.||++||++|+...+.++++++++++  ++.|+.|+++                             ....++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~--~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc--CeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            346789999999999999999999999999987  4888888873                             345788


Q ss_pred             hhCCccccceEEEEeC-CeEeee--------ecCCCCHHHHHHHHHhhhCCC
Q psy14086        147 QSFDIKSYPTLLWIES-GKKLDK--------FQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       147 ~~~~i~~~P~~~~~~~-g~~~~~--------~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +.|++..+|++++++. |+...+        +.|..+.++|.+.|++.+.+.
T Consensus       110 ~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence            9999999999999965 655433        123346889999999998765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.15  E-value=1.9e-10  Score=87.37  Aligned_cols=72  Identities=21%  Similarity=0.451  Sum_probs=60.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc------------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ------------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~------------------------~~~~~~~~~i  151 (324)
                      ..++++|.||++||++|+.+.|.+.++++++++..++.++.|+++.                        ...+++.|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            4567899999999999999999999999999843368888887764                        3578999999


Q ss_pred             cccceEEEEe--CCeEee
Q psy14086        152 KSYPTLLWIE--SGKKLD  167 (324)
Q Consensus       152 ~~~P~~~~~~--~g~~~~  167 (324)
                      .++|++++++  +|+.+.
T Consensus       107 ~~~Pt~~lid~~~G~i~~  124 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDVVT  124 (146)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCeEEE
Confidence            9999999998  466554

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.15  E-value=3.5e-10  Score=87.73  Aligned_cols=100  Identities=20%  Similarity=0.332  Sum_probs=76.2

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC------------------Cc
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT------------------QE  271 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~------------------~~  271 (324)
                      +..++++.+. .-..+++++|.||++||++|+...|.+.++..+ +.   ++.++.++++                  . 
T Consensus        22 l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~-~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~-   96 (165)
T 3ha9_A           22 LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEK-YR---EISVIAIDFWTAEALKALGLNKPGYPPPD-   96 (165)
T ss_dssp             EEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHH-CT---TEEEEEEECCSHHHHHHHTCCSTTSCCCC-
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHH-cC---CcEEEEEEecccccccccccccccCCCCC-
Confidence            4444444432 112457899999999999999999999999965 43   5889888887                  2 


Q ss_pred             cc----------------------hhhhhhcCCCccceEEEEe-cCeeeeeecCCC-CHHHHHHHHHhhcc
Q psy14086        272 LS----------------------KDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSR-DLEELYQFILKHKV  318 (324)
Q Consensus       272 ~~----------------------~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~-~~~~l~~fi~~~~~  318 (324)
                       .                      ..+.+.|++.++|+++++. +|+.+.  .|.. +.+.|.++|++.++
T Consensus        97 -~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A           97 -TPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             -CHHHHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred             -CHHHHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence             2                      2678889999999999994 666654  7888 89999999987653

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.15  E-value=1.9e-10  Score=87.05  Aligned_cols=72  Identities=24%  Similarity=0.454  Sum_probs=60.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc------------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ------------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~------------------------~~~~~~~~~i  151 (324)
                      ..++++|.||++||++|+.+.|.+.+++++++.+.++.++.|+++.                        ...+++.|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            4567899999999999999999999999999843378888887764                        2578999999


Q ss_pred             cccceEEEEe--CCeEee
Q psy14086        152 KSYPTLLWIE--SGKKLD  167 (324)
Q Consensus       152 ~~~P~~~~~~--~g~~~~  167 (324)
                      .++|++++++  +|+...
T Consensus       107 ~~~P~~~lid~~~G~i~~  124 (144)
T 1i5g_A          107 KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCcEEe
Confidence            9999999997  465554

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.15  E-value=2.2e-10  Score=99.34  Aligned_cols=94  Identities=17%  Similarity=0.236  Sum_probs=77.7

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------------ccchhhhh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------------ELSKDLCN  278 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------------~~~~~~~~  278 (324)
                      .+++++|.||++||++|+...|.+.+++.++...  ++.++.|+++.                         +....+.+
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~--~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~  158 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWT  158 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC--CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHH
Confidence            4678999999999999999999999999765433  58888887642                         01346788


Q ss_pred             hcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        279 QEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       279 ~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .|+|.++|+++++ ++|+.+..+.|..+.+.+.++|++.+.+
T Consensus       159 ~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e  200 (352)
T 2hyx_A          159 NYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLND  200 (352)
T ss_dssp             HTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred             HcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            8999999999988 6888888889999999999999987753

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.14  E-value=1.1e-10  Score=82.45  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      ..+.+++|+++||++|+.+.+.+++++.       ++.|..+|++..+++++.++++ .++|++  |.+|+..  ..|..
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-------~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~--~~~g~   82 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-------RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL--MMHRV   82 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS-------SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE--EESSC
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh-------CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE--EecCC
Confidence            4568999999999999999999887652       3889999998322788999999 999976  5677654  34557


Q ss_pred             CHHHHHHHHHhhccc
Q psy14086        305 DLEELYQFILKHKVE  319 (324)
Q Consensus       305 ~~~~l~~fi~~~~~~  319 (324)
                      +.+.|.++|.+.+..
T Consensus        83 ~~~~l~~~l~~~~~~   97 (100)
T 1wjk_A           83 NTSKLEKQLRKLSGP   97 (100)
T ss_dssp             CHHHHHHHHHSSSCS
T ss_pred             CHHHHHHHHHHHHhh
Confidence            899999999887653

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.14  E-value=2e-10  Score=89.21  Aligned_cols=72  Identities=21%  Similarity=0.487  Sum_probs=60.5

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc------------------------hhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------------RSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~------------------------~~~~~~~~i  151 (324)
                      ..++++|.||++||++|+...|.+.++++++++..++.++.|+++..                        ..+++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            35678999999999999999999999999998644788888877654                        678999999


Q ss_pred             cccceEEEEeC--CeEee
Q psy14086        152 KSYPTLLWIES--GKKLD  167 (324)
Q Consensus       152 ~~~P~~~~~~~--g~~~~  167 (324)
                      .++|++++++.  |+.+.
T Consensus       127 ~~~Pt~~lid~~~G~iv~  144 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTVT  144 (165)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEe
Confidence            99999999984  55443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=3.3e-10  Score=86.36  Aligned_cols=88  Identities=17%  Similarity=0.306  Sum_probs=72.2

Q ss_pred             cCCCEEEEEeCCCCHh--HhhHHHHHHHHHHhc-CCCCCeEEEEeccccc-------------------------hhhhh
Q psy14086         96 SLGNHFVKFYAPWCGH--CQSLAPVWQELASHF-KTEEDVSIAKIDCTQH-------------------------RSICQ  147 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~--c~~~~~~~~~la~~~-~~~~~i~~~~vd~~~~-------------------------~~~~~  147 (324)
                      ..++++|.||++||++  |+...|.+.++++++ ++ ..+.|+.|+.+..                         ..+++
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN-KYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC-SSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            3567899999999999  999999999999999 54 2588888887754                         37889


Q ss_pred             hCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        148 SFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       148 ~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .|++.++|++++++. |+...++   .+.+++.+.|++.+.
T Consensus       111 ~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          111 QYSIYKIPANILLSSDGKILAKN---LRGEELKKKIENIVE  148 (150)
T ss_dssp             HTTCCSSSEEEEECTTSBEEEES---CCHHHHHHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCEEEEcc---CCHHHHHHHHHHHHh
Confidence            999999999999965 6665544   388889998887753

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.14  E-value=3.7e-11  Score=87.52  Aligned_cols=88  Identities=13%  Similarity=0.281  Sum_probs=66.1

Q ss_pred             hhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----hhhhhhCCccccceEEEEeCC
Q psy14086         89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----RSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      +.+.+.+..+++++ ||++||++|+.+.+.|++++..      +.++.+|.+..     ..+++.+|+.++|++  |.+|
T Consensus        11 ~~~~~~~~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~------~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g   81 (116)
T 2e7p_A           11 KKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQVGAS------YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGG   81 (116)
T ss_dssp             HHHHHHHTSSSEEE-EECTTCHHHHHHHHHHHHHTCC------CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred             HHHHHHHcCCCEEE-EECCCChhHHHHHHHHHHcCCC------eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence            34555566656555 9999999999999999988533      56777776654     568999999999998  4578


Q ss_pred             eEeeeecCCC---CHHHHHHHHHhh
Q psy14086        164 KKLDKFQGSR---TLETLVNYVSKM  185 (324)
Q Consensus       164 ~~~~~~~g~~---~~~~i~~fi~~~  185 (324)
                      +.+..+.|..   +.+.|.++|.+.
T Consensus        82 ~~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           82 KQIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             EEEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             EEECChHHHHHHHhCChHHHHHHHc
Confidence            7776666544   566788888774

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.14  E-value=2.1e-10  Score=99.46  Aligned_cols=91  Identities=13%  Similarity=0.226  Sum_probs=78.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQS  148 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~  148 (324)
                      ..++++|.||++||++|+...|.|.+++++++.+ ++.|+.|+++                           ....+++.
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~-~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS-GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC-CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            3567899999999999999999999999999752 5888888764                           23578899


Q ss_pred             CCccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        149 FDIKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       149 ~~i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |+|..+|++++++ +|+...++.|..+.++|.++|++.+.
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            9999999999995 48888888999999999999998875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.13  E-value=5e-10  Score=88.66  Aligned_cols=92  Identities=16%  Similarity=0.420  Sum_probs=75.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----hhhhhhCCcc------------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----RSICQSFDIK------------------  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~------------------  152 (324)
                      ..++++|.||++||++|+...+.+++++++++. .++.++.|+++..     ..+++++++.                  
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  137 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSG-PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  137 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB-TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcc
Confidence            355789999999999999999999999999973 2688888887654     4667777774                  


Q ss_pred             -----ccceEEEEeC-CeEeeeecCCCC--HHHHHHHHHhhhCC
Q psy14086        153 -----SYPTLLWIES-GKKLDKFQGSRT--LETLVNYVSKMKGP  188 (324)
Q Consensus       153 -----~~P~~~~~~~-g~~~~~~~g~~~--~~~i~~fi~~~~~~  188 (324)
                           ++|++++++. |+...++.|..+  .+++.++|++.+..
T Consensus       138 ~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          138 IGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             ccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                 7999999965 777778888764  78999999998874

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.12  E-value=2.5e-10  Score=86.35  Aligned_cols=72  Identities=24%  Similarity=0.519  Sum_probs=59.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc------------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ------------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~------------------------~~~~~~~~~i  151 (324)
                      ..++++|.||++||++|+...|.+.++++++++..++.++.|+++.                        ...+++.|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            4567899999999999999999999999999843368888877764                        3468899999


Q ss_pred             cccceEEEEe--CCeEee
Q psy14086        152 KSYPTLLWIE--SGKKLD  167 (324)
Q Consensus       152 ~~~P~~~~~~--~g~~~~  167 (324)
                      .++|++++++  +|+.+.
T Consensus       107 ~~~Pt~~lid~~~G~i~~  124 (144)
T 1o73_A          107 ESIPTLITINADTGAIIG  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCeEEe
Confidence            9999999998  465554

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.12  E-value=3.6e-11  Score=100.83  Aligned_cols=87  Identities=23%  Similarity=0.351  Sum_probs=64.9

Q ss_pred             hhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc-ccchhhhhhCCccccceEEEEeCCeEee
Q psy14086         89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC-TQHRSICQSFDIKSYPTLLWIESGKKLD  167 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~-~~~~~~~~~~~i~~~P~~~~~~~g~~~~  167 (324)
                      ..+.+.+.+. .+++||++||++|+.+.|.|+++++++.   .+.+..+|. +++++++++++|+++||+++  +|+   
T Consensus       190 ~~la~~l~~~-~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~---  260 (291)
T 3kp9_A          190 VGLAAHLRQI-GGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---  260 (291)
T ss_dssp             HHHHHHHHHT-TCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE---
T ss_pred             HHHHHHhCCC-CEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE---
Confidence            3455544333 3689999999999999999999997652   122222222 33789999999999999655  775   


Q ss_pred             eecCCCCHHHHHHHHHh
Q psy14086        168 KFQGSRTLETLVNYVSK  184 (324)
Q Consensus       168 ~~~g~~~~~~i~~fi~~  184 (324)
                      +|.|.++.++|.+|+..
T Consensus       261 ~~~G~~~~~~L~~~l~~  277 (291)
T 3kp9_A          261 TYTGVRSLEALAVASGY  277 (291)
T ss_dssp             EEESCCCHHHHHHHTCC
T ss_pred             EecCCCCHHHHHHHHCC
Confidence            38999999999999854

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.09  E-value=8.2e-10  Score=87.58  Aligned_cols=93  Identities=8%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------------ccchhh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------------ELSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------------~~~~~~  276 (324)
                      .+++++|.||++||++|+...|.++++..+ +..  ++.++.++.+.                           +....+
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~-~~~--~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  108 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAER-YRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEV  108 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHH-TTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHH-hhc--CeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchH
Confidence            457899999999999999999999999965 444  28888888732                           114567


Q ss_pred             hhhcCCCccceEEEE-ecCeeeee--------ecCCCCHHHHHHHHHhhccc
Q psy14086        277 CNQEGVDGFPSIYVY-KNGVRTAE--------YNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       277 ~~~~~i~~~P~l~~~-~~g~~~~~--------~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .+.|++.++|+++++ ++|+.+..        +.|..+.++|.+.|++.++.
T Consensus       109 ~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~  160 (188)
T 2cvb_A          109 AKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG  160 (188)
T ss_dssp             HHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             HHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcC
Confidence            889999999999999 56766543        22334678999999887754

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.09  E-value=2.5e-11  Score=101.81  Aligned_cols=79  Identities=24%  Similarity=0.429  Sum_probs=60.3

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC----ccchhhhhhcCCCccceEEEEecCeeeeeecCC
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ----ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGS  303 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~----~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~  303 (324)
                      .+|+||++||++|+.+.|.|++++++ +      .+  +|++.    .++++++++++|+++||+++  +|+.   |.|.
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~-l------~~--Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~  265 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQ-V------PY--VECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGV  265 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGG-S------CE--EESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHH-c------CE--EEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCC
Confidence            46899999999999999999999844 2      23  34431    12689999999999999644  7753   8899


Q ss_pred             CCHHHHHHHHHhhcccC
Q psy14086        304 RDLEELYQFILKHKVES  320 (324)
Q Consensus       304 ~~~~~l~~fi~~~~~~~  320 (324)
                      ++.+++.+|+.-....+
T Consensus       266 ~~~~~L~~~l~~~~~~~  282 (291)
T 3kp9_A          266 RSLEALAVASGYPLEEG  282 (291)
T ss_dssp             CCHHHHHHHTCCCC---
T ss_pred             CCHHHHHHHHCCCCccc
Confidence            99999999987554433

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.09  E-value=3.1e-10  Score=86.27  Aligned_cols=91  Identities=13%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe-c-Ceeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK-N-GVRTAE  299 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~-~-g~~~~~  299 (324)
                      +++++|+|+++||..|+.+....   .+++ ++.+.  ++.+..+|.+..+...+.+.|++.++|+++++. + |+.+..
T Consensus        42 ~K~vlvd~~a~wC~~C~~me~~vf~d~~V~-~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           42 NKWLMINIQNVQDFACQCLNRDVWSNEAVK-NIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHH-HHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             CCeEEEEEECCCCHhHHHHHHHhcCCHHHH-HHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence            46899999999999999985543   3444 33333  688999999775556788999999999999995 4 656656


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q psy14086        300 YNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       300 ~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +.| .+.+++.++|.+.+..
T Consensus       119 ~~g-~~~~~fl~~L~~~l~~  137 (153)
T 2dlx_A          119 WHQ-LDVSSFLDQVTGFLGE  137 (153)
T ss_dssp             ESS-CCHHHHHHHHHHHHHH
T ss_pred             cCC-CCHHHHHHHHHHHHHh
Confidence            666 8999999999887653

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.08  E-value=6.5e-10  Score=84.01  Aligned_cols=85  Identities=12%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc--------------------------hhhhhhC
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH--------------------------RSICQSF  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~--------------------------~~~~~~~  149 (324)
                      ..++++|.||++||++|+...|.+.+++++++.+ ++.++.|+.+..                          ..+++.|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            3456899999999999999999999999999753 688888876632                          2577889


Q ss_pred             CccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHh
Q psy14086        150 DIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       150 ~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      ++.++|+.++++. |+...+.   .+.+++.+++++
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  142 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVIIAAN---VTPEKLTEILKA  142 (143)
T ss_dssp             TGGGCCCEEEECTTSBEEEES---CCHHHHHHHHTC
T ss_pred             CCCCCCcEEEECCCCEEEEcc---CCHHHHHHHHHh
Confidence            9999999999985 6655433   357778877753

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.08  E-value=6.5e-10  Score=84.09  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------  271 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------  271 (324)
                      .+..++++.+. +...+++++|.||++||++|+...|.+.+++.+ +....++.++.++++..                 
T Consensus        12 ~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~   90 (144)
T 1i5g_A           12 NVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKA-HAEKKNFEVMLISWDESAEDFKDYYAKMPWLALP   90 (144)
T ss_dssp             EEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred             EEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHH-hccCCCEEEEEEeCCCCHHHHHHHHHhCCccccc
Confidence            35555555533 223467899999999999999999999999966 44223688888887751                 


Q ss_pred             -----cchhhhhhcCCCccceEEEEe--cCeeee
Q psy14086        272 -----LSKDLCNQEGVDGFPSIYVYK--NGVRTA  298 (324)
Q Consensus       272 -----~~~~~~~~~~i~~~P~l~~~~--~g~~~~  298 (324)
                           ....+.+.|++.++|+++++.  +|+.+.
T Consensus        91 ~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~  124 (144)
T 1i5g_A           91 FEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             TTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             cCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEe
Confidence                 124678899999999999996  676654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.05  E-value=2.4e-09  Score=83.37  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=76.8

Q ss_pred             cCCcEEEEEeCCCChh-hhhhhHhHHHHHHHhhc--CCCCeEEEEEecCCc--------------------------cch
Q psy14086        224 KSGTVFIKFFAPWCGH-CKRLAPTWEELGTKLLD--NKHGIVIAKVDCTQE--------------------------LSK  274 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~-C~~~~~~~~~~a~~~~~--~~~~~~~~~id~~~~--------------------------~~~  274 (324)
                      .+++++|.||++||++ |+...|.++++..++..  ...++.++.|+++..                          ...
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4578999999999998 99999999999966432  113688888887631                          012


Q ss_pred             hhhhhcCCCccc---------------eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcccCCC
Q psy14086        275 DLCNQEGVDGFP---------------SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVESHD  322 (324)
Q Consensus       275 ~~~~~~~i~~~P---------------~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~~~~  322 (324)
                      .+.+.|++...|               +++++ ++|+.+..+.|..+.++|.+.|++.+...+.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~  168 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRS  168 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence            467789999888               77666 6888888889999999999999988775443

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.05  E-value=1.8e-09  Score=87.79  Aligned_cols=90  Identities=12%  Similarity=0.253  Sum_probs=74.2

Q ss_pred             CCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------------cchhhh
Q psy14086         97 LGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------------QHRSIC  146 (324)
Q Consensus        97 ~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------------~~~~~~  146 (324)
                      .+. ++|.||++||++|+...+.++++++++++. .+.|+.|+++                             ....++
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ-GLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT-TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            454 899999999999999999999999999863 4888888873                             346789


Q ss_pred             hhCCccccceEEEEeC-CeEeeeecC-----------CCCHHHHHHHHHhhhCCC
Q psy14086        147 QSFDIKSYPTLLWIES-GKKLDKFQG-----------SRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       147 ~~~~i~~~P~~~~~~~-g~~~~~~~g-----------~~~~~~i~~fi~~~~~~~  189 (324)
                      +.|++..+|++++++. |+..  |.|           ..+.++|.+.|++.+.+.
T Consensus       137 ~~~~v~~~P~~~liD~~G~i~--~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRLV--YHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBEE--EEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             HHcCCCCCCeEEEECCCCcEE--EeccccccccccccccCHHHHHHHHHHHHcCC
Confidence            9999999999999965 5543  443           346789999999998865

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.04  E-value=2.1e-09  Score=87.31  Aligned_cols=105  Identities=11%  Similarity=0.264  Sum_probs=76.7

Q ss_pred             CCeeEeccccc--cccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------
Q psy14086        209 EPVVSLTSENF--NDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------  270 (324)
Q Consensus       209 ~~v~~l~~~~~--~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------  270 (324)
                      -.+..++++.+  .++ .++ +++|.||++||++|+...|.+.++..++...  ++.++.|+.+.               
T Consensus        41 f~l~~~~G~~v~l~~~-~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~d~~~~~~~~  117 (218)
T 3u5r_E           41 FVLPDAGGNLFTLAEF-KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ--GLAVVAINSNDAQAFPEETLERVGAE  117 (218)
T ss_dssp             CCEECTTCCEECGGGG-TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT--TEEEEEEECSCTTTCGGGSHHHHHHH
T ss_pred             cEeECCCCCEEeHHHh-CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccccccCCHHHHHHH
Confidence            34555555543  332 355 4999999999999999999999999764333  58888888841               


Q ss_pred             ------------ccchhhhhhcCCCccceEEEE-ecCeeeeeecC-----------CCCHHHHHHHHHhhcc
Q psy14086        271 ------------ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNG-----------SRDLEELYQFILKHKV  318 (324)
Q Consensus       271 ------------~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g-----------~~~~~~l~~fi~~~~~  318 (324)
                                  +....+.+.|++.++|+++++ ++|+.+  |.|           ..+.+.|.+.|++.+.
T Consensus       118 ~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~--~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          118 VKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLV--YHGQFDDARPGNGKDVTGADLRAAVDAVLK  187 (218)
T ss_dssp             HHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEE--EEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred             HHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCCcEE--EeccccccccccccccCHHHHHHHHHHHHc
Confidence                        114578889999999999999 567654  333           3457889999988765

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.03  E-value=1.3e-09  Score=84.51  Aligned_cols=74  Identities=23%  Similarity=0.443  Sum_probs=59.2

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc----------------------hhhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS----------------------KDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~----------------------~~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.+++.+ +....++.++.++++....                      ..+.+.|+
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYS  125 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHH-hccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcC
Confidence            467899999999999999999999999966 4432368888888776211                      57889999


Q ss_pred             CCccceEEEEe-c-Ceeee
Q psy14086        282 VDGFPSIYVYK-N-GVRTA  298 (324)
Q Consensus       282 i~~~P~l~~~~-~-g~~~~  298 (324)
                      |.++|+++++. + |+.+.
T Consensus       126 v~~~Pt~~lid~~~G~iv~  144 (165)
T 3s9f_A          126 VESIPTLIGLNADTGDTVT  144 (165)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEeCCCCEEEe
Confidence            99999999997 3 66553

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.03  E-value=3.5e-09  Score=81.79  Aligned_cols=96  Identities=13%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             cCCcEEEEEeCCCChh-hhhhhHhHHHHHHHhhcC--CCCeEEEEEecCCcc--------------------------ch
Q psy14086        224 KSGTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDN--KHGIVIAKVDCTQEL--------------------------SK  274 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~-C~~~~~~~~~~a~~~~~~--~~~~~~~~id~~~~~--------------------------~~  274 (324)
                      .+++++|.||++||++ |+...|.++++..++...  ..++.++.++++...                          ..
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4678999999999998 999999999999664331  126788888775410                          11


Q ss_pred             hhhhhcCCCccc---------------eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        275 DLCNQEGVDGFP---------------SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       275 ~~~~~~~i~~~P---------------~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .+.+.|++...|               +++++ ++|+.+..+.|..+.++|.+.|.+.++.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  162 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP  162 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHGG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            367789999999               66666 6888888888989999999999988754

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.03  E-value=9.1e-10  Score=83.51  Aligned_cols=86  Identities=16%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-----------------
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-----------------  272 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-----------------  272 (324)
                      +..+++ .+. +...+++++|.||++||++|+...|.+.+++.+ +....++.++.++++...                 
T Consensus        14 l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (146)
T 1o8x_A           14 LRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPF   91 (146)
T ss_dssp             EEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCG
T ss_pred             EEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHH-hhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeecc
Confidence            445555 422 122457899999999999999999999999966 442236888888877511                 


Q ss_pred             -----chhhhhhcCCCccceEEEEe--cCeeee
Q psy14086        273 -----SKDLCNQEGVDGFPSIYVYK--NGVRTA  298 (324)
Q Consensus       273 -----~~~~~~~~~i~~~P~l~~~~--~g~~~~  298 (324)
                           ...+++.|+|.++|+++++.  +|+.+.
T Consensus        92 ~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~  124 (146)
T 1o8x_A           92 AQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT  124 (146)
T ss_dssp             GGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             chhhHHHHHHHHhCCCCCCEEEEEECCCCeEEE
Confidence                 24678899999999999997  676654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.02  E-value=1.1e-09  Score=83.15  Aligned_cols=91  Identities=11%  Similarity=0.171  Sum_probs=71.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecccc--chhhhhhCCccccceEEEEeC--CeEeee
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQ--HRSICQSFDIKSYPTLLWIES--GKKLDK  168 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~~--g~~~~~  168 (324)
                      ++++++|+|+++||..|+.+....   .++.+.++.  ++.++.+|.+.  ...++++|++.++|+++++++  |+.+..
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence            466889999999999999986544   445554433  68899998864  456899999999999999976  456666


Q ss_pred             ecCCCCHHHHHHHHHhhhCCC
Q psy14086        169 FQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       169 ~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +.| .+++++.++|++++...
T Consensus       119 ~~g-~~~~~fl~~L~~~l~~~  138 (153)
T 2dlx_A          119 WHQ-LDVSSFLDQVTGFLGEH  138 (153)
T ss_dssp             ESS-CCHHHHHHHHHHHHHHT
T ss_pred             cCC-CCHHHHHHHHHHHHHhc
Confidence            655 89999999999887643

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.02  E-value=1.8e-09  Score=84.11  Aligned_cols=92  Identities=13%  Similarity=0.163  Sum_probs=74.7

Q ss_pred             cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcCC---CCCeEEEEeccccc----------------------------h
Q psy14086         96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKT---EEDVSIAKIDCTQH----------------------------R  143 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~---~~~i~~~~vd~~~~----------------------------~  143 (324)
                      ..++++|.||++||++ |....+.+++++++++.   ..++.++.|+++..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3457899999999998 99999999999999952   12688877776521                            2


Q ss_pred             hhhhhCCccccc---------------eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        144 SICQSFDIKSYP---------------TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       144 ~~~~~~~i~~~P---------------~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .+++.||+...|               ++++++. |+...++.|..+.++|.+.|++.+.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            578889998888               7777755 8888888999999999999998875

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.02  E-value=6.5e-10  Score=78.44  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=64.9

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeCCeEeeeecCCCC
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      ..+.+++|+++||++|+.+.+.+++++.      .+.|..+|++  ++..++++|| .++|+++  .+|+..  ..+..+
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~~~--~~~g~~   83 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQFL--MMHRVN   83 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSSEE--EESSCC
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCEEE--EecCCC
Confidence            4467899999999999999999887642      3889999988  7789999999 9999763  466654  356689


Q ss_pred             HHHHHHHHHhhhC
Q psy14086        175 LETLVNYVSKMKG  187 (324)
Q Consensus       175 ~~~i~~fi~~~~~  187 (324)
                      .+.|.++|.+.+.
T Consensus        84 ~~~l~~~l~~~~~   96 (100)
T 1wjk_A           84 TSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987664

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.01  E-value=4.3e-10  Score=87.74  Aligned_cols=90  Identities=12%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCC--CCeEEEEeccccc----------------------------hh
Q psy14086         96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTE--EDVSIAKIDCTQH----------------------------RS  144 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~--~~i~~~~vd~~~~----------------------------~~  144 (324)
                      ..++++|.||++||++ |....+.+.+++++++..  .++.++.|+++..                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3557899999999997 999999999999999742  2588888887632                            24


Q ss_pred             hhhhCC---------------ccccceEEEEeCCeEeeeecCCC--CHHHHHHHHHhh
Q psy14086        145 ICQSFD---------------IKSYPTLLWIESGKKLDKFQGSR--TLETLVNYVSKM  185 (324)
Q Consensus       145 ~~~~~~---------------i~~~P~~~~~~~g~~~~~~~g~~--~~~~i~~fi~~~  185 (324)
                      +++.|+               +.+.|+++++++|+...++.|..  +.++|.+.|+++
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            555555               45789999999777777788887  899999998865

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.01  E-value=1.6e-09  Score=81.86  Aligned_cols=74  Identities=22%  Similarity=0.447  Sum_probs=58.8

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------------------chhhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------------------SKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------------------~~~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.+++.+ +....++.++.++++...                      ...+.+.|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHH-hccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            457899999999999999999999999966 442236888888877521                      246788899


Q ss_pred             CCccceEEEEe--cCeeee
Q psy14086        282 VDGFPSIYVYK--NGVRTA  298 (324)
Q Consensus       282 i~~~P~l~~~~--~g~~~~  298 (324)
                      +.++|+++++.  +|+.+.
T Consensus       106 v~~~Pt~~lid~~~G~i~~  124 (144)
T 1o73_A          106 VESIPTLITINADTGAIIG  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEECCCCeEEe
Confidence            99999999998  666553

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.01  E-value=1.7e-09  Score=83.65  Aligned_cols=92  Identities=12%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCC---CCeEEEEeccccc----------------------------h
Q psy14086         96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTE---EDVSIAKIDCTQH----------------------------R  143 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~---~~i~~~~vd~~~~----------------------------~  143 (324)
                      ..++++|.||++||++ |....+.++++..+++..   .++.++.|+++..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3567899999999998 999999999999998631   2577777766531                            2


Q ss_pred             hhhhhCCccccc---------------eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        144 SICQSFDIKSYP---------------TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       144 ~~~~~~~i~~~P---------------~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .+++.||+...|               ++++++. |+...++.|..+.++|.+.|.+.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478889999999               7777765 8888888899999999999998775

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.00  E-value=1.6e-09  Score=84.57  Aligned_cols=93  Identities=24%  Similarity=0.336  Sum_probs=69.4

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC--------C-ccchhhh-----------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT--------Q-ELSKDLC-----------------  277 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~--------~-~~~~~~~-----------------  277 (324)
                      .+++++|.||++||++|+ ..|.+.++..++...  ++.++.++++        . .....+.                 
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~  107 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE--GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVN  107 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG--TEEEEEEEECSCC------------------CCCSCBBCCCBSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC--CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCC
Confidence            467899999999999999 999999999765433  5788887653        0 0001111                 


Q ss_pred             -------------hhcCCCccc------eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        278 -------------NQEGVDGFP------SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       278 -------------~~~~i~~~P------~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                                   +.+++.++|      +++++ ++|+.+..+.|..+.+.|.+.|.+.+++
T Consensus       108 ~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          108 GGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             STTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred             CccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence                         246788899      77666 7888888889988999999999988764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.99  E-value=5.1e-10  Score=75.57  Aligned_cols=62  Identities=21%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-cchhhhhhCCccccceEEEEeCCeEe
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-QHRSICQSFDIKSYPTLLWIESGKKL  166 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~  166 (324)
                      +++|+++||++|+.+.+.+++++.++..  .+.++.+|.+ +...+++++|++++|++++  +|+..
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKY--TVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTE--EEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCC--eEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEE
Confidence            6889999999999999999999877644  5777777765 5678889999999999877  66543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.99  E-value=2.4e-09  Score=73.07  Aligned_cols=75  Identities=13%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhCC--ccccceEEEEeCCeEeeeecCCCC
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSFD--IKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~~--i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      ++.|+++||++|+.+.+.|++++..+++   +.+..+|++.+.    .+.+.+|  +.++|+++  .+|+.+.   |   
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~---i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~--~~g~~i~---~---   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD---FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQHIG---G---   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS---CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTEEEE---S---
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC---ceEEEEecccChHHHHHHHHHhCCCCceeCeEE--ECCEEEE---C---
Confidence            6789999999999999999999988764   899999987654    7888999  99999983  3675542   2   


Q ss_pred             HHHHHHHHHhhh
Q psy14086        175 LETLVNYVSKMK  186 (324)
Q Consensus       175 ~~~i~~fi~~~~  186 (324)
                      .++|.+++++.+
T Consensus        72 ~~~l~~~~~~~~   83 (85)
T 1ego_A           72 YTDFAAWVKENL   83 (85)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            268888887754

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.99  E-value=3.2e-09  Score=84.30  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=71.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--------c-cchhhh-h---------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--------E-LSKDLC-N---------------  278 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--------~-~~~~~~-~---------------  278 (324)
                      .+++++|.||++||++|+...|.+.++..++...  ++.++.|+++.        . ...++. +               
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~  124 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVN  124 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccC
Confidence            4678999999999999999999999999764433  58888887651        0 001111 1               


Q ss_pred             --------------hcCCCccc------eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        279 --------------QEGVDGFP------SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       279 --------------~~~i~~~P------~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                                    .+++.++|      +.+++ ++|+.+..+.|..+.+.+.+.|.+.++..
T Consensus       125 ~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~  187 (190)
T 2vup_A          125 GENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLEST  187 (190)
T ss_dssp             STTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHHCC
T ss_pred             cccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence                          13777888      66666 68888888899889999999999887654

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.99  E-value=1.6e-09  Score=81.80  Aligned_cols=87  Identities=11%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc------------------------chhhhhh
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL------------------------SKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~------------------------~~~~~~~  279 (324)
                      .+++++|.||++||++|+...|.+.++..+ +... ++.++.++.+...                        ...+.+.
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  108 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNK-FGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKK  108 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTT-SCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHH-hCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHH
Confidence            457899999999999999999999999965 4322 6888888877410                        1246678


Q ss_pred             cCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHh
Q psy14086        280 EGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       280 ~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                      |++.++|+.+++. +|+.+...   .+.+++.++|.+
T Consensus       109 ~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  142 (143)
T 4fo5_A          109 YDLRKGFKNFLINDEGVIIAAN---VTPEKLTEILKA  142 (143)
T ss_dssp             TTGGGCCCEEEECTTSBEEEES---CCHHHHHHHHTC
T ss_pred             cCCCCCCcEEEECCCCEEEEcc---CCHHHHHHHHHh
Confidence            9999999998885 67665443   356778777753

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.95  E-value=7.7e-09  Score=79.76  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             CeeEecccc--ccccccCCc-EEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------
Q psy14086        210 PVVSLTSEN--FNDVIKSGT-VFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------  271 (324)
Q Consensus       210 ~v~~l~~~~--~~~~~~~~~-~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------  271 (324)
                      .+..++++.  +.++ .++. ++|.|| ++||++|+...|.+.++..++...  ++.++.|+.+..              
T Consensus        12 ~l~~~~G~~~~l~~~-~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~   88 (161)
T 3drn_A           12 EGIADNGEKISLSDY-IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY--DVVVIGVSSDDINSHKRFKEKYKLPF   88 (161)
T ss_dssp             EEEETTSCEEEGGGT-TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT--CEEEEEEESCCHHHHHHHHHHTTCCS
T ss_pred             EeecCCCCEEEHHHh-cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence            445555544  3333 4555 999999 999999999999999999775433  588888887630              


Q ss_pred             -----cchhhhhhcCCCc----cceEEEE-ecCeeeeeecCCC----CHHHHHHHHHh
Q psy14086        272 -----LSKDLCNQEGVDG----FPSIYVY-KNGVRTAEYNGSR----DLEELYQFILK  315 (324)
Q Consensus       272 -----~~~~~~~~~~i~~----~P~l~~~-~~g~~~~~~~g~~----~~~~l~~fi~~  315 (324)
                           ....+.+.|++.+    +|+++++ ++|+.+..+.|..    ..+++.+.|++
T Consensus        89 ~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A           89 ILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             EEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             eEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence                 2467888999999    9999988 5788877888832    23455555544

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=8e-11  Score=90.78  Aligned_cols=93  Identities=19%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHH-HHHhcCCCCCeEEEEeccccchhhhhhC----------------------C--
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQE-LASHFKTEEDVSIAKIDCTQHRSICQSF----------------------D--  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~-la~~~~~~~~i~~~~vd~~~~~~~~~~~----------------------~--  150 (324)
                      ..++++|.||++||++|+...+.+.+ +...+....++.++.|+++.....+++|                      +  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            45578999999999999999999998 8888872236888888877554433333                      3  


Q ss_pred             ccccceEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        151 IKSYPTLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       151 i~~~P~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +.++|++++++ +|+...++.| .+.+++.+++++.....
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~~~  150 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQINEML  150 (159)
Confidence            56699999995 4766666666 56778888887766543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.94  E-value=5e-09  Score=82.97  Aligned_cols=108  Identities=14%  Similarity=0.191  Sum_probs=74.6

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------ccchhhh-----
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------ELSKDLC-----  277 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~~~~~~~-----  277 (324)
                      .+..++++.+. +-..+++++|.||++||++|+...|.+.++..++...  ++.++.|+++.      .....+.     
T Consensus        30 ~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~e~~~~~~~~~~~~~  107 (187)
T 3dwv_A           30 EVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPSNQFGGQEPGNEEEIKEFVCT  107 (187)
T ss_dssp             CCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG--TCEEEEEEBCCCSSCSSSBTTHHHHSCCB
T ss_pred             EEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC--CeEEEEEECcccCCCCCCCHHHHHHHHHh
Confidence            34445555432 2234678999999999999999999999999775433  57777776541      0011111     


Q ss_pred             -------------------------------hhcCCCccc---eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        278 -------------------------------NQEGVDGFP---SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       278 -------------------------------~~~~i~~~P---~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                                                     ..+++..+|   +++++ ++|+.+..+.|..+.+.|.+.|.+.++.
T Consensus       108 ~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          108 KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             CCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             ccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                                           122445677   88777 6888888899999999999999988764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=9.2e-11  Score=90.43  Aligned_cols=90  Identities=17%  Similarity=0.312  Sum_probs=64.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHH-HHHHhhcCCCCeEEEEEecCCccchhhhh----------------------hc
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEE-LGTKLLDNKHGIVIAKVDCTQELSKDLCN----------------------QE  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~-~a~~~~~~~~~~~~~~id~~~~~~~~~~~----------------------~~  280 (324)
                      .+++++|.||++||++|+...|.+.+ +..+ +....++.++.++++.  ..+..+                      .|
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~-~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLK-HKDNADFALIGIDRDE--PLEKVLAFAKSTGVTYPLGLDPGADIFAKY  108 (159)
Confidence            45789999999999999999999998 7755 3322367888887765  332222                      33


Q ss_pred             C--CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        281 G--VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       281 ~--i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +  +.++|+++++ ++|+.+..+.| .+.+++.++|.+..
T Consensus       109 ~~~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~  147 (159)
T 2ls5_A          109 ALRDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQIN  147 (159)
Confidence            3  5679999999 68887766777 45667777776543

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.47  E-value=9.4e-11  Score=88.55  Aligned_cols=88  Identities=20%  Similarity=0.446  Sum_probs=62.1

Q ss_pred             eeEecccc--ccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc---------------
Q psy14086        211 VVSLTSEN--FNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL---------------  272 (324)
Q Consensus       211 v~~l~~~~--~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~---------------  272 (324)
                      +..++++.  +.+...++ +++|.||++||++|+...|.+.+++.++.....++.++.++++...               
T Consensus         9 l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~   88 (143)
T 2lus_A            9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL   88 (143)
Confidence            33444443  33424566 8999999999999999999999998653222235777777766410               


Q ss_pred             --------chhhhhhcCCCccceEEEEe-cCeeee
Q psy14086        273 --------SKDLCNQEGVDGFPSIYVYK-NGVRTA  298 (324)
Q Consensus       273 --------~~~~~~~~~i~~~P~l~~~~-~g~~~~  298 (324)
                              ...+++.|++.++|+++++. +|+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~  123 (143)
T 2lus_A           89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLIS  123 (143)
Confidence                    13678889999999999996 676654

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.93  E-value=5.9e-09  Score=82.79  Aligned_cols=91  Identities=13%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--------c---hhhh-h----------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--------H---RSIC-Q----------------  147 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--------~---~~~~-~----------------  147 (324)
                      ..++++|.||++||++|....+.+.+++++++++ .+.++.|+++.        .   ..++ +                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            4568899999999999999999999999999763 48888887651        1   1222 1                


Q ss_pred             -------------hCCccccc------eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        148 -------------SFDIKSYP------TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       148 -------------~~~i~~~P------~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                   .+++.++|      ++++++. |+...++.|..+.+.|.+.|++.+.
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                         14777888      7777754 8888888899999999999999876

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.92  E-value=8.5e-09  Score=79.50  Aligned_cols=89  Identities=11%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             cCCC-EEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhhhCCcc
Q psy14086         96 SLGN-HFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~-~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~~~~i~  152 (324)
                      ..+. ++|.|| ++||++|....+.+.+++++++.. .+.++.|+.+                     ....+++.|++.
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK  105 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence            3455 899999 999999999999999999999763 4888887766                     456789999999


Q ss_pred             c----cceEEEEeC-CeEeeeecCCC----CHHHHHHHHHhh
Q psy14086        153 S----YPTLLWIES-GKKLDKFQGSR----TLETLVNYVSKM  185 (324)
Q Consensus       153 ~----~P~~~~~~~-g~~~~~~~g~~----~~~~i~~fi~~~  185 (324)
                      +    +|++++++. |+....+.|..    ..+++.+.|++.
T Consensus       106 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          106 GFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             CSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             CcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence            8    999999965 77777788832    344555555544

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.91  E-value=4.3e-09  Score=81.81  Aligned_cols=94  Identities=21%  Similarity=0.263  Sum_probs=70.2

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------ccc---hhhhh-hc-------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------ELS---KDLCN-QE-------------  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~~~---~~~~~-~~-------------  280 (324)
                      .+++++|.||++||++|+...|.++++..++...  ++.++.++++.      ...   .++.+ .+             
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  108 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ--GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVN  108 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC--CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccC
Confidence            4678999999999999999999999999764433  58888887641      001   11222 22             


Q ss_pred             ----------------CC--Cccc---eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        281 ----------------GV--DGFP---SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       281 ----------------~i--~~~P---~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                                      ++  .++|   +.+++ ++|+.+..+.|..+.+.|.+.|.+.+++
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (170)
T 2p5q_A          109 GENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI  169 (170)
T ss_dssp             STTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred             CCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence                            34  5678   77777 6888888889988999999999988764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.90  E-value=9e-09  Score=79.89  Aligned_cols=94  Identities=18%  Similarity=0.253  Sum_probs=68.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----c----cchhh-hhhc-------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----E----LSKDL-CNQE-------------  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~----~~~~~-~~~~-------------  280 (324)
                      .+++++|.||++||++|+...|.++++..++...  ++.++.++++.     .    ....+ .+.+             
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  107 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK--GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVN  107 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC--CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeec
Confidence            4678999999999999999999999999765433  58888887642     0    00111 1111             


Q ss_pred             ----------------C-----CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        281 ----------------G-----VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       281 ----------------~-----i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                                      +     +..+|+++++ ++|+.+..+.|..+.+.|.+.|.+.+++
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          108 GSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             STTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             CccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                            3     3345777777 6888888889988899999999887753

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.43  E-value=1.5e-10  Score=87.46  Aligned_cols=72  Identities=17%  Similarity=0.409  Sum_probs=58.2

Q ss_pred             cCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccc-------------------------hhhhhh
Q psy14086         96 SLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQH-------------------------RSICQS  148 (324)
Q Consensus        96 ~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~-------------------------~~~~~~  148 (324)
                      .++ +++|.||++||++|+.+.|.+.+++++++.. .++.++.|+++..                         ..+++.
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            455 7899999999999999999999999998432 2577777777644                         368899


Q ss_pred             CCccccceEEEEeC-CeEee
Q psy14086        149 FDIKSYPTLLWIES-GKKLD  167 (324)
Q Consensus       149 ~~i~~~P~~~~~~~-g~~~~  167 (324)
                      |+|.++|++++++. |+...
T Consensus       104 ~~v~~~P~~~lid~~G~i~~  123 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLIS  123 (143)
Confidence            99999999999984 65443

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.3e-09  Score=82.74  Aligned_cols=90  Identities=14%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------cchhhh------------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------QHRSIC------------------  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------~~~~~~------------------  146 (324)
                      ..++++|.||++||++|+ ..|.+.++++++++. .+.++.|+++           ....++                  
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            456789999999999999 999999999999763 4888888652           111122                  


Q ss_pred             ------------hhCCccccc------eEEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        147 ------------QSFDIKSYP------TLLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       147 ------------~~~~i~~~P------~~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                  +.|++.++|      ++++++ +|+...++.|..+.+.|.+.|++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                        246788899      777775 48888888898899999999998875

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.88  E-value=5.2e-09  Score=71.32  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=59.0

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcC--CCccceEEEEecCeeeeeecCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEG--VDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~--i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      ++.|+++||++|+.+.+.+++++.+ +.   ++.+..+|++..  ...++.+.++  +.++|++  |.+|+.+.   |  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~---~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~--   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNE-RD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---G--   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHH-HS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---S--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhc-CC---CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---C--
Confidence            6789999999999999999999855 32   488889998651  0137888898  8999998  45776542   3  


Q ss_pred             CHHHHHHHHHhhc
Q psy14086        305 DLEELYQFILKHK  317 (324)
Q Consensus       305 ~~~~l~~fi~~~~  317 (324)
                       .+++.+++.+.+
T Consensus        72 -~~~l~~~~~~~~   83 (85)
T 1ego_A           72 -YTDFAAWVKENL   83 (85)
T ss_dssp             -SHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc
Confidence             368888887754

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.88  E-value=4.3e-09  Score=81.98  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=69.8

Q ss_pred             cCCcEEEEEeCCCChh-hhhhhHhHHHHHHHhhcCC--CCeEEEEEecCCcc-c-------------------------h
Q psy14086        224 KSGTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDNK--HGIVIAKVDCTQEL-S-------------------------K  274 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~-C~~~~~~~~~~a~~~~~~~--~~~~~~~id~~~~~-~-------------------------~  274 (324)
                      .+++++|.||++||++ |+...|.+.++..+ +...  .++.++.++++... .                         .
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~-~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~  112 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEK-LPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVR  112 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTT-SCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHH-hhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHH
Confidence            4578999999999997 99999999999855 4421  25888888876410 1                         2


Q ss_pred             hhhhhcC---------------CCccceEEEEecCeeeeeecCCC--CHHHHHHHHHhh
Q psy14086        275 DLCNQEG---------------VDGFPSIYVYKNGVRTAEYNGSR--DLEELYQFILKH  316 (324)
Q Consensus       275 ~~~~~~~---------------i~~~P~l~~~~~g~~~~~~~g~~--~~~~l~~fi~~~  316 (324)
                      .+.+.|+               +..+|+++++.+|+.+..+.|..  +.++|.+.|++.
T Consensus       113 ~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          113 EAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            3444555               45789999999777777888877  889999998865

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.87  E-value=7.4e-09  Score=82.58  Aligned_cols=91  Identities=10%  Similarity=0.184  Sum_probs=74.5

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------------------------chhhhhhCC
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------------------------HRSICQSFD  150 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------------------------~~~~~~~~~  150 (324)
                      .++++|.|| ++||++|....+.+.+++.+++.. ++.++.|+.+.                         ...+++.|+
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            457899999 999999999999999999999753 57777777653                         346788899


Q ss_pred             cc-----ccceEEEEeC-CeEeeeecCCC----CHHHHHHHHHhhhCC
Q psy14086        151 IK-----SYPTLLWIES-GKKLDKFQGSR----TLETLVNYVSKMKGP  188 (324)
Q Consensus       151 i~-----~~P~~~~~~~-g~~~~~~~g~~----~~~~i~~fi~~~~~~  188 (324)
                      +.     .+|++++++. |+...++.|..    +.++|.+.|++...+
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~  171 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSD  171 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC-
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhC
Confidence            99     9999999964 77777777754    789999999998763

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.86  E-value=2.1e-09  Score=72.50  Aligned_cols=64  Identities=13%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeee
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      -++.|+++||++|+.+.+.+++++.+ +..  .+.+..+|.+. +..++.+++|+.++|++++  +|+.+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~-~~~--~~~~~~v~~~~-~~~~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDP-SKY--TVEIVHLGTDK-ARIAEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCT-TTE--EEEEEETTTCS-STHHHHHHHTCCEEEEEEE--TTEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHh-cCC--eEEEEEecCCh-hhHHHHHHcCCCcCCEEEE--CCEEE
Confidence            36789999999999999999988743 211  34444444431 2577889999999999976  77643

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.86  E-value=6.7e-09  Score=80.71  Aligned_cols=91  Identities=15%  Similarity=0.261  Sum_probs=70.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--------c---hhhhh-hC--------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--------H---RSICQ-SF--------------  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--------~---~~~~~-~~--------------  149 (324)
                      ..++++|.||++||++|....|.+.+++++++++ .+.++.|+++.        .   ..+++ ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            4567899999999999999999999999999763 48888887641        1   22233 32              


Q ss_pred             ---------------Cc--cccc---eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        150 ---------------DI--KSYP---TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       150 ---------------~i--~~~P---~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                     ++  ..+|   ++++++. |+...++.|..+.++|.+.|++.+.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                           34  5678   7888854 8888888999899999999998875

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.85  E-value=7.6e-09  Score=80.30  Aligned_cols=91  Identities=12%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhh-hhhC--------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSI-CQSF--------------  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~-~~~~--------------  149 (324)
                      ..++++|.||++||++|....|.+++++++++++ .+.++.|+++.           -..+ .+++              
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK-GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC-CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            3567899999999999999999999999999762 48888887642           0122 1221              


Q ss_pred             ---------------C-----ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        150 ---------------D-----IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       150 ---------------~-----i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                     |     ++.+|++++++. |+...++.|..+.++|.+.|++.+.
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence                           3     344588888865 7887888898889999999988765

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.84  E-value=5.5e-09  Score=83.53  Aligned_cols=90  Identities=10%  Similarity=0.217  Sum_probs=73.6

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..++++|.|| ++||++|....|.+.+++++++.. ++.++.|+.+.                            ...++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            4567899999 999999999999999999998752 57777777653                            35688


Q ss_pred             hhCCcc-----ccceEEEEeC-CeEeeeecCCC----CHHHHHHHHHhhh
Q psy14086        147 QSFDIK-----SYPTLLWIES-GKKLDKFQGSR----TLETLVNYVSKMK  186 (324)
Q Consensus       147 ~~~~i~-----~~P~~~~~~~-g~~~~~~~g~~----~~~~i~~fi~~~~  186 (324)
                      +.|++.     ++|++++++. |+...++.|..    +.++|.+.|++..
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            899999     9999999975 77777777754    6889999998876

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.84  E-value=8.9e-09  Score=81.07  Aligned_cols=90  Identities=13%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------c----hhhhhh----------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------H----RSICQS----------------  148 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------~----~~~~~~----------------  148 (324)
                      ..++++|.||++||++|....|.+++++++++++ .+.++.|+++.       .    ..++++                
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH-HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            3557899999999999999999999999999762 48888887642       1    122222                


Q ss_pred             --------CCccccc-------eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        149 --------FDIKSYP-------TLLWIES-GKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       149 --------~~i~~~P-------~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                              |++..+|       +.++++. |+...++.|..+.++|.+.|++.+
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                    2244678       7777754 888888899999999999998765

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.84  E-value=6.4e-08  Score=73.15  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=85.6

Q ss_pred             CceEcChhhHHHHhcCCCE--EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc--ccchhhhhhCCccc--cc
Q psy14086         82 GLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC--TQHRSICQSFDIKS--YP  155 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~~--~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~--~P  155 (324)
                      .|.++|.++...+...+..  ++.|.......-+.+.+.++++|+.+++  ++.|+.+|.  ..+..+++.||++.  .|
T Consensus        15 LV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg--ki~Fv~vd~~~~~~~~~l~~fGl~~~~~P   92 (147)
T 3bj5_A           15 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFAFIDSDHTDNQRILEFFGLKKEECP   92 (147)
T ss_dssp             CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT--TCEEEEECTTCGGGHHHHHHTTCCGGGCS
T ss_pred             eeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC--ceEEEEEecchHhHHHHHHHcCCCcccCC
Confidence            6899999999888866643  3334443444467789999999999998  899999998  66667899999995  89


Q ss_pred             eEEEEeC---CeEeeeec-CCCCHHHHHHHHHhhhCCCCCCC
Q psy14086        156 TLLWIES---GKKLDKFQ-GSRTLETLVNYVSKMKGPLNKKA  193 (324)
Q Consensus       156 ~~~~~~~---g~~~~~~~-g~~~~~~i~~fi~~~~~~~~~~~  193 (324)
                      +++++..   +..+ .+. +.++.+.|.+|+++++.|+.++.
T Consensus        93 ~v~i~~~~~~~~Ky-~~~~~~~t~~~i~~Fv~d~l~GkL~p~  133 (147)
T 3bj5_A           93 AVRLITLEEEMTKY-KPESEELTAERITEFCHRFLEGKIKPH  133 (147)
T ss_dssp             EEEEEECSSSCEEE-CCSCCCCCHHHHHHHHHHHHTTCSCEE
T ss_pred             EEEEEecccccccC-CCCcccCCHHHHHHHHHHHHcCCcccc
Confidence            9999875   3332 233 78999999999999999986544

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.84  E-value=1.2e-08  Score=80.69  Aligned_cols=92  Identities=14%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc--------chhh---h------------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ--------HRSI---C------------------  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~--------~~~~---~------------------  146 (324)
                      ..++++|.||++||++|....|.+.+++++++++ .+.++.|+++.        ...+   +                  
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  123 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCC
Confidence            4568899999999999999999999999999863 47777776541        1111   1                  


Q ss_pred             ---------------hhCCccccc---eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCC
Q psy14086        147 ---------------QSFDIKSYP---TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGP  188 (324)
Q Consensus       147 ---------------~~~~i~~~P---~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~  188 (324)
                                     ..+++..+|   ++++++. |+...++.|..+.++|.+.|++.+.+
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          124 ENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             C-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             cchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                           112344567   8888865 87778889999999999999998863

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.84  E-value=6.7e-09  Score=82.21  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=73.9

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------------------------chhhhhhC
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------------------------HRSICQSF  149 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------------------------~~~~~~~~  149 (324)
                      ..++++|.|| ++||++|....+.+.+++.+++.. ++.++.|+.+.                         ...+++.|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            3567899999 999999999999999999999752 47777776653                         35688899


Q ss_pred             Ccc------ccceEEEEeC-CeEeeeecCCC----CHHHHHHHHHhhhC
Q psy14086        150 DIK------SYPTLLWIES-GKKLDKFQGSR----TLETLVNYVSKMKG  187 (324)
Q Consensus       150 ~i~------~~P~~~~~~~-g~~~~~~~g~~----~~~~i~~fi~~~~~  187 (324)
                      ++.      .+|++++++. |+...++.|..    +.++|.+.|++...
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            998      8999999964 77777777753    68889999988765

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.83  E-value=2.1e-08  Score=77.06  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=67.5

Q ss_pred             CEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCcc--
Q psy14086         99 NHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDIK--  152 (324)
Q Consensus        99 ~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i~--  152 (324)
                      +++|.|| ++||++|....+.+.+++++++.. ++.++.|+++.                       ...+++.|++.  
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~  116 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  116 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence            6899998 999999999999999999999753 58888777653                       56788999998  


Q ss_pred             --ccc--eEEEEeC-CeEeeeecCCC----CHHHHHHHHHh
Q psy14086        153 --SYP--TLLWIES-GKKLDKFQGSR----TLETLVNYVSK  184 (324)
Q Consensus       153 --~~P--~~~~~~~-g~~~~~~~g~~----~~~~i~~fi~~  184 (324)
                        ++|  ++++++. |+...++.|..    ..+++.+.|.+
T Consensus       117 ~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          117 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             cCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence              899  7777754 77777777764    45666666654

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.83  E-value=2.1e-08  Score=80.11  Aligned_cols=97  Identities=11%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------  271 (324)
                      +.++..+++++|.|| ++||++|+...|.+.++..++...  ++.++.|+.+..                          
T Consensus        27 l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d  104 (198)
T 1zof_A           27 LSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD  104 (198)
T ss_dssp             TTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEEC
T ss_pred             HHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEEC
Confidence            344435678999999 999999999999999998765443  577888876530                          


Q ss_pred             cchhhhhhcCCC-----ccceEEEE-ecCeeeeeecCCC----CHHHHHHHHHhhc
Q psy14086        272 LSKDLCNQEGVD-----GFPSIYVY-KNGVRTAEYNGSR----DLEELYQFILKHK  317 (324)
Q Consensus       272 ~~~~~~~~~~i~-----~~P~l~~~-~~g~~~~~~~g~~----~~~~l~~fi~~~~  317 (324)
                      ....+.+.|++.     .+|+++++ ++|+.+..+.|..    +.+++.+.|++..
T Consensus       105 ~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          105 ITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             TTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            134677889998     99999988 5788777777754    6788998888654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.83  E-value=2.7e-08  Score=78.68  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~  279 (324)
                      .+++++|.|| ++||++|....|.+.+++.++...  ++.++.++.+..                       ....+.+.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  107 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQ  107 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHH
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHH
Confidence            4578999999 999999999999999999765443  577888877641                       13467788


Q ss_pred             cCCC------ccceEEEE-ecCeeeeeecCCC----CHHHHHHHHHhhcc
Q psy14086        280 EGVD------GFPSIYVY-KNGVRTAEYNGSR----DLEELYQFILKHKV  318 (324)
Q Consensus       280 ~~i~------~~P~l~~~-~~g~~~~~~~g~~----~~~~l~~fi~~~~~  318 (324)
                      |++.      .+|+++++ ++|+.+..+.|..    +.+++.+.|++...
T Consensus       108 ~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          108 FDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             hCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            9998      89999999 6888877777753    67889988887643

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.83  E-value=9.4e-09  Score=80.93  Aligned_cols=92  Identities=13%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhh---------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQ---------------  279 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~---------------  279 (324)
                      .+++++|.||++||++|+...|.+++++.++...  ++.++.++++.         ....++.++               
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~  125 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH--HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT  125 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccC
Confidence            4678999999999999999999999999775433  58888887642         001112222               


Q ss_pred             ---------cCCCccc-------eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        280 ---------EGVDGFP-------SIYVY-KNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       280 ---------~~i~~~P-------~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                               +.+.++|       +.+++ ++|+.+..+.|..+.++|.+.|++.+
T Consensus       126 g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          126 GTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             STTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             CccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                     2244678       66555 68888888899889999999998765

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.80  E-value=1.3e-08  Score=80.99  Aligned_cols=114  Identities=12%  Similarity=0.251  Sum_probs=65.8

Q ss_pred             chhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEeccccccc
Q psy14086        142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSLTSENFND  221 (324)
Q Consensus       142 ~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  221 (324)
                      +...++.+||+++|++++  +|+..... +..+.+++.+|+.+++. ..+...+.+    .+.  ....  ...++++..
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~-~~~~~~~~~~f~~~~~~-l~~~L~s~~----~p~--~~~~--~~~g~~y~~  106 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQLNP-QGMDTSNMDVFVQQYAD-TVKYLSEKK----GGG--TGAQ--YEDGKQYTT  106 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECG-GGSCCSSHHHHHHHHHH-HHHHHTC-----------------CCBTTTEEE
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEecCc-cccccccHHHHHHHHHH-HHHHHHhCc----ccc--cccc--cCCCCCceE
Confidence            445778899999999876  56543221 22333334444333322 000000000    000  0011  123445554


Q ss_pred             cc---cCCcEEEEEeCCCChhhhhhhHhH---HHHHHHhhcCCCCeEEEEEecCC
Q psy14086        222 VI---KSGTVFIKFFAPWCGHCKRLAPTW---EELGTKLLDNKHGIVIAKVDCTQ  270 (324)
Q Consensus       222 ~~---~~~~~~v~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~~id~~~  270 (324)
                      +.   ..++++|.||+.||++|+.+.|.+   ++++.+ +..  ++.|..++++.
T Consensus       107 l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~-~~~--~v~~~~~~v~~  158 (197)
T 1un2_A          107 LEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKK-LPE--GVKMTKYHVNF  158 (197)
T ss_dssp             CSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTS-SCT--TCCEEEEECSS
T ss_pred             ccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHH-CCC--CCEEEEeccCc
Confidence            43   245799999999999999999999   998844 444  68999999876

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.80  E-value=2.7e-08  Score=76.45  Aligned_cols=90  Identities=13%  Similarity=0.219  Sum_probs=67.1

Q ss_pred             cCC-cEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhc
Q psy14086        224 KSG-TVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQE  280 (324)
Q Consensus       224 ~~~-~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~  280 (324)
                      .++ +++|.|| ++||++|+...|.+.++..+ +.. .++.++.++.+..                     ....+.+.|
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~-~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPE-FEN-DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAY  111 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGG-TSS-SSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHT
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHH-HHH-CCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHc
Confidence            355 8999998 99999999999999999865 432 2688888887641                     045678889


Q ss_pred             CCC----ccc--eEEEE-ecCeeeeeecCCC----CHHHHHHHHHh
Q psy14086        281 GVD----GFP--SIYVY-KNGVRTAEYNGSR----DLEELYQFILK  315 (324)
Q Consensus       281 ~i~----~~P--~l~~~-~~g~~~~~~~g~~----~~~~l~~fi~~  315 (324)
                      ++.    ++|  +++++ ++|+.+..+.|..    ..+++.+.|.+
T Consensus       112 ~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          112 GVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            998    999  66666 6888877777764    35666666654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.79  E-value=2.7e-08  Score=79.24  Aligned_cols=92  Identities=13%  Similarity=0.185  Sum_probs=72.6

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~  279 (324)
                      .+++++|.|| ++||++|+...|.+.++..++...  ++.++.|+.+..                       ....+.+.
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  121 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA  121 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHH
Confidence            3568999999 999999999999999998665433  588888877631                       13467788


Q ss_pred             cCCC-----ccceEEEE-ecCeeeeeecCCC----CHHHHHHHHHhhc
Q psy14086        280 EGVD-----GFPSIYVY-KNGVRTAEYNGSR----DLEELYQFILKHK  317 (324)
Q Consensus       280 ~~i~-----~~P~l~~~-~~g~~~~~~~g~~----~~~~l~~fi~~~~  317 (324)
                      |++.     .+|+++++ ++|+.+..+.|..    +.+++.+.|++..
T Consensus       122 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          122 AGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             HTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             hCCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            9999     99999999 5788777777754    6889999988764

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.79  E-value=1.8e-08  Score=81.12  Aligned_cols=91  Identities=9%  Similarity=0.099  Sum_probs=68.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----c---c---hhhhh------hCC--------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----Q---H---RSICQ------SFD--------  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----~---~---~~~~~------~~~--------  150 (324)
                      ..++++|.||++||++|+...|.|++++++++++ .+.++.|+++     +   .   ..+++      +++        
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d  124 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK  124 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEE
Confidence            3557899999999999999999999999999763 4888888764     1   1   12222      333        


Q ss_pred             ---------------------------------------------ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHh
Q psy14086        151 ---------------------------------------------IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       151 ---------------------------------------------i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                                                                   |...|+.++++. |+...+|.|..+.++|.+.|++
T Consensus       125 ~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~  204 (208)
T 2f8a_A          125 CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA  204 (208)
T ss_dssp             CCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHH
T ss_pred             eecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHH
Confidence                                                         333487777765 8888889999899999999988


Q ss_pred             hhC
Q psy14086        185 MKG  187 (324)
Q Consensus       185 ~~~  187 (324)
                      .+.
T Consensus       205 ll~  207 (208)
T 2f8a_A          205 LLS  207 (208)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            764

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.76  E-value=1.6e-08  Score=79.64  Aligned_cols=89  Identities=15%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhhhhC---------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSICQSF---------------  149 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~~~~---------------  149 (324)
                      ..++++|.||++||++|....+.+.+++++++++ .+.++.|+++.           -..+++++               
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC-CeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            3557899999999999999999999999999762 48888887541           01111211               


Q ss_pred             ----------------C-----ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086        150 ----------------D-----IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       150 ----------------~-----i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                                      +     ++..|++++++. |+...++.|..+.++|.+.|+++
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                            3     334599888865 77778888988888888877654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.76  E-value=2.6e-08  Score=78.30  Aligned_cols=106  Identities=15%  Similarity=0.154  Sum_probs=68.1

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------ccchhhhhh
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------ELSKDLCNQ  279 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------~~~~~~~~~  279 (324)
                      .+..++++.+. +-..+++++|.||++||++|+...|.+.++..++...  ++.++.++++.         .....+.++
T Consensus        22 ~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           22 EVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS--HFSVLAFPCNQFGESEPRPSKEVESFARK   99 (180)
T ss_dssp             EEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT--SEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             EEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC--CeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence            34444554432 2234678999999999999999999999999664333  57888887542         011233344


Q ss_pred             -cCCC--------------------------ccce----EEEE-ecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        280 -EGVD--------------------------GFPS----IYVY-KNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       280 -~~i~--------------------------~~P~----l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                       ++++                          ++|+    .+++ ++|+.+..+.|..+.+.+.+.|.+.+
T Consensus       100 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A          100 NYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             HHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             hcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence             3321                          2565    4444 78888888888877766555555443

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.76  E-value=3e-08  Score=78.12  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------c---cchhhhhh-
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------E---LSKDLCNQ-  279 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------~---~~~~~~~~-  279 (324)
                      +..++++.+. +-..+++++|.||++||++|+...|.+.++..++...  ++.++.++++.      .   ....+.+. 
T Consensus        32 l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~  109 (183)
T 2obi_A           32 AKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNEEIKEFAAGY  109 (183)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHHHHHHTT
T ss_pred             EEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC--CeEEEEEECCCCCCCCCCCHHHHHHHHHHc
Confidence            4444444422 1124678999999999999999999999999765433  58888887641      0   00011111 


Q ss_pred             --------------------c----------C-----CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        280 --------------------E----------G-----VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       280 --------------------~----------~-----i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                                          |          +     +..+|+++++ ++|+.+..+.|..+.++|.+.|++.
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          110 NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                                1          3     3335998888 6888888889988888888877654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.72  E-value=3.7e-08  Score=77.37  Aligned_cols=91  Identities=14%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhhhh-CCcc-----------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSICQS-FDIK-----------  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~~~-~~i~-----------  152 (324)
                      ..++++|.||++||++|....|.+.+++++++++ .+.++.|.++.           -..++++ +++.           
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS-HFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILG  115 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT-SEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC-CeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccC
Confidence            4557899999999999999999999999999863 48888876532           1334444 4332           


Q ss_pred             ---------------ccce----EEEEe-CCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 ---------------SYPT----LLWIE-SGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ---------------~~P~----~~~~~-~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                     ..|+    .++++ +|+...++.|..+.+.|.+.|.+.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A          116 SEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             TTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred             ccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                           1565    55665 48888888898888777777766654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.71  E-value=4e-08  Score=77.58  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----c----cchhhhhhc--------------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----E----LSKDLCNQE--------------  280 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~----~~~~~~~~~--------------  280 (324)
                      .+++++|.||++||++|+...|.++++..++...  ++.++.++++.     .    ...++++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  125 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNG  125 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC--CeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCC
Confidence            4578999999999999999999999999765433  58888887641     0    001111221              


Q ss_pred             -----------------CCC-----ccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        281 -----------------GVD-----GFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       281 -----------------~i~-----~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                                       ++.     .+|+.+++ ++|+.+..+.|..+.++|.+.|++.
T Consensus       126 ~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          126 DDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             TTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                             222     25788887 6788888888988888888887764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.68  E-value=1.2e-07  Score=75.21  Aligned_cols=97  Identities=14%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------  271 (324)
                      +.++..+++++|.|| +.||++|....|.+.+++.++...  ++.++.|+.+..                          
T Consensus        25 l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D  102 (192)
T 2h01_A           25 LSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISD  102 (192)
T ss_dssp             GGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEEC
T ss_pred             HHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEEC
Confidence            444435678999999 999999999999999998765433  577887776531                          


Q ss_pred             cchhhhhhcCCC-----ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHhhc
Q psy14086        272 LSKDLCNQEGVD-----GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILKHK  317 (324)
Q Consensus       272 ~~~~~~~~~~i~-----~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~~~  317 (324)
                      ....+.+.|++.     .+|+++++ ++|+.+..+.|.    .+.+++.+.|++..
T Consensus       103 ~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          103 ISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             TTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            024577889998     89999999 578776666663    35788888887653

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.68  E-value=8.4e-08  Score=77.16  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----cc-chhh---hh------hcC-------
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----EL-SKDL---CN------QEG-------  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~~-~~~~---~~------~~~-------  281 (324)
                      .+++++|.||++||++|+...|.++++..++...  ++.++.|+++.     .. ...+   ++      +++       
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~--g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~  123 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE  123 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC--CeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEE
Confidence            4678999999999999999999999999765433  58888887751     00 1111   11      222       


Q ss_pred             ----------------------------------------------CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHH
Q psy14086        282 ----------------------------------------------VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       282 ----------------------------------------------i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~  314 (324)
                                                                    +...|+.+++ ++|+.+..+.|..+.++|.+.|+
T Consensus       124 d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~  203 (208)
T 2f8a_A          124 KCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE  203 (208)
T ss_dssp             CCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHH
T ss_pred             EeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHH
Confidence                                                          2234777666 68888888999888899999888


Q ss_pred             hhcc
Q psy14086        315 KHKV  318 (324)
Q Consensus       315 ~~~~  318 (324)
                      +.++
T Consensus       204 ~ll~  207 (208)
T 2f8a_A          204 ALLS  207 (208)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            7753

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.67  E-value=1.2e-07  Score=74.07  Aligned_cols=80  Identities=16%  Similarity=0.237  Sum_probs=63.4

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------------------------  139 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------------------------  139 (324)
                      ..++.|+.+||++|+.+.+.+.++.+++..   +.+...+.                                       
T Consensus        24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~  100 (175)
T 3gyk_A           24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPN---VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANE  100 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTT---EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSH
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHhCCC---EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCH
Confidence            358999999999999999999999988653   55554442                                       


Q ss_pred             ------------------------------ccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        140 ------------------------------TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       140 ------------------------------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                                                    ..+..+++.+||+++|++++  +|+   .+.|..+.+.|.+.|.+.+
T Consensus       101 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          101 TGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                          23345677899999999987  563   4679999999999998765

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.67  E-value=6.1e-08  Score=77.66  Aligned_cols=89  Identities=12%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~~  147 (324)
                      .++++|.|| ++||++|....+.+.+++++|+.. ++.|+.|+++.                            ...+++
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            457799999 999999999999999999999652 58888777653                            346788


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~  186 (324)
                      .|++.      .+|++++++. |+...++.|.    .+.++|.+.|+.+.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            89999      9999999965 7666665553    46789999988775

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.67  E-value=1.6e-07  Score=68.60  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             CCeeEecc-ccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTS-ENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..+..|+. +.+++++.+ +.++|-|+.+||++|   .+.|.++|.. + .  .+.|+.++     +.++.++++++ .|
T Consensus        21 ~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~-~-~--d~~F~~t~-----~~~v~~~~~v~-~~   87 (124)
T 2l4c_A           21 QEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQK-F-P--GVSFGIST-----DSEVLTHYNIT-GN   87 (124)
T ss_dssp             CCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHH-C-T--TSEEEEEC-----CHHHHHHTTCC-SS
T ss_pred             CcceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHh-C-C--CceEEEEC-----hHHHHHHcCCC-CC
Confidence            34555654 558888864 578999999999987   6788999965 4 3  58999876     67889999998 89


Q ss_pred             eEEEEecC-eeeeeecC----CCCHHHHHHHHHhh
Q psy14086        287 SIYVYKNG-VRTAEYNG----SRDLEELYQFILKH  316 (324)
Q Consensus       287 ~l~~~~~g-~~~~~~~g----~~~~~~l~~fi~~~  316 (324)
                      ++++|+.+ .....|.|    ..+.++|.+||..+
T Consensus        88 ~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           88 TICLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             CEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            99999875 35557886    68999999999875

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.66  E-value=4.7e-08  Score=77.16  Aligned_cols=89  Identities=13%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhhhhCC--------------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSICQSFD--------------  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~~~~~--------------  150 (324)
                      ..++++|.||++||++|....|.+++++++++++ .+.++.|+++.           -..++++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  126 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  126 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC-CeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCCh
Confidence            3557899999999999999999999999999763 48888886542           122333322              


Q ss_pred             ----------------------ccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhh
Q psy14086        151 ----------------------IKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       151 ----------------------i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                                            ++..|+.++++. |+...++.|..+.++|.+.|++.
T Consensus       127 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          127 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             TBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                  222578888865 77777888988888888887764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.66  E-value=1.4e-07  Score=73.41  Aligned_cols=92  Identities=15%  Similarity=0.319  Sum_probs=68.5

Q ss_pred             cCCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcCCCC-CeEEEEecccc---c----hhhh--------------------
Q psy14086         96 SLGNHFVKFYAPWCG-HCQSLAPVWQELASHFKTEE-DVSIAKIDCTQ---H----RSIC--------------------  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~~-~i~~~~vd~~~---~----~~~~--------------------  146 (324)
                      ..++++|.||++||+ +|....+.+.++.++++... ++.++.|+++.   .    ..++                    
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            456789999999999 99999999999999987532 47777777641   1    1111                    


Q ss_pred             -hh----------------CCccccceEEEEeC-CeEeeeecCCC--CHHHHHHHHHhhhC
Q psy14086        147 -QS----------------FDIKSYPTLLWIES-GKKLDKFQGSR--TLETLVNYVSKMKG  187 (324)
Q Consensus       147 -~~----------------~~i~~~P~~~~~~~-g~~~~~~~g~~--~~~~i~~fi~~~~~  187 (324)
                       +.                +++...|++++++. |+...++.|..  +.++|.+.|++++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence             11                23456788888865 77777788875  58999999998875

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.65  E-value=5.5e-08  Score=78.77  Aligned_cols=83  Identities=25%  Similarity=0.392  Sum_probs=60.9

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC-----------------------------------
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT-----------------------------------  269 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~-----------------------------------  269 (324)
                      .+.+++.|+++||++|+.+.|.+++++..      ++.+..+...                                   
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC------CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            35689999999999999999999998732      2444333221                                   


Q ss_pred             -----C--ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        270 -----Q--ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       270 -----~--~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                           .  ..+..+...+||+++|++ ++.+|.   .+.|..+.+.|.++|.+..
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence                 0  113456788999999999 456674   4578889999999998764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.65  E-value=3.8e-07  Score=70.93  Aligned_cols=95  Identities=18%  Similarity=0.283  Sum_probs=68.1

Q ss_pred             cCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----c---------------------chhh
Q psy14086        224 KSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----L---------------------SKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----~---------------------~~~~  276 (324)
                      .+++++|.||++||+ +|....+.+.++..++.....++.++.|+.+..     .                     ...+
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            467899999999999 999999999999866543322478888877520     0                     0111


Q ss_pred             hhh----------------cCCCccceEEEE-ecCeeeeeecCCC--CHHHHHHHHHhhcc
Q psy14086        277 CNQ----------------EGVDGFPSIYVY-KNGVRTAEYNGSR--DLEELYQFILKHKV  318 (324)
Q Consensus       277 ~~~----------------~~i~~~P~l~~~-~~g~~~~~~~g~~--~~~~l~~fi~~~~~  318 (324)
                      .+.                +++...|+++++ ++|+.+..+.|..  +.++|.+.|++.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            111                235568887777 6788887888875  57899999988765

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.65  E-value=2e-07  Score=74.46  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=70.2

Q ss_pred             CeeEecccc--ccccccCCcEEEEEeCCCChh-hhhhhHhHHHHHHHhhcC-CCCeEEEEEecCCc--------------
Q psy14086        210 PVVSLTSEN--FNDVIKSGTVFIKFFAPWCGH-CKRLAPTWEELGTKLLDN-KHGIVIAKVDCTQE--------------  271 (324)
Q Consensus       210 ~v~~l~~~~--~~~~~~~~~~~v~f~~~~c~~-C~~~~~~~~~~a~~~~~~-~~~~~~~~id~~~~--------------  271 (324)
                      .+...+++.  +.+ ..+++++|.||++||++ |....|.+.++..++... ..++.++.|+.+..              
T Consensus        25 ~l~d~~G~~v~l~~-~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~  103 (200)
T 2b7k_A           25 HLEDMYGNEFTEKN-LLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDF  103 (200)
T ss_dssp             EEEETTSCEEEGGG-GTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTS
T ss_pred             EEEcCCCCEEeHHH-cCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHc
Confidence            344445544  333 34678999999999998 999999999987554321 22577777776520              


Q ss_pred             ------------cchhhhhhcCCC-ccc---------------eEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        272 ------------LSKDLCNQEGVD-GFP---------------SIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       272 ------------~~~~~~~~~~i~-~~P---------------~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                  ....+.+.|++. +.|               +++++ ++|+.+..+.|..+.+.+.+.|.+.+.
T Consensus       104 ~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          104 HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVK  179 (200)
T ss_dssp             CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHH
T ss_pred             CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                        012456778886 444               55555 688888788887777777777766554

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.64  E-value=7.1e-08  Score=78.11  Aligned_cols=80  Identities=11%  Similarity=0.331  Sum_probs=60.5

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec---------------------------------------
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID---------------------------------------  138 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd---------------------------------------  138 (324)
                      +..++.||++||++|+.+.+.++++.+.     ++.+..+.                                       
T Consensus        87 k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           87 KHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            3568999999999999999999998763     23333221                                       


Q ss_pred             -----cccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        139 -----CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       139 -----~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                           .+.+..+++++||+++|+++ +.+|.   .+.|..+.++|.++|.+..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~v-~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAVV-LSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEE-CTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEEE-EcCCe---EecCCCCHHHHHHHHHHhh
Confidence                 12345688899999999984 55563   4679899999999998764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.63  E-value=1.2e-07  Score=76.59  Aligned_cols=90  Identities=13%  Similarity=0.286  Sum_probs=70.6

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..++++|.|| ++||++|....+.+.+++++|+.. ++.++.|+.+.                            ...++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER-NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            4567899999 999999999999999999999632 57777776542                            34578


Q ss_pred             hhCCcc-----ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhh
Q psy14086        147 QSFDIK-----SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMK  186 (324)
Q Consensus       147 ~~~~i~-----~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~  186 (324)
                      +.||+.     .+|++++++. |+....+.|.    .+.+++.+.|+...
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            889998     8999999975 6666555553    45889999988765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.63  E-value=1.1e-07  Score=77.10  Aligned_cols=90  Identities=14%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~~  147 (324)
                      .++++|.|| ++||++|....+.+.+++.+|+.. ++.++.|+++.                            ...+++
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            467899999 999999999999999999999642 57777776542                            246888


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhhC
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMKG  187 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~~  187 (324)
                      .||+.      .+|++++++. |+...++.|.    .+.+++.+.|+.+..
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence            99998      8999999965 7666555554    567899999988764

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.62  E-value=6.3e-07  Score=65.40  Aligned_cols=94  Identities=11%  Similarity=0.146  Sum_probs=76.1

Q ss_pred             CceEc-ChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVEL-TEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      ....| +.+.+++++... .++|.|+.+||++|   .+.|.++|+.+ .  .+.|+.++   +..+++++++. .|++++
T Consensus        22 ~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~--d~~F~~t~---~~~v~~~~~v~-~~~vvl   91 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-P--GVSFGIST---DSEVLTHYNIT-GNTICL   91 (124)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T--TSEEEEEC---CHHHHHHTTCC-SSCEEE
T ss_pred             cceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-C--CceEEEEC---hHHHHHHcCCC-CCeEEE
Confidence            44556 467788888544 56899999999998   67999999999 5  69999764   46799999998 899999


Q ss_pred             EeCC-eEeeeecC----CCCHHHHHHHHHhh
Q psy14086        160 IESG-KKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       160 ~~~g-~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                      |++. +....|.|    ..+.+.|.+||...
T Consensus        92 fkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           92 FRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9985 45566886    78999999999864

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.62  E-value=7.8e-08  Score=76.35  Aligned_cols=90  Identities=16%  Similarity=0.322  Sum_probs=71.1

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..++++|.|| ++||++|....+.+.+++++++.. ++.++.|+.+.                            ...++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            4567899999 999999999999999999999642 57777776642                            24688


Q ss_pred             hhCCcc-----ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhh
Q psy14086        147 QSFDIK-----SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMK  186 (324)
Q Consensus       147 ~~~~i~-----~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~  186 (324)
                      +.||+.     .+|++++++. |+....+.|.    .+.+++.+.|+.+.
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            889999     8999999965 7666666663    35788888888765

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.62  E-value=3.1e-07  Score=71.01  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             cCCCEEEEEeCCC-CHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPW-CGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i  151 (324)
                      ..++++|.||++| |++|....+.++++++++ .  ++.++.|+.+.                       ...+++.|++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G--DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S--SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C--CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            4568899999999 999999999999999999 4  57777776542                       2456778888


Q ss_pred             cc------cceEEEEeC-CeEeeeecCC-----CCHHHHHHHHHhhh
Q psy14086        152 KS------YPTLLWIES-GKKLDKFQGS-----RTLETLVNYVSKMK  186 (324)
Q Consensus       152 ~~------~P~~~~~~~-g~~~~~~~g~-----~~~~~i~~fi~~~~  186 (324)
                      ..      .|+.++++. |+...++.|.     .+.+++.+.|++++
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            76      499988875 7766666542     24578888887764

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.61  E-value=1.5e-07  Score=75.29  Aligned_cols=94  Identities=13%  Similarity=0.189  Sum_probs=67.3

Q ss_pred             cCCCEEEEEeCCCCHh-HhhHHHHHHHHHHhcCCC--CCeEEEEecccc----------------------------chh
Q psy14086         96 SLGNHFVKFYAPWCGH-CQSLAPVWQELASHFKTE--EDVSIAKIDCTQ----------------------------HRS  144 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~--~~i~~~~vd~~~----------------------------~~~  144 (324)
                      ..++++|.||++||++ |....+.|.++..++..+  .++.++.|+++.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            4568899999999997 999999999988877521  256666665542                            134


Q ss_pred             hhhhCCcc-ccc---------------eEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        145 ICQSFDIK-SYP---------------TLLWIES-GKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       145 ~~~~~~i~-~~P---------------~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +++.|||. ..|               ++++++. |+....+.|..+.+.+.+.|.+.+...
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            77788887 344               6677765 777777888888888888888877643

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.61  E-value=3.9e-07  Score=73.52  Aligned_cols=97  Identities=11%  Similarity=0.213  Sum_probs=72.2

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------  271 (324)
                      +.++..+++++|.|| +.||++|....|.+.+++.++...  ++.++.|+.+..                          
T Consensus        46 l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D  123 (213)
T 2i81_A           46 LTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER--NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSD  123 (213)
T ss_dssp             GGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEEC
T ss_pred             HHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEEC
Confidence            444435678999999 999999999999999999765433  577777776541                          


Q ss_pred             cchhhhhhcCCC-----ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHhhc
Q psy14086        272 LSKDLCNQEGVD-----GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILKHK  317 (324)
Q Consensus       272 ~~~~~~~~~~i~-----~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~~~  317 (324)
                      ....+.+.|++.     .+|+++++ ++|+.+..+.|.    ++.+++.+.|++..
T Consensus       124 ~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          124 ITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             TTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            024577889998     89999888 578776665553    45888988887653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.59  E-value=1.2e-07  Score=76.40  Aligned_cols=81  Identities=23%  Similarity=0.300  Sum_probs=59.9

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------------------  270 (324)
                      +.+++.|+++||++|+.+.|.++++...      ++.+..+....                                   
T Consensus        87 k~~vv~F~d~~Cp~C~~~~~~l~~~~~~------~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~  160 (211)
T 1t3b_A           87 KHVVTVFMDITCHYCHLLHQQLKEYNDL------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  160 (211)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHHHHhC------CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCCh
Confidence            4689999999999999999999997631      24443332210                                   


Q ss_pred             -------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        271 -------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       271 -------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                             ..+.++.+.+||+++||+++ .+|+   .+.|..+.+.|.++|.+.
T Consensus       161 ~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          161 VKTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                   01345677899999999987 6775   457888999999998754

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.59  E-value=1e-07  Score=75.83  Aligned_cols=44  Identities=16%  Similarity=0.410  Sum_probs=38.9

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccccc
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCTQH  142 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~~~  142 (324)
                      .++.+|.||+.||++|+.+.|.|   .++++.+.+  ++.|..++++.+
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~  159 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFM  159 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcC
Confidence            45689999999999999999999   999999987  789999988653

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.58  E-value=2.5e-07  Score=74.05  Aligned_cols=92  Identities=13%  Similarity=0.201  Sum_probs=70.7

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .+++++|.|| +.||++|....|.+.++..++...  ++.++.|+.+..                          ....+
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  112 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI  112 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence            4578999999 999999999999999999765433  588888887641                          12467


Q ss_pred             hhhcCCC------ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHhhc
Q psy14086        277 CNQEGVD------GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILKHK  317 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~~~  317 (324)
                      .+.|++.      .+|+++++ ++|+.+..+.|.    .+.+++.+.|++..
T Consensus       113 ~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          113 MKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            7889998      99999988 578776665553    45788988887654

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.58  E-value=3.4e-07  Score=74.33  Aligned_cols=92  Identities=16%  Similarity=0.291  Sum_probs=71.1

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .+++++|.|| +.||++|....+.+.++..++...  ++.++.|+.+..                          ....+
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i  132 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  132 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHH
Confidence            3578999999 999999999999999999775443  577888876531                          12467


Q ss_pred             hhhcCCC------ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHhhc
Q psy14086        277 CNQEGVD------GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILKHK  317 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~~~  317 (324)
                      .+.|++.      .+|+++++ ++|+.+..+.|.    .+.+++.+.|++..
T Consensus       133 ~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          133 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            7889998      89999999 578776655554    46788988887654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.57  E-value=5.7e-07  Score=69.50  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             cCCcEEEEEeCCC-ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFFAPW-CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~  281 (324)
                      .+++++|.||++| |++|+...|.+.++..++  .  ++.++.++.+..                     ....+.+.|+
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  118 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G--DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFG  118 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S--SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTT
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C--CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhC
Confidence            4678999999999 999999999999999765  3  577777776531                     1245667788


Q ss_pred             CCc------cceEEEE-ecCeeeeeecCC-----CCHHHHHHHHHhhc
Q psy14086        282 VDG------FPSIYVY-KNGVRTAEYNGS-----RDLEELYQFILKHK  317 (324)
Q Consensus       282 i~~------~P~l~~~-~~g~~~~~~~g~-----~~~~~l~~fi~~~~  317 (324)
                      +..      .|+.+++ ++|+.+..+.|.     .+.+++.+.|++.+
T Consensus       119 v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          119 VYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             CBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             CccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            875      4988888 578777666543     24578888887654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.56  E-value=5.9e-07  Score=69.11  Aligned_cols=103  Identities=12%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             eeEeccccc--cccccCCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------
Q psy14086        211 VVSLTSENF--NDVIKSGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------  270 (324)
Q Consensus       211 v~~l~~~~~--~~~~~~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------  270 (324)
                      +...+++.+  .++ .+++++|.||+ .||++|....|.+.++..++...  ++.++.|+.+.                 
T Consensus        20 l~~~~G~~~~l~~~-~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~   96 (163)
T 3gkn_A           20 LSLSGGTQTTLRAH-AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA--GAKILGVSRDSVKSHDNFCAKQGFAFPL   96 (163)
T ss_dssp             EECSTTCEECSGGG-TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHCCSSCE
T ss_pred             ccCCCCCEEEHHHh-CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHhCCCceE
Confidence            444444442  232 45689999998 99999999999999999775444  57777777664                 


Q ss_pred             --ccchhhhhhcCCCc------------cceEEEE-ecCeeeeeecCCC---CHHHHHHHHHhh
Q psy14086        271 --ELSKDLCNQEGVDG------------FPSIYVY-KNGVRTAEYNGSR---DLEELYQFILKH  316 (324)
Q Consensus       271 --~~~~~~~~~~~i~~------------~P~l~~~-~~g~~~~~~~g~~---~~~~l~~fi~~~  316 (324)
                        +....+.+.|++..            .|+.+++ ++|+.+..+.|..   ..+++.+.|++.
T Consensus        97 ~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A           97 VSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             EECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence              11335667788876            8999999 4777766665543   346666666554

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.55  E-value=1.6e-07  Score=75.68  Aligned_cols=78  Identities=14%  Similarity=0.288  Sum_probs=59.5

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEE--ec--------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAK--ID--------------------------------------  138 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~--vd--------------------------------------  138 (324)
                      ..++.|+++||++|+.+.+.++++.+.     ++.+..  +.                                      
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~l~~~~~~-----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           88 HVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            468999999999999999999997653     233332  21                                      


Q ss_pred             ----cccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        139 ----CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       139 ----~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                          .+.+..+++++||+++|++++ .+|+   .+.|..+.++|.++|.+.
T Consensus       163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                113456788999999999988 5675   467889999999999763

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.55  E-value=3e-07  Score=71.72  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------------------  270 (324)
                      +..++.|+++||++|+.+.|.+.++..+ +.   ++.+...+...                                   
T Consensus        23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~-~~---~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~   98 (175)
T 3gyk_A           23 DVTVVEFFDYNCPYCRRAMAEVQGLVDA-DP---NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKA   98 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCC
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHh-CC---CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999998854 22   35555555321                                   


Q ss_pred             --------------------------------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        271 --------------------------------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       271 --------------------------------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                                      ..+..+...+||+++|++++  +|+   .+.|..+.+.|.+.|.+.+.
T Consensus        99 ~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l~  173 (175)
T 3gyk_A           99 NETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRARK  173 (175)
T ss_dssp             SHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHHh
Confidence                                            01234566789999999976  664   45799999999999987754

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.54  E-value=4.2e-07  Score=73.90  Aligned_cols=89  Identities=10%  Similarity=0.247  Sum_probs=68.6

Q ss_pred             cCCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..++++|.||+ +||++|....|.+.+++++|+.. .+.|+.|+++.                            ...++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR-NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            45578999996 99999999999999999999753 47777776652                            23577


Q ss_pred             hhCCcc------ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhh
Q psy14086        147 QSFDIK------SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKM  185 (324)
Q Consensus       147 ~~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~  185 (324)
                      +.|++.      .+|++++++. |+....+.|.    ...+++.+.|+..
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            889998      8999999976 7666666554    3567787777654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.53  E-value=6.8e-08  Score=65.03  Aligned_cols=72  Identities=10%  Similarity=0.211  Sum_probs=51.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh---hcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN---QEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      ++.|+++||++|+.+.+.++++         ++.|..+|++.  ++++.+   ++++.++|++  +.+|+.+   .| .+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~--~~~~~~~~~~~g~~~vP~~--~~~g~~~---~g-~~   65 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR---------GFDFEMINVDR--VPEAAEALRAQGFRQLPVV--IAGDLSW---SG-FR   65 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTT--CHHHHHHHHHTTCCSSCEE--EETTEEE---ES-CC
T ss_pred             EEEEcCCCChhHHHHHHHHHHC---------CCCeEEEECCC--CHHHHHHHHHhCCCccCEE--EECCEEE---ec-CC
Confidence            5789999999999999888763         25567788876  554433   5899999998  4466542   23 56


Q ss_pred             HHHHHHHHHhhc
Q psy14086        306 LEELYQFILKHK  317 (324)
Q Consensus       306 ~~~l~~fi~~~~  317 (324)
                      .+.|.++|.+..
T Consensus        66 ~~~l~~~l~~~~   77 (81)
T 1h75_A           66 PDMINRLHPAPH   77 (81)
T ss_dssp             HHHHGGGSCCC-
T ss_pred             HHHHHHHHhccc
Confidence            777877775543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.52  E-value=1.5e-06  Score=70.01  Aligned_cols=108  Identities=15%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             CeeEec-ccc--ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----c----cchhhh
Q psy14086        210 PVVSLT-SEN--FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----E----LSKDLC  277 (324)
Q Consensus       210 ~v~~l~-~~~--~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~----~~~~~~  277 (324)
                      .+..++ ++.  +.+ ..+++++|.||++||++|+ ..|.|+++..++...  ++.++-++++.     .    ...+++
T Consensus        39 ~l~d~~~G~~v~Lsd-~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~--g~~Vlgvs~d~f~~~e~~~~~~i~~f~  114 (215)
T 2i3y_A           39 EAIALNKNEYVSFKQ-YVGKHILFVNVATYCGLTA-QYPELNALQEELKPY--GLVVLGFPCNQFGKQEPGDNKEILPGL  114 (215)
T ss_dssp             EEEBSSSSCEEEGGG-GTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred             EeeeCCCCCEEcHHH-hCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC--CeEEEEEEccccCcCCCCCHHHHHHHH
Confidence            344455 444  333 3467899999999999999 889999999775433  57888777542     0    012233


Q ss_pred             h------hcCCC----------------------------------------------cc---ceEEEE-ecCeeeeeec
Q psy14086        278 N------QEGVD----------------------------------------------GF---PSIYVY-KNGVRTAEYN  301 (324)
Q Consensus       278 ~------~~~i~----------------------------------------------~~---P~l~~~-~~g~~~~~~~  301 (324)
                      +      +++++                                              .+   |+.+++ ++|+.+.+|.
T Consensus       115 ~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~  194 (215)
T 2i3y_A          115 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWS  194 (215)
T ss_dssp             HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEEC
T ss_pred             HhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeC
Confidence            3      44331                                              01   566666 5788888888


Q ss_pred             CCCCHHHHHHHHHhhcccCC
Q psy14086        302 GSRDLEELYQFILKHKVESH  321 (324)
Q Consensus       302 g~~~~~~l~~fi~~~~~~~~  321 (324)
                      |..+.++|.+.|.+.+.+.+
T Consensus       195 g~~~~~~l~~~I~~ll~~~~  214 (215)
T 2i3y_A          195 HRATVSSVKTDILAYLKQFK  214 (215)
T ss_dssp             TTSCHHHHHHHHHHHGGGC-
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            88889999999999887654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.52  E-value=7.9e-07  Score=72.23  Aligned_cols=90  Identities=11%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             cCCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .+++++|.||+ .||++|....|.+.++..++...  ++.++.|+.+..                          ....+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  145 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR--NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEI  145 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHH
Confidence            46789999996 99999999999999999775433  588888887641                          12356


Q ss_pred             hhhcCCC------ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHh
Q psy14086        277 CNQEGVD------GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILK  315 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~  315 (324)
                      .+.|++.      .+|+.+++ ++|+.+..+.|.    ...+++.+.|+.
T Consensus       146 ~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          146 SKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            7789998      89999999 578777666654    346777777764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.51  E-value=4e-07  Score=60.09  Aligned_cols=69  Identities=10%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh---hCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ---SFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      ++.|+++||++|+...+.++++        .+.|..+|++.++...+   .+++.++|++++  +|+.    .+..+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~----~~g~~~~~   68 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH----WSGFRPER   68 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE----EESCCHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE----EcCCCHHH
Confidence            5789999999999999888764        25666777776655554   799999999873  5643    33457888


Q ss_pred             HHHHHH
Q psy14086        178 LVNYVS  183 (324)
Q Consensus       178 i~~fi~  183 (324)
                      |.+++.
T Consensus        69 l~~~l~   74 (75)
T 1r7h_A           69 IKQLQA   74 (75)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            888873

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.49  E-value=1.5e-07  Score=63.28  Aligned_cols=71  Identities=6%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhh---hCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQ---SFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      ++.|+++||++|+.+.+.++++        .+.|..+|++.++.+.+   ++|+.++|+++  .+|+.    .+..+.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~----~~g~~~~~   68 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS----WSGFRPDM   68 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE----EESCCHHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE----EecCCHHH
Confidence            6789999999999999888763        36677778776654443   58999999883  36643    23457777


Q ss_pred             HHHHHHhh
Q psy14086        178 LVNYVSKM  185 (324)
Q Consensus       178 i~~fi~~~  185 (324)
                      |.+++.+.
T Consensus        69 l~~~l~~~   76 (81)
T 1h75_A           69 INRLHPAP   76 (81)
T ss_dssp             HGGGSCCC
T ss_pred             HHHHHhcc
Confidence            77776543

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.48  E-value=1e-06  Score=67.47  Aligned_cols=82  Identities=12%  Similarity=0.074  Sum_probs=58.8

Q ss_pred             HHHHhcCC-CEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhh
Q psy14086         91 FEKYVSLG-NHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQ  147 (324)
Q Consensus        91 f~~~~~~~-~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~  147 (324)
                      +.++..++ .+++.|| +.||++|....+.|.++.++++.+.  .++.|.++                     ....+++
T Consensus        28 l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  105 (159)
T 2a4v_A           28 LKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIG  105 (159)
T ss_dssp             HHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHH
T ss_pred             HHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHH
Confidence            34444333 4678877 8999999999999999999998653  45444432                     2245778


Q ss_pred             hCCccccc-------eEEEEeCCeEeeeecCCCCH
Q psy14086        148 SFDIKSYP-------TLLWIESGKKLDKFQGSRTL  175 (324)
Q Consensus       148 ~~~i~~~P-------~~~~~~~g~~~~~~~g~~~~  175 (324)
                      .||+...|       ++++ ++|+....+.|....
T Consensus       106 ~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A          106 LLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             HHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             HhCCcccccCCccceEEEE-cCCEEEEEEccCCcc
Confidence            89998888       5555 778888778776543

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.48  E-value=4.9e-07  Score=59.66  Aligned_cols=69  Identities=19%  Similarity=0.335  Sum_probs=51.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhh---hcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCN---QEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      ++.|+++||++|+.+.+.++++         ++.|..+|++.  ++++.+   .+++.++|++++  +|+.   ..| .+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~---------~i~~~~~di~~--~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g-~~   65 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA---------GLAYNTVDISL--DDEARDYVMALGYVQAPVVEV--DGEH---WSG-FR   65 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTT--CHHHHHHHHHTTCBCCCEEEE--TTEE---EES-CC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc---------CCCcEEEECCC--CHHHHHHHHHcCCCccCEEEE--CCeE---EcC-CC
Confidence            5789999999999999888764         25566778877  555444   789999999973  6653   234 57


Q ss_pred             HHHHHHHHH
Q psy14086        306 LEELYQFIL  314 (324)
Q Consensus       306 ~~~l~~fi~  314 (324)
                      .+.+.++|.
T Consensus        66 ~~~l~~~l~   74 (75)
T 1r7h_A           66 PERIKQLQA   74 (75)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            788888773

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.47  E-value=1.4e-06  Score=66.80  Aligned_cols=88  Identities=9%  Similarity=0.077  Sum_probs=60.7

Q ss_pred             cEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhhcCCCccc
Q psy14086        227 TVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQEGVDGFP  286 (324)
Q Consensus       227 ~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~~~i~~~P  286 (324)
                      .++|.|| +.||++|....|.+.++..++...  . .++.|+.+.                   +....+.+.|++...|
T Consensus        37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p  113 (159)
T 2a4v_A           37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEY--A-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP  113 (159)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT--C-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC--C-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            5788887 899999999999999998664333  2 555555543                   1134577889998888


Q ss_pred             -------eEEEEecCeeeeeecCCCCH---HHHHHHHHhhcc
Q psy14086        287 -------SIYVYKNGVRTAEYNGSRDL---EELYQFILKHKV  318 (324)
Q Consensus       287 -------~l~~~~~g~~~~~~~g~~~~---~~l~~fi~~~~~  318 (324)
                             ++++ ++|+.+..+.|....   +.+.+-|.+.+.
T Consensus       114 ~~g~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~  154 (159)
T 2a4v_A          114 LSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAE  154 (159)
T ss_dssp             SSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHH
Confidence                   6666 999888778776433   344444444443

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.46  E-value=9.8e-07  Score=68.81  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             cCCcEEEEEeCCC-ChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------cchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPW-CGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------LSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~~~~~~~~~~i  282 (324)
                      .+++++|.||+.| |++|+...|.+.++..+   .  ++.++.|+.+..                    ....+.+.|++
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  117 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGV  117 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c--CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCC
Confidence            4678999999999 99999999999999855   2  577887777631                    02456778888


Q ss_pred             Ccc---------ceEEEE-ecCeeeeeecC--CCCHHHHHHHHHhh
Q psy14086        283 DGF---------PSIYVY-KNGVRTAEYNG--SRDLEELYQFILKH  316 (324)
Q Consensus       283 ~~~---------P~l~~~-~~g~~~~~~~g--~~~~~~l~~fi~~~  316 (324)
                      ...         |+.+++ ++|+.+..+.|  .....++.++|+..
T Consensus       118 ~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l  163 (175)
T 1xvq_A          118 TIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAAL  163 (175)
T ss_dssp             BBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHH
T ss_pred             cccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHH
Confidence            776         888777 57887766653  22333455555443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.46  E-value=8.7e-07  Score=68.15  Aligned_cols=88  Identities=10%  Similarity=0.216  Sum_probs=65.1

Q ss_pred             CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhhhCCccc-
Q psy14086         97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQSFDIKS-  153 (324)
Q Consensus        97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~~~~i~~-  153 (324)
                      .++++|.||+ +||++|....+.+.++.++++.. .+.++.|.++                     ....+++.||+.. 
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            4578999998 99999999999999999999753 4666666554                     1246777888876 


Q ss_pred             -----------cceEEEEeC-CeEeeeecCC---CCHHHHHHHHHhh
Q psy14086        154 -----------YPTLLWIES-GKKLDKFQGS---RTLETLVNYVSKM  185 (324)
Q Consensus       154 -----------~P~~~~~~~-g~~~~~~~g~---~~~~~i~~fi~~~  185 (324)
                                 .|+.++++. |+....+.+.   ...+++.+.|++.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                       899999976 6666566543   2356677776654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.46  E-value=8.2e-07  Score=73.05  Aligned_cols=83  Identities=12%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc----------------------------------------
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC----------------------------------------  139 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~----------------------------------------  139 (324)
                      .++.|+.+||++|+.+.+.+.++.+.  +  ++.|..+..                                        
T Consensus       100 ~v~~F~D~~Cp~C~~~~~~l~~~~~~--g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~  175 (241)
T 1v58_A          100 IVYVFADPFCPYCKQFWQQARPWVDS--G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  175 (241)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHT--T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHhC--C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccc
Confidence            58999999999999999999987765  3  466554322                                        


Q ss_pred             ----------ccchhhhhhCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        140 ----------TQHRSICQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       140 ----------~~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                +.+..+++++||+++|++++.+. |+ .....|..+.+.|.++|.+...
T Consensus       176 ~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          176 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC---
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHHHH
Confidence                      12345678899999999999874 53 3467899999999999876654

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.44  E-value=5.3e-07  Score=70.35  Aligned_cols=71  Identities=8%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             cCCCEEEEEeCCC-CHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--------------c--------chhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPW-CGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--------------Q--------HRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--------------~--------~~~~~~~~~i~  152 (324)
                      ..++++|.||++| |++|....|.+.+++++ .   ++.|+.|+.+              .        ...+++.|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~---~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-S---GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T---TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c---CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCc
Confidence            3567899999999 99999999999999988 3   5777777665              1        24678889988


Q ss_pred             cc---------ceEEEEeC-CeEeeeec
Q psy14086        153 SY---------PTLLWIES-GKKLDKFQ  170 (324)
Q Consensus       153 ~~---------P~~~~~~~-g~~~~~~~  170 (324)
                      ..         |+.++++. |+....+.
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~I~~~~~  146 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGNVAYTEL  146 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             ccccccCCcccceEEEECCCCeEEEEEE
Confidence            76         88888875 77666665

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.43  E-value=1.5e-06  Score=70.07  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhhh------hCCcc------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSICQ------SFDIK------  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~~------~~~i~------  152 (324)
                      ..++++|.||++||++|+ .+|.|++++++|+.. .+.++.|.++.           -..+++      ++++.      
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d  132 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEK  132 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEee
Confidence            355789999999999999 899999999999753 58888876531           133444      44431      


Q ss_pred             -------------------------------------------ccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 -------------------------------------------SYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 -------------------------------------------~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                                                 ..|+.++++. |+.+.+|.|..+.++|.+.|++.+.
T Consensus       133 ~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          133 GDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK  211 (215)
T ss_dssp             CCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred             eccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                                       0156777765 7788888898899999999998875

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.41  E-value=1.8e-07  Score=66.44  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-----hhhhhhcCCCccceEEEEec
Q psy14086        219 FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-----KDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~i~~~P~l~~~~~  293 (324)
                      +++.+... .++.|+++||++|+.+.+.+++++.+ +   ..  +..+|++...+     ..+.+.+++.++|++  |.+
T Consensus         5 ~~~~i~~~-~v~~f~~~~C~~C~~~~~~L~~~~~~-~---~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~   75 (105)
T 1kte_A            5 VNSKIQPG-KVVVFIKPTCPFCRKTQELLSQLPFK-E---GL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIG   75 (105)
T ss_dssp             HHHHCCTT-CEEEEECSSCHHHHHHHHHHHHSCBC-T---TS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EET
T ss_pred             HHhhcccC-CEEEEEcCCCHhHHHHHHHHHHcCCC-C---Cc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EEC
Confidence            34444343 46779999999999999999887632 1   12  44556655101     356778999999997  457


Q ss_pred             CeeeeeecC---CCCHHHHHHHHHh
Q psy14086        294 GVRTAEYNG---SRDLEELYQFILK  315 (324)
Q Consensus       294 g~~~~~~~g---~~~~~~l~~fi~~  315 (324)
                      |+.+..+..   ......|.++|.+
T Consensus        76 g~~i~g~~~~~~~~~~g~L~~~l~~  100 (105)
T 1kte_A           76 KECIGGCTDLESMHKRGELLTRLQQ  100 (105)
T ss_dssp             TEEEESHHHHHHHHHHTHHHHHHHH
T ss_pred             CEEEeccHHHHHHHHCCcHHHHHHH
Confidence            765432221   1123456666654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.40  E-value=3.5e-07  Score=64.82  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             hhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-----hhhhhhCCccccceEEEEeCC
Q psy14086         89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-----RSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      +.+++.+... .++.|+++||++|+.+.+.|.++...+.   .+.++.+|.+.+     ..+.+.+|+.++|+++  .+|
T Consensus         3 ~~~~~~i~~~-~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~--~~g   76 (105)
T 1kte_A            3 AFVNSKIQPG-KVVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGK   76 (105)
T ss_dssp             HHHHHHCCTT-CEEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred             hHHHhhcccC-CEEEEEcCCCHhHHHHHHHHHHcCCCCC---ccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE--ECC
Confidence            4456666554 4677999999999999999998765543   255554443211     3577889999999974  367


Q ss_pred             eEee
Q psy14086        164 KKLD  167 (324)
Q Consensus       164 ~~~~  167 (324)
                      +.+.
T Consensus        77 ~~i~   80 (105)
T 1kte_A           77 ECIG   80 (105)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.40  E-value=1.2e-06  Score=69.40  Aligned_cols=86  Identities=14%  Similarity=0.298  Sum_probs=66.5

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------------------
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------------------  140 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------------------  140 (324)
                      ++.++.|+.+||++|..+.+.+.++.+++..  ++.|..+...                                     
T Consensus        26 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            3469999999999999999999999999877  6766644331                                     


Q ss_pred             ------------------------------------cchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        141 ------------------------------------QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       141 ------------------------------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                                                          .+...+..+||.++|++++  +|+......|..+.+.+.+.|..
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                                0123456789999999987  77666555588899999988887


Q ss_pred             hhC
Q psy14086        185 MKG  187 (324)
Q Consensus       185 ~~~  187 (324)
                      .+.
T Consensus       182 l~~  184 (192)
T 3h93_A          182 LIE  184 (192)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.39  E-value=3.3e-06  Score=68.39  Aligned_cols=97  Identities=11%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------  271 (324)
                      +.++..+++++|.|| +.||++|....|.+.++..++...  ++.++.|+.+..                          
T Consensus        50 L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D  127 (221)
T 2c0d_A           50 LSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK--NVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSD  127 (221)
T ss_dssp             GGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEEC
T ss_pred             HHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEEC
Confidence            444435678999999 999999999999999998665433  577777766541                          


Q ss_pred             cchhhhhhcCC-----CccceEEEEe-cCeeeeeecCC----CCHHHHHHHHHhhc
Q psy14086        272 LSKDLCNQEGV-----DGFPSIYVYK-NGVRTAEYNGS----RDLEELYQFILKHK  317 (324)
Q Consensus       272 ~~~~~~~~~~i-----~~~P~l~~~~-~g~~~~~~~g~----~~~~~l~~fi~~~~  317 (324)
                      ....+.+.|++     ..+|+.+++. +|+.+..+.|.    .+.+++.+.|++..
T Consensus       128 ~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          128 INKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             TTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            01245566777     3689999984 77776665553    46788888887653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.37  E-value=1.4e-06  Score=71.58  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------------------  270 (324)
                      +.+++.|+++||++|+.+.+.+.++..+   .  ++.+..+...-                                   
T Consensus        98 k~~v~~F~D~~Cp~C~~~~~~l~~~~~~---g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~  172 (241)
T 1v58_A           98 PVIVYVFADPFCPYCKQFWQQARPWVDS---G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  172 (241)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHT---T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHhC---C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Confidence            3589999999999999999999887632   2  46665544310                                   


Q ss_pred             -------------ccchhhhhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        271 -------------ELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       271 -------------~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                   ..+..+...+||+++|++++.. +|+. ....|..+.+.|.++|.+..+
T Consensus       173 ~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          173 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC---
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHHH
Confidence                         0123456788999999999876 3643 467898999999999987654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.33  E-value=3.4e-06  Score=67.55  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------chhhhh------hCCcc------
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------HRSICQ------SFDIK------  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------~~~~~~------~~~i~------  152 (324)
                      ..+.++|.||++||++| ..+|.|+++.++|+.. .+.++.|.++.           -..+++      ++++.      
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d  114 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEK  114 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeE
Confidence            35578999999999999 6789999999999763 48888776431           123444      44432      


Q ss_pred             -------------------------------------------ccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 -------------------------------------------SYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 -------------------------------------------~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                                                                 ..|+.++++. |+...+|.|..+.++|.+.|++.+.
T Consensus       115 ~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          115 GDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR  193 (207)
T ss_dssp             CCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                                       1157777765 7787888898899999999988764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.33  E-value=1.4e-07  Score=68.03  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-----chhhhhhcCCCccceEEEEecCeeeeeec
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-----SKDLCNQEGVDGFPSIYVYKNGVRTAEYN  301 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-----~~~~~~~~~i~~~P~l~~~~~g~~~~~~~  301 (324)
                      ..++.|+++||++|+.+.+.++++...   . ..  |..+|++...     ..++.+.+++.++|+++  .+|+.+..+.
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~---~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~igg~~   90 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFK---R-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGKTSIGGYS   90 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBC---T-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETTEEEESHH
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCC---c-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECCEEEeCcH
Confidence            457789999999999999888765422   1 12  6677777611     13677889999999873  3776654332


Q ss_pred             C---CCCHHHHHHHHHhh
Q psy14086        302 G---SRDLEELYQFILKH  316 (324)
Q Consensus       302 g---~~~~~~l~~fi~~~  316 (324)
                      +   ..+...|.++|.+.
T Consensus        91 ~~~~~~~~~~L~~~L~~~  108 (114)
T 2hze_A           91 DLLEIDNMDALGDILSSI  108 (114)
T ss_dssp             HHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHCChHHHHHHHc
Confidence            1   11234566666543

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=2.3e-07  Score=68.63  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             ccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc-ch----hhhhhcCCCccceEEEE
Q psy14086        217 ENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL-SK----DLCNQEGVDGFPSIYVY  291 (324)
Q Consensus       217 ~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~-~~----~~~~~~~i~~~P~l~~~  291 (324)
                      +.+.+.+....++ .|+++||++|+.+.+.|.++.         +.|..+|++... .+    ++.+.+++.++|++  |
T Consensus        18 ~~~~~~i~~~~vv-vf~~~~Cp~C~~~~~~L~~~~---------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~   85 (130)
T 2cq9_A           18 NQIQETISDNCVV-IFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--F   85 (130)
T ss_dssp             HHHHHHHHHSSEE-EEECSSCSHHHHHHHHHHHHT---------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--E
T ss_pred             HHHHHHHcCCcEE-EEEcCCChHHHHHHHHHHHcC---------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--E
Confidence            3355665555544 499999999999999998864         234456665510 13    36778999999998  3


Q ss_pred             ecCeeeeeec---CCCCHHHHHHHHHhh
Q psy14086        292 KNGVRTAEYN---GSRDLEELYQFILKH  316 (324)
Q Consensus       292 ~~g~~~~~~~---g~~~~~~l~~fi~~~  316 (324)
                      .+|+.+.-+.   +......|.++|...
T Consensus        86 i~G~~igg~~~l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           86 VNGTFIGGATDTHRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             ETTEEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred             ECCEEEcChHHHHHHHHcCcHHHHHHHc
Confidence            4776553321   112334566666654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.31  E-value=7.8e-06  Score=63.90  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             CeeEeccccc--cccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC----------------
Q psy14086        210 PVVSLTSENF--NDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ----------------  270 (324)
Q Consensus       210 ~v~~l~~~~~--~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~----------------  270 (324)
                      .+...+++.+  .++ .+++++|.|| +.||+.|....|.+.++..++...  ++.++.|..+.                
T Consensus        35 ~l~~~~G~~v~l~d~-~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~--~~~vv~Vs~D~~~~~~~~~~~~~~~f~  111 (179)
T 3ixr_A           35 PLMLSGSTCKTLSDY-TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI--NATVLGVSRDSVKSHDSFCAKQGFTFP  111 (179)
T ss_dssp             CEEEGGGEEECGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESCCHHHHHHHHHHHTCCSC
T ss_pred             eEECCCCCEEeHHHH-CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHcCCceE
Confidence            3555555543  332 3567888888 999999999999999999775444  57777777664                


Q ss_pred             ---ccchhhhhhcCCCc------------cceEEEE-ecCeeeeeecCC---CCHHHHHHHHHhh
Q psy14086        271 ---ELSKDLCNQEGVDG------------FPSIYVY-KNGVRTAEYNGS---RDLEELYQFILKH  316 (324)
Q Consensus       271 ---~~~~~~~~~~~i~~------------~P~l~~~-~~g~~~~~~~g~---~~~~~l~~fi~~~  316 (324)
                         +....+.+.|++..            .|+.+++ ++|+.+..+.+.   ...+++.+.|++.
T Consensus       112 ~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          112 LVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             EEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             EEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence               11235667777753            5888888 578776666553   3356666666543

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.31  E-value=6.2e-06  Score=66.06  Aligned_cols=93  Identities=15%  Similarity=0.128  Sum_probs=64.8

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----c----cchhhhh------hcCCC-----
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----E----LSKDLCN------QEGVD-----  283 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~----~~~~~~~------~~~i~-----  283 (324)
                      .+++++|.||++||++| ...|.|+++..++...  ++.++-++++.     .    ....+++      +++++     
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~--g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~  113 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF--GLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFE  113 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG--TEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC--CEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeee
Confidence            46789999999999999 6789999999775433  57787777541     0    0122333      34321     


Q ss_pred             ---------------------------c--------------c---ceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        284 ---------------------------G--------------F---PSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       284 ---------------------------~--------------~---P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                                                 +              +   |+.+++ ++|+.+..|.|..+.++|.+.|.+.+.
T Consensus       114 d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          114 KGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR  193 (207)
T ss_dssp             CCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                       0              1   566666 578888888888888999998887765


Q ss_pred             c
Q psy14086        319 E  319 (324)
Q Consensus       319 ~  319 (324)
                      +
T Consensus       194 ~  194 (207)
T 2r37_A          194 R  194 (207)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.30  E-value=2.3e-06  Score=65.46  Aligned_cols=90  Identities=14%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------cchhhhhhcCCC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------LSKDLCNQEGVD  283 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------~~~~~~~~~~i~  283 (324)
                      .+++++|.|| +.||++|....|.+.++..++...  ++.+..++.+..                   .+..+.+.||+.
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~--~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~  106 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV--NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVA  106 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGC--SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred             CCCeEEEEecCCCCCCccccchhhccccccccccc--CceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCc
Confidence            4678999998 999999999999998888664433  577777776551                   123455667663


Q ss_pred             -----------ccceEEEE-ecCeeeeeec-----CCCCHHHHHHHHHh
Q psy14086        284 -----------GFPSIYVY-KNGVRTAEYN-----GSRDLEELYQFILK  315 (324)
Q Consensus       284 -----------~~P~l~~~-~~g~~~~~~~-----g~~~~~~l~~fi~~  315 (324)
                                 ..|+.+++ ++|+....+.     +..+.+++.+.|+.
T Consensus       107 ~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A          107 WEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             EECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             cccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                       35677777 4676654432     33467888887764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=5.8e-07  Score=66.41  Aligned_cols=90  Identities=11%  Similarity=0.229  Sum_probs=56.8

Q ss_pred             ChhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-h----hhhhhCCccccceEEEEe
Q psy14086         87 TEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-R----SICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        87 ~~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-~----~~~~~~~i~~~P~~~~~~  161 (324)
                      ..+.+.+.+.... ++.|+++||++|+.+.+.|.++..      .+..+.+|...+ +    .+.+.+++.++|+++  .
T Consensus        16 ~~~~~~~~i~~~~-vvvf~~~~Cp~C~~~~~~L~~~~i------~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i   86 (130)
T 2cq9_A           16 PVNQIQETISDNC-VVIFSKTSCSYCTMAKKLFHDMNV------NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V   86 (130)
T ss_dssp             HHHHHHHHHHHSS-EEEEECSSCSHHHHHHHHHHHHTC------CCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--E
T ss_pred             HHHHHHHHHcCCc-EEEEEcCCChHHHHHHHHHHHcCC------CcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--E
Confidence            3455666665555 455999999999999999988642      233444443211 3    377889999999884  3


Q ss_pred             CCeEeeeec---CCCCHHHHHHHHHhh
Q psy14086        162 SGKKLDKFQ---GSRTLETLVNYVSKM  185 (324)
Q Consensus       162 ~g~~~~~~~---g~~~~~~i~~fi~~~  185 (324)
                      +|+.+..+.   +......|.++|...
T Consensus        87 ~G~~igg~~~l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           87 NGTFIGGATDTHRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             TTEEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred             CCEEEcChHHHHHHHHcCcHHHHHHHc
Confidence            676554321   122334566777665

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.28  E-value=2.4e-06  Score=69.17  Aligned_cols=90  Identities=12%  Similarity=0.275  Sum_probs=67.1

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..++++|.|| ++||++|....|.|.+++++|+.. ++.++.|..+.                            ...++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK-NVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            4567899999 999999999999999999998642 46666665432                            12356


Q ss_pred             hhCCc-----cccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhh
Q psy14086        147 QSFDI-----KSYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMK  186 (324)
Q Consensus       147 ~~~~i-----~~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~  186 (324)
                      +.||+     ...|+.++++. |+....+.|.    .+.+++.+.|+.+.
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            67787     36899999976 6666555553    56889999888765

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.28  E-value=3.1e-07  Score=66.27  Aligned_cols=70  Identities=11%  Similarity=0.200  Sum_probs=48.3

Q ss_pred             hHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch-------hhhhhCCccccceEEEEeC
Q psy14086         90 SFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR-------SICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        90 ~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i~~~P~~~~~~~  162 (324)
                      .+.+.+.. ..++.|+++||++|+.+.+.|.++.... +  +  |..+|++.++       .+.+.+|+.++|++++  +
T Consensus        11 ~~~~~i~~-~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~--~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~   82 (114)
T 2hze_A           11 FVQQRLAN-NKVTIFVKYTCPFCRNALDILNKFSFKR-G--A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--G   82 (114)
T ss_dssp             HHHTTCCT-TCEEEEECTTCHHHHHHHHHHTTSCBCT-T--S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred             HHHHHhcc-CCEEEEEeCCChhHHHHHHHHHHcCCCc-C--c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--C
Confidence            34444433 3577899999999999999887654331 1  2  6666766553       6888899999998744  6


Q ss_pred             CeEee
Q psy14086        163 GKKLD  167 (324)
Q Consensus       163 g~~~~  167 (324)
                      |+.+.
T Consensus        83 g~~ig   87 (114)
T 2hze_A           83 KTSIG   87 (114)
T ss_dssp             TEEEE
T ss_pred             CEEEe
Confidence            75543

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.28  E-value=3.5e-06  Score=66.89  Aligned_cols=41  Identities=22%  Similarity=0.498  Sum_probs=35.6

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT  140 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~  140 (324)
                      ++.++.|+++||++|+.+.+.+.++.+.+.+  ++.|..++..
T Consensus        26 ~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           26 KIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA   66 (195)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence            3579999999999999999999999999987  6777777663

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.28  E-value=3.9e-06  Score=66.07  Aligned_cols=90  Identities=9%  Similarity=0.050  Sum_probs=65.9

Q ss_pred             CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-------------------------hhhhhhCC
Q psy14086         97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-------------------------RSICQSFD  150 (324)
Q Consensus        97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-------------------------~~~~~~~~  150 (324)
                      .++++|.||+ .||++|....+.|.+++++++.. .+.++.|..+..                         ..+++.||
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            4567899995 99999999999999999998642 466666654311                         23455667


Q ss_pred             cc------ccceEEEEeC-CeEeeeecCCC----CHHHHHHHHHhhhC
Q psy14086        151 IK------SYPTLLWIES-GKKLDKFQGSR----TLETLVNYVSKMKG  187 (324)
Q Consensus       151 i~------~~P~~~~~~~-g~~~~~~~g~~----~~~~i~~fi~~~~~  187 (324)
                      +.      ..|+.++++. |+....+.|..    +.+++.+.|+.+..
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            65      3699999975 76666666643    68889998887754

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.27  E-value=5.7e-07  Score=67.73  Aligned_cols=88  Identities=11%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             hhhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-h----hhhhhCCccccceEEEEeC
Q psy14086         88 EESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-R----SICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        88 ~~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-~----~~~~~~~i~~~P~~~~~~~  162 (324)
                      .+.+.+.+....+ +.|+++||++|+.+.+.|.++..      .+..+.+|...+ +    .+.+.+|+.++|+++  .+
T Consensus        39 ~~~~~~~i~~~~V-vvf~~~~Cp~C~~~k~~L~~~~i------~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~  109 (146)
T 2ht9_A           39 VNQIQETISDNCV-VIFSKTSCSYCTMAKKLFHDMNV------NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VN  109 (146)
T ss_dssp             HHHHHHHHHHCSE-EEEECTTCHHHHHHHHHHHHHTC------CCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ET
T ss_pred             HHHHHHHhcCCCE-EEEECCCChhHHHHHHHHHHcCC------CeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--EC
Confidence            4567777766554 45999999999999999988642      233444443311 3    377889999999884  36


Q ss_pred             CeEeeeec---CCCCHHHHHHHHHh
Q psy14086        163 GKKLDKFQ---GSRTLETLVNYVSK  184 (324)
Q Consensus       163 g~~~~~~~---g~~~~~~i~~fi~~  184 (324)
                      |+.+..+.   +......|.+++..
T Consensus       110 G~~igG~d~l~~l~~~g~L~~~L~~  134 (146)
T 2ht9_A          110 GTFIGGATDTHRLHKEGKLLPLVHQ  134 (146)
T ss_dssp             TEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred             CEEEeCchHHHHHHHcChHHHHHHH
Confidence            75543221   11122345666655

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.27  E-value=2.5e-06  Score=67.49  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=64.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------------------
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------------------  271 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------------------  271 (324)
                      .++.++.|+++||++|+.+.|.+.++..+ +..  ++.|..+...-.                                 
T Consensus        25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~-~~~--~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~  101 (192)
T 3h93_A           25 GKIEVVELFWYGCPHCYAFEPTIVPWSEK-LPA--DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKE  101 (192)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHT-CCT--TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHh-CCC--CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            35689999999999999999999999854 443  577765554200                                 


Q ss_pred             --------------------------------------cchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        272 --------------------------------------LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       272 --------------------------------------~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                                                            .+......+||+++|++++  +|+......|..+.+.+.+.|
T Consensus       102 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i  179 (192)
T 3h93_A          102 HKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLA  179 (192)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHH
Confidence                                                  0112345679999999977  776655555888889888888


Q ss_pred             Hhhcc
Q psy14086        314 LKHKV  318 (324)
Q Consensus       314 ~~~~~  318 (324)
                      ...+.
T Consensus       180 ~~l~~  184 (192)
T 3h93_A          180 DYLIE  184 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.26  E-value=8.8e-06  Score=63.02  Aligned_cols=110  Identities=11%  Similarity=0.069  Sum_probs=73.4

Q ss_pred             CeeEeccccc--cccccCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------
Q psy14086        210 PVVSLTSENF--NDVIKSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------  271 (324)
Q Consensus       210 ~v~~l~~~~~--~~~~~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------  271 (324)
                      .+...+++.+  .++ .+++++|.||+.||+ .|....+.+.++..++.....++.++.|..+..               
T Consensus        12 ~l~d~~G~~v~l~~~-~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~   90 (170)
T 3me7_A           12 TLVDSYGNEFQLKNL-KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGI   90 (170)
T ss_dssp             EEEETTCCEEEGGGG-TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTC
T ss_pred             EEEcCCcCEEchHHh-CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCC
Confidence            3445555443  233 467899999999997 699999999999866433223577777665410               


Q ss_pred             --------------cchhhhhhcCC---------CccceEEEE-ecCeeeeeecCC-CCHHHHHHHHHhhcccC
Q psy14086        272 --------------LSKDLCNQEGV---------DGFPSIYVY-KNGVRTAEYNGS-RDLEELYQFILKHKVES  320 (324)
Q Consensus       272 --------------~~~~~~~~~~i---------~~~P~l~~~-~~g~~~~~~~g~-~~~~~l~~fi~~~~~~~  320 (324)
                                    ....+++.||+         ...|+++++ ++|+.+..|.|. .+.++|.+-|.+...++
T Consensus        91 ~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~~  164 (170)
T 3me7_A           91 DGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEG  164 (170)
T ss_dssp             CSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred             CCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhccc
Confidence                          01133444443         234778777 578777677886 67899999998876654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.25  E-value=3.1e-07  Score=69.24  Aligned_cols=86  Identities=15%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-cch----hhhhhcCCCccceEEEEec
Q psy14086        219 FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-LSK----DLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-~~~----~~~~~~~i~~~P~l~~~~~  293 (324)
                      +.+.+....+ +.|+++||++|+.+.+.|.++.         +.|..+|++.. ..+    ++.+.+++.++|++  |.+
T Consensus        42 ~~~~i~~~~V-vvf~~~~Cp~C~~~k~~L~~~~---------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--fi~  109 (146)
T 2ht9_A           42 IQETISDNCV-VIFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVN  109 (146)
T ss_dssp             HHHHHHHCSE-EEEECTTCHHHHHHHHHHHHHT---------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--EET
T ss_pred             HHHHhcCCCE-EEEECCCChhHHHHHHHHHHcC---------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE--EEC
Confidence            5555555544 4499999999999999998774         22344555541 013    36778999999998  347


Q ss_pred             Ceeeeeec---CCCCHHHHHHHHHhh
Q psy14086        294 GVRTAEYN---GSRDLEELYQFILKH  316 (324)
Q Consensus       294 g~~~~~~~---g~~~~~~l~~fi~~~  316 (324)
                      |+.+.-+.   +......|.++|...
T Consensus       110 G~~igG~d~l~~l~~~g~L~~~L~~~  135 (146)
T 2ht9_A          110 GTFIGGATDTHRLHKEGKLLPLVHQC  135 (146)
T ss_dssp             TEEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred             CEEEeCchHHHHHHHcChHHHHHHHc
Confidence            76543221   112233466666554

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.24  E-value=5.4e-06  Score=66.66  Aligned_cols=90  Identities=11%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..++++|.|| ++||++|....+.|.+++++|+.. ++.++.|.++.                            ...++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  125 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  125 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHH
Confidence            3457899999 999999999999999999999642 56666665431                            12455


Q ss_pred             hhCCcc------ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhh
Q psy14086        147 QSFDIK------SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMK  186 (324)
Q Consensus       147 ~~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~  186 (324)
                      +.||+.      ..|+.++++. |+....+.|.    .+.+++.+.|+.+.
T Consensus       126 ~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          126 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            667774      5899999976 6666555553    47788988888765

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.24  E-value=1.2e-05  Score=62.20  Aligned_cols=92  Identities=11%  Similarity=0.116  Sum_probs=67.7

Q ss_pred             CCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcCCC-CCeEEEEeccc-------------------------------cch
Q psy14086         97 LGNHFVKFYAPWCG-HCQSLAPVWQELASHFKTE-EDVSIAKIDCT-------------------------------QHR  143 (324)
Q Consensus        97 ~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~-------------------------------~~~  143 (324)
                      .++++|.||++||+ .|....+.++++.++++.. .++.++.|.++                               ...
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            56789999999997 6999999999999999631 24666655433                               112


Q ss_pred             hhhhhCCc---------cccceEEEEeC-CeEeeeecCC-CCHHHHHHHHHhhhCC
Q psy14086        144 SICQSFDI---------KSYPTLLWIES-GKKLDKFQGS-RTLETLVNYVSKMKGP  188 (324)
Q Consensus       144 ~~~~~~~i---------~~~P~~~~~~~-g~~~~~~~g~-~~~~~i~~fi~~~~~~  188 (324)
                      .+++.||+         ...|+++++++ |+....|.|. .+.++|.+.|.+....
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTC
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcc
Confidence            45555553         34678888876 6666667775 7899999999998774

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.23  E-value=8.5e-06  Score=64.12  Aligned_cols=92  Identities=12%  Similarity=0.049  Sum_probs=65.7

Q ss_pred             cCCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086        224 KSGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~  279 (324)
                      .+++++|.||+ .||++|....|.|.++..++...  ++.++.|+.+..                       ....+.+.
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~  106 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  106 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHH
Confidence            45789999995 89999999999999998665433  577777766541                       01234556


Q ss_pred             cCCC------ccceEEEEe-cCeeeeeecCCC----CHHHHHHHHHhhc
Q psy14086        280 EGVD------GFPSIYVYK-NGVRTAEYNGSR----DLEELYQFILKHK  317 (324)
Q Consensus       280 ~~i~------~~P~l~~~~-~g~~~~~~~g~~----~~~~l~~fi~~~~  317 (324)
                      |++.      ..|+.+++. +|+.+..+.|..    +.+++.+.|+...
T Consensus       107 ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          107 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            6765      269998884 787776666643    5788888887654

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.23  E-value=3.2e-06  Score=69.49  Aligned_cols=87  Identities=9%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------------chhhhhhCCcc
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------------HRSICQSFDIK  152 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------------~~~~~~~~~i~  152 (324)
                      +++.|+++||+.|....+.|.+++.+|+.. ++.++.|+++.                           ...+++.||+.
T Consensus        37 VL~~fpa~~CpvC~tEl~~l~~l~~ef~~~-gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~  115 (249)
T 3a2v_A           37 VLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLL  115 (249)
T ss_dssp             EEECCSCTTCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCC
T ss_pred             EEEEEcCCCCcChHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCc
Confidence            356789999999999999999999999752 47777776642                           24578888987


Q ss_pred             -------ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhhhC
Q psy14086        153 -------SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKMKG  187 (324)
Q Consensus       153 -------~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~~~  187 (324)
                             .+|+++++++ |.....+.|.    ++.++|.+.|..+..
T Consensus       116 ~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~  162 (249)
T 3a2v_A          116 HAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKL  162 (249)
T ss_dssp             CTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             cccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHHh
Confidence                   8999999976 6655554443    478999999887653

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.22  E-value=7.8e-06  Score=63.90  Aligned_cols=89  Identities=11%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------chhhhhhCCccc-
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------HRSICQSFDIKS-  153 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~~~~~~~~~i~~-  153 (324)
                      .++++|.|| +.||++|....+.|+++.++++.. .+.++.|..+.                     ...+++.|++.. 
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            446778888 999999999999999999999763 46666665542                     245677788753 


Q ss_pred             -----------cceEEEEeC-CeEeeeecCC---CCHHHHHHHHHhhh
Q psy14086        154 -----------YPTLLWIES-GKKLDKFQGS---RTLETLVNYVSKMK  186 (324)
Q Consensus       154 -----------~P~~~~~~~-g~~~~~~~g~---~~~~~i~~fi~~~~  186 (324)
                                 .|+.++++. |+....+.+.   ...+++.+.|+++.
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHA  177 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence                       588999976 7666556543   34566777776543

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.21  E-value=9.3e-06  Score=65.29  Aligned_cols=92  Identities=9%  Similarity=0.212  Sum_probs=66.4

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .+++++|.|| +.||++|....|.+.++..++...  ++.++.|+.+..                          ....+
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  124 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI  124 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHH
Confidence            4578999999 999999999999999998664433  577777776541                          01245


Q ss_pred             hhhcCCC------ccceEEEEe-cCeeeeeecCC----CCHHHHHHHHHhhc
Q psy14086        277 CNQEGVD------GFPSIYVYK-NGVRTAEYNGS----RDLEELYQFILKHK  317 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~~-~g~~~~~~~g~----~~~~~l~~fi~~~~  317 (324)
                      .+.|++.      .+|+.+++. +|+.+..+.|.    .+.+++.+.|+...
T Consensus       125 ~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          125 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            5667773      589999984 77776665553    46788888887643

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.21  E-value=1.2e-05  Score=62.35  Aligned_cols=88  Identities=13%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~  281 (324)
                      .+++++|.|| +.||++|....|.+.++..++  .  ++.++.|+.+..                     ....+ +.|+
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~g  120 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E--GVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYG  120 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGT
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C--CceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhC
Confidence            3568999998 799999999999999988553  3  577777766540                     12345 6677


Q ss_pred             CCc---------cceEEEEe-cCeeeeeecC-----CCCHHHHHHHHHhh
Q psy14086        282 VDG---------FPSIYVYK-NGVRTAEYNG-----SRDLEELYQFILKH  316 (324)
Q Consensus       282 i~~---------~P~l~~~~-~g~~~~~~~g-----~~~~~~l~~fi~~~  316 (324)
                      +..         .|+.+++. +|+.+..+.|     ..+.+++.+.|++.
T Consensus       121 v~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          121 VLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             CBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             CEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence            642         58998885 7777666654     34567888888754

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.20  E-value=1.6e-05  Score=59.86  Aligned_cols=106  Identities=9%  Similarity=0.145  Sum_probs=76.2

Q ss_pred             CCeeEeccccccccccCC-cEE-EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc--
Q psy14086        209 EPVVSLTSENFNDVIKSG-TVF-IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG--  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~~-~~~-v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--  284 (324)
                      +.|.+++.++...+..+. +.. +.|....-..-..+.+.++++|.+ +++  ++.|+.+|.+......+.+.||++.  
T Consensus        14 PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~-fkg--ki~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAES-FKG--KILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             -CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHT-TTT--TCEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             CeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHH-cCC--ceEEEEEecchHhHHHHHHHcCCCccc
Confidence            579999999988887665 333 334433333345678999999955 555  7999999984322556778899985  


Q ss_pred             cceEEEEec---Ceeeeeec-CCCCHHHHHHHHHhhcc
Q psy14086        285 FPSIYVYKN---GVRTAEYN-GSRDLEELYQFILKHKV  318 (324)
Q Consensus       285 ~P~l~~~~~---g~~~~~~~-g~~~~~~l~~fi~~~~~  318 (324)
                      +|+++++..   ++++ .+. +..+.+.|.+|+.+++.
T Consensus        91 ~P~v~i~~~~~~~~Ky-~~~~~~~t~~~i~~Fv~d~l~  127 (147)
T 3bj5_A           91 CPAVRLITLEEEMTKY-KPESEELTAERITEFCHRFLE  127 (147)
T ss_dssp             CSEEEEEECSSSCEEE-CCSCCCCCHHHHHHHHHHHHT
T ss_pred             CCEEEEEecccccccC-CCCcccCCHHHHHHHHHHHHc
Confidence            899999864   3443 444 77899999999999865

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.19  E-value=1.2e-05  Score=66.15  Aligned_cols=95  Identities=16%  Similarity=0.296  Sum_probs=65.1

Q ss_pred             ccccccCCcEEEEEe-CCCChhhh-hhhHhHHHHHHHhhcCCCCe-EEEEEecCCc--------------------cchh
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCK-RLAPTWEELGTKLLDNKHGI-VIAKVDCTQE--------------------LSKD  275 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~-~~~~~~~~~a~~~~~~~~~~-~~~~id~~~~--------------------~~~~  275 (324)
                      +.+...+++++|.|| +.||++|. ...|.+.++..++...  ++ .++.++.+..                    ....
T Consensus        27 l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~  104 (241)
T 1nm3_A           27 TSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY--GVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGE  104 (241)
T ss_dssp             HHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT--TCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSH
T ss_pred             HHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcH
Confidence            334245678999998 99999999 8999999998665443  57 6777776541                    1234


Q ss_pred             hhhhcCCC-----------ccceEEEEecCeeeeeecCC---------CCHHHHHHHHHh
Q psy14086        276 LCNQEGVD-----------GFPSIYVYKNGVRTAEYNGS---------RDLEELYQFILK  315 (324)
Q Consensus       276 ~~~~~~i~-----------~~P~l~~~~~g~~~~~~~g~---------~~~~~l~~fi~~  315 (324)
                      +.+.||+.           ..|+.+++++|+....+.|.         .+.+++.+.|..
T Consensus       105 ~~~~~gv~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~  164 (241)
T 1nm3_A          105 FTEGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP  164 (241)
T ss_dssp             HHHHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred             HHHHhCceeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence            56677775           34766555888876666554         356777777754

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.18  E-value=2e-06  Score=65.76  Aligned_cols=89  Identities=13%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------chhhhhhCCcc-
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------HRSICQSFDIK-  152 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~~~~~~~~~i~-  152 (324)
                      ..+.+++.|| ++||++|....+.++++..+++.. .+.++.|..+.                     +..+++.||+. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~-~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~  107 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV-NAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAW  107 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGC-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhccccccccccc-CceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcc
Confidence            3567888898 999999999999999999988653 46666555432                     13456677763 


Q ss_pred             ----------ccceEEEEeC-CeEeeeec-----CCCCHHHHHHHHHhh
Q psy14086        153 ----------SYPTLLWIES-GKKLDKFQ-----GSRTLETLVNYVSKM  185 (324)
Q Consensus       153 ----------~~P~~~~~~~-g~~~~~~~-----g~~~~~~i~~fi~~~  185 (324)
                                ..|+.++++. |+....+.     +..+.+++.+.|+.+
T Consensus       108 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          108 EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             ECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             ccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                      3577888876 65544433     345778888887653

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.15  E-value=2.1e-05  Score=60.35  Aligned_cols=88  Identities=9%  Similarity=0.065  Sum_probs=61.9

Q ss_pred             cCCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~  281 (324)
                      .+++++|.||+ .||++|....|.++++..++  .  ++.+..|+.+..                     ....+.+.|+
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~--~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g  116 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D--NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYA  116 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHT
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhC
Confidence            45689999995 99999999999999998553  3  577777776541                     1234556677


Q ss_pred             CC----c--cceEEEE-ecCeeeeeecCC-----CCHHHHHHHHHh
Q psy14086        282 VD----G--FPSIYVY-KNGVRTAEYNGS-----RDLEELYQFILK  315 (324)
Q Consensus       282 i~----~--~P~l~~~-~~g~~~~~~~g~-----~~~~~l~~fi~~  315 (324)
                      +.    +  .|+.+++ ++|+.+..+.|.     .+.+++.+.|++
T Consensus       117 v~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          117 LLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             CBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             CccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            75    3  3899888 478777666553     234777777764

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.15  E-value=1.3e-05  Score=62.15  Aligned_cols=85  Identities=12%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCcc
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDIK  152 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i~  152 (324)
                      .++++|.|| +.||++|....+.++++.+++ .  ++.++.|..+.                       ...+ +.||+.
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~  122 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-E--GVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVL  122 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCB
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C--CceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCE
Confidence            456788998 899999999999999999988 4  57666665432                       1234 556654


Q ss_pred             c---------cceEEEEeC-CeEeeeecC-----CCCHHHHHHHHHhh
Q psy14086        153 S---------YPTLLWIES-GKKLDKFQG-----SRTLETLVNYVSKM  185 (324)
Q Consensus       153 ~---------~P~~~~~~~-g~~~~~~~g-----~~~~~~i~~fi~~~  185 (324)
                      .         .|+.++++. |+....+.|     ..+.+++.+.|++.
T Consensus       123 ~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          123 IGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             BCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             ecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence            2         588988875 666666653     34577888887764

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.15  E-value=3.9e-06  Score=57.73  Aligned_cols=71  Identities=15%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---cc----hhhhhhCCccccceEEEEeCCeEeeeecCCC
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---QH----RSICQSFDIKSYPTLLWIESGKKLDKFQGSR  173 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---~~----~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~  173 (324)
                      ++.|+++||++|+.....+.++.-      .+....++..   ..    ..+.+.+++.++|++++  +|+.    .+..
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~gi------~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~----i~G~   81 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREGV------DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH----VLGY   81 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHTC------CCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE----EESC
T ss_pred             EEEEECCCChHHHHHHHHHHHcCC------CcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE----EeCC
Confidence            677999999999999988887642      2444444421   22    56677889999999876  5632    3456


Q ss_pred             CHHHHHHHHH
Q psy14086        174 TLETLVNYVS  183 (324)
Q Consensus       174 ~~~~i~~fi~  183 (324)
                      +.+.|.+++.
T Consensus        82 ~~~~l~~~l~   91 (92)
T 3ic4_A           82 NEEKLKELIR   91 (92)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHhc
Confidence            8999999875

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.15  E-value=3e-06  Score=58.32  Aligned_cols=72  Identities=17%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--c-cc----hhhhhhcCCCccceEEEEecCeeeeee
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--E-LS----KDLCNQEGVDGFPSIYVYKNGVRTAEY  300 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~-~~----~~~~~~~~i~~~P~l~~~~~g~~~~~~  300 (324)
                      .++.|+++||++|+.+.+.++++..       .+.+  +|++.  . ..    +++.+.+++.++|++++  +|+.+   
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~gi-------~~~~--~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~i---   78 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREGV-------DFEV--IWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKHV---   78 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHTC-------CCEE--EEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEEE---
T ss_pred             eEEEEECCCChHHHHHHHHHHHcCC-------CcEE--EEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEEE---
Confidence            3667999999999999988887641       2333  44442  1 12    55667789999999976  66432   


Q ss_pred             cCCCCHHHHHHHHH
Q psy14086        301 NGSRDLEELYQFIL  314 (324)
Q Consensus       301 ~g~~~~~~l~~fi~  314 (324)
                      .| .+.+.|.++|.
T Consensus        79 ~G-~~~~~l~~~l~   91 (92)
T 3ic4_A           79 LG-YNEEKLKELIR   91 (92)
T ss_dssp             ES-CCHHHHHHHHH
T ss_pred             eC-CCHHHHHHHhc
Confidence            34 58899999875

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.13  E-value=1.4e-05  Score=65.50  Aligned_cols=89  Identities=11%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             CCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----------------------------hhhhh
Q psy14086         97 LGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----------------------------RSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----------------------------~~~~~  147 (324)
                      .++++|.||+ .||++|....+.|.+++++|+.. .+.++.|.++..                            ..+++
T Consensus        77 Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           77 GKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            4567899999 99999999999999999999753 466666655421                            34667


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                      .||+.      ..|++++++. |+....+.+    ..+.+++.+.|....
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~lq  205 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQ  205 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            78887      6899999976 655554444    356788888887654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.12  E-value=8.1e-06  Score=64.73  Aligned_cols=42  Identities=24%  Similarity=0.494  Sum_probs=34.7

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT  269 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~  269 (324)
                      .+++++.|+++||++|+.+.|.+.++..+ +..  ++.|..++..
T Consensus        25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~-~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKT-APQ--DVVLKQVPIA   66 (195)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHT-CCT--TEEEEEEECC
T ss_pred             CCeEEEEEECCCCccHHHhhHHHHHHHHH-CCC--CeEEEEEecc
Confidence            45699999999999999999999999854 444  6788887764

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.12  E-value=3.4e-06  Score=64.94  Aligned_cols=106  Identities=12%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             eeEecccc--ccccc-cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------
Q psy14086        211 VVSLTSEN--FNDVI-KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------  271 (324)
Q Consensus       211 v~~l~~~~--~~~~~-~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------  271 (324)
                      +...+++.  +.++. .++++++.|| +.||++|....|.++++..++...  ++.++.++.+..               
T Consensus        16 l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~--~v~vv~is~d~~~~~~~~~~~~~~~fp   93 (164)
T 4gqc_A           16 LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA--NAEVLAISVDSPWCLKKFKDENRLAFN   93 (164)
T ss_dssp             EEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS--SSEEEEEESSCHHHHHHHHHHTTCCSE
T ss_pred             eECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc--CceEEEecCCCHHHHHHHHHhcCcccc
Confidence            44444443  33444 3567888888 999999999999998888664433  577777776541               


Q ss_pred             ----cchhhhhhcCCC----------ccceEEEE-ecCeeeeeecC-----CCCHHHHHHHHHhhcc
Q psy14086        272 ----LSKDLCNQEGVD----------GFPSIYVY-KNGVRTAEYNG-----SRDLEELYQFILKHKV  318 (324)
Q Consensus       272 ----~~~~~~~~~~i~----------~~P~l~~~-~~g~~~~~~~g-----~~~~~~l~~fi~~~~~  318 (324)
                          .+..+.+.||+.          ..|+.+++ ++|+....+.+     ..+.+++.+-|++..+
T Consensus        94 ~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A           94 LLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             eeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence                123566677763          35777777 46766544332     2467888888876544

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.09  E-value=1.1e-05  Score=66.29  Aligned_cols=95  Identities=9%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             cccc-cCCc-EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-------------------------c
Q psy14086        220 NDVI-KSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-------------------------L  272 (324)
Q Consensus       220 ~~~~-~~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-------------------------~  272 (324)
                      .+++ .++. +++.|++.||+.|....+.+.++..++...  ++.++.++++..                         .
T Consensus        27 ~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~--gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~  104 (249)
T 3a2v_A           27 DHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADP  104 (249)
T ss_dssp             HHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECT
T ss_pred             HHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC--CcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECC
Confidence            4443 4554 566789999999999999999998775444  578888877541                         1


Q ss_pred             chhhhhhcCCC-------ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHhh
Q psy14086        273 SKDLCNQEGVD-------GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILKH  316 (324)
Q Consensus       273 ~~~~~~~~~i~-------~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~~  316 (324)
                      ...+.+.|++.       .+|+++++ ++|+.+..+.|.    ++.+++.+.|...
T Consensus       105 ~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          105 QGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             TSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             chHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence            23577788886       89999888 577765554443    4789999988764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.09  E-value=2.2e-05  Score=60.20  Aligned_cols=86  Identities=6%  Similarity=0.066  Sum_probs=60.7

Q ss_pred             cCCCEEEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i  151 (324)
                      ..++++|.||+ .||++|....+.++++++++ .  ++.++.|..+.                       ...+++.||+
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~--~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  117 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D--NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCC
Confidence            34567899995 99999999999999999998 4  57776665431                       1235555666


Q ss_pred             c----c--cceEEEEeC-CeEeeeecCC-----CCHHHHHHHHHh
Q psy14086        152 K----S--YPTLLWIES-GKKLDKFQGS-----RTLETLVNYVSK  184 (324)
Q Consensus       152 ~----~--~P~~~~~~~-g~~~~~~~g~-----~~~~~i~~fi~~  184 (324)
                      .    +  .|+.++++. |+....+.|.     .+.+++.+.|++
T Consensus       118 ~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            5    2  389999875 7666666542     345778777764

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.09  E-value=2.5e-05  Score=64.03  Aligned_cols=91  Identities=10%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             cCCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .++.++|.||+ .||+.|....|.+.++..++...  ++.++.|+.+..                          ....+
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~--gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v  153 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI--NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQI  153 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHH
Confidence            45789999999 99999999999999999775433  577777776641                          11245


Q ss_pred             hhhcCCC------ccceEEEE-ecCeeeeeecC----CCCHHHHHHHHHhh
Q psy14086        277 CNQEGVD------GFPSIYVY-KNGVRTAEYNG----SRDLEELYQFILKH  316 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~~  316 (324)
                      .+.|++.      .+|+.+++ ++|+.+..+.+    ..+.+++.+.|...
T Consensus       154 ~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          154 SKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            6677876      58999888 47776555444    24678888887653

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.09  E-value=2e-05  Score=60.74  Aligned_cols=82  Identities=11%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhh-hhHhHHHHHHHhhcCCCCe-EEEEEecCCc---------------------cch
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKR-LAPTWEELGTKLLDNKHGI-VIAKVDCTQE---------------------LSK  274 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~-~~~~~~~~a~~~~~~~~~~-~~~~id~~~~---------------------~~~  274 (324)
                      +.++..+++++|.|| +.||++|+. ..|.++++..++...  ++ .++.|+.+..                     ...
T Consensus        25 L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~--gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~  102 (167)
T 2wfc_A           25 MAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK--GVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGG  102 (167)
T ss_dssp             HHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT--TCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTS
T ss_pred             HHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCC
Confidence            334435667888876 999999999 999999988665443  56 6777765541                     123


Q ss_pred             hhhhhcCCCcc-----------ceEEEEecCeeeeeecC
Q psy14086        275 DLCNQEGVDGF-----------PSIYVYKNGVRTAEYNG  302 (324)
Q Consensus       275 ~~~~~~~i~~~-----------P~l~~~~~g~~~~~~~g  302 (324)
                      .+.+.|++...           |+.+++++|+.+..+.+
T Consensus       103 ~~~~~~gv~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~  141 (167)
T 2wfc_A          103 AFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKVNVE  141 (167)
T ss_dssp             HHHHHTTCEECCHHHHSSCEECCEEEEEETTEEEEEEEC
T ss_pred             cHHHHcCCccccccccCcccceEEEEEEeCCEEEEEEec
Confidence            45566777543           87665588877655444

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.09  E-value=7.7e-06  Score=59.16  Aligned_cols=70  Identities=9%  Similarity=0.300  Sum_probs=48.4

Q ss_pred             hhHHHHhcCCCEEEEEeCCCCHhHhhH-HHHHHHHHHhcCCCCCeEEEEeccccch-------hhhhhCCccccceEEEE
Q psy14086         89 ESFEKYVSLGNHFVKFYAPWCGHCQSL-APVWQELASHFKTEEDVSIAKIDCTQHR-------SICQSFDIKSYPTLLWI  160 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i~~~P~~~~~  160 (324)
                      +.+++.+.... ++.|+++||++|+.+ .+.+.++..   .  .+.|..+|++.++       .+.+.+|+.++|++  |
T Consensus        16 ~~~~~~i~~~~-Vvvf~~~~Cp~C~~alk~~L~~~~~---~--~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--f   87 (118)
T 3c1r_A           16 KHVKDLIAENE-IFVASKTYCPYCHAALNTLFEKLKV---P--RSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--Y   87 (118)
T ss_dssp             HHHHHHHHHSS-EEEEECSSCHHHHHHHHHHHTTSCC---C--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred             HHHHHHHccCc-EEEEEcCCCcCHHHHHHHHHHHcCC---C--CCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--E
Confidence            44555554444 666999999999998 777765431   1  3667777776543       57888999999987  3


Q ss_pred             eCCeEe
Q psy14086        161 ESGKKL  166 (324)
Q Consensus       161 ~~g~~~  166 (324)
                      .+|+.+
T Consensus        88 i~g~~i   93 (118)
T 3c1r_A           88 INGKHI   93 (118)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            467554

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.08  E-value=9.7e-06  Score=55.35  Aligned_cols=68  Identities=15%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhC-CccccceEEEEeCCeEeeeecCCCCHH
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSF-DIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~-~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      .++.|+++||++|+.+.+.+++..        +.|..+|++  ....+.+.+ ++.++|++++  +|+.+    |  ..+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~--------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~~i----~--g~~   70 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG--------VKYTDIDASTSLRQEMVQRANGRNTFPQIFI--GDYHV----G--GCD   70 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT--------CCEEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTEEC----C--SHH
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCEEE----e--ChH
Confidence            377899999999999998888753        456677776  556788888 9999999853  66433    2  334


Q ss_pred             HHHHHHH
Q psy14086        177 TLVNYVS  183 (324)
Q Consensus       177 ~i~~fi~  183 (324)
                      .|.++++
T Consensus        71 ~i~~~~~   77 (89)
T 2klx_A           71 DLYALEN   77 (89)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.08  E-value=2.4e-05  Score=60.18  Aligned_cols=87  Identities=9%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------c-chhhhhhcC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------L-SKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~-~~~~~~~~~  281 (324)
                      .+++++|.|| +.||++|....|.+.++..+     .++.++.++.+..                    . ...+.+.|+
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g  119 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-----EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYG  119 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-----TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHT
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-----CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhC
Confidence            4578889998 78999999999999988744     2567777776540                    1 235566677


Q ss_pred             CCc------cceEEEE-ecCeeeeeecC-----CCCHHHHHHHHHh
Q psy14086        282 VDG------FPSIYVY-KNGVRTAEYNG-----SRDLEELYQFILK  315 (324)
Q Consensus       282 i~~------~P~l~~~-~~g~~~~~~~g-----~~~~~~l~~fi~~  315 (324)
                      +..      .|+.+++ ++|+.+..+.+     ..+.+++.+.|++
T Consensus       120 v~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          120 VVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             CEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             CccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            764      7999888 47776554322     2456777777754

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.07  E-value=1.1e-05  Score=55.33  Aligned_cols=76  Identities=18%  Similarity=0.351  Sum_probs=54.1

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh-----cCCCccceEEEEecCeeeeeecC
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ-----EGVDGFPSIYVYKNGVRTAEYNG  302 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~-----~~i~~~P~l~~~~~g~~~~~~~g  302 (324)
                      .++.|..+||++|......|.+.         ++.|-.+|++.  +++..+.     -|..++|+|++ .+|...   .|
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~---------gi~y~~idi~~--d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l---~~   69 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN---------RIAYDEVDIEH--NRAAAEFVGSVNGGNRTVPTVKF-ADGSTL---TN   69 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT---------TCCCEEEETTT--CHHHHHHHHHHSSSSSCSCEEEE-TTSCEE---ES
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc---------CCceEEEEcCC--CHHHHHHHHHHcCCCCEeCEEEE-eCCEEE---eC
Confidence            46789999999999988777653         36677888877  5543332     26778999844 666443   34


Q ss_pred             CCCHHHHHHHHHhhccc
Q psy14086        303 SRDLEELYQFILKHKVE  319 (324)
Q Consensus       303 ~~~~~~l~~fi~~~~~~  319 (324)
                       .+.++|.++|.+..+-
T Consensus        70 -~~~~el~~~L~el~gL   85 (92)
T 2lqo_A           70 -PSADEVKAKLVKIAGL   85 (92)
T ss_dssp             -CCHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHHhcCC
Confidence             4788999999887653

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.07  E-value=1.1e-05  Score=61.88  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             hcCCCEEEEEe-CCCCHhHh-hHHHHHHHHHHhcCCCCCeE-EEEeccc-----------------------cchhhhhh
Q psy14086         95 VSLGNHFVKFY-APWCGHCQ-SLAPVWQELASHFKTEEDVS-IAKIDCT-----------------------QHRSICQS  148 (324)
Q Consensus        95 ~~~~~~~v~f~-~~~c~~c~-~~~~~~~~la~~~~~~~~i~-~~~vd~~-----------------------~~~~~~~~  148 (324)
                      ...++++|.|| +.||++|. ...+.+.+++++++.. ++. ++.|..+                       .+..+++.
T Consensus        33 ~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  111 (162)
T 1tp9_A           33 VAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHA  111 (162)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHH
T ss_pred             hCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHH
Confidence            34567889999 89999999 8999999999988642 344 4444332                       12346666


Q ss_pred             CCcc-----------ccceEEEEeCCeEeeeecCC
Q psy14086        149 FDIK-----------SYPTLLWIESGKKLDKFQGS  172 (324)
Q Consensus       149 ~~i~-----------~~P~~~~~~~g~~~~~~~g~  172 (324)
                      ||+.           ..|+.+++++|+....+.|.
T Consensus       112 ~gv~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A          112 LGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             TTCEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             cCcccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            7765           26888888866655445443

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.06  E-value=2.4e-05  Score=55.26  Aligned_cols=67  Identities=15%  Similarity=0.299  Sum_probs=47.9

Q ss_pred             hhHHHHhcCCCEEEEEeC-----CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEE
Q psy14086         89 ESFEKYVSLGNHFVKFYA-----PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLW  159 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~  159 (324)
                      +.+.+.+...+++ .|++     +||++|+.+.+.|.++.        +.|..+|++.++.    +.+.+|..++|+++ 
T Consensus         8 ~~~~~~i~~~~vv-vf~~g~~~~~~C~~C~~~~~~L~~~~--------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~-   77 (105)
T 2yan_A            8 ERLKVLTNKASVM-LFMKGNKQEAKCGFSKQILEILNSTG--------VEYETFDILEDEEVRQGLKAYSNWPTYPQLY-   77 (105)
T ss_dssp             HHHHHHHTSSSEE-EEESBCSSSBCTTHHHHHHHHHHHHT--------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE-
T ss_pred             HHHHHHhccCCEE-EEEecCCCCCCCccHHHHHHHHHHCC--------CCeEEEECCCCHHHHHHHHHHHCCCCCCeEE-
Confidence            4566667666644 4777     99999999999988763        5566777776654    45567999999884 


Q ss_pred             EeCCeEe
Q psy14086        160 IESGKKL  166 (324)
Q Consensus       160 ~~~g~~~  166 (324)
                       .+|+.+
T Consensus        78 -i~g~~i   83 (105)
T 2yan_A           78 -VKGELV   83 (105)
T ss_dssp             -ETTEEE
T ss_pred             -ECCEEE
Confidence             366543

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.05  E-value=1.7e-05  Score=60.90  Aligned_cols=79  Identities=13%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             ccCCcEEEEEe-CCCChhhh-hhhHhHHHHHHHhhcCCCCeE-EEEEecCCc---------------------cchhhhh
Q psy14086        223 IKSGTVFIKFF-APWCGHCK-RLAPTWEELGTKLLDNKHGIV-IAKVDCTQE---------------------LSKDLCN  278 (324)
Q Consensus       223 ~~~~~~~v~f~-~~~c~~C~-~~~~~~~~~a~~~~~~~~~~~-~~~id~~~~---------------------~~~~~~~  278 (324)
                      ..+++++|.|| +.||++|. ...|.+.++..++...  ++. ++.|+.+..                     .+..+.+
T Consensus        33 ~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~--~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  110 (162)
T 1tp9_A           33 VAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--GVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTH  110 (162)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--TCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHH
T ss_pred             hCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHH
Confidence            45678999999 89999999 8999999988665433  455 555554430                     1234566


Q ss_pred             hcCCC-----------ccceEEEEecCeeeeeecCC
Q psy14086        279 QEGVD-----------GFPSIYVYKNGVRTAEYNGS  303 (324)
Q Consensus       279 ~~~i~-----------~~P~l~~~~~g~~~~~~~g~  303 (324)
                      .||+.           ..|+.+++.+|+....+.|.
T Consensus       111 ~~gv~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A          111 ALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             HTTCEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             HcCcccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            77775           27888888877665544443

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.05  E-value=3.7e-06  Score=59.51  Aligned_cols=66  Identities=17%  Similarity=0.384  Sum_probs=47.0

Q ss_pred             cccccccCCcEEEEEeC-----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchh----hhhhcCCCccceE
Q psy14086        218 NFNDVIKSGTVFIKFFA-----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD----LCNQEGVDGFPSI  288 (324)
Q Consensus       218 ~~~~~~~~~~~~v~f~~-----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~P~l  288 (324)
                      .+++.+...+++| |+.     +||++|+.+.+.+.++.         +.|..+|++.  +++    +.+.+++.++|++
T Consensus         9 ~~~~~i~~~~vvv-f~~g~~~~~~C~~C~~~~~~L~~~~---------i~~~~vdi~~--~~~~~~~l~~~~g~~~vP~v   76 (105)
T 2yan_A            9 RLKVLTNKASVML-FMKGNKQEAKCGFSKQILEILNSTG---------VEYETFDILE--DEEVRQGLKAYSNWPTYPQL   76 (105)
T ss_dssp             HHHHHHTSSSEEE-EESBCSSSBCTTHHHHHHHHHHHHT---------CCCEEEEGGG--CHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHhccCCEEE-EEecCCCCCCCccHHHHHHHHHHCC---------CCeEEEECCC--CHHHHHHHHHHHCCCCCCeE
Confidence            3555565556554 777     99999999999987763         4567778776  444    4455789999998


Q ss_pred             EEEecCeee
Q psy14086        289 YVYKNGVRT  297 (324)
Q Consensus       289 ~~~~~g~~~  297 (324)
                        |.+|+.+
T Consensus        77 --~i~g~~i   83 (105)
T 2yan_A           77 --YVKGELV   83 (105)
T ss_dssp             --EETTEEE
T ss_pred             --EECCEEE
Confidence              4577654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.02  E-value=6.3e-05  Score=58.72  Aligned_cols=89  Identities=13%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----------------------------------
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----------------------------------  142 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----------------------------------  142 (324)
                      ..+.+|.|+.-.|++|+++.+.+.++.+++....++.+..+.....                                  
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~  100 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR  100 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999998743444433332111                                  


Q ss_pred             ---------------------------------------hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        143 ---------------------------------------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       143 ---------------------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                                                             ...++++||+++|++++  +|+......+..+.+++.+-|+
T Consensus       101 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~  178 (184)
T 4dvc_A          101 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVN  178 (184)
T ss_dssp             CCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHH
Confidence                                                   45667889999999887  7765555566788999998888


Q ss_pred             hhhC
Q psy14086        184 KMKG  187 (324)
Q Consensus       184 ~~~~  187 (324)
                      .++.
T Consensus       179 ~Ll~  182 (184)
T 4dvc_A          179 YLLT  182 (184)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            7765

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.01  E-value=4.3e-05  Score=58.71  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=53.7

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------c-chhhhhhcC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------L-SKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~-~~~~~~~~~  281 (324)
                      .+++++|.|| +.||++|....|.+.++..++  .  ++.++.|+.+..                    . ...+.+.|+
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g  117 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S--NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLG  117 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T--TEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhC
Confidence            4568999998 899999999999999998664  3  577777765530                    0 234556677


Q ss_pred             CCc---------cceEEEEe-cCeeeeeecC
Q psy14086        282 VDG---------FPSIYVYK-NGVRTAEYNG  302 (324)
Q Consensus       282 i~~---------~P~l~~~~-~g~~~~~~~g  302 (324)
                      +..         .|+.+++. +|+.+..+.|
T Consensus       118 v~~~~~~~~g~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A          118 VDIQTGPLAGLTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             CEECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             ceecccccCCccceeEEEEcCCCEEEEEEeC
Confidence            643         48998884 7877666654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.01  E-value=2.1e-05  Score=60.66  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             HHHHhcCCCEEEEEe-CCCCHhHhh-HHHHHHHHHHhcCCCCCe-EEEEecccc-----------------------chh
Q psy14086         91 FEKYVSLGNHFVKFY-APWCGHCQS-LAPVWQELASHFKTEEDV-SIAKIDCTQ-----------------------HRS  144 (324)
Q Consensus        91 f~~~~~~~~~~v~f~-~~~c~~c~~-~~~~~~~la~~~~~~~~i-~~~~vd~~~-----------------------~~~  144 (324)
                      +.++...+++++.|| +.||++|.. ..|.|++++++++.. .+ .++.|..+.                       ...
T Consensus        25 L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~  103 (167)
T 2wfc_A           25 MAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK-GVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGA  103 (167)
T ss_dssp             HHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT-TCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSH
T ss_pred             HHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCc
Confidence            344434556777776 999999999 999999999988642 46 666655432                       134


Q ss_pred             hhhhCCcccc-----------ceEEEEeCCeEeeeecC
Q psy14086        145 ICQSFDIKSY-----------PTLLWIESGKKLDKFQG  171 (324)
Q Consensus       145 ~~~~~~i~~~-----------P~~~~~~~g~~~~~~~g  171 (324)
                      +++.||+...           |+.+++++|+....+.+
T Consensus       104 ~~~~~gv~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~  141 (167)
T 2wfc_A          104 FTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKVNVE  141 (167)
T ss_dssp             HHHHTTCEECCHHHHSSCEECCEEEEEETTEEEEEEEC
T ss_pred             HHHHcCCccccccccCcccceEEEEEEeCCEEEEEEec
Confidence            5566676533           77666666766554444

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.00  E-value=0.00012  Score=56.60  Aligned_cols=60  Identities=12%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNKHGIVIAKVDCT  269 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~  269 (324)
                      .++..+++.+. +-..+++++|.||.+||+ .|....+.+.++.+.+.....++.++.|.++
T Consensus        16 ~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           16 QFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             EEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             EEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            34444555432 223567899999999996 7999989888887554444446777777654

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.00  E-value=6.3e-06  Score=56.30  Aligned_cols=59  Identities=22%  Similarity=0.513  Sum_probs=43.8

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhc-CCCccceEEEEecCeee
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE-GVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~-~i~~~P~l~~~~~g~~~  297 (324)
                      .++.|+++||++|+.+.+.+++..         +.|..+|++....+++.+.+ ++.++|+++  .+|+.+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~---------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i   66 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG---------VKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV   66 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT---------CCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC---------CCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence            467899999999999998887753         44667777611156777888 999999984  466543

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.99  E-value=5.5e-05  Score=59.25  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=58.6

Q ss_pred             ccccccCCc-EEEEEeCCCChhhhh-hhHhHHHHHHHhhcCCCCeE-EEEEecCCc---------------------cch
Q psy14086        219 FNDVIKSGT-VFIKFFAPWCGHCKR-LAPTWEELGTKLLDNKHGIV-IAKVDCTQE---------------------LSK  274 (324)
Q Consensus       219 ~~~~~~~~~-~~v~f~~~~c~~C~~-~~~~~~~~a~~~~~~~~~~~-~~~id~~~~---------------------~~~  274 (324)
                      +.+...+++ +++.|++.||++|+. ..|.+.+++.++...  ++. ++.|+.+..                     .+.
T Consensus        50 L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~--gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~  127 (184)
T 3uma_A           50 TELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR--GVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNA  127 (184)
T ss_dssp             HHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTC
T ss_pred             HHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCch
Confidence            334344565 555566999999999 699999998675444  455 666666541                     123


Q ss_pred             hhhhhcCCC-----------ccceEEEEecCeeeeeecC----CCCHHHHHHHHH
Q psy14086        275 DLCNQEGVD-----------GFPSIYVYKNGVRTAEYNG----SRDLEELYQFIL  314 (324)
Q Consensus       275 ~~~~~~~i~-----------~~P~l~~~~~g~~~~~~~g----~~~~~~l~~fi~  314 (324)
                      .+.+.||+.           ..|+.+++++|+....+.|    ..+...+.+.|+
T Consensus       128 ~va~~yGv~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~  182 (184)
T 3uma_A          128 AFTKAIGMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLE  182 (184)
T ss_dssp             HHHHHTTCEEEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHH
T ss_pred             HHHHHcCCceeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHh
Confidence            466677774           2465666688877655544    344455555544

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.99  E-value=1.7e-05  Score=54.41  Aligned_cols=75  Identities=17%  Similarity=0.437  Sum_probs=54.2

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC-----CccccceEEEEeCCeEeeeecCCCC
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF-----DIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~-----~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      .++.|.++||++|......|.+.        .+.|-.+|++.++...+.+     |.+++|++++ .+|...    +..+
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l----~~~~   71 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL----TNPS   71 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE----ESCC
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE----eCCC
Confidence            47889999999999988777652        4677777877665443332     7888997654 455433    2358


Q ss_pred             HHHHHHHHHhhhC
Q psy14086        175 LETLVNYVSKMKG  187 (324)
Q Consensus       175 ~~~i~~fi~~~~~  187 (324)
                      .++|.+++.+..+
T Consensus        72 ~~el~~~L~el~g   84 (92)
T 2lqo_A           72 ADEVKAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            8999999988765

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.98  E-value=1.4e-05  Score=60.12  Aligned_cols=83  Identities=24%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------------------  270 (324)
                      +..++.|..++|++|+.+.+.+.++.        ++.+...+..-                                   
T Consensus        15 ~~~vv~f~D~~Cp~C~~~~~~l~~l~--------~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~   86 (147)
T 3gv1_A           15 KLKVAVFSDPDCPFCKRLEHEFEKMT--------DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPV   86 (147)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHTTCC--------SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCT
T ss_pred             CEEEEEEECCCChhHHHHHHHHhhcC--------ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence            46899999999999999988775441        34444333211                                   


Q ss_pred             ---------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcccC
Q psy14086        271 ---------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       271 ---------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                               ..+.++..++||+++||+++ .+|+   .+.|..+.+.|.++|.+..++.
T Consensus        87 ~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~~~~  141 (147)
T 3gv1_A           87 GGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQQEG  141 (147)
T ss_dssp             TCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence                     01235667889999999987 6675   3579899999999999887754

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.96  E-value=3.3e-05  Score=52.49  Aligned_cols=74  Identities=12%  Similarity=0.133  Sum_probs=53.6

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCc-----cccceEEEEeCCeEeeeec
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDI-----KSYPTLLWIESGKKLDKFQ  170 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i-----~~~P~~~~~~~g~~~~~~~  170 (324)
                      .++.|+++||++|+.....+.++..      .+.+..+|...+    ..+.+.+|.     .++|++++  +|+.+    
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~~i------~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i----   72 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEENNI------AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI----   72 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTC------CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE----
T ss_pred             EEEEEEcCCChhHHHHHHHHHHcCC------CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE----
Confidence            4788999999999998887766431      356666666544    457777888     89998864  66543    


Q ss_pred             CCCCHHHHHHHHHhhhC
Q psy14086        171 GSRTLETLVNYVSKMKG  187 (324)
Q Consensus       171 g~~~~~~i~~fi~~~~~  187 (324)
                      |  ..+++.+++++.++
T Consensus        73 ~--g~~~i~~~~~~~~~   87 (89)
T 3msz_A           73 G--GFTELKANADKILN   87 (89)
T ss_dssp             E--SHHHHHHTHHHHTT
T ss_pred             e--ChHHHHHHHHHHhc
Confidence            2  56788888887765

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=97.96  E-value=3.9e-05  Score=59.01  Aligned_cols=85  Identities=9%  Similarity=0.112  Sum_probs=59.0

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i  151 (324)
                      ..++++|.|| +.||++|....+.+++++++ +   ++.++.|..+.                       ...+++.||+
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~---~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-E---EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T---TSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-C---CCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCC
Confidence            3557888898 78999999999999999887 3   46666555431                       2345566676


Q ss_pred             cc------cceEEEEeC-CeEeeeec-----CCCCHHHHHHHHHh
Q psy14086        152 KS------YPTLLWIES-GKKLDKFQ-----GSRTLETLVNYVSK  184 (324)
Q Consensus       152 ~~------~P~~~~~~~-g~~~~~~~-----g~~~~~~i~~fi~~  184 (324)
                      ..      .|+.++++. |+....+.     +..+.+++.+.|++
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            64      799999976 66555433     23567788777754

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.95  E-value=4.5e-05  Score=63.00  Aligned_cols=90  Identities=9%  Similarity=0.211  Sum_probs=64.3

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .++.++|+|| +.||+.|....|.|.++..++...  ++.++.|+.+..                          ....+
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~--gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~v  167 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI  167 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHH
Confidence            4568899998 999999999999999999775433  577777776641                          01245


Q ss_pred             hhhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        277 CNQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      .+.|++.      .+|+++++. +|+.+..+.+    .++.+++.+.|..
T Consensus       168 a~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          168 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            6667774      479988884 6776555444    3567888887764

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.95  E-value=2.5e-05  Score=64.59  Aligned_cols=89  Identities=11%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----------------------------hhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----------------------------RSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----------------------------~~~~~  147 (324)
                      .+.++|.|| +.||++|....+.|.+++++|+.. .+.++.|.++..                            ..+++
T Consensus        91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~-gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            456788898 999999999999999999999753 466666655421                            34566


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                      .||+.      .+|++++++. |.....+.+    ..+.+++.+.|....
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq  219 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  219 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhc
Confidence            67774      4799999976 655554444    356788888887653

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.92  E-value=9e-05  Score=58.54  Aligned_cols=40  Identities=28%  Similarity=0.592  Sum_probs=34.0

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC  139 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~  139 (324)
                      +..++.|++.||++|+.+.+.+.++.+++.+  ++.|..+..
T Consensus        25 ~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~   64 (193)
T 3hz8_A           25 KVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHV   64 (193)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEEC
T ss_pred             CcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecC
Confidence            3469999999999999999999999999877  677765554

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.92  E-value=5.4e-05  Score=59.30  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             HHHHhcCCCE-EEEEeCCCCHhHhh-HHHHHHHHHHhcCCCCCeE-EEEecccc-----------------------chh
Q psy14086         91 FEKYVSLGNH-FVKFYAPWCGHCQS-LAPVWQELASHFKTEEDVS-IAKIDCTQ-----------------------HRS  144 (324)
Q Consensus        91 f~~~~~~~~~-~v~f~~~~c~~c~~-~~~~~~~la~~~~~~~~i~-~~~vd~~~-----------------------~~~  144 (324)
                      +.+....+++ ++.|++.||++|.. ..|.|++++++|+.. .+. ++.|+.+.                       +..
T Consensus        50 L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~  128 (184)
T 3uma_A           50 TELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR-GVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAA  128 (184)
T ss_dssp             HHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCH
T ss_pred             HHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchH
Confidence            4443344544 55567999999999 799999999999753 354 55555432                       134


Q ss_pred             hhhhCCcc-----------ccceEEEEeCCeEeeeecC
Q psy14086        145 ICQSFDIK-----------SYPTLLWIESGKKLDKFQG  171 (324)
Q Consensus       145 ~~~~~~i~-----------~~P~~~~~~~g~~~~~~~g  171 (324)
                      +++.||+.           ..|+.+++++|.....+.+
T Consensus       129 va~~yGv~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~  166 (184)
T 3uma_A          129 FTKAIGMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIE  166 (184)
T ss_dssp             HHHHTTCEEEEGGGTCEEEECCEEEEEETTEEEEEEEC
T ss_pred             HHHHcCCceeccccCCcccceeEEEEECCCEEEEEEEe
Confidence            66677775           2466777787876655544

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.91  E-value=4.3e-05  Score=58.75  Aligned_cols=72  Identities=7%  Similarity=0.177  Sum_probs=51.7

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCcc
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDIK  152 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i~  152 (324)
                      .++++|.|| +.||++|....+.+.++++++ .  ++.++.|..+.                       ...+++.||+.
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~  119 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S--NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVD  119 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T--TEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCE
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCce
Confidence            456789998 899999999999999999998 3  56666655431                       23455566664


Q ss_pred             c---------cceEEEEeC-CeEeeeecC
Q psy14086        153 S---------YPTLLWIES-GKKLDKFQG  171 (324)
Q Consensus       153 ~---------~P~~~~~~~-g~~~~~~~g  171 (324)
                      .         .|+.++++. |+....+.|
T Consensus       120 ~~~~~~~g~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A          120 IQTGPLAGLTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             ECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             ecccccCCccceeEEEEcCCCEEEEEEeC
Confidence            3         488888875 666666653

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.91  E-value=5.4e-06  Score=63.82  Aligned_cols=96  Identities=10%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             HHHHhc-CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---------------------chhhhh
Q psy14086         91 FEKYVS-LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---------------------HRSICQ  147 (324)
Q Consensus        91 f~~~~~-~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---------------------~~~~~~  147 (324)
                      +.++.. .+++++.|| ++||++|....+.++++..+++.. .+.++.|..+.                     +..+++
T Consensus        26 Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~  104 (164)
T 4gqc_A           26 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  104 (164)
T ss_dssp             HHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHH
T ss_pred             HHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHH
Confidence            445543 456788887 999999999999999999888753 46666665432                     245667


Q ss_pred             hCCcc----------ccceEEEEeC-CeEeeeec-----CCCCHHHHHHHHHhhhC
Q psy14086        148 SFDIK----------SYPTLLWIES-GKKLDKFQ-----GSRTLETLVNYVSKMKG  187 (324)
Q Consensus       148 ~~~i~----------~~P~~~~~~~-g~~~~~~~-----g~~~~~~i~~fi~~~~~  187 (324)
                      .||+.          ..|+.++++. |.....+.     +..+.+++.+.+++..+
T Consensus       105 ~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          105 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             HcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence            77763          3678888876 65544443     23478888888877654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.90  E-value=4.5e-06  Score=60.43  Aligned_cols=70  Identities=19%  Similarity=0.302  Sum_probs=47.6

Q ss_pred             ccccccCCcEEEEEeCCCChhhhhh-hHhHHHHHHHhhcCCCCeEEEEEecCCccc-----hhhhhhcCCCccceEEEEe
Q psy14086        219 FNDVIKSGTVFIKFFAPWCGHCKRL-APTWEELGTKLLDNKHGIVIAKVDCTQELS-----KDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~~~c~~C~~~-~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~i~~~P~l~~~~  292 (324)
                      +++.+... .++.|+++||++|+.+ .+.+.++..      ..+.|..+|++....     .++.+.+++.++|++  |.
T Consensus        18 ~~~~i~~~-~Vvvf~~~~Cp~C~~alk~~L~~~~~------~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi   88 (118)
T 3c1r_A           18 VKDLIAEN-EIFVASKTYCPYCHAALNTLFEKLKV------PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YI   88 (118)
T ss_dssp             HHHHHHHS-SEEEEECSSCHHHHHHHHHHHTTSCC------CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred             HHHHHccC-cEEEEEcCCCcCHHHHHHHHHHHcCC------CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence            44444333 3566999999999998 777765541      136677788776211     257778999999987  56


Q ss_pred             cCeee
Q psy14086        293 NGVRT  297 (324)
Q Consensus       293 ~g~~~  297 (324)
                      +|+.+
T Consensus        89 ~g~~i   93 (118)
T 3c1r_A           89 NGKHI   93 (118)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            77654

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.90  E-value=2.1e-05  Score=54.84  Aligned_cols=58  Identities=12%  Similarity=0.224  Sum_probs=42.4

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh----c-CCCccceEEEEecCeee
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ----E-GVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~----~-~i~~~P~l~~~~~g~~~  297 (324)
                      .-+++|+++||++|+.+.+.|+++.         +.|..+|++.  +++..+.    . +..++|++  |.+|+.+
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~~---------i~y~~idI~~--~~~~~~~l~~~~~g~~~vP~i--fi~g~~i   78 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRKG---------VEFQEYCIDG--DNEAREAMAARANGKRSLPQI--FIDDQHI   78 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHT---------CCCEEEECTT--CHHHHHHHHHHTTTCCCSCEE--EETTEEE
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHCC---------CCCEEEEcCC--CHHHHHHHHHHhCCCCCCCEE--EECCEEE
Confidence            4677899999999999999988764         4456677776  4444333    3 88899987  5577544

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.90  E-value=8.4e-05  Score=57.56  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             ccccccCCcEEEEE-eCCCChhhh-hhhHhHHHHHHHhhcCCCCeEEEE-EecCCc---------------------cch
Q psy14086        219 FNDVIKSGTVFIKF-FAPWCGHCK-RLAPTWEELGTKLLDNKHGIVIAK-VDCTQE---------------------LSK  274 (324)
Q Consensus       219 ~~~~~~~~~~~v~f-~~~~c~~C~-~~~~~~~~~a~~~~~~~~~~~~~~-id~~~~---------------------~~~  274 (324)
                      +.+...+++++|.| ++.||+.|. ...|.+.+++.++...  ++.++. +..+..                     ...
T Consensus        37 L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~--gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~  114 (173)
T 3mng_A           37 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK--GVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTG  114 (173)
T ss_dssp             HHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTC
T ss_pred             hHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCCh
Confidence            33434556555555 599999999 5889999998675444  344443 554430                     123


Q ss_pred             hhhhhcCCC-------------ccceEEEEecCeeeeeecCC----CCHHHHHHHHH
Q psy14086        275 DLCNQEGVD-------------GFPSIYVYKNGVRTAEYNGS----RDLEELYQFIL  314 (324)
Q Consensus       275 ~~~~~~~i~-------------~~P~l~~~~~g~~~~~~~g~----~~~~~l~~fi~  314 (324)
                      .+++.||+.             ..|+.+++.+|+....+.+.    ++.++..+.|.
T Consensus       115 ~va~~yGv~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~  171 (173)
T 3mng_A          115 AFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIIS  171 (173)
T ss_dssp             HHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHH
T ss_pred             HHHHHhCCCcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHH
Confidence            566677764             34888888877665444442    45666666554

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.89  E-value=6.3e-05  Score=50.19  Aligned_cols=68  Identities=9%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      ++.|+++||++|+.+.+.+.+..        +.|..+|++.+    ..+.+.+++.++|+++  .+|+.+.      ..+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~~--------i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~------g~~   66 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSKG--------VSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG------GYD   66 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT--------CCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE------SHH
T ss_pred             EEEEECCCChhHHHHHHHHHHCC--------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe------CHH
Confidence            67799999999999998887642        44455555543    2356678999999884  3665432      246


Q ss_pred             HHHHHHHh
Q psy14086        177 TLVNYVSK  184 (324)
Q Consensus       177 ~i~~fi~~  184 (324)
                      +|.+++++
T Consensus        67 ~i~~~~~~   74 (82)
T 1fov_A           67 DLYALDAR   74 (82)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            67777654

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.89  E-value=3.4e-05  Score=57.98  Aligned_cols=78  Identities=22%  Similarity=0.433  Sum_probs=58.9

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------------------------  139 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------------------------  139 (324)
                      ..++.|+.++|++|+++.+.++++     +  ++.+...+.                                       
T Consensus        16 ~~vv~f~D~~Cp~C~~~~~~l~~l-----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~   88 (147)
T 3gv1_A           16 LKVAVFSDPDCPFCKRLEHEFEKM-----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG   88 (147)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHTTC-----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred             EEEEEEECCCChhHHHHHHHHhhc-----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence            468999999999999999988654     2  344432211                                       


Q ss_pred             -------ccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        140 -------TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       140 -------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                             +++..+++++||+++|++++ .+|+   .+.|..+.+.|.++|.+...
T Consensus        89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHHH
Confidence                   12356778899999999998 5665   36799999999999988765

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.89  E-value=5.4e-05  Score=53.19  Aligned_cols=73  Identities=11%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---chhhh----hhCCccccceEEEEeCCeEeeeecC
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---HRSIC----QSFDIKSYPTLLWIESGKKLDKFQG  171 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---~~~~~----~~~~i~~~P~~~~~~~g~~~~~~~g  171 (324)
                      ..+++|+++||++|+.+.+.|.++...      +....+|...   ...+.    +..|..++|++++  +|.   .+.|
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~~i~------y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---~~ig   90 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDLGVD------FDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---KAIV   90 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHTBC------EEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---EEEE
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCC------cEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---EEEE
Confidence            347889999999999999998876422      3444444311   12232    3468999998876  331   3456


Q ss_pred             CCCHHHHHHHH
Q psy14086        172 SRTLETLVNYV  182 (324)
Q Consensus       172 ~~~~~~i~~fi  182 (324)
                      ..+.+.|.++|
T Consensus        91 g~~~~~l~~~L  101 (103)
T 3nzn_A           91 GFKEKEIRESL  101 (103)
T ss_dssp             SCCHHHHHHHT
T ss_pred             cCCHHHHHHHh
Confidence            78888888876

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.88  E-value=5.5e-05  Score=52.69  Aligned_cols=69  Identities=9%  Similarity=0.171  Sum_probs=46.6

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhh----C-CccccceEEEEeCCeEeeeecCCC
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQS----F-DIKSYPTLLWIESGKKLDKFQGSR  173 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~----~-~i~~~P~~~~~~~g~~~~~~~g~~  173 (324)
                      ..++.|+++||++|+.+.+.|++..        +.|..+|++.++...+.    . |..++|+++  -+|+.+    |  
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~~--------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~if--i~g~~i----g--   79 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRKG--------VEFQEYCIDGDNEAREAMAARANGKRSLPQIF--IDDQHI----G--   79 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHT--------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEEE--ETTEEE----E--
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHCC--------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE--ECCEEE----e--
Confidence            3478899999999999999988753        44556666655544443    3 889999874  366543    2  


Q ss_pred             CHHHHHHHHH
Q psy14086        174 TLETLVNYVS  183 (324)
Q Consensus       174 ~~~~i~~fi~  183 (324)
                      ..+++.++..
T Consensus        80 G~d~l~~~~~   89 (99)
T 3qmx_A           80 GCDDIYALDG   89 (99)
T ss_dssp             SHHHHHHHHH
T ss_pred             ChHHHHHHHH
Confidence            3355555554

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.85  E-value=4.6e-05  Score=50.87  Aligned_cols=70  Identities=14%  Similarity=0.349  Sum_probs=47.3

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEecCeeeeeecCCCCH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL  306 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~  306 (324)
                      ++.|+++||++|+.+.+.+++..         +.|..+|++..  ...++.+.+++.++|+++  .+|+.+   .|   .
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~~---------i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i---~g---~   65 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSKG---------VSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI---GG---Y   65 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT---------CCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE---ES---H
T ss_pred             EEEEECCCChhHHHHHHHHHHCC---------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE---eC---H
Confidence            57799999999999998887652         34555666551  112355678999999984  477543   22   3


Q ss_pred             HHHHHHHHh
Q psy14086        307 EELYQFILK  315 (324)
Q Consensus       307 ~~l~~fi~~  315 (324)
                      +.+.+++.+
T Consensus        66 ~~i~~~~~~   74 (82)
T 1fov_A           66 DDLYALDAR   74 (82)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            567776654

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.84  E-value=0.00018  Score=57.17  Aligned_cols=73  Identities=15%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------c-chhhhhhcC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------L-SKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------~-~~~~~~~~~  281 (324)
                      .+++++|.|| +.||+.|....|.+.++..++  .  ++.++.|+.+..                    . ...+.+.|+
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~--~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~yg  152 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E--NTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYG  152 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T--TEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTT
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C--CCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhC
Confidence            4578999998 679999999999999999664  3  577777776641                    1 234455666


Q ss_pred             CC---------ccceEEEE-ecCeeeeee
Q psy14086        282 VD---------GFPSIYVY-KNGVRTAEY  300 (324)
Q Consensus       282 i~---------~~P~l~~~-~~g~~~~~~  300 (324)
                      +.         ..|+.+++ ++|+.+..+
T Consensus       153 v~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          153 VAITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             CEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             ceeecccCCCccccEEEEECCCCeEEEEE
Confidence            64         25999888 577765544

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.84  E-value=9.9e-05  Score=60.09  Aligned_cols=96  Identities=10%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             HHHHhcCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------
Q psy14086         91 FEKYVSLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------  141 (324)
Q Consensus        91 f~~~~~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------  141 (324)
                      +.++..++.+++.|| +.||+.|....+.|.+++.+|+.. ++.++.|.++.                            
T Consensus        23 l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~-~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D  101 (233)
T 2v2g_A           23 FHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR-GVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIAD  101 (233)
T ss_dssp             HHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEEC
T ss_pred             HHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEEC
Confidence            444443336678887 899999999999999999988642 46666555431                            


Q ss_pred             -chhhhhhCCcc------------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhhC
Q psy14086        142 -HRSICQSFDIK------------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMKG  187 (324)
Q Consensus       142 -~~~~~~~~~i~------------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~~  187 (324)
                       ...+++.||+.            ..|+++++++ |+....+.+    .++.++|.+.|..+..
T Consensus       102 ~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq~  165 (233)
T 2v2g_A          102 ETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQL  165 (233)
T ss_dssp             TTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence             12355667764            4789999976 655544433    3578999998887653

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.83  E-value=7.2e-05  Score=53.47  Aligned_cols=69  Identities=20%  Similarity=0.425  Sum_probs=43.8

Q ss_pred             hhHHHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cch----hhhhhCCccccceEEEEeC
Q psy14086         89 ESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHR----SICQSFDIKSYPTLLWIES  162 (324)
Q Consensus        89 ~~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~----~~~~~~~i~~~P~~~~~~~  162 (324)
                      +.+.+.+...+ ++.|+++||++|+...+.|.++..      .+..+.+|..  ...    .+.+..|..++|+++  -+
T Consensus        10 ~~~~~~i~~~~-v~vy~~~~Cp~C~~~~~~L~~~~i------~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~if--i~   80 (113)
T 3rhb_A           10 ESIRKTVTENT-VVIYSKTWCSYCTEVKTLFKRLGV------QPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVF--VC   80 (113)
T ss_dssp             HHHHHHHHHSS-EEEEECTTCHHHHHHHHHHHHTTC------CCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEE--ET
T ss_pred             HHHHHHHhcCC-EEEEECCCChhHHHHHHHHHHcCC------CCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEE--EC
Confidence            34455555555 677999999999999988887532      2334444331  122    245556999999884  46


Q ss_pred             CeEe
Q psy14086        163 GKKL  166 (324)
Q Consensus       163 g~~~  166 (324)
                      |+.+
T Consensus        81 g~~i   84 (113)
T 3rhb_A           81 GKHI   84 (113)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            6544

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.82  E-value=5.4e-05  Score=53.18  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---cchhhh----hhcCCCccceEEEEecCeeeee
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---LSKDLC----NQEGVDGFPSIYVYKNGVRTAE  299 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---~~~~~~----~~~~i~~~P~l~~~~~g~~~~~  299 (324)
                      ..++.|+++||++|+.+.+.+.++.         +.+-.+|++..   +..++.    +..++.++|++++  +|+.   
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~~---------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~---   87 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDLG---------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEK---   87 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHT---------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTE---
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcC---------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCE---
Confidence            4577899999999999999988764         22344454431   012232    2358899999865  4422   


Q ss_pred             ecCCCCHHHHHHHH
Q psy14086        300 YNGSRDLEELYQFI  313 (324)
Q Consensus       300 ~~g~~~~~~l~~fi  313 (324)
                      +-|..+.+.|.++|
T Consensus        88 ~igg~~~~~l~~~L  101 (103)
T 3nzn_A           88 AIVGFKEKEIRESL  101 (103)
T ss_dssp             EEESCCHHHHHHHT
T ss_pred             EEEcCCHHHHHHHh
Confidence            23556888888765

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.82  E-value=5.8e-05  Score=59.69  Aligned_cols=83  Identities=17%  Similarity=0.382  Sum_probs=61.3

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--------------------------------------  140 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--------------------------------------  140 (324)
                      ..++.|+.+||++|..+.+.+.++.+++..  ++.|..+...                                      
T Consensus        24 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~~~  101 (195)
T 2znm_A           24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIR  101 (195)
T ss_dssp             EEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999999999876  5666544321                                      


Q ss_pred             ------------------------------------cchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        141 ------------------------------------QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       141 ------------------------------------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                                                          .+..+++.+||+++|++++  +|+..  ..|..+.+.+.+.|+.
T Consensus       102 ~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~~l~~~i~~  177 (195)
T 2znm_A          102 LENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV--GGKYR--VIFNNGFDGGVHTIKE  177 (195)
T ss_dssp             TTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEE--ECCCSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEEE--EcCCCCHHHHHHHHHH
Confidence                                                0123456789999999655  56533  4577788888888887


Q ss_pred             hhC
Q psy14086        185 MKG  187 (324)
Q Consensus       185 ~~~  187 (324)
                      .+.
T Consensus       178 ~l~  180 (195)
T 2znm_A          178 LVA  180 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.82  E-value=3.7e-05  Score=52.24  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCC-----CccceEEEEecCeeeeee
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGV-----DGFPSIYVYKNGVRTAEY  300 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i-----~~~P~l~~~~~g~~~~~~  300 (324)
                      .++.|+.+||++|+.+...+.++..       .+.+..+|....  ...++.+..+.     .++|++++  +|+.+   
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~~i-------~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i---   72 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEENNI-------AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI---   72 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTC-------CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE---
T ss_pred             EEEEEEcCCChhHHHHHHHHHHcCC-------CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE---
Confidence            4778999999999999888766531       345555555431  01456677777     89999954  66543   


Q ss_pred             cCCCCHHHHHHHHHhhcc
Q psy14086        301 NGSRDLEELYQFILKHKV  318 (324)
Q Consensus       301 ~g~~~~~~l~~fi~~~~~  318 (324)
                       |  ..+++.+++.+.++
T Consensus        73 -~--g~~~i~~~~~~~~~   87 (89)
T 3msz_A           73 -G--GFTELKANADKILN   87 (89)
T ss_dssp             -E--SHHHHHHTHHHHTT
T ss_pred             -e--ChHHHHHHHHHHhc
Confidence             2  25777777776654

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.81  E-value=0.00021  Score=57.88  Aligned_cols=96  Identities=10%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             HHHHhcCCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------
Q psy14086         91 FEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------  141 (324)
Q Consensus        91 f~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------  141 (324)
                      +.++..++. +++.|+++||+.|....+.+.+++.+|+.. ++.++.|.++.                            
T Consensus        25 l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil  103 (224)
T 1prx_A           25 FHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPII  103 (224)
T ss_dssp             HHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEE
T ss_pred             HHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCccee
Confidence            444443333 455668999999999999999999999753 46666555431                            


Q ss_pred             ---chhhhhhCCcc------------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhhC
Q psy14086        142 ---HRSICQSFDIK------------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMKG  187 (324)
Q Consensus       142 ---~~~~~~~~~i~------------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~~  187 (324)
                         ...+++.||+.            ..|+++++++ |+....+.+    .++.++|.+.|+.+..
T Consensus       104 ~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~~  169 (224)
T 1prx_A          104 DDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQL  169 (224)
T ss_dssp             ECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHHH
T ss_pred             ecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence               12356667763            3699999976 655555543    3578999998887654

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.80  E-value=0.00013  Score=56.56  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhc--CCCCCeEEEEecccc------------------------------------
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHF--KTEEDVSIAKIDCTQ------------------------------------  141 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~--~~~~~i~~~~vd~~~------------------------------------  141 (324)
                      .++.|+..+|++|..+.+.+.++.+++  .+  ++.+...+..-                                    
T Consensus        30 ~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~~  107 (175)
T 1z6m_A           30 KMIEFINVRCPYCRKWFEESEELLAQSVKSG--KVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE  107 (175)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHTT--SEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHHhhCC--cEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcChh
Confidence            589999999999999999999998888  55  56655433210                                    


Q ss_pred             ------------------------------chhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        142 ------------------------------HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       142 ------------------------------~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                                                    ...+++.+||+++|++++  +|+   .+.|..+.+.|.+.|.
T Consensus       108 ~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~---~~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          108 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIE  174 (175)
T ss_dssp             HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHT
T ss_pred             hccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCE---EccCCCCHHHHHHHhc
Confidence                                          112345678999999765  665   3578889999888774

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.80  E-value=0.00025  Score=54.67  Aligned_cols=91  Identities=18%  Similarity=0.322  Sum_probs=59.8

Q ss_pred             cCCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcCCC-CCeEEEEeccc--cc-----hhhhhhCC----------------
Q psy14086         96 SLGNHFVKFYAPWCG-HCQSLAPVWQELASHFKTE-EDVSIAKIDCT--QH-----RSICQSFD----------------  150 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~--~~-----~~~~~~~~----------------  150 (324)
                      ..+.++|.||.+||+ .|....+.+.++.+.++.. .++.++.|.++  .+     +..+++|+                
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~  110 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLED  110 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHH
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHH
Confidence            466889999999996 7999889888888877532 24666655443  11     12233332                


Q ss_pred             --------------------ccccceEEEEeC-CeEeeeecCC--CCHHHHHHHHHhhh
Q psy14086        151 --------------------IKSYPTLLWIES-GKKLDKFQGS--RTLETLVNYVSKMK  186 (324)
Q Consensus       151 --------------------i~~~P~~~~~~~-g~~~~~~~g~--~~~~~i~~fi~~~~  186 (324)
                                          +.+.|+++++++ |+....|.|.  ...+.|.+-|+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          111 ITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             HHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence                                223467788876 6666677764  45688888877654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.78  E-value=7.9e-05  Score=57.73  Aligned_cols=80  Identities=10%  Similarity=0.094  Sum_probs=49.9

Q ss_pred             HHHHhcCCCEEEE-EeCCCCHhHh-hHHHHHHHHHHhcCCCCCeEE---EEeccc---------------------cchh
Q psy14086         91 FEKYVSLGNHFVK-FYAPWCGHCQ-SLAPVWQELASHFKTEEDVSI---AKIDCT---------------------QHRS  144 (324)
Q Consensus        91 f~~~~~~~~~~v~-f~~~~c~~c~-~~~~~~~~la~~~~~~~~i~~---~~vd~~---------------------~~~~  144 (324)
                      +.++...+++++. |++.||++|. ...+.|++++.+|+.. .+.+   +..|..                     ....
T Consensus        37 L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~-gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~  115 (173)
T 3mng_A           37 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK-GVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGA  115 (173)
T ss_dssp             HHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCH
T ss_pred             hHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChH
Confidence            4443345555544 4599999999 5899999999999753 3433   333321                     1134


Q ss_pred             hhhhCCcc-------------ccceEEEEeCCeEeeeecC
Q psy14086        145 ICQSFDIK-------------SYPTLLWIESGKKLDKFQG  171 (324)
Q Consensus       145 ~~~~~~i~-------------~~P~~~~~~~g~~~~~~~g  171 (324)
                      +++.||+.             ..|+.+++++|.....+.+
T Consensus       116 va~~yGv~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~  155 (173)
T 3mng_A          116 FGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVE  155 (173)
T ss_dssp             HHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEEC
T ss_pred             HHHHhCCCcccccccccCCcceEEEEEEEECCEEEEEEEe
Confidence            66667764             3488888886655544444

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.73  E-value=0.00011  Score=57.86  Aligned_cols=40  Identities=15%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEecc
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDC  139 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~  139 (324)
                      .+.+|.|++.||++|+.+.|.+   .++.+.+.+  ++.|..++.
T Consensus        15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~   57 (189)
T 3l9v_A           15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHV   57 (189)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEEC
T ss_pred             CCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEec
Confidence            4679999999999999999986   688888876  566665554

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.73  E-value=0.00019  Score=57.00  Aligned_cols=71  Identities=8%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCcc
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDIK  152 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i~  152 (324)
                      .++++|.|| +.||++|....+.++++++++ .  ++.++.|..+.                       ...+++.||+.
T Consensus        78 Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~--~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~  154 (200)
T 3zrd_A           78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E--NTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVA  154 (200)
T ss_dssp             TSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T--TEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCE
T ss_pred             CCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C--CCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCce
Confidence            456788998 789999999999999999999 3  57777665542                       12345555654


Q ss_pred             ---------ccceEEEEeC-CeEeeeec
Q psy14086        153 ---------SYPTLLWIES-GKKLDKFQ  170 (324)
Q Consensus       153 ---------~~P~~~~~~~-g~~~~~~~  170 (324)
                               ..|+.++++. |+....+.
T Consensus       155 ~~~~~~~g~~~p~~~lID~~G~I~~~~~  182 (200)
T 3zrd_A          155 ITEGPLAGLTARAVVVLDGQDNVIYSEL  182 (200)
T ss_dssp             ECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             eecccCCCccccEEEEECCCCeEEEEEe
Confidence                     2599999975 66554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	3e-23
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	3e-22
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	8e-23
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	2e-16
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	4e-21
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	8e-21
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	6e-05
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	1e-19
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	5e-18
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-17
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-15
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	9e-05
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	2e-17
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	4e-15
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-16
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-15
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	2e-16
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	1e-14
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	7e-04
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	4e-16
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	8e-16
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	5e-05
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	5e-16
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	6e-12
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	9e-05
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	9e-16
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	7e-14
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	2e-15
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	2e-12
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	7e-05
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-14
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	2e-12
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-14
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-13
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	5e-14
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	5e-12
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	7e-14
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-13
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-04
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-11
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	5e-11
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	4e-11
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	1e-09
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	1e-10
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-10
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	3e-10
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	4e-10
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	5e-10
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	4e-09
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	0.002
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	5e-10
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	5e-08
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-10
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	6e-10
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	6e-10
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-09
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	7e-10
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	3e-08
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-08
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	6e-08
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	3e-08
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	6e-07
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-07
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	2e-07
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	2e-07
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	4e-06
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-07
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	5e-07
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	3e-07
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	6e-07
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	7e-07
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-04
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	2e-06
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	7e-04
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	2e-06
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.002
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	1e-04
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	0.002
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	0.001

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 90.5 bits (224), Expect = 3e-23
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 211 VVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
            V L   +F   ++      +KF        K     +             ++IA V   
Sbjct: 4   CVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVK 61

Query: 270 Q---ELSKDLCNQEG--VDGFPSIYVYKNG---VRTAEYNGSRDLEELYQFILKH 316
                 +K L ++       FPSI+++K           +    L+ L  F+  +
Sbjct: 62  DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 87.8 bits (217), Expect = 3e-22
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 14/118 (11%)

Query: 82  GLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEE-DVSIAKIDC 139
           G V+L E SFEK V    +  VKF        +     +   +        D+ IA +  
Sbjct: 3   GCVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGV 60

Query: 140 TQ-----HRSICQSF--DIKSYPTLLWIESGK---KLDKFQGSRTLETLVNYVSKMKG 187
                  ++++   +  D K++P++   +               TL+ L  +VS    
Sbjct: 61  KDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 118

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 89.7 bits (222), Expect = 8e-23
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 4/130 (3%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELA 123
           ++TP +   + ++  G   ++E   + +++        +               +  EL 
Sbjct: 3   NDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELL 62

Query: 124 SHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
             F  +    +A  D  Q  +I   F +  +P  L    G       G      L+N + 
Sbjct: 63  REFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR 121

Query: 184 KMKGPLNKKA 193
            +  P  ++A
Sbjct: 122 GLVEPQQERA 131

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 214 LTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           ++    +D +     G V +                  EL  +  D    +     D  Q
Sbjct: 22  VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA--IADLEQ 79

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHDE 323
              + + ++ GV  FP+  V+  G      NG     EL   +    VE   E
Sbjct: 80  S--EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL-VEPQQE 129

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.1 bits (210), Expect = 4e-21
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 206 VKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCK-----RLAPTWEELGTKLLDNKH 259
           +  +  + L +  F  VI     V +KF   +    K     RLA         L     
Sbjct: 1   LHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLL---VA 57

Query: 260 GIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN--GVRTAEYNGSRDLEELYQFILKH 316
            + I+       +      +   + +P  Y++++        Y+G+  +  + +++   
Sbjct: 58  EVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.3 bits (208), Expect = 8e-21
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 81  EGLVELTEESFEKYVSLGNH-FVKFYAPWCGHC-----QSLAPVWQELASHFKTEEDVSI 134
           +G + L   +F K +       VKF   +         + LA            E  +  
Sbjct: 4   KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGI-- 61

Query: 135 AKIDCTQHRSICQSF--DIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSK 184
           +      +  + + +  D +SYP       G   +   + G+  +  +  ++  
Sbjct: 62  SDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG 115

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 8   SRVTIGQVDCTVEKQLCA--DQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQ 65
           + V I      +  +L      +   YP    F+ G       + G   +  +  ++  Q
Sbjct: 57  AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 80.8 bits (199), Expect = 1e-19
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 78  IVNEGLVELTEESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSI 134
           ++  G   +   + + ++     G   +               +  EL   F  + D  +
Sbjct: 8   LLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQV 66

Query: 135 AKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
           A  D  Q  +I   F+++ +P  L    GK      G      L+  +  +
Sbjct: 67  AVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSI 117

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 76.6 bits (188), Expect = 5e-18
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 4/105 (3%)

Query: 209 EPVVSLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           +PV + T +++   +  G + +                  EL  +         +A  D 
Sbjct: 14  QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADL 71

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
            Q   + + ++  V  FP+  V+ +G      +G     EL   +
Sbjct: 72  EQS--EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLM 114

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 2e-17
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 5/117 (4%)

Query: 203 EVPVKPEPVVSLTSENFNDVIKSGT-VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGI 261
           + P + + V+ L   NF + + +   + ++F+APWCGHCK LAP + +   KL      I
Sbjct: 1   DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 262 VIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
            +AKVD T+E   DL  Q GV G+P+I  ++NG      EY   R+ +++  ++ K 
Sbjct: 61  RLAKVDATEE--SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 1e-15
 Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 75  DKPIVNEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVW-QELASHFKTEEDV 132
           D P   + ++ L + +F + ++   +  V+FYAPWCGHC++LAP + +          ++
Sbjct: 1   DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 133 SIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
            +AK+D T+   + Q + ++ YPT+ +  +G      ++   R  + +VN++ K  GP
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 12  IGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           + +VD T E  L     + GYPT+KFF+ G  +   ++   R+   + N++ ++ 
Sbjct: 62  LAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.9 bits (183), Expect = 2e-17
 Identities = 8/116 (6%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 80  NEGLVELTEESFEKYVSLGNH-FVKFYAPWCGH------CQSLAPVWQELASHFKTEEDV 132
            + ++ +  ++++          + ++ P           +    + +  A   + ++ V
Sbjct: 10  VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLE-DKGV 68

Query: 133 SIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKGP 188
               +D  +  ++ +   +    ++   +  + ++ + G  + +TLV ++  +   
Sbjct: 69  GFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE-YDGEFSADTLVEFLLDVLED 123

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 209 EPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLD-----NKHGIV 262
           + V+++ ++N+ +V K    + + +  P           +E     L          G+ 
Sbjct: 11  DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKA-SQRQFEMEELILELAAQVLEDKGVG 69

Query: 263 IAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
              VD  ++    +  + G+    S           EY+G    + L +F+L  
Sbjct: 70  FGLVDSEKD--AAVAKKLGLTEEDS-IYVFKEDEVIEYDGEFSADTLVEFLLDV 120

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 81  EGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           + ++ LT++SF+  V   +    V F+A WCG C+ +AP+  E+A   + +  +++AK++
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD--EYQGKLTVAKLN 59

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             Q+      + I+  PTLL  ++G+      G+ +   L  ++  
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 105

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 69.0 bits (168), Expect = 2e-15
 Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 209 EPVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           + ++ LT ++F+  +    G + + F+A WCG CK +AP  +E+  +    +  + +AK+
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL 58

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +  Q        + G+ G P++ ++KNG   A   G+    +L +F+  +
Sbjct: 59  NIDQN--PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 84  VELTEESFEKYV-SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           + LT+ +F++ +       V F+A WCG C+ +APV +E A      + V++AK++  ++
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
                 F I S PTL+  + G+ + +  G +  E L   ++ +
Sbjct: 61  PETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADV 103

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 66.7 bits (162), Expect = 1e-14
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 211 VVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
            ++LT  NF   I+    V + F+A WCG C+ +AP  EE      D    + +AK++  
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVD 58

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +    +  +Q G+   P++ ++K G    +  G +  E+L   +   
Sbjct: 59  EN--PETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADV 103

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 9   RVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           +VT+ +++     +  +   I   PTL  FK G   +  +  G +    L   + + +
Sbjct: 49  KVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVK--QLIGYQPKEQLEAQLADVL 104

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 71.4 bits (174), Expect = 4e-16
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 210 PVVSLTSENFNDVI--KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           PV  + ++N+N+++   +  V I+F+APWCGHCK LAP +EELG  L           + 
Sbjct: 3   PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELG-ALYAKSEFKDRVVIA 61

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
                       + + GFP+I +Y  G   +   Y+GSR +E+L +FI ++
Sbjct: 62  KVDA--TANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 110

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 70.3 bits (171), Expect = 8e-16
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 84  VELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
             +  +++ + V        ++FYAPWCGHC++LAP ++EL + +   E      I    
Sbjct: 5   TVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD 64

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSK 184
             +     +I+ +PT+    +G K     + GSRT+E L+ ++++
Sbjct: 65  ATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 5   SEDSRVTIGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINE 64
           ++        +            EI G+PT+K +  G++ +   + G+R +  L  FI E
Sbjct: 50  AKSEFKDRVVIAKVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

Query: 65  QIS 67
              
Sbjct: 110 NGK 112

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (175), Expect = 5e-16
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 207 KPEPVVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
           +   V  L  +N ++++      V + ++APWCGHCKRLAPT++EL     +    ++IA
Sbjct: 10  QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIA 69

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKHKVESHD 322
           K+D T+   + +  +     +P+I +Y  G    +  Y GSR L+ L+ FI ++     D
Sbjct: 70  KLDHTENDVRGVVIEG----YPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVD 125

Query: 323 E 323
            
Sbjct: 126 G 126

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 67  SETPKEPSDKPIVNEGLVELTEESFEKYVSLGNH--FVKFYAPWCGHCQSLAPVWQELAS 124
           S+   E  D  +      +L  ++ ++ V+       V +YAPWCGHC+ LAP +QELA 
Sbjct: 3   SQEIFENQDSSVF-----QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELAD 57

Query: 125 HFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDK--FQGSRTLETLVNYV 182
            +       +         +  +   I+ YPT++    GKK +   +QGSR+L++L +++
Sbjct: 58  TYA-NATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFI 116

Query: 183 SKMKGPLNKKADSPDAENASEVPVKPE 209
            +         D       ++     E
Sbjct: 117 KENGH---FDVDGKALYEEAQEKAAEE 140

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 21  KQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQISETPKEPSDKPIVN 80
           +       I GYPT+  +  G +SE+  ++G+R L +L +FI E         +      
Sbjct: 75  ENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQ 134

Query: 81  EGLVE 85
           E   E
Sbjct: 135 EKAAE 139

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 70.2 bits (171), Expect = 9e-16
 Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 80  NEGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKI 137
           ++G++ +T+  FE  V  +     V F+A WCG CQ ++P+    A+ +     V   +I
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           D   + +  + + ++  P L  ++  + LD  +G  + + L++++  
Sbjct: 61  DP--NPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDT 105

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 64.8 bits (157), Expect = 7e-14
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENF-NDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           V+++T   F ++V+K+   V + F+A WCG C+ ++P          D         V  
Sbjct: 4   VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLK-----VVKL 58

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             + +     +  V+G P++ + K         G    ++L  F+  H
Sbjct: 59  EIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTH 106

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (168), Expect = 2e-15
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 204 VPVKPEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIV 262
           V  +   VV L +++FN+ I+S   V  +FFAPWCGHCK +AP + +    L++    + 
Sbjct: 5   VAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLA 64

Query: 263 IAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG--VRTAEYNGSRDLEELYQFILKH 316
                     ++DLC +  + GFPS+ ++KN     + +Y G R  E + QF++K 
Sbjct: 65  ----QIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 116

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (148), Expect = 2e-12
 Identities = 31/112 (27%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 80  NEGLVELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID 138
           +  +V+L  +SF +Y+   +    +F+APWCGHC++        A+    E+++++A+ID
Sbjct: 9   DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKN-MAPEYVKAAETLVEKNITLAQID 67

Query: 139 CTQHRSICQSFDIKSYPTLLWIESGKKLD--KFQGSRTLETLVNYVSKMKGP 188
           CT+++ +C   +I  +P+L   ++    +   ++G RT E +V ++ K   P
Sbjct: 68  CTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP 119

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 12  IGQVDCTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
           + Q+DCT  + LC +  I G+P+LK FK    + +  + G R    +  F+ +Q 
Sbjct: 63  LAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS 117

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 66.7 bits (162), Expect = 1e-14
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 211 VVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
           V  +  + F  ++K+     V +  F  WCG CK +AP +E+     L  ++  VI    
Sbjct: 8   VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK-----LAEEYLDVIFLKL 62

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
              + +K L  + G+   P+  + K      E  G    ++L + I   +
Sbjct: 63  DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG-AKYDKLLEAIQAAR 111

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 16/106 (15%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 84  VELTEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
            E+ +++F   V         +  +  WCG C+++AP +++LA  +     + +      
Sbjct: 9   TEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE- 67

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMK 186
            ++++ +   I+  PT   ++    + +  G++  + L+  +   +
Sbjct: 68  -NKTLAKELGIRVVPTFKILKENSVVGEVTGAKY-DKLLEAIQAAR 111

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 66.5 bits (161), Expect = 2e-14
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 84  VELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
             + +++F+  V  S     V F+APWCG C+ +APV  E+    + ++ +   K++  +
Sbjct: 4   GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEI--AGEYKDKLKCVKLNTDE 61

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
             ++   + I+S PT++  + GKK +   G+    T+V  V K 
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 63.4 bits (153), Expect = 2e-13
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 210 PVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVD 267
              ++  + F +V+   S  V + F+APWCG C+ +AP  +E+  +    K  +   K++
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGE---YKDKLKCVKLN 58

Query: 268 CTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +    ++ ++ G+   P+I V+K G +     G+     + Q + K+
Sbjct: 59  TDES--PNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 65.3 bits (158), Expect = 5e-14
 Identities = 10/105 (9%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 85  ELTEESFEKYVSLGN--HFVKFYAPWCGHCQSLAPVWQEL--ASHFKTEEDVSIAKIDCT 140
            L +E+ +   ++      + F  P C +C     +  +    +    +  +    ++  
Sbjct: 1   NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI 60

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
           ++      +++ + P ++   +G+   +F+G+   +  +  +   
Sbjct: 61  EYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 105

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 59.5 bits (143), Expect = 5e-12
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 213 SLTSENFNDV--IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +L  E    +  I      + F  P C +C        +   +      G ++  +    
Sbjct: 1   NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVE-A 59

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
               +  +Q  V   P I +  NG    E+ G+   +   + +L  
Sbjct: 60  IEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 105

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 64.0 bits (155), Expect = 7e-14
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159
           +   F +P C +C     V  E    F  + DV    I   +       + + + P +  
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE--KAIEYGLMAVPAIAI 61

Query: 160 IESGKKLDKFQGSRTLETLVNYVSK 184
                   +F G+ + E L   ++ 
Sbjct: 62  NGVV----RFVGAPSREELFEAIND 82

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 62.8 bits (152), Expect = 2e-13
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 227 TVFIK-FFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF 285
            V I+ F +P C +C       +E        + G  I        + ++   + G+   
Sbjct: 2   VVNIEVFTSPTCPYCPMAIEVVDE-----AKKEFGDKIDVEKIDIMVDREKAIEYGLMAV 56

Query: 286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           P+I +         + G+   EEL++ I   
Sbjct: 57  PAIAINGVV----RFVGAPSREELFEAINDE 83

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 17 CTVEKQLCADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
            V+++   +  +   P +            +F G      L   IN+++
Sbjct: 41 IMVDREKAIEYGLMAVPAIAINGVV------RFVGAPSREELFEAINDEM 84

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 58.4 bits (140), Expect = 1e-11
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 211 VVSLTSENFNDVIKSGT--VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDC 268
           V  +   ++ + +      V + F+APWCG CK +AP  +EL  +         +   + 
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 269 TQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                  +  Q  +   P++  +KNG R     G+     L   I K+
Sbjct: 61  -----PGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 103

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 56.9 bits (136), Expect = 5e-11
 Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 4/104 (3%)

Query: 83  LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT 140
           + ++ + S++++V  S     V F+APWCG C+ +APV  E     +    +++ K++  
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDE--LAKEYSGKIAVYKLNTD 58

Query: 141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           +   I   ++I+S PT+L+ ++G++ +   G+    TL + + K
Sbjct: 59  EAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEK 102

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.2 bits (137), Expect = 4e-11
 Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 211 VVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           +   T     + +    T         C +C++ A T   +  +   + + I   +    
Sbjct: 11  LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
            +  +   ++ G+   P      +G      + S   +E+  F 
Sbjct: 71  ND-LQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 113

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 3/106 (2%)

Query: 81  EGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELAS--HFKTEEDVSIAKI 137
           + L   T    ++ +              C +C+  A     + +          S    
Sbjct: 9   KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS 68

Query: 138 DCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS 183
                ++    + I + P  + I  G+   +   S + + + ++  
Sbjct: 69  QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG 114

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 84  VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           V+  +E FEK         V F A WC  C+ +AP++ ELA  F    +V+  K+D  + 
Sbjct: 12  VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDEL 68

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
           +++ + +++++ PT ++++ GK +DK  G    + L   V+K
Sbjct: 69  KAVAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAK 109

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 212 VSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           V    E+F     S   + + F A WC  CK +AP + EL  K  +     V        
Sbjct: 12  VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDEL--- 68

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
              K +  +  V+  P+    K+G    +  G  D + L   + KH
Sbjct: 69  ---KAVAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKH 110

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           ++  F+  +S        VKF    CG C     +    +S           ++D  Q +
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCL---RIAPAFSSMSNKYPQAVFLEVDVHQCQ 64

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
               + +I + PT  +  +  ++D++QG+     L   + +
Sbjct: 65  GTAATNNISATPTFQFFRNKVRIDQYQGADA-VGLEEKIKQ 104

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 215 TSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +  +F   +    S    +KF    CG C R+AP +         +        ++    
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSS------MSNKYPQAVFLEVDVH 61

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +       +   P+   ++N VR  +Y G+ D   L + I +H
Sbjct: 62  QCQGTAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQH 105

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 53.4 bits (127), Expect = 5e-10
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG 284
           S      F +P C HC       EE     + N+    +         +     + G+  
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEE-----VANEMPDAVEVEYINVMENPQKAMEYGIMA 56

Query: 285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            P+I +  +     E+ G+   E L + I K 
Sbjct: 57  VPTIVINGDV----EFIGAPTKEALVEAIKKR 84

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 50.7 bits (120), Expect = 4e-09
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
              F +P C HC +   V +E     +  + V +  I+  ++      + I + PT++  
Sbjct: 6   IELFTSPMCPHCPAAKRVVEE--VANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 161 ESGKKLDKFQGSRTLETLVNYVSK 184
                  +F G+ T E LV  + K
Sbjct: 64  GDV----EFIGAPTKEALVEAIKK 83

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 6/43 (13%)

Query: 24 CADQEITGYPTLKFFKKGSESEASKFRGTRDLPTLTNFINEQI 66
            +  I   PT+            +F G      L   I +++
Sbjct: 49 AMEYGIMAVPTIVINGDV------EFIGAPTKEALVEAIKKRL 85

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.1 bits (129), Expect = 5e-10
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 215 TSENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT 269
           T E +N+ ++        V + F A WCG C+ +AP + +L  KL +     V       
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELK- 71

Query: 270 QELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
                 + +   +   P+    K G    +  G    +EL   I KH
Sbjct: 72  -----SVASDWAIQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAKH 112

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.3 bits (114), Expect = 5e-08
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           T E++ + +   N       V F A WCG C+    +    A   K   +V   K+D  +
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCR---FIAPFFADLAKKLPNVLFLKVDTDE 69

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            +S+   + I++ PT ++++ GK LDK  G++  + L + ++K
Sbjct: 70  LKSVASDWAIQAMPTFMFLKEGKILDKVVGAKK-DELQSTIAK 111

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 54.1 bits (129), Expect = 5e-10
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 87  TEESFEKYVSLGNH-----FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ 141
           ++ +++  ++ G        V F A WCG C+ +AP+++ L++ +     V   K+D   
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDA 66

Query: 142 HRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             ++ ++  I + PT    + G K D   G  + + L   V+K
Sbjct: 67  VAAVAEAAGITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAK 108

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 54.1 bits (129), Expect = 6e-10
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 211 VVSLTS-ENFNDVIKSGT-----VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIA 264
           V+ + S   ++  +  G      + + F A WCG CK +AP +E L      N +   + 
Sbjct: 4   VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL-----SNDYAGKVI 58

Query: 265 KVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
            +    +    +    G+   P+ +VYK+GV+  +  G    ++L   + KH
Sbjct: 59  FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAKH 109

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 6e-10
 Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
           ++ +F++ +         V F A WCG C+ + P +  L+  +         ++D    +
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI---FLEVDVDDCQ 63

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM 185
            +    ++K  PT  + + G+K+ +F G+   E L   ++++
Sbjct: 64  DVASECEVKCMPTFQFFKKGQKVGEFSGANK-EKLEATINEL 104

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 215 TSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
           +   F + + +     V + F A WCG CK + P +  L     +    ++  +VD    
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLS----EKYSNVIFLEVDVDDC 62

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
             +D+ ++  V   P+   +K G +  E++G  + E+L   I
Sbjct: 63  --QDVASECEVKCMPTFQFFKKGQKVGEFSG-ANKEKLEATI 101

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 53.3 bits (127), Expect = 7e-10
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 VSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ 270
           +  +   F+ +I     V + FFA WCG CKR+AP +EE       +K    +  +    
Sbjct: 4   IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEE------CSKTYTKMVFIKVDV 57

Query: 271 ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
           +   ++  +E +   P+  VYKNG       G+ D   L Q I K+
Sbjct: 58  DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGAND-SALKQLIEKY 102

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 48.7 bits (115), Expect = 3e-08
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 84  VELTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH 142
           +  ++  F+  +S      V F+A WCG C+ +AP ++E     KT   +   K+D  + 
Sbjct: 4   IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEE---CSKTYTKMVFIKVDVDEV 60

Query: 143 RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
             + +  +I S PT    ++G  +D   G+     L   + K
Sbjct: 61  SEVTEKENITSMPTFKVYKNGSSVDTLLGAND-SALKQLIEK 101

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 87  TEESFEKYVSLGNH---FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR 143
            +   +  ++  +     + F+A WCG C+ ++P   EL++ F    +V + K+D  +  
Sbjct: 12  DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECE 69

Query: 144 SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK 184
            I   ++I S PT +++++G K+++F G+   + L + +  
Sbjct: 70  DIAMEYNISSMPTFVFLKNGVKVEEFAGANA-KRLEDVIKA 109

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
              + +  +   +   V + FFA WCG CK ++P   EL T        +V+ KVD  + 
Sbjct: 12  DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST---QFADNVVVLKVDVDEC 68

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKH 316
             +D+  +  +   P+    KNGV+  E+ G+   + L   I  +
Sbjct: 69  --EDIAMEYNISSMPTFVFLKNGVKVEEFAGANA-KRLEDVIKAN 110

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW 159
            F  +Y+  C +C  +      +A        +    ID    ++     ++   P +  
Sbjct: 18  EFETYYSLSCHNCPDVVQALNLMA---VLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV 74

Query: 160 IESGKKLDKFQGSRTLETLVNYV 182
             +GK+    QG  TL  +V  V
Sbjct: 75  --NGKE--FGQGRMTLTEIVAKV 93

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.7 bits (105), Expect = 6e-07
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 223 IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV 282
           I     F  +++  C +C  +      +          I    +D      ++   +  V
Sbjct: 13  IDGDFEFETYYSLSCHNCPDVVQALNLMAVL----NPRIKHTAIDGGTF--QNEITERNV 66

Query: 283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFI 313
            G P+++V           G   L E+   +
Sbjct: 67  MGVPAVFVNGKEF----GQGRMTLTEIVAKV 93

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 9/106 (8%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 215 TSENFNDVIKSGT---VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE 271
                +  I S     V I+F   W   C ++      +  K+ +     ++   +    
Sbjct: 9   NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDF 68

Query: 272 LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK 317
                     +    ++  +          G+ +  ++   +   +
Sbjct: 69  -----NKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQ 109

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI 160
            ++F   W   C  +  V   +A   K    + +  I   +     + +++    T+++ 
Sbjct: 26  VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT--EVPDFNKMYELYDPCTVMFF 83

Query: 161 ESGKKLDKFQGS 172
              K +    G+
Sbjct: 84  FRNKHIMIDLGT 95

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 211 VVSLTS-ENFNDVI----KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAK 265
           V  L + E F + I    K  T+ +  +      C  L  + E L  +    K      K
Sbjct: 101 VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKF----CK 156

Query: 266 VDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL-------EELYQFILKHKV 318
           +  +        ++   D  P++ VYK G   + +    +         ++  F+ ++ +
Sbjct: 157 IRASNT---GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGL 213

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 85  ELTEESFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
            + +E     +      V  Y      C +L    + L         V   KI  +   +
Sbjct: 113 TIEKEQKVTTI-----VVNIYEDGVRGCDALNSSLECL---AAEYPMVKFCKIRASNTGA 164

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQG 171
               F     PTLL  + G+ +  F  
Sbjct: 165 G-DRFSSDVLPTLLVYKGGELISNFIS 190

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 208 PEPVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV 266
           P  V   + E F +++         F A WCG CK +    E+             +   
Sbjct: 8   PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEK------IAYEFPTVKFA 61

Query: 267 DCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK 315
               + + ++ ++  V   P+  + ++G       G+ +   L Q +  
Sbjct: 62  KVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGA-NPGMLRQKLRD 109

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 86  LTEESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS 144
            + E F   +S        F A WCG C+++    ++          V  AK+D   +  
Sbjct: 14  YSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEK---IAYEFPTVKFAKVDADNNSE 70

Query: 145 ICQSFDIKSYPTLLWIESGKKLDKFQG 171
           I     +   PT +   SGK L    G
Sbjct: 71  IVSKCRVLQLPTFIIARSGKMLGHVIG 97

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 106 APWCGHCQSLAPVWQELASHFKTEEDVSIAKID-------CTQHRSICQSFDIKSYPTLL 158
             WC  C    PV +E   H    E                  +    ++  + + PTLL
Sbjct: 37  KSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLL 94

Query: 159 WIESGKKLDKFQGSR--TLETLVN 180
              + +KL + +  +   +E L +
Sbjct: 95  KYGTPQKLVESECLQANLVEMLFS 118

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 20/120 (16%)

Query: 209 EPVVSLTSENFNDVI---KSGTVFIKFFA-------PWCGHCKRLAPTWEELGTKLLDNK 258
           E V     E F+  +      T+F  F          WC  C +  P   E    + +  
Sbjct: 2   EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG- 60

Query: 259 HGIVIAKVDCTQE-----LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD--LEELYQ 311
              V       ++      + D      V   P++  Y    +  E    +   +E L+ 
Sbjct: 61  --CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 118

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 88  EESFEKYVSLGNH-FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC 146
           E+  ++  + G    V  +  WCG C++L P + E     +   +  +  ++  +     
Sbjct: 15  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDE 74

Query: 147 QSFDIKSYPTLLWI--ESGKKLDKFQGSR 173
                  Y   +     SGK   +     
Sbjct: 75  DFSPDGGYIPRILFLDPSGKVHPEIINEN 103

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 217 ENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKD 275
           +   +   SG  + +     WCG CK L P + E       + + +++  ++  +E   +
Sbjct: 16  DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMV-NLEDEEEPKDE 74

Query: 276 LCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQF 312
             + +G      +++  +G    E            F
Sbjct: 75  DFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYF 111

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 29/135 (21%)

Query: 208 PEPVVSLTSENFNDV----IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVI 263
           P  + +L + +         K     IKF+A WC  C       E+       +   ++ 
Sbjct: 2   PHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLIT 61

Query: 264 AKVDCTQELSKDLCNQE------------------------GVDGFPSIY-VYKNGVRTA 298
                     KD   Q+                         +  +PS   + K+G    
Sbjct: 62  VASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQR 121

Query: 299 EYNGSRDLEELYQFI 313
              GS +  +    I
Sbjct: 122 IVKGSINEAQALALI 136

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 28/117 (23%)

Query: 101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIA------------------------- 135
            +KF+A WC  C S     ++ A   K      I                          
Sbjct: 27  LIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYP 86

Query: 136 --KIDCTQHRSICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKMKGPL 189
              +      +I QS +I  YP+   I + G      +GS      +  +      L
Sbjct: 87  KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNADL 143

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 29/138 (21%)

Query: 207 KPEPVVSLTSENFN------DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHG 260
           +P P ++      N       +I      I F++  C  CK   P   E   K  D  + 
Sbjct: 5   QPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNV 64

Query: 261 IVIAKVD----------------------CTQELSKDLCNQEGVDGFPSIYVY-KNGVRT 297
           + +                             +    L +    +  P+ YV+ K G   
Sbjct: 65  VAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLR 124

Query: 298 AEYNGSRDLEELYQFILK 315
               G   ++ L + + +
Sbjct: 125 HFQAGGSGMKMLEKRVNR 142

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 12/110 (10%), Positives = 35/110 (31%), Gaps = 26/110 (23%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----------------- 144
           + F++  C  C+   P   E    ++ + +V    +  ++                    
Sbjct: 34  IHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP 93

Query: 145 --------ICQSFDIKSYPTLLWI-ESGKKLDKFQGSRTLETLVNYVSKM 185
                   +  +F+ +  P      ++G+      G   ++ L   V+++
Sbjct: 94  IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 12/87 (13%), Positives = 20/87 (22%), Gaps = 9/87 (10%)

Query: 102 VKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE 161
             F    C  C     V Q     F     +    I   ++ +  + +     P      
Sbjct: 20  TLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKF-DIPVFHLNG 74

Query: 162 SGKKLDKFQGSRTLETLVNYVSKMKGP 188
                           L   + K+ GP
Sbjct: 75  QF----LMMHRVNTSKLEKQLRKLSGP 97

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 213 SLTSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEEL 250
           S +S N +   ++  V   F    C  C       +  
Sbjct: 3   SGSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPY 40

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/138 (10%), Positives = 30/138 (21%), Gaps = 12/138 (8%)

Query: 64  EQISETPKEPSDKPIVNEGLVELTEESFEKYVSLGN--HFVKFYAPWCGHCQSLAPVWQE 121
                T +    +         L     E+   +      +     WC  CQ        
Sbjct: 19  GHGLATEQGAVARFRQKLESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDF 78

Query: 122 LASHFKTEEDVSIAKIDCTQHRSICQSFDIKS---YPTLLWIESGKKLDKFQGSRTLETL 178
                    ++ +A I   +     +          P +L ++    L      R    L
Sbjct: 79  AQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERPQAVL 135

Query: 179 VNY----VSKMKGPLNKK 192
                   +   G   + 
Sbjct: 136 DGGPQALAAYKAGDYLEH 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.9
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.89
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.89
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.89
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.89
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.88
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.88
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.88
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.88
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.87
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.86
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.85
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.84
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.83
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.83
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.82
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.82
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.82
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.82
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.82
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.82
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.81
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.81
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.81
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.81
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.8
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.8
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.8
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.8
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.8
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.79
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.79
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.79
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.79
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.78
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.78
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.78
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.77
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.77
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.77
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.75
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.75
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.74
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.73
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.72
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.71
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.71
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.71
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.69
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.68
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.68
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.65
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.64
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.61
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.6
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.54
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.5
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.42
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.39
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.37
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.35
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.34
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.32
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.29
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.28
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.27
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.24
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.24
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.22
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.21
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.19
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.16
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.16
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.15
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.13
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.13
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.1
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.09
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.08
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.05
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.03
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.03
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.02
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.0
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.96
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.95
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.93
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.9
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.87
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.86
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.83
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.76
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.44
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.24
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.2
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.11
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.07
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.06
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.98
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.93
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.93
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.92
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.9
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.89
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.86
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.86
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.84
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.82
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.8
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.79
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.79
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.78
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.72
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.71
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.69
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.69
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.69
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.66
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.59
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.57
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.57
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.55
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.5
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.48
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.45
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.44
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.43
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.42
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.42
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.4
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.39
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.36
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.34
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.31
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.31
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.3
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.27
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	97.26
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.25
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.24
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.24
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.24
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.23
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.13
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.05
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.02
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.94
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.91
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.86
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	96.82
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.76
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	96.62
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.61
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.57
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.53
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	96.49
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	96.49
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.48
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.47
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.47
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.41
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	96.41
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.32
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	96.3
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.21
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.21
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.18
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.1
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.09
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	95.88
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.85
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.19
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	94.97
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	94.94
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	94.89
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.85
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	94.54
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	94.53
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	94.37
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	94.24
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	91.65
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	90.4
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	89.41
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	89.27
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	87.63
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	83.45
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	82.27

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.90  E-value=2.3e-23  Score=149.15  Aligned_cols=105  Identities=21%  Similarity=0.525  Sum_probs=97.5

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      .++.++|+++|++.+  .+++++|.||++||++|+.+.|.|++++.++.+  .+.|+.+|+++++.++++|+|+++|+++
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~~   79 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   79 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccHHHHHHhcccCCCEEE
Confidence            368999999999866  345799999999999999999999999999987  7999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++|+.+.++.|..+.++|.+||+++++
T Consensus        80 ~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          80 LVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            99999999999999999999999998763

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.89  E-value=6.2e-23  Score=145.89  Aligned_cols=102  Identities=27%  Similarity=0.635  Sum_probs=95.1

Q ss_pred             ceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +.+||+++|++.+.  +++++|.||++||++|+.+.|.+.+++..+.+  ++.++.+|++.++.++++|+|+++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcC--ccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            56899999999773  44789999999999999999999999999988  799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++|+.+.++.|..+.+.|.+||++++
T Consensus        79 ~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999864

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.89  E-value=5.8e-23  Score=146.26  Aligned_cols=102  Identities=27%  Similarity=0.564  Sum_probs=95.4

Q ss_pred             ceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEe
Q psy14086         83 LVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIE  161 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~  161 (324)
                      ...||+++|++.+++ ++++|.||++||++|+.+.|.|++++.++.+  ++.|+.+|++.++.++++|+|+++||+++|+
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~   79 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCcccHHHCCcceeeEEEEEE
Confidence            467899999998854 5789999999999999999999999999988  8999999999999999999999999999999


Q ss_pred             CCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        162 SGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       162 ~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +|+.+.++.|..+.++|.++|++.+
T Consensus        80 ~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          80 GGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHh
Confidence            9999999999999999999998765

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.1e-22  Score=145.53  Aligned_cols=104  Identities=27%  Similarity=0.604  Sum_probs=96.6

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..+.+||+++|++.+  .+++++|.||++||++|+.+.|.+.+++..+..  ++.++.+|+++++.++.+|+|+++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            368899999999866  345789999999999999999999999999987  8999999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +|++|+.+.++.|.++.+.|.+||++.+
T Consensus        80 ~~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          80 LFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            9999999999999999999999999876

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.89  E-value=1.6e-22  Score=144.43  Aligned_cols=103  Identities=29%  Similarity=0.599  Sum_probs=95.5

Q ss_pred             ceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         83 LVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        83 ~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +..+|+++|++.+  .+++++|.||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.++.++++|+|+++|++++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccchhHHHHhcccceEEEEEE
Confidence            5678999999887  344799999999999999999999999999988  799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|+.+.++.|..+.++|.+||+++++
T Consensus        81 ~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            999999999999999999999998864

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.88  E-value=1.5e-22  Score=144.87  Aligned_cols=105  Identities=20%  Similarity=0.453  Sum_probs=94.6

Q ss_pred             CCeeEeccccccccc-cC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI-KS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~-~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..|..+|+++|++.+ ++ ++++|.||++||++|+.+.|.|++++.+ +..  .+.++.+|++.  +++++++|+|+++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~-~~~--~~~~~~vd~d~--~~~l~~~~~I~~~P   76 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANT-YSD--RLKVVKLEIDP--NPTTVKKYKVEGVP   76 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHH-TTT--TCEEEEEESTT--CHHHHHHTTCCSSS
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHh-cCC--cceeceecccc--cHHHHHHhcccCCC
Confidence            459999999998755 33 5899999999999999999999999955 444  69999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+++|++|+.+..+.|.++.+.|.+||+++++
T Consensus        77 t~~~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          77 ALRLVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            99999999999899999999999999998864

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.88  E-value=1.9e-22  Score=143.27  Aligned_cols=102  Identities=25%  Similarity=0.535  Sum_probs=92.4

Q ss_pred             eeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceE
Q psy14086        211 VVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSI  288 (324)
Q Consensus       211 v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l  288 (324)
                      |.+|++++|++.+.+  ++++|.||++||++|+.+.|.+.+++.+ +..  .+.++.+|++.  +++++++|+|+++||+
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~-~~~--~~~~~~v~~d~--~~~l~~~~~V~~~Pt~   75 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKE-YSG--KIAVYKLNTDE--APGIATQYNIRSIPTV   75 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHh-hcC--ccceeEEeccc--chhhhhhcceeeeeEE
Confidence            578999999987743  4799999999999999999999999965 444  58899999999  9999999999999999


Q ss_pred             EEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        289 YVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       289 ~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      ++|++|+.+..+.|.++.+.|.+||+++|
T Consensus        76 ~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          76 LFFKNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.9e-22  Score=143.38  Aligned_cols=105  Identities=27%  Similarity=0.631  Sum_probs=94.3

Q ss_pred             CCeeEeccccccccc-c-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        209 EPVVSLTSENFNDVI-K-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~-~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..|.+||+++|++.+ + +++++|.||++||++|+.+.|.+.+++.+ +..  ++.++.+|++.  ++.++++|+|.++|
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~-~~~--~~~~~~vd~d~--~~~l~~~~~v~~~P   76 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQG--KLTVAKLNIDQ--NPGTAPKYGIRGIP   76 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TEEEEEEETTT--CTTHHHHTTCCSSS
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHH-hhc--ceeeeeccccc--hhhHHHHhCCCcEE
Confidence            468999999998755 3 35799999999999999999999999955 444  69999999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+++|++|+.+..+.|.++.+.|.+||++++.
T Consensus        77 T~~~~~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          77 TLLLFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999998863

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.88  E-value=2.3e-22  Score=143.10  Aligned_cols=102  Identities=25%  Similarity=0.554  Sum_probs=93.4

Q ss_pred             eeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        211 VVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       211 v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      ...||+++|++.+++ ++++|.||++||++|+.+.|.+++++.+ +..  ++.|+.+|++.  +++++++|+|.++||++
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~-~~~--~~~~~~vd~~~--~~~~~~~~~V~~~Pt~~   76 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA-HAD--KVTVAKLNVDE--NPETTSQFGIMSIPTLI   76 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--TCEEEEEETTT--CHHHHHHTTCCBSSEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhh-cCC--ceEEEEEECCC--CcccHHHCCcceeeEEE
Confidence            567899999998865 5899999999999999999999999966 544  69999999999  89999999999999999


Q ss_pred             EEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        290 VYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       290 ~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +|++|+.+.++.|..+.+.|.++|++.+
T Consensus        77 ~~~~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          77 LFKGGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEECCEEEEEEECCCCHHHHHHHHHHHh
Confidence            9999999989999999999999998875

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.6e-22  Score=143.25  Aligned_cols=107  Identities=29%  Similarity=0.734  Sum_probs=95.5

Q ss_pred             CCCceEcChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         80 NEGLVELTEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      .+.+.+|+.++|++.+++ +.++|.||++||++|+.+.|.|.+++..+++ ..+.|+.|||+.+..++++|+|.++|+++
T Consensus         9 ~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti~   87 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPSLK   87 (119)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeeeeeeccchHHHHHHhccccCCeEE
Confidence            457899999999999854 4689999999999999999999999999875 26999999999999999999999999999


Q ss_pred             EEeCCeE--eeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKK--LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~--~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++|+.  ...|.|.++.++|.+||++..+
T Consensus        88 ~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          88 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             EEECCEEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            9988754  3458899999999999998765

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=5e-22  Score=144.49  Aligned_cols=107  Identities=39%  Similarity=0.883  Sum_probs=94.4

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ++.|..|+.++|++++++ +.++|.||++||++|+.+.|.|++++..+...  ++.|+.+|++.  +.+++.+++|.++|
T Consensus         9 ~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~--~v~~~~vd~~~--~~~l~~~~~v~~~P   84 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTE--NQDLCMEHNIPGFP   84 (119)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             CCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhccc--ceeeeeeeccc--hHHHHHHhccccCC
Confidence            467999999999999865 57999999999999999999999999654332  69999999999  89999999999999


Q ss_pred             eEEEEecCee--eeeecCCCCHHHHHHHHHhhcc
Q psy14086        287 SIYVYKNGVR--TAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       287 ~l~~~~~g~~--~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+++|++|+.  ...|.|.++.++|.+||+++.+
T Consensus        85 ti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          85 SLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             EEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             eEEEEECCEEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            9999998855  3468899999999999998754

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.87  E-value=4.2e-22  Score=142.24  Aligned_cols=104  Identities=24%  Similarity=0.535  Sum_probs=93.2

Q ss_pred             CeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      .+..+++++|++.+.  +++++|.||++||++|+.+.|.+.+++.+ +..  ++.++.+|++.  +++++++|+|+++||
T Consensus         2 ~~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~-~~~--~~~~~~vd~d~--~~~l~~~~~V~~~Pt   76 (107)
T d1dbya_           2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGE-YKD--KLKCVKLNTDE--SPNVASEYGIRSIPT   76 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TCEEEEEETTT--CHHHHHHHTCCSSCE
T ss_pred             CceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHh-hcc--cceEEEEeccc--chhHHHHhcccceEE
Confidence            367789999988774  35799999999999999999999999855 444  68999999999  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++|++|+.+..+.|..+.+.|.+||+++++
T Consensus        77 ~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          77 IMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEEEECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999874

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-22  Score=145.80  Aligned_cols=111  Identities=34%  Similarity=0.720  Sum_probs=97.4

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ...|..|+.++|++.+++ +.++|.||++||++|+.+.|.|.+++..+......+.++.+|++.  ++.++++++|+++|
T Consensus         6 ~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P   83 (120)
T d1meka_           6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYP   83 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSS
T ss_pred             CCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc--chhHHHHhCCccCC
Confidence            357999999999998864 579999999999999999999999996654444579999999999  89999999999999


Q ss_pred             eEEEEecCee--eeeecCCCCHHHHHHHHHhhcccC
Q psy14086        287 SIYVYKNGVR--TAEYNGSRDLEELYQFILKHKVES  320 (324)
Q Consensus       287 ~l~~~~~g~~--~~~~~g~~~~~~l~~fi~~~~~~~  320 (324)
                      |+++|++|+.  ...|.|.++.++|.+||+++++.+
T Consensus        84 t~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             eEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            9999998865  346899999999999999988754

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.85  E-value=1.1e-20  Score=135.49  Aligned_cols=103  Identities=22%  Similarity=0.502  Sum_probs=93.2

Q ss_pred             CceEc-ChhhHHHHh-----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         82 GLVEL-TEESFEKYV-----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~-----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ++..+ |.++|++.+     .+++++|.||++||++|+.+.|.|++++..+.+  ++.|+.+|+++++.++++|+|+++|
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~P   80 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccccccccccccCCC
Confidence            56777 677887766     346899999999999999999999999999987  7999999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++++|++|+...++.|. +.++|.+||.++..
T Consensus        81 t~~~~~~G~~v~~~~G~-~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCc-CHHHHHHHHHHHhC
Confidence            99999999999999995 89999999998764

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=6.8e-21  Score=142.69  Aligned_cols=111  Identities=33%  Similarity=0.747  Sum_probs=92.7

Q ss_pred             CCCCCCCeeEeccccccccccC--CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC
Q psy14086        204 VPVKPEPVVSLTSENFNDVIKS--GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG  281 (324)
Q Consensus       204 ~~~~~~~v~~l~~~~~~~~~~~--~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~  281 (324)
                      +...++.|..|++++|++++.+  ++++|.||++||++|+.+.|.|+++|..+......+.++.+|++.    +++..++
T Consensus         7 p~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~----~~~~~~~   82 (140)
T d2b5ea1           7 FENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE----NDVRGVV   82 (140)
T ss_dssp             CCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG----CCCSSCC
T ss_pred             CccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc----hhccccc
Confidence            3445678999999999998843  479999999999999999999999997654444467888887654    5688999


Q ss_pred             CCccceEEEEecCee--eeeecCCCCHHHHHHHHHhhcc
Q psy14086        282 VDGFPSIYVYKNGVR--TAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       282 i~~~P~l~~~~~g~~--~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      |+++||+++|++|+.  ...|.|.++.+.|.+||+++..
T Consensus        83 v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          83 IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             CSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             cccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence            999999999998854  3468999999999999998755

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.83  E-value=4.9e-20  Score=131.93  Aligned_cols=102  Identities=21%  Similarity=0.554  Sum_probs=91.9

Q ss_pred             CCceEcChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-chhhhhhCCccccce
Q psy14086         81 EGLVELTEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-HRSICQSFDIKSYPT  156 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~  156 (324)
                      ..+.+++.++|.+.+.   +++++|.||++||++|+.+.|.|.++++++.+   +.|+.+|++. ++.++++|+|+++|+
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---v~~~~vd~~~~~~~l~~~~~V~~~Pt   82 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVPT   82 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc---ceeecccccccchhhHhheeeccCCE
Confidence            4789999999999883   34789999999999999999999999999875   7899999974 789999999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      +++|++|+.+.++.|. +.+.+.++|++..
T Consensus        83 ~~~~k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          83 FKILKENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence            9999999999999997 7789999998753

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.6e-21  Score=139.34  Aligned_cols=108  Identities=30%  Similarity=0.733  Sum_probs=96.5

Q ss_pred             CCCceEcChhhHHHHhc-CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCccccceE
Q psy14086         80 NEGLVELTEESFEKYVS-LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+.+..|+.++|++.++ ++.++|.||++||++|+.+.|.|.++++.+.+. .++.++.+|++.+..++++|+|+++||+
T Consensus         6 ~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~   85 (120)
T d1meka_           6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeE
Confidence            34789999999999884 456899999999999999999999999999763 4699999999999999999999999999


Q ss_pred             EEEeCCeE--eeeecCCCCHHHHHHHHHhhhC
Q psy14086        158 LWIESGKK--LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       158 ~~~~~g~~--~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|++|+.  ...|.|.++.++|.+||++.++
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            99998754  3568999999999999999887

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.5e-20  Score=129.70  Aligned_cols=99  Identities=21%  Similarity=0.558  Sum_probs=88.0

Q ss_pred             eEc-ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         84 VEL-TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        84 ~~l-~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .++ +.++|++.+.   +++++|.||++||++|+.+.|.+.++++.+.+   +.|+.+|+++++.++++|+|+++||+++
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKCMPTFQF   79 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc---ceeeecccccCHhHHHHcCceEEEEEEE
Confidence            344 5677888873   45789999999999999999999999999865   7899999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      |++|+.+.++.|. +.+.|.++|++++
T Consensus        80 ~~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          80 FKKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            9999999999996 7899999998764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=1.3e-19  Score=130.31  Aligned_cols=101  Identities=29%  Similarity=0.575  Sum_probs=89.3

Q ss_pred             CceEc-ChhhHHHHh-----cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         82 GLVEL-TEESFEKYV-----SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~-----~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      .+..+ |.++|++.+     .+++++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|+++++.++++|+|+++|
T Consensus         7 ~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~~~~~~l~~~~~V~~~P   83 (114)
T d1xfla_           7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN---VLFLKVDTDELKSVASDWAIQAMP   83 (114)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS---EEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             cEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc---cceeEEEeeeceeeccccceeeeE
Confidence            45555 777787655     245678999999999999999999999999875   899999999999999999999999


Q ss_pred             eEEEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        156 TLLWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++++|++|+.+.++.|. +.++|.+||.+++
T Consensus        84 t~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          84 TFMFLKEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            99999999999999995 7899999999876

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=129.03  Aligned_cols=101  Identities=19%  Similarity=0.398  Sum_probs=90.1

Q ss_pred             ceEc-ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         83 LVEL-TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        83 ~~~l-~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      +..+ |.++|++.+.   +++++|.||++||++|+.+.|.|.++++++.+   +.|+.+|+++++.++++|+|+++|+++
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~---~~f~~vd~d~~~~l~~~~~v~~~Pt~~   79 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ---AVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc---ccccccccccchhhhhhcCceeceEEE
Confidence            4444 6788988773   34678999999999999999999999999875   899999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++|+.+.++.|. +.+.|.++|++++.
T Consensus        80 ~~~~G~~v~~~~G~-~~~~l~~~i~k~le  107 (107)
T d1gh2a_          80 FFRNKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHHhhC
Confidence            99999999999995 89999999998763

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.82  E-value=5.8e-20  Score=131.72  Aligned_cols=104  Identities=25%  Similarity=0.606  Sum_probs=90.2

Q ss_pred             CCeeEe-cccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSL-TSENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l-~~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      +.|..+ +.++|++.+.     +++++|.||++||++|+.+.|.|++++.+ +..  ++.|+.+|++.  +++++++|+|
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~-~~~--~v~~~~vd~d~--~~~l~~~~~v   76 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSND-YAG--KVIFLKVDVDA--VAAVAEAAGI   76 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TSEEEEEETTT--THHHHHHHTC
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhc-ccc--eEEEEEeeccc--cccccccccc
Confidence            457777 4566777663     35899999999999999999999999966 444  69999999999  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++||+++|++|+.+..+.|. +.++|.+||.++..
T Consensus        77 ~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          77 TAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             CBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             cCCCEEEEEECCEEEEEEeCc-CHHHHHHHHHHHhC
Confidence            999999999999999899995 89999999998753

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.82  E-value=4.6e-20  Score=134.96  Aligned_cols=106  Identities=22%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             CCCeeEeccccccccccC-CcEEEEEeCCCChhh------hhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhc
Q psy14086        208 PEPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHC------KRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQE  280 (324)
Q Consensus       208 ~~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C------~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~  280 (324)
                      ...|..|++++|++++.+ +.++|.||+|||++|      ..+.+.++.+|.....  ..+.|+.||++.  +.++++++
T Consensus        10 ~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~--~~v~~a~Vd~~~--~~~l~~~~   85 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED--KGVGFGLVDSEK--DAAVAKKL   85 (124)
T ss_dssp             CCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG--GTEEEEEEETTT--SHHHHHTT
T ss_pred             CCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc--CCeEEEEEEeec--ccchhhcc
Confidence            467999999999998865 469999999999964      3444555556633222  369999999999  89999999


Q ss_pred             CCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        281 GVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       281 ~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +|+++|||++|++|+.+ .|.|.++.+.|.+||.+.+.
T Consensus        86 ~I~~yPTi~~f~~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          86 GLTEEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TCCSTTCEEEEESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             ccccCCcEEEeccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            99999999999998765 79999999999999998764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=1.3e-19  Score=129.94  Aligned_cols=102  Identities=24%  Similarity=0.562  Sum_probs=90.2

Q ss_pred             CceEc-ChhhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceE
Q psy14086         82 GLVEL-TEESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTL  157 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~  157 (324)
                      .+.++ +.++|+..+   .+++++|.||++||++|+.+.|.|++++.++++  .+.++.+|+++++.++++|+|+++|++
T Consensus         6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~~l~~~~~V~~~Pt~   83 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTF   83 (111)
T ss_dssp             CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCcchhhcCCCccccEE
Confidence            45566 567888776   345789999999999999999999999999987  899999999999999999999999999


Q ss_pred             EEEeCCeEeeeecCCCCHHHHHHHHHhhh
Q psy14086        158 LWIESGKKLDKFQGSRTLETLVNYVSKMK  186 (324)
Q Consensus       158 ~~~~~g~~~~~~~g~~~~~~i~~fi~~~~  186 (324)
                      ++|++|+.+.++.|. +.++|.+||++.+
T Consensus        84 ~~~~~G~~v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          84 VFLKNGVKVEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHTC
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHhcC
Confidence            999999999999997 5678999998753

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.82  E-value=9.8e-21  Score=137.24  Aligned_cols=105  Identities=40%  Similarity=0.832  Sum_probs=83.8

Q ss_pred             CCeeEecccccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCC--CeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTSENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKH--GIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~--~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      ++|..|++++|++.+.  +++++|.||++||++|+.+.|.|++++..+.....  .+.+...+.     ...+..++|++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~   76 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA-----TANDVPDEIQG   76 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEET-----TTSCCSSCCSS
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEeccc-----chhhhcccccC
Confidence            5799999999999873  35899999999999999999999999966433211  244555553     34456789999


Q ss_pred             cceEEEEecCee--eeeecCCCCHHHHHHHHHhhcc
Q psy14086        285 FPSIYVYKNGVR--TAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       285 ~P~l~~~~~g~~--~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +|||++|++|+.  ...|.|.++.++|.+||+++.+
T Consensus        77 ~Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          77 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CCEEEEEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            999999988753  4568999999999999998865

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.82  E-value=1.2e-19  Score=128.24  Aligned_cols=95  Identities=24%  Similarity=0.553  Sum_probs=86.4

Q ss_pred             ChhhHHHHhcC-CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE
Q psy14086         87 TEESFEKYVSL-GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK  165 (324)
Q Consensus        87 ~~~~f~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~  165 (324)
                      +.++|++.+++ ++++|.||++||++|+.+.|.+.++++++.+   +.|+.+|+++++.++++|+|+++||+++|++|+.
T Consensus         7 s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~   83 (103)
T d1syra_           7 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS   83 (103)
T ss_dssp             SHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc---eEEEeeccccCcceeeeeeeecceEEEEEECCEE
Confidence            57788888844 4678999999999999999999999999865   7899999999999999999999999999999999


Q ss_pred             eeeecCCCCHHHHHHHHHhh
Q psy14086        166 LDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       166 ~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ..++.|. +.+.|.+||+++
T Consensus        84 v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          84 VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEeCc-CHHHHHHHHHhh
Confidence            9999995 789999999875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.81  E-value=2.3e-19  Score=128.54  Aligned_cols=102  Identities=25%  Similarity=0.447  Sum_probs=90.6

Q ss_pred             CceEc-ChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEE
Q psy14086         82 GLVEL-TEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLW  159 (324)
Q Consensus        82 ~~~~l-~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~  159 (324)
                      .+.++ +.++|++.++++ .++|+||++||++|+.+.|.|++++.++.   ++.|+.+|+++++.++++|||+++|++++
T Consensus         9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccchhhHHHccccCCCEEEE
Confidence            34444 778899988555 67999999999999999999999999986   49999999999999999999999999999


Q ss_pred             EeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        160 IESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       160 ~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |++|+...++.|. +.+.+.++|++++.
T Consensus        86 ~~~G~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          86 ARSGKMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             EETTEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence            9999999999996 67888888887753

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.81  E-value=1.3e-19  Score=132.45  Aligned_cols=106  Identities=8%  Similarity=0.194  Sum_probs=90.4

Q ss_pred             CCCceEcChhhHHHHhcCC-CEEEEEeCCCCHh------HhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc
Q psy14086         80 NEGLVELTEESFEKYVSLG-NHFVKFYAPWCGH------CQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK  152 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~------c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~  152 (324)
                      .+.+.+||+++|++.+.+. .++|+||+|||++      |..+.+.++.++..+.+ ..+.|+.|||+++..+|++|+|+
T Consensus        10 ~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~-~~v~~a~Vd~~~~~~l~~~~~I~   88 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGLT   88 (124)
T ss_dssp             CCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG-GTEEEEEEETTTSHHHHHTTTCC
T ss_pred             CCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc-CCeEEEEEEeecccchhhccccc
Confidence            4568999999999988554 5799999999985      44555666667766654 25999999999999999999999


Q ss_pred             ccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++||+++|++|+.. .|.|.++.+.|.+||.+.+.
T Consensus        89 ~yPTi~~f~~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          89 EEDSIYVFKEDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             STTCEEEEESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             cCCcEEEeccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            99999999999775 69999999999999999876

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.81  E-value=2.1e-19  Score=128.61  Aligned_cols=102  Identities=27%  Similarity=0.608  Sum_probs=90.2

Q ss_pred             CCeeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCcc
Q psy14086        209 EPVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGF  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~  285 (324)
                      +.|++++.++|.+.+..   ++++|.||++||++|+.+.|.|++++++ +.   ++.|+.+|++.. +++++++|+|+++
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~-~~---~v~~~~vd~~~~-~~~l~~~~~V~~~   80 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEE-YL---DVIFLKLDCNQE-NKTLAKELGIRVV   80 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSST-THHHHHHHCCSSS
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccc-cc---cceeeccccccc-chhhHhheeeccC
Confidence            67999999999998843   4799999999999999999999999966 43   478999998641 6899999999999


Q ss_pred             ceEEEEecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        286 PSIYVYKNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       286 P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      ||+++|++|+.+..+.|. +.+.+.++|.+.
T Consensus        81 Pt~~~~k~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          81 PTFKILKENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeCC-CHHHHHHHHHHc
Confidence            999999999999999996 778999999875

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=2.9e-19  Score=127.29  Aligned_cols=103  Identities=11%  Similarity=0.204  Sum_probs=87.7

Q ss_pred             EcChhhHHHHhc-CCCE-EEEEeCCCCHhHhhHHHHHHHHHHhc--CCCCCeEEEEeccccchhhhhhCCccccceEEEE
Q psy14086         85 ELTEESFEKYVS-LGNH-FVKFYAPWCGHCQSLAPVWQELASHF--KTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWI  160 (324)
Q Consensus        85 ~l~~~~f~~~~~-~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~--~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~  160 (324)
                      +|+++.++.+.. ++++ ++.||++||++|+.+.|.+.+++...  .....+.+..+|+++++.++++|+|.++||++++
T Consensus         1 ~l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            367777776653 3444 66799999999999999999998652  2233799999999999999999999999999999


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++|+...++.|..+.+.+.++|.+.++
T Consensus        81 ~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          81 VNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             eCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            999999999999999999999998763

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=2.5e-19  Score=128.82  Aligned_cols=103  Identities=28%  Similarity=0.542  Sum_probs=88.3

Q ss_pred             CCeeEe-cccccccccc-----CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSL-TSENFNDVIK-----SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l-~~~~~~~~~~-----~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      +.|..+ +.++|++.+.     +++++|.||++||++|+.+.|.+++++.. +.   ++.|+.+|++.  +++++++|+|
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~-~~---~~~~~~vd~~~--~~~l~~~~~V   79 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LP---NVLFLKVDTDE--LKSVASDWAI   79 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHH-CS---SEEEEEEETTT--SHHHHHHTTC
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccc-cc---ccceeEEEeee--ceeeccccce
Confidence            556666 5566776553     35799999999999999999999999954 43   48999999999  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++||+++|++|+.+..+.|. +.++|.+||.+++.
T Consensus        80 ~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~la  114 (114)
T d1xfla_          80 QAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHLA  114 (114)
T ss_dssp             CSSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHCC
T ss_pred             eeeEEEEEEECCEEEEEEeCc-CHHHHHHHHHHhhC
Confidence            999999999999998889995 78999999998863

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3e-19  Score=126.60  Aligned_cols=100  Identities=26%  Similarity=0.483  Sum_probs=87.4

Q ss_pred             eeEe-cccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        211 VVSL-TSENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       211 v~~l-~~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      |..+ +.++|++.+.   ++.++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  ++++++.++|.++|
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~-~~---~~~f~~vd~d~--~~~l~~~~~v~~~P   76 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNK-YP---QAVFLEVDVHQ--CQGTAATNNISATP   76 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--SHHHHHHTTCCSSS
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccc-cc---ccccccccccc--chhhhhhcCceece
Confidence            4555 4566888774   34699999999999999999999999965 43   48999999999  99999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |+++|++|+.+..+.|. +.+.|.++|++++
T Consensus        77 t~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          77 TFQFFRNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCC-CHHHHHHHHHHhh
Confidence            99999999999999995 8999999999886

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=9.1e-20  Score=132.83  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=90.7

Q ss_pred             CeeEeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---ccchhhhhhcCC--C
Q psy14086        210 PVVSLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---ELSKDLCNQEGV--D  283 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~i--~  283 (324)
                      .+.+|++.+|++++.+. .++|.||+|||++|+  .|.|.++|+.+......+.++.+|++.   .++.+++.+|+|  .
T Consensus         3 g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           3 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             TCEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             ceEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            47799999999999764 599999999999999  499999997765555679999999865   236789999988  4


Q ss_pred             ccceEEEEecCee---eeeecCCCCHHHHHHHHHhhccc
Q psy14086        284 GFPSIYVYKNGVR---TAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       284 ~~P~l~~~~~g~~---~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      ++||+++|++|..   ...|.|.++.++|.+||+++.+.
T Consensus        81 ~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          81 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             SCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            7999999988753   33578999999999999998764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.80  E-value=2.2e-19  Score=128.62  Aligned_cols=102  Identities=22%  Similarity=0.396  Sum_probs=88.8

Q ss_pred             CeeEe-ccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccce
Q psy14086        210 PVVSL-TSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPS  287 (324)
Q Consensus       210 ~v~~l-~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~  287 (324)
                      .+.++ +.++|+++++++ .++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  ++++++.|+|+++||
T Consensus         9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~-~~---~v~~~~vd~d~--~~~l~~~~~V~~~Pt   82 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE-FP---TVKFAKVDADN--NSEIVSKCRVLQLPT   82 (113)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccc-cc---ccccccccccc--chhhHHHccccCCCE
Confidence            46666 556688888665 699999999999999999999999965 33   69999999999  899999999999999


Q ss_pred             EEEEecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        288 IYVYKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       288 l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++|++|+.+..+.|. +.+.+.++|.+.++
T Consensus        83 ~~~~~~G~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          83 FIIARSGKMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence            9999999999899995 67889888888765

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.5e-19  Score=127.00  Aligned_cols=100  Identities=26%  Similarity=0.565  Sum_probs=85.5

Q ss_pred             eeEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        211 VVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       211 v~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      |..++. ++|++.+.   +++++|.||++||++|+.+.|.+.+++.+ +.   ++.|+.+|++.  +++++.+++|+++|
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~-~~---~~~~~~vd~d~--~~~~~~~~~V~~~P   75 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEK-YS---NVIFLEVDVDD--CQDVASECEVKCMP   75 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--CHHHHHHTTCCBSS
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccc-cc---cceeeeccccc--CHhHHHHcCceEEE
Confidence            344543 55887774   35799999999999999999999999854 43   47899999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |+++|++|+.+..+.|. +.+.|.++|++.+
T Consensus        76 t~~~~~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          76 TFQFFKKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            99999999999999995 7899999998764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=4.1e-19  Score=127.25  Aligned_cols=103  Identities=27%  Similarity=0.600  Sum_probs=88.8

Q ss_pred             CCeeEecc-cccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCc
Q psy14086        209 EPVVSLTS-ENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDG  284 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~  284 (324)
                      ..|..+.+ ++|+..+.   +++++|.||++||++|+.+.|.+++++.+ +..  .+.++.+|++.  +++++++|+|++
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~-~~~--~~~~~~i~~d~--~~~l~~~~~V~~   79 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQ-FAD--NVVVLKVDVDE--CEDIAMEYNISS   79 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHH-TTT--TEEEEEEETTT--CHHHHHHTTCCS
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhh-ccc--ceEEEEEEeec--CcchhhcCCCcc
Confidence            45777765 55877663   35899999999999999999999999966 444  68999999999  899999999999


Q ss_pred             cceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        285 FPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       285 ~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +||+++|++|+.+..+.|. +.+.|.+||++++
T Consensus        80 ~Pt~~~~~~G~~v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          80 MPTFVFLKNGVKVEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             SSEEEEEETTEEEEEEESC-CHHHHHHHHHHTC
T ss_pred             ccEEEEEECCEEEEEEeCC-CHHHHHHHHHhcC
Confidence            9999999999999899996 6688999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.79  E-value=4.1e-19  Score=127.54  Aligned_cols=86  Identities=29%  Similarity=0.629  Sum_probs=79.5

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      +++++|.||++||++|+.+.|.|.++++.+.+   +.|+.+|+++++.++++|+|+++||+++|++|+.+.++.| .+.+
T Consensus        26 ~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~G-~~~~  101 (113)
T d1ti3a_          26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFPN---VTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVG-ADKD  101 (113)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS---EEEEEEETTTCHHHHHHHHCSSTTEEEEEETTEEEEEEEC-CCTT
T ss_pred             CCEEEEEEEcCccccchhhhhhhhhhhccCCC---ceEEeeeeeccccccccCeecccceEEEEECCEEEEEEcC-CCHH
Confidence            34689999999999999999999999999864   8999999999999999999999999999999999998988 4789


Q ss_pred             HHHHHHHhhh
Q psy14086        177 TLVNYVSKMK  186 (324)
Q Consensus       177 ~i~~fi~~~~  186 (324)
                      +|.+||.++.
T Consensus       102 ~l~~~i~k~a  111 (113)
T d1ti3a_         102 GLPTLVAKHA  111 (113)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.79  E-value=3.6e-19  Score=125.74  Aligned_cols=95  Identities=34%  Similarity=0.663  Sum_probs=83.8

Q ss_pred             ccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec
Q psy14086        215 TSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN  293 (324)
Q Consensus       215 ~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~  293 (324)
                      +.+.|++++++ ++++|.||++||++|+.+.|.+++++.+ +.   ++.|+.+|++.  +++++++|+|+++||+++|++
T Consensus         7 s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~-~~---~~~~~~vd~d~--~~~~~~~~~V~~~Pt~i~~k~   80 (103)
T d1syra_           7 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKT-YT---KMVFIKVDVDE--VSEVTEKENITSMPTFKVYKN   80 (103)
T ss_dssp             SHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEETTT--THHHHHHTTCCSSSEEEEEET
T ss_pred             CHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhc-cc---ceEEEeecccc--CcceeeeeeeecceEEEEEEC
Confidence            34558887765 5799999999999999999999999965 43   47899999999  899999999999999999999


Q ss_pred             CeeeeeecCCCCHHHHHHHHHhh
Q psy14086        294 GVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       294 g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      |+.+..+.|. +.+.|.+||+++
T Consensus        81 G~~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          81 GSSVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             TEEEEEEESC-CHHHHHHHHHTT
T ss_pred             CEEEEEEeCc-CHHHHHHHHHhh
Confidence            9999899995 789999999875

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.4e-19  Score=135.43  Aligned_cols=108  Identities=35%  Similarity=0.684  Sum_probs=90.8

Q ss_pred             CCCCCceEcChhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCC-CCeEEEEeccccchhhhhhCCcccc
Q psy14086         78 IVNEGLVELTEESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTE-EDVSIAKIDCTQHRSICQSFDIKSY  154 (324)
Q Consensus        78 ~~~~~~~~l~~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~  154 (324)
                      ...+.+..|+.++|++.+.  +.+++|.||++||++|+.+.|.|.+++..+++. ..+.++.+|+.  ..++++|+|+++
T Consensus         9 ~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~   86 (140)
T d2b5ea1           9 NQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGY   86 (140)
T ss_dssp             CCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSS
T ss_pred             cCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccC
Confidence            3456799999999999883  347899999999999999999999999998652 25777777764  468999999999


Q ss_pred             ceEEEEeCCeEe--eeecCCCCHHHHHHHHHhhhC
Q psy14086        155 PTLLWIESGKKL--DKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       155 P~~~~~~~g~~~--~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |++++|++|+..  ..|.|.++.+.|.+||.+...
T Consensus        87 Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          87 PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             SEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             CeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence            999999987543  458899999999999998754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.79  E-value=4.7e-20  Score=133.60  Aligned_cols=107  Identities=26%  Similarity=0.550  Sum_probs=86.9

Q ss_pred             CCceEcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         81 EGLVELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ..|..|+.++|++.+  .+++++|.||++||++|+++.|.|++++..+.......+..+++......+.+++|+++|+++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            368999999999987  344789999999999999999999999999987433323344444455667789999999999


Q ss_pred             EEeCCeE--eeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKK--LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~--~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|.+|+.  ...|.|.++.++|.+||++...
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            9988753  3468999999999999998665

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.8e-19  Score=130.38  Aligned_cols=107  Identities=17%  Similarity=0.262  Sum_probs=97.0

Q ss_pred             CceEcChhhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         82 GLVELTEESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ....++..+|+..+..   +.+++.||++||++|+++.|.|.++++++.+. .+.++.||++.++.++++|+|+++||++
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~-~~~~a~Vd~d~~~~la~~~~V~~~PT~~   96 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS-CEEEEEECHHHHHHHHHHHTCCSCCEEE
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC-cceeEEEEecCCHHHHHhhccCcceeEE
Confidence            6778999999988743   34678899999999999999999999999873 4789999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      +|++|+.+.++.|.++.++|.++|+..+.+.
T Consensus        97 ~~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          97 VFTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             EEETTEEEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             EEEcCcEeeeecCCCCHHHHHHHHHHHhCcc
Confidence            9999999999999999999999999998743

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=6e-19  Score=125.64  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             ecccccccccc-CCc-EEEEEeCCCChhhhhhhHhHHHHHHHh-hcCCCCeEEEEEecCCccchhhhhhcCCCccceEEE
Q psy14086        214 LTSENFNDVIK-SGT-VFIKFFAPWCGHCKRLAPTWEELGTKL-LDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYV  290 (324)
Q Consensus       214 l~~~~~~~~~~-~~~-~~v~f~~~~c~~C~~~~~~~~~~a~~~-~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~  290 (324)
                      |+++..+.+.. +++ +++.||++||++|+.+.|.++++|.+. ......+.+..+|++.  +++++++|+|.++||+++
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~--~~~l~~~~~V~~vPTi~i   79 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE--YPEWADQYNVMAVPKIVI   79 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG--CHHHHHHTTCCSSCEEEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc--ccccccccccccceEEEE
Confidence            34444443332 334 566799999999999999999998542 2233469999999998  899999999999999999


Q ss_pred             EecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        291 YKNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       291 ~~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      +++|+.+.++.|..+.+.+.++|.+.++
T Consensus        80 ~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          80 QVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            9999998899999999999999998763

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.78  E-value=8.8e-19  Score=125.79  Aligned_cols=102  Identities=25%  Similarity=0.480  Sum_probs=85.6

Q ss_pred             CCeeEecccc-cc----cccc-CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCC
Q psy14086        209 EPVVSLTSEN-FN----DVIK-SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGV  282 (324)
Q Consensus       209 ~~v~~l~~~~-~~----~~~~-~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i  282 (324)
                      +.|..+...+ |+    +... +++++|.||++||++|+.+.|.|++++.+ +.   ++.|+.+|++.  +++++.+|+|
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~-~~---~~~~~~vd~d~--~~~l~~~~~I   77 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKK-FP---NVTFLKVDVDE--LKAVAEEWNV   77 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHH-CS---SEEEEEEETTT--CHHHHHHHHC
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhcc-CC---CceEEeeeeec--cccccccCee
Confidence            4566666533 44    3333 35799999999999999999999999955 33   58899999999  8999999999


Q ss_pred             CccceEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        283 DGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       283 ~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      +++||+++|++|+.+..+.| .+.+.|.+||.++.
T Consensus        78 ~~~Pt~~~~k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          78 EAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             SSTTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             cccceEEEEECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence            99999999999999888888 58899999999874

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.4e-19  Score=131.41  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=95.2

Q ss_pred             CeeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        210 PVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ....++.++|++++..   +++++.|+++||++|+.+.|.|.+++++ +.+. .+.++.+|++.  +++++.+|+|+++|
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~-~~~~-~~~~a~Vd~d~--~~~la~~~~V~~~P   93 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE-FPDY-TWQVAIADLEQ--SEAIGDRFGVFRFP   93 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTT-CTTS-CEEEEEECHHH--HHHHHHHHTCCSCC
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHH-ccCC-cceeEEEEecC--CHHHHHhhccCcce
Confidence            4677888999988754   3688889999999999999999999966 4431 47899999999  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhcccCCC
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHKVESHD  322 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~~~~  322 (324)
                      |+++|++|+.+..+.|.++.+++.++|+..+...++
T Consensus        94 T~~~~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~~e  129 (132)
T d2hfda1          94 ATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_dssp             EEEEEETTEEEEEECCCSCHHHHHHHHHHHHSCSSC
T ss_pred             eEEEEEcCcEeeeecCCCCHHHHHHHHHHHhCcccc
Confidence            999999999999999999999999999988775543

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.77  E-value=4e-19  Score=128.10  Aligned_cols=105  Identities=16%  Similarity=0.264  Sum_probs=80.5

Q ss_pred             CceEcChhhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEE
Q psy14086         82 GLVELTEESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLL  158 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~  158 (324)
                      ....++..+++..+..   +.+++.|+++||++|+.+.|.|.++++++.+. ++.++.||++.++.++++|||+++|+++
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~-~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~   90 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADLEQSEAIGDRFNVRRFPATL   90 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTS-CCEEEEECHHHHHHHHHTTTCCSSSEEE
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC-ceEEEEEECCCCHHHHHhcCcCcceEEE
Confidence            5677888888877733   35688899999999999999999999999752 6899999999999999999999999999


Q ss_pred             EEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        159 WIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       159 ~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      +|++|+...++.|..+.+++.++|+..++
T Consensus        91 ~~~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          91 VFTDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             EESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999998763

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.1e-18  Score=127.10  Aligned_cols=104  Identities=21%  Similarity=0.290  Sum_probs=88.4

Q ss_pred             CceEcChhhHHHHhcCCC-EEEEEeCCCCHhHhhHHHHHHHHHHhcCC-CCCeEEEEeccc-----cchhhhhhCCc--c
Q psy14086         82 GLVELTEESFEKYVSLGN-HFVKFYAPWCGHCQSLAPVWQELASHFKT-EEDVSIAKIDCT-----QHRSICQSFDI--K  152 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~i~~~~vd~~-----~~~~~~~~~~i--~  152 (324)
                      ++.+|++++|++.+.+.+ ++|.||+|||++|++  |+|.++++.+.. ...+.++.|||+     ++..++++|+|  +
T Consensus         3 g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           3 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             TCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             ceEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            578999999999996654 789999999999994  999999998743 347999999986     46889999998  4


Q ss_pred             ccceEEEEeCCeE---eeeecCCCCHHHHHHHHHhhhC
Q psy14086        153 SYPTLLWIESGKK---LDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       153 ~~P~~~~~~~g~~---~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      ++||+++|++|..   ...|.|.++.++|.+||++..+
T Consensus        81 ~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          81 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP  118 (122)
T ss_dssp             SCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcC
Confidence            7999999998742   3357899999999999999876

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.7e-18  Score=124.03  Aligned_cols=99  Identities=13%  Similarity=0.187  Sum_probs=84.2

Q ss_pred             ChhhHHHHhc---CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC
Q psy14086         87 TEESFEKYVS---LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG  163 (324)
Q Consensus        87 ~~~~f~~~~~---~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g  163 (324)
                      +..+|++.+.   +++++|.||++||++|+.+.|.|.+++.++.+  .+.|+.||+++++.++++|+|+++||+++|.+|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            5668888873   33689999999999999999999999999987  899999999999999999999999999999999


Q ss_pred             eEeeeecC---------C-CCHHHHHHHHHhhhC
Q psy14086        164 KKLDKFQG---------S-RTLETLVNYVSKMKG  187 (324)
Q Consensus       164 ~~~~~~~g---------~-~~~~~i~~fi~~~~~  187 (324)
                      +.+..-.|         . .+.+++.+.++....
T Consensus        87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence            87643333         2 367888888886653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.75  E-value=1.7e-17  Score=119.33  Aligned_cols=100  Identities=11%  Similarity=0.168  Sum_probs=88.3

Q ss_pred             CceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----hhhhhhCCccccce
Q psy14086         82 GLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----RSICQSFDIKSYPT  156 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~  156 (324)
                      ++..++.+.+.+.+.++ +++|+||++||++|+.+.|.|.+++..+..  .+.++.++...+    ..++++|+|.++||
T Consensus        10 ~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          10 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh--hhhhheeecccccccccccccccccccccE
Confidence            67888899999888554 789999999999999999999999999977  788877765433    57899999999999


Q ss_pred             EEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        157 LLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       157 ~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                      ++++++|+...++.|..+.++|.+||.
T Consensus        88 li~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            999999999999999999999999983

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=1.1e-18  Score=125.89  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=77.6

Q ss_pred             CeeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccc
Q psy14086        210 PVVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFP  286 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P  286 (324)
                      ..+.++..++++++..   +.+++.|+++||++|+.+.|.|.++++++ .. .++.++.+|++.  +++++++|+|+++|
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~-~~-~~~~~~~Vd~d~--~~~l~~~~~V~~~P   87 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ-FDWQVAVADLEQ--SEAIGDRFNVRRFP   87 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT-SCCEEEEECHHH--HHHHHHTTTCCSSS
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhc-CC-CceEEEEEECCC--CHHHHHhcCcCcce
Confidence            4667788888887754   36888899999999999999999999663 32 268999999998  89999999999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                      |+++|++|+.+..+.|.++.+++.++|+..+
T Consensus        88 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          88 ATLVFTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999998765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=2.1e-18  Score=117.31  Aligned_cols=83  Identities=24%  Similarity=0.386  Sum_probs=74.6

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      +..+++||++||++|+.+.|.|.+++..+.+  .+.+..+|++++++++++|+|+++||++++++|    ++.|..+.++
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g----~~~G~~~~~~   76 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVINGDV----EFIGAPTKEA   76 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE----ECCSSSSSHH
T ss_pred             ceEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccccccccCCceEeeEEEEECCc----EEECCCCHHH
Confidence            4458899999999999999999999999987  799999999999999999999999999886654    3679999999


Q ss_pred             HHHHHHhhh
Q psy14086        178 LVNYVSKMK  186 (324)
Q Consensus       178 i~~fi~~~~  186 (324)
                      |.+||++.+
T Consensus        77 l~~~i~~~L   85 (85)
T d1fo5a_          77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998864

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=4.2e-18  Score=115.75  Aligned_cols=83  Identities=18%  Similarity=0.328  Sum_probs=72.3

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      +..+++||++||++|+.+.|.|++++.+ +..  .+.+..+|++.  +++++++|+|+++||++++++|+    +.|..+
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~-~~~--~~~~~~~~~d~--~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~   73 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANE-MPD--AVEVEYINVME--NPQKAMEYGIMAVPTIVINGDVE----FIGAPT   73 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHH-CSS--SEEEEEEESSS--SCCTTTSTTTCCSSEEEETTEEE----CCSSSS
T ss_pred             ceEEEEEECCCCcChHhhhhhccccccc-ccc--ccccccccccc--cccccccCCceEeeEEEEECCcE----EECCCC
Confidence            5678899999999999999999999955 443  68899999998  89999999999999998877653    568899


Q ss_pred             HHHHHHHHHhhc
Q psy14086        306 LEELYQFILKHK  317 (324)
Q Consensus       306 ~~~l~~fi~~~~  317 (324)
                      .++|.+||++++
T Consensus        74 ~~~l~~~i~~~L   85 (85)
T d1fo5a_          74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999874

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=1e-17  Score=113.58  Aligned_cols=80  Identities=21%  Similarity=0.376  Sum_probs=72.6

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      +..||++||++|+.+.|.|++++.++.+  ++.|+.+|+++++.++++|||+++|++++  +|+  .++.|..+.+.|.+
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~--~~~~G~~~~~~l~~   78 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--VRFVGAPSREELFE   78 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--EEEECSSCCHHHHH
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccchhhHHhcCceEeCEEEE--CCc--EEEEcCCCHHHHHH
Confidence            5679999999999999999999999987  89999999999999999999999999876  343  25789999999999


Q ss_pred             HHHhhh
Q psy14086        181 YVSKMK  186 (324)
Q Consensus       181 fi~~~~  186 (324)
                      ||++.+
T Consensus        79 ~i~~~l   84 (85)
T d1nhoa_          79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999875

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=121.08  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             ccccccccc---CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe
Q psy14086        216 SENFNDVIK---SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK  292 (324)
Q Consensus       216 ~~~~~~~~~---~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~  292 (324)
                      .+++++.+.   +++++|.||++||++|+.+.|.+++++.+ +.+  .+.|+.+|++.  ++++++.|+|+++||+++|+
T Consensus        10 ~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~-~~~--~v~~~~VDvd~--~~~la~~~~I~~~PT~~~f~   84 (137)
T d1qgva_          10 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEK-VKN--FAVIYLVDITE--VPDFNKMYELYDPCTVMFFF   84 (137)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHH-HTT--TEEEEEEETTT--CCTTTTSSCSCSSCEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHH-hhc--cceEEEeeccc--cchhhhhcCeeeEEEEEEEe
Confidence            456877774   34799999999999999999999999976 544  69999999999  89999999999999999999


Q ss_pred             cCeeeeeecC---------C-CCHHHHHHHHHhh
Q psy14086        293 NGVRTAEYNG---------S-RDLEELYQFILKH  316 (324)
Q Consensus       293 ~g~~~~~~~g---------~-~~~~~l~~fi~~~  316 (324)
                      +|+.+....|         . .+.+++.+.++..
T Consensus        85 ~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          85 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             TTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            9987643333         2 3677888877764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=3.4e-17  Score=117.80  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             CeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccc
Q psy14086        210 PVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFP  286 (324)
Q Consensus       210 ~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P  286 (324)
                      .+..++.+.+.+.+.+ ++++|+||++||++|+.+.|.|.+++.+ +..  .+.++.++....  ...++.++++|.++|
T Consensus        10 ~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~-~~~--~v~~v~~~~~~~~~~~~~~~~~~~V~~~P   86 (115)
T d1zmaa1          10 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAE-TKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVP   86 (115)
T ss_dssp             TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHH-HCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             eeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHH-hhh--hhhhheeeccccccccccccccccccccc
Confidence            3666677778888765 4799999999999999999999999965 433  455555443321  124678899999999


Q ss_pred             eEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        287 SIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       287 ~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                      |+++|++|+.+.++.|..+.++|.+||
T Consensus        87 Tli~~~~gk~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          87 GFVHITDGQINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred             EEEEEECCEEEEEEcCCCCHHHHHHHH
Confidence            999999999998999999999999998

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=6.8e-17  Score=117.36  Aligned_cols=103  Identities=17%  Similarity=0.289  Sum_probs=85.8

Q ss_pred             CCceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCC-----eEEEEeccccchhhhhhCC--cc
Q psy14086         81 EGLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEED-----VSIAKIDCTQHRSICQSFD--IK  152 (324)
Q Consensus        81 ~~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~-----i~~~~vd~~~~~~~~~~~~--i~  152 (324)
                      .++.+||+++|++.+.+. .++|.||+|||..|..  |.|+++|..+.+...     +.++.+||+.++.++++++  |+
T Consensus         4 ~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~   81 (122)
T d1g7ea_           4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   81 (122)
T ss_dssp             SSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred             CceEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence            468899999999999665 5699999999988764  889999998876443     5556668888999999865  77


Q ss_pred             ccceEEEEeCCeE--eeeecCCCCHHHHHHHHHhh
Q psy14086        153 SYPTLLWIESGKK--LDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       153 ~~P~~~~~~~g~~--~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++||+++|++|..  ...|.|.++.++|.+||++.
T Consensus        82 ~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          82 SYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             CCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            9999999999853  45799999999999999885

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.68  E-value=6.1e-17  Score=109.66  Aligned_cols=81  Identities=23%  Similarity=0.385  Sum_probs=70.4

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE  307 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~  307 (324)
                      .++.||++||++|+.+.|.|++++.+ +..  ++.++.+|++.  +++++.+|+|.++||+++  +|+.  .+.|..+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~-~~~--~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~~--~~~~--~~~G~~~~~   74 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKE-FGD--KIDVEKIDIMV--DREKAIEYGLMAVPAIAI--NGVV--RFVGAPSRE   74 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHH-HCS--SCCEEEECTTT--CGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccc-ccc--ccccccccccc--chhhHHhcCceEeCEEEE--CCcE--EEEcCCCHH
Confidence            35679999999999999999999966 444  69999999999  899999999999999876  4432  477999999


Q ss_pred             HHHHHHHhhc
Q psy14086        308 ELYQFILKHK  317 (324)
Q Consensus       308 ~l~~fi~~~~  317 (324)
                      .|.+||++++
T Consensus        75 ~l~~~i~~~l   84 (85)
T d1nhoa_          75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=7.1e-17  Score=117.27  Aligned_cols=103  Identities=17%  Similarity=0.351  Sum_probs=83.3

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEE-----ecCCccchhhhhhcC-
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKV-----DCTQELSKDLCNQEG-  281 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~i-----d~~~~~~~~~~~~~~-  281 (324)
                      ..+..|++++|++++.+ +.++|.||+|||.+|..  |.|+++|.. +....++..+.+     |++.  +++++.+++ 
T Consensus         4 ~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~-~~~~~~~~~~~V~~~~vd~~~--n~~l~~~~~~   78 (122)
T d1g7ea_           4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAEN-SASSDDLLVAEVGISDYGDKL--NMELSEKYKL   78 (122)
T ss_dssp             SSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHH-GGGCSSEEEEEEESCCTTSCH--HHHHHHHHTC
T ss_pred             CceEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHH-HHHHHHHhhhccceeeccccc--cHHHHHhhcc
Confidence            45889999999999966 46999999999998864  899999965 555445544444     5555  788888765 


Q ss_pred             -CCccceEEEEecCee--eeeecCCCCHHHHHHHHHhh
Q psy14086        282 -VDGFPSIYVYKNGVR--TAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       282 -i~~~P~l~~~~~g~~--~~~~~g~~~~~~l~~fi~~~  316 (324)
                       |+++|||++|++|+.  ...|.|.++.+.|.+||+++
T Consensus        79 ~I~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          79 DKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSSSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             cccCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence             779999999999853  45799999999999999987

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=9.2e-16  Score=106.05  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=69.7

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL  178 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i  178 (324)
                      ..++.|+++||++|+.+.|.|++++..+.   ++.|..+|++.+++++++|||+++||+++  +|+..  +.|.++.++|
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~--~~G~~~~~~l   89 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF--GQGRMTLTEI   89 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHHHH
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccchHHHhhcccccccEEEE--CCEEE--EecCCCHHHH
Confidence            45888999999999999999999998864   59999999999999999999999999855  77654  7899999999


Q ss_pred             HHHHH
Q psy14086        179 VNYVS  183 (324)
Q Consensus       179 ~~fi~  183 (324)
                      .++|.
T Consensus        90 ~~~le   94 (96)
T d1hyua4          90 VAKVD   94 (96)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            99874

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.8e-16  Score=111.87  Aligned_cols=98  Identities=19%  Similarity=0.273  Sum_probs=79.9

Q ss_pred             ceEcChhhHHHHhcC---CCEEEEEeCC-------CCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------cchhh
Q psy14086         83 LVELTEESFEKYVSL---GNHFVKFYAP-------WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------QHRSI  145 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~---~~~~v~f~~~-------~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------~~~~~  145 (324)
                      +...+.++|.+.+..   ++++|+||++       ||++|+.+.|.++++++.+++  ++.|+.||++       .+..+
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCcccchhhhhH
Confidence            445567888887732   3679999995       999999999999999999987  7999999984       45679


Q ss_pred             hhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        146 CQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       146 ~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                      +++|+|+++||+++|++|+.+..+.+ .+.+.+..|++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHhc
Confidence            99999999999999999987765554 46677777765

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=2.7e-15  Score=103.66  Aligned_cols=79  Identities=18%  Similarity=0.294  Sum_probs=68.6

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      ...++.|+++||++|+.+.|.|++++.. .   .++.+..+|++.  +++++++|+|+++||+++  +|+.+  +.|.++
T Consensus        16 ~~~i~~F~s~~C~~C~~~~p~~~~~a~~-~---~~i~~~~vd~~~--~~~l~~~~~I~~vPt~~~--ng~~~--~~G~~~   85 (96)
T d1hyua4          16 DFEFETYYSLSCHNCPDVVQALNLMAVL-N---PRIKHTAIDGGT--FQNEITERNVMGVPAVFV--NGKEF--GQGRMT   85 (96)
T ss_dssp             CEEEEEEECTTCSSHHHHHHHHHHHHHH-C---TTEEEEEEETTT--CHHHHHHTTCCSSSEEEE--TTEEE--EESCCC
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHh-C---CceEEEEEeccc--chHHHhhcccccccEEEE--CCEEE--EecCCC
Confidence            3578889999999999999999999944 2   269999999999  999999999999999854  77654  679999


Q ss_pred             HHHHHHHHH
Q psy14086        306 LEELYQFIL  314 (324)
Q Consensus       306 ~~~l~~fi~  314 (324)
                      .++|.++|.
T Consensus        86 ~~~l~~~le   94 (96)
T d1hyua4          86 LTEIVAKVD   94 (96)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999999884

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=110.02  Aligned_cols=100  Identities=18%  Similarity=0.315  Sum_probs=76.9

Q ss_pred             eeEeccccccccccC---CcEEEEEeCC-------CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----ccchh
Q psy14086        211 VVSLTSENFNDVIKS---GTVFIKFFAP-------WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----ELSKD  275 (324)
Q Consensus       211 v~~l~~~~~~~~~~~---~~~~v~f~~~-------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----~~~~~  275 (324)
                      +...+.+.|.+.+.+   ++++|.||++       ||++|+.+.|.+++++.. +..  ++.|+.+|++.     ..+..
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~-~~~--~~~~~~vdv~~~~~~~d~~~~   80 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKH-ISE--GCVFIYCQVGEKPYWKDPNND   80 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGG-CCT--TEEEEEEECCCHHHHHCTTCH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHh-cCC--ceEEEEEECCCCcccchhhhh
Confidence            344455667766643   4799999995       999999999999999954 444  69999999853     12567


Q ss_pred             hhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHH
Q psy14086        276 LCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFIL  314 (324)
Q Consensus       276 ~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~  314 (324)
                      ++++|+|.++||+++|++|++.....+ .+.+.+..|+.
T Consensus        81 l~~~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          81 FRKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HHHhCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHhc
Confidence            889999999999999999987765554 46677777765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.2e-14  Score=102.40  Aligned_cols=94  Identities=16%  Similarity=0.393  Sum_probs=72.1

Q ss_pred             hhhHHHHh---cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccc----cchhhhhhCCccccceE
Q psy14086         88 EESFEKYV---SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCT----QHRSICQSFDIKSYPTL  157 (324)
Q Consensus        88 ~~~f~~~~---~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~P~~  157 (324)
                      .++++..+   ++++++|.||++||++|+.+.|.+   .++...+.   .+.++.+|+.    .+..++++|+|.++|++
T Consensus        10 ~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   86 (117)
T d2fwha1          10 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDAQDVALLKHLNVLGLPTI   86 (117)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc---ceEEEecccccchhHHHHHHhhhehhhceEE
Confidence            34454444   456899999999999999999988   45555544   4666666654    45678999999999999


Q ss_pred             EEEeC-CeEee--eecCCCCHHHHHHHHHh
Q psy14086        158 LWIES-GKKLD--KFQGSRTLETLVNYVSK  184 (324)
Q Consensus       158 ~~~~~-g~~~~--~~~g~~~~~~i~~fi~~  184 (324)
                      ++|++ |+...  ++.|.++++++.++|++
T Consensus        87 ~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          87 LFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             EEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            99975 65543  56799999999999976

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.2e-14  Score=104.60  Aligned_cols=90  Identities=19%  Similarity=0.321  Sum_probs=67.9

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--ccchhhhhhcCCCccceEEEEe-cCeeee--e
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--ELSKDLCNQEGVDGFPSIYVYK-NGVRTA--E  299 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~P~l~~~~-~g~~~~--~  299 (324)
                      +++++|.||++||++|+.+.|.+..++.. .....++.+..+|...  ..+.++++.|+|.++||+++|. +|+.+.  .
T Consensus        22 gK~vlv~F~a~wC~~C~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~  100 (117)
T d2fwha1          22 GKPVMLDLYADWCVACKEFEKYTFSDPQV-QKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQAR  100 (117)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHTTTSHHH-HHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGC
T ss_pred             CCeEEEEEecccCCcccccchhHHhHHHH-HHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEeCCCcEEeccc
Confidence            46899999999999999999988443321 1112246777777654  1245678999999999999994 676643  4


Q ss_pred             ecCCCCHHHHHHHHHh
Q psy14086        300 YNGSRDLEELYQFILK  315 (324)
Q Consensus       300 ~~g~~~~~~l~~fi~~  315 (324)
                      +.|.++.+.+.++|++
T Consensus       101 ~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1         101 VTGFMDAETFSAHLRD  116 (117)
T ss_dssp             BCSCCCHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHhc
Confidence            6799999999999986

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=5.1e-13  Score=106.13  Aligned_cols=101  Identities=20%  Similarity=0.302  Sum_probs=84.8

Q ss_pred             CCceEcC-hhhHHHHhcC-C---CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccc
Q psy14086         81 EGLVELT-EESFEKYVSL-G---NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYP  155 (324)
Q Consensus        81 ~~~~~l~-~~~f~~~~~~-~---~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P  155 (324)
                      ..+.+++ .++|...+.+ +   .++|.||++||++|+.+.+.|..||.+|..   +.|++||++..+ +...|++..+|
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~---vkF~ki~~~~~~-~~~~~~i~~lP  174 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM---VKFCKIRASNTG-AGDRFSSDVLP  174 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT---SEEEEEEHHHHT-CSTTSCGGGCS
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc---ceEEEEccccch-hHHhCCCCCCC
Confidence            4688885 5788887732 2   368999999999999999999999999975   999999988654 66899999999


Q ss_pred             eEEEEeCCeEeeeecC-------CCCHHHHHHHHHhh
Q psy14086        156 TLLWIESGKKLDKFQG-------SRTLETLVNYVSKM  185 (324)
Q Consensus       156 ~~~~~~~g~~~~~~~g-------~~~~~~i~~fi~~~  185 (324)
                      ++++|++|+.+.++.|       .++.++|..||.++
T Consensus       175 tl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         175 TLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             eEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            9999999998887765       35788899888764

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=4.2e-13  Score=106.64  Aligned_cols=101  Identities=18%  Similarity=0.299  Sum_probs=83.0

Q ss_pred             CCeeEecc-ccccccccC----CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC
Q psy14086        209 EPVVSLTS-ENFNDVIKS----GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD  283 (324)
Q Consensus       209 ~~v~~l~~-~~~~~~~~~----~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~  283 (324)
                      +.|..|+. +.|.+.+..    ..|+|.||++||++|+.+.|.|..+|.+ +.   .+.|+.||++.  .+ +...|++.
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~-~~---~vkF~ki~~~~--~~-~~~~~~i~  171 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAE-YP---MVKFCKIRASN--TG-AGDRFSSD  171 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTT-CT---TSEEEEEEHHH--HT-CSTTSCGG
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhh-cc---cceEEEEcccc--ch-hHHhCCCC
Confidence            67999975 668877742    2489999999999999999999999965 33   59999999886  44 55789999


Q ss_pred             ccceEEEEecCeeeeeecC-------CCCHHHHHHHHHhh
Q psy14086        284 GFPSIYVYKNGVRTAEYNG-------SRDLEELYQFILKH  316 (324)
Q Consensus       284 ~~P~l~~~~~g~~~~~~~g-------~~~~~~l~~fi~~~  316 (324)
                      ++|||++|++|+.+..+.|       ..+.+.|..||.++
T Consensus       172 ~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         172 VLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             GCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            9999999999998776655       25678999999876

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.7e-13  Score=98.35  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------ccchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------ELSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------~~~~~~~~~~~i  282 (324)
                      ++++++|.||++||++|+...|.+++++.+      ++.+..++.+.                     ..+..+...|++
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v   92 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV   92 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTC
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhh------hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhccc
Confidence            567999999999999999999999998743      23333333332                     113457788999


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhcc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKV  318 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~  318 (324)
                      .++|+.+++ ++|+.+..+.|..+.+.+.+.|.+.+.
T Consensus        93 ~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          93 YGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             CSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             CCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            999999888 578888888999898888877776654

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2.7e-12  Score=94.61  Aligned_cols=89  Identities=10%  Similarity=0.127  Sum_probs=68.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhhhCCcccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQSFDIKSY  154 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~~~~i~~~  154 (324)
                      +.++++|.||++||++|+..+|.+++++...-   .+..+.++.+                     .+..+.+.|++.++
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~---~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   95 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQGI---RVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA   95 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTTC---CEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSB
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhhh---hhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCc
Confidence            56789999999999999999999999876521   2333333221                     22457888999999


Q ss_pred             ceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        155 PTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       155 P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |+.++++. |+...++.|..+.+.+.+.|++.+.
T Consensus        96 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          96 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             SEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             ceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            99999976 7777789999999988888877664

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.34  E-value=5.3e-12  Score=93.90  Aligned_cols=105  Identities=16%  Similarity=0.226  Sum_probs=77.7

Q ss_pred             eeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------
Q psy14086        211 VVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------  270 (324)
Q Consensus       211 v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------  270 (324)
                      +...+++... ....+++++|.||++||++|+...|.+.++..++...  ++.+..+....                   
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~   85 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLNY   85 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC--CcEEEEEeeeecccccchhhhhhhhhhcCC
Confidence            4444444422 2234678999999999999999999999998664433  45555555432                   


Q ss_pred             -------ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhc
Q psy14086        271 -------ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHK  317 (324)
Q Consensus       271 -------~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~  317 (324)
                             +.+..+.+.|+++++|+++++ ++|+.+..+.|..+.+.+.++|++..
T Consensus        86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             cccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence                   012366788999999999999 67888778899999999999998654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=7.8e-12  Score=91.86  Aligned_cols=87  Identities=22%  Similarity=0.452  Sum_probs=70.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------cchhhhhhCCcc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------QHRSICQSFDIK  152 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------~~~~~~~~~~i~  152 (324)
                      ..++++|.||++||++|+..+|.+.++++++++   +.++.++..                       ....+.+.||+.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~  100 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCC
Confidence            466899999999999999999999999999875   444444332                       124688889999


Q ss_pred             ccceEEEEeCCeEeeeecCCCCHHHHHHHHHhh
Q psy14086        153 SYPTLLWIESGKKLDKFQGSRTLETLVNYVSKM  185 (324)
Q Consensus       153 ~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~  185 (324)
                      ++|++++++....+..+.|..+.++|.+.|+.+
T Consensus       101 ~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         101 QQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             SSSEEEEECTTCCEEEEESCCCHHHHHHHHHHH
T ss_pred             ccCeEEEECCCCeEEEEECCCCHHHHHHHHHhh
Confidence            999999998744455578999999999999865

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.29  E-value=1.2e-11  Score=91.95  Aligned_cols=91  Identities=21%  Similarity=0.346  Sum_probs=73.6

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------cchhhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------QHRSICQ  147 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~~~~~~  147 (324)
                      +++++++.||++||++|+..+|.+.++.++++.. .+.++.+...                            ....+++
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            4568899999999999999999999999998753 4555544431                            1246788


Q ss_pred             hCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        148 SFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       148 ~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .||++++|++++++. |+...++.|..+.+.+.++|++...
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~a  141 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNA  141 (143)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTS
T ss_pred             HcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            999999999999965 7777788999999999999987543

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=2.3e-11  Score=89.22  Aligned_cols=101  Identities=18%  Similarity=0.342  Sum_probs=74.4

Q ss_pred             CeeEeccccc--cccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------
Q psy14086        210 PVVSLTSENF--NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------  270 (324)
Q Consensus       210 ~v~~l~~~~~--~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------  270 (324)
                      .+..++++.+  .+ ..+++++|.||++||++|+...|.+.+++.+ +.   ++.++.++...                 
T Consensus         9 ~~~~~~G~~~~l~~-~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~-~~---~~~~v~v~~~d~~~~~~~~~~~~~~~~~   83 (134)
T d1zzoa1           9 SAKTLDGHDFHGES-LLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS-HP---EVTFVGVAGLDQVPAMQEFVNKYPVKTF   83 (134)
T ss_dssp             EEEBTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSSCHHHHHHHHHHTTCTTS
T ss_pred             eEEcCCCCEEeHHH-hCCCEEEEEecccccCcccccchhhHHHHhh-hc---ccccccccccccchhHHHHHHhcCCcce
Confidence            3555555553  33 3568999999999999999999999999965 33   34555555433                 


Q ss_pred             ----ccchhhhhhcCCCccceEEEEe-cCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        271 ----ELSKDLCNQEGVDGFPSIYVYK-NGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       271 ----~~~~~~~~~~~i~~~P~l~~~~-~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                          +....+...|++.++|+++++. +|+ +..+.|..+.++|.+.|++.
T Consensus        84 ~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~-i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          84 TQLADTDGSVWANFGVTQQPAYAFVDPHGN-VDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             EEEECTTCHHHHHTTCCSSSEEEEECTTCC-EEEEESCCCHHHHHHHHHHH
T ss_pred             eEEeeccchHHHhcCCCccCeEEEECCCCe-EEEEECCCCHHHHHHHHHhh
Confidence                1234777889999999999995 555 44567889999999988764

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=2.6e-11  Score=90.04  Aligned_cols=90  Identities=12%  Similarity=0.349  Sum_probs=72.8

Q ss_pred             HHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhh
Q psy14086         93 KYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSI  145 (324)
Q Consensus        93 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~  145 (324)
                      +...++++++.||++||++|....|.+.++++++++  ++.++.++..                           ....+
T Consensus        25 ~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~  102 (143)
T d2b5xa1          25 QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHAL  102 (143)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHH
T ss_pred             HHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhccCccccccCccch
Confidence            334567889999999999999999999999999987  5666666542                           11347


Q ss_pred             hhhCCccccceEEEEeC-CeEeeeecCCCCHHHHHHHHHh
Q psy14086        146 CQSFDIKSYPTLLWIES-GKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       146 ~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      ++.|++.++|++++++. |....++.|..+.+.+.+-|++
T Consensus       103 ~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         103 TDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             HHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             HHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            77889999999999966 7777788899999999888875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.24  E-value=2.2e-11  Score=90.59  Aligned_cols=90  Identities=17%  Similarity=0.261  Sum_probs=70.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc---------------------ccchhhhhhCCcccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC---------------------TQHRSICQSFDIKSY  154 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~---------------------~~~~~~~~~~~i~~~  154 (324)
                      ++++++|.||++||++|+..+|.+.++...+..  .+..+.++.                     +.+..+.+.|++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF--QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS--EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc--eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            356889999999999999999999999877643  333333322                     123568889999999


Q ss_pred             ceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        155 PTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       155 P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      |+.++++. |+...++.|..+.+++.+.|++.+.
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            99999975 7777888999999999998887653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=6.5e-11  Score=87.80  Aligned_cols=102  Identities=20%  Similarity=0.317  Sum_probs=75.3

Q ss_pred             eeEeccccc-cccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------
Q psy14086        211 VVSLTSENF-NDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------  270 (324)
Q Consensus       211 v~~l~~~~~-~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------  270 (324)
                      ...++++.. .+...+++++|.||++||++|+...|.++++.++ +..  ++.+..++.+.                   
T Consensus        14 ~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~-~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~   90 (143)
T d2b5xa1          14 KAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDK-YQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDI   90 (143)
T ss_dssp             SEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-HTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTC
T ss_pred             ccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhh-hhc--cccceeEEeeccccccchhhhhhHHHhhcc
Confidence            333454432 3344567899999999999999999999999966 444  46666665432                   


Q ss_pred             ------ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        271 ------ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       271 ------~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                            +....+.+.|+++++|+++++ ++|+.+..+.|..+.+.+.+.|++
T Consensus        91 ~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          91 TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             CccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence                  012356778899999999988 578887788999898999888765

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.22  E-value=1.7e-11  Score=91.21  Aligned_cols=91  Identities=21%  Similarity=0.412  Sum_probs=69.6

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------ccchhhhhhcCC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------ELSKDLCNQEGV  282 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------~~~~~~~~~~~i  282 (324)
                      .+++++|.||++||++|+...|.+.++... +    ++.+..+....                     +.+..+.+.|++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~-~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  104 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-K----RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV  104 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-T----TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhc-c----CceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCc
Confidence            457899999999999999999999988733 2    23333333222                     123467888999


Q ss_pred             CccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        283 DGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       283 ~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .++|+++++ ++|+.+..+.|..+.+++.+.|.+.+.+
T Consensus       105 ~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~k  142 (144)
T d1knga_         105 YGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  142 (144)
T ss_dssp             CSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             cccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            999999988 4788888889999999999988877653

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=6.3e-11  Score=86.82  Aligned_cols=86  Identities=17%  Similarity=0.387  Sum_probs=68.4

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------chhhhhhCCccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------HRSICQSFDIKS  153 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------~~~~~~~~~i~~  153 (324)
                      ..++++|.||++||++|+...|.+.+++.++++   +.++.++.+.                      ...+++.||+++
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~   99 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA---VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhcc---ccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCc
Confidence            466889999999999999999999999998764   6666666542                      256888899999


Q ss_pred             cceEEEEeC-CeEe--eeecCCCCHHHHHHHHHh
Q psy14086        154 YPTLLWIES-GKKL--DKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       154 ~P~~~~~~~-g~~~--~~~~g~~~~~~i~~fi~~  184 (324)
                      +|++++++. |+..  ....|..+.++|.+-|.+
T Consensus       100 ~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         100 QPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            999999976 5432  234577899999988865

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=9.9e-11  Score=85.74  Aligned_cols=102  Identities=16%  Similarity=0.369  Sum_probs=74.7

Q ss_pred             CeeEeccccccc-cccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------------------
Q psy14086        210 PVVSLTSENFND-VIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------------  270 (324)
Q Consensus       210 ~v~~l~~~~~~~-~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------------  270 (324)
                      .+..++++.+.- -..+++++|.||++||++|+...|.+++++.+ +.   ++.++.++.+.                  
T Consensus         8 ~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~-~~---~v~~v~v~~~~~~~~~~~~~~~~~~~~p~   83 (134)
T d1lu4a_           8 TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA-NP---AVTFVGIATRADVGAMQSFVSKYNLNFTN   83 (134)
T ss_dssp             EEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CT---TSEEEEEECSSCHHHHHHHHHHHTCCSEE
T ss_pred             eeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhh-hc---cccccccccccchhhhhhhhhhhccccce
Confidence            355556666432 23567999999999999999999999999854 32   46777777654                  


Q ss_pred             --ccchhhhhhcCCCccceEEEEe-cCeeee--eecCCCCHHHHHHHHHh
Q psy14086        271 --ELSKDLCNQEGVDGFPSIYVYK-NGVRTA--EYNGSRDLEELYQFILK  315 (324)
Q Consensus       271 --~~~~~~~~~~~i~~~P~l~~~~-~g~~~~--~~~g~~~~~~l~~fi~~  315 (324)
                        +....+.+.|++.++|+++++. +|+...  ...|..+.++|.+.|.+
T Consensus        84 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          84 LNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             EECTTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             eeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence              1234677889999999999995 665432  34567889999988764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.16  E-value=1.6e-10  Score=84.95  Aligned_cols=104  Identities=15%  Similarity=0.368  Sum_probs=77.3

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------------------
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------------  270 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------------  270 (324)
                      .+..++++.+. +-..+++++|.||++||++|....+.+.++..++...  ++.+..++.+.                  
T Consensus         9 ~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~   86 (137)
T d1st9a_           9 VLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSYGVNFPV   86 (137)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHTTCCSCE
T ss_pred             EEECCCcCEEeHHHhCCCEEEEEEeeccccceeeccccccccccccccc--ccccccccccchhhhHHHHHHHcCCCccc
Confidence            34444444432 1235678999999999999999999999999775444  57777777543                  


Q ss_pred             --ccchhhhhhcCCCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        271 --ELSKDLCNQEGVDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       271 --~~~~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                        +....+...|++.++|+++++ ++|+.+..+.|..+.+.+.++++.
T Consensus        87 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_          87 VLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             EEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence              012366788999999999999 567777788899998888887753

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.16  E-value=7.1e-11  Score=87.53  Aligned_cols=67  Identities=22%  Similarity=0.447  Sum_probs=56.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc------------------------hhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------------RSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~------------------------~~~~~~~~i  151 (324)
                      +.+.++|+||++||++|+..+|.+.+++++++.+..+.++.|+.+..                        ..+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            46678999999999999999999999999998755677777766532                        236788999


Q ss_pred             cccceEEEEeC
Q psy14086        152 KSYPTLLWIES  162 (324)
Q Consensus       152 ~~~P~~~~~~~  162 (324)
                      +++|++++++.
T Consensus       107 ~~iPt~~lid~  117 (144)
T d1i5ga_         107 KSIPTLVGVEA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCcCEEEEEeC
Confidence            99999999975

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=3.2e-11  Score=83.20  Aligned_cols=80  Identities=16%  Similarity=0.274  Sum_probs=68.6

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHH
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETL  178 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i  178 (324)
                      +.+++|+++||++|+.+.+.|+++...+    ...++.+|.+.++.+.++|+++ +|++++  +|+..  ..|.++.+.|
T Consensus        17 p~i~lft~~~C~~C~~a~~~L~~~~~~~----~~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~~L   87 (100)
T d1wjka_          17 PVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTSKL   87 (100)
T ss_dssp             CEEEEEECSSCHHHHHHHHHTSTTSSSS----EEEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHhhhhc----ceEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHHHH
Confidence            6789999999999999999999998776    4678899999999999999987 997654  56554  4688999999


Q ss_pred             HHHHHhhhC
Q psy14086        179 VNYVSKMKG  187 (324)
Q Consensus       179 ~~fi~~~~~  187 (324)
                      .++|++..+
T Consensus        88 ~~~L~~l~~   96 (100)
T d1wjka_          88 EKQLRKLSG   96 (100)
T ss_dssp             HHHHHSSSC
T ss_pred             HHHHHHHhc
Confidence            999988665

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.13  E-value=2.2e-10  Score=84.16  Aligned_cols=88  Identities=24%  Similarity=0.547  Sum_probs=72.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----------------------hhhhhhCCccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----------------------RSICQSFDIKS  153 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----------------------~~~~~~~~i~~  153 (324)
                      ..++++|.||++||++|....+.+.++.+++... ++.++.++.+.+                      ..+++.|++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc
Confidence            4557899999999999999999999999998763 577777665322                      46778899999


Q ss_pred             cceEEEEeC-CeEeeeecCCCCHHHHHHHHHh
Q psy14086        154 YPTLLWIES-GKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       154 ~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                      +|++++++. |+...++.|..+.+.+.++++.
T Consensus       103 ~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            999999977 6666778899999998888754

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=1.7e-10  Score=89.26  Aligned_cols=92  Identities=12%  Similarity=0.220  Sum_probs=73.3

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------------cchhhh
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------------QHRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------------~~~~~~  146 (324)
                      ..+.++|.||++||++|+...|.+.+++++|++  ++.|+.++..                             ....++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            456789999999999999999999999999987  6888777531                             125688


Q ss_pred             hhCCccccceEEEEeCCeEeeeecCCC----------CHHHHHHHHHhhhCCCC
Q psy14086        147 QSFDIKSYPTLLWIESGKKLDKFQGSR----------TLETLVNYVSKMKGPLN  190 (324)
Q Consensus       147 ~~~~i~~~P~~~~~~~g~~~~~~~g~~----------~~~~i~~fi~~~~~~~~  190 (324)
                      +.|++..+|++++++....+ +|.|.+          +...|.+-|++.+.+..
T Consensus       109 ~~~~v~~~P~~~liD~~G~i-~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~  161 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERRLL-RYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  161 (187)
T ss_dssp             HHTTCCEESEEEEECTTCBE-EEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             ccccccceeeEEEEcCCCeE-EEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCC
Confidence            89999999999999885444 366643          44578899999998763

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.2e-10  Score=86.24  Aligned_cols=91  Identities=14%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             CCcEEEEEeCCCChhhhhhhH-hH--HHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEe--cCeeeee
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAP-TW--EELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYK--NGVRTAE  299 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~-~~--~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~--~g~~~~~  299 (324)
                      +++++|+|+++||.+|+.+.. .|  .++. +++..  ++.+..+|.+..+...+.+.|++.++|+++++.  .|+.+..
T Consensus        42 ~K~llV~~~~~~C~~C~~m~~~v~~d~~V~-~~l~~--~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~  118 (147)
T d2dlxa1          42 NKWLMINIQNVQDFACQCLNRDVWSNEAVK-NIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (147)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHH-HHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             CCcEEEEEecCCCCchHHHHHhccCCHHHH-HHHhh--heeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEecc
Confidence            468999999999999999865 33  3343 43443  688999998885567889999999999999994  4666544


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q psy14086        300 YNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       300 ~~g~~~~~~l~~fi~~~~~~  319 (324)
                      + |..+.+++.+.|++++.+
T Consensus       119 ~-~~~~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1         119 W-HQLDVSSFLDQVTGFLGE  137 (147)
T ss_dssp             E-SSCCHHHHHHHHHHHHHH
T ss_pred             c-CCCCHHHHHHHHHHHHhh
Confidence            4 557889888888887764

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.6e-10  Score=84.42  Aligned_cols=91  Identities=11%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHH---HHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeC--CeEeee
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVW---QELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIES--GKKLDK  168 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~--g~~~~~  168 (324)
                      ++++++|+|+++||.+|+.+....   .++.+.+..  ++.++.+|.+  +...++++|++.++|+++++++  |+.+ +
T Consensus        41 ~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v-~  117 (147)
T d2dlxa1          41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKL-V  117 (147)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCC-E
T ss_pred             cCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEe-c
Confidence            566789999999999999986633   344444443  6888888876  4478999999999999999975  5554 4


Q ss_pred             ecCCCCHHHHHHHHHhhhCCC
Q psy14086        169 FQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       169 ~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      .-|.++++++.+.+++++...
T Consensus       118 ~~~~~~~~~fl~~L~~fl~~~  138 (147)
T d2dlxa1         118 EWHQLDVSSFLDQVTGFLGEH  138 (147)
T ss_dssp             EESSCCHHHHHHHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHHHHHHhhC
Confidence            457789999999999988743

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=6.2e-11  Score=81.72  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      -+++++|+++||++|+.+.+.+++++.+ +    ...+..+|.+.  ++++.++|+++ +|++++  +|+..  ..|..+
T Consensus        16 ~p~i~lft~~~C~~C~~a~~~L~~~~~~-~----~~~~v~vd~~~--~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d   83 (100)
T d1wjka_          16 LPVLTLFTKAPCPLCDEAKEVLQPYKDR-F----ILQEVDITLPE--NSTWYERYKFD-IPVFHL--NGQFL--MMHRVN   83 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSSS-S----EEEEEETTSST--THHHHHHSSSS-CSEEEE--SSSEE--EESSCC
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHhhhh-c----ceEEEeccccc--CHHHHHHhccc-CCceee--cCceE--EeCCCC
Confidence            4789999999999999999999988733 2    35667777777  89999999997 997644  67664  457889


Q ss_pred             HHHHHHHHHhhccc
Q psy14086        306 LEELYQFILKHKVE  319 (324)
Q Consensus       306 ~~~l~~fi~~~~~~  319 (324)
                      .+.|.++|++..+.
T Consensus        84 ~~~L~~~L~~l~~~   97 (100)
T d1wjka_          84 TSKLEKQLRKLSGP   97 (100)
T ss_dssp             HHHHHHHHHSSSCS
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999876543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.05  E-value=3.1e-10  Score=84.08  Aligned_cols=67  Identities=24%  Similarity=0.537  Sum_probs=56.1

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc------------------------hhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------------RSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~------------------------~~~~~~~~i  151 (324)
                      ..+.++|.||++||++|+..+|.++++++++..+..+.++.|+.+..                        ..+.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            45678999999999999999999999999997655687787766432                        247788999


Q ss_pred             cccceEEEEeC
Q psy14086        152 KSYPTLLWIES  162 (324)
Q Consensus       152 ~~~P~~~~~~~  162 (324)
                      +++|++++++.
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            99999999985

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.03  E-value=4.5e-10  Score=83.07  Aligned_cols=76  Identities=16%  Similarity=0.279  Sum_probs=57.2

Q ss_pred             ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------------------chhhhh
Q psy14086        221 DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------------------SKDLCN  278 (324)
Q Consensus       221 ~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------------------~~~~~~  278 (324)
                      +-+.++.++|.||++||++|+...|.+.++.++ +.....+.++.++.+...                      ...+.+
T Consensus        24 s~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~-~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  102 (144)
T d1i5ga_          24 PSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKA-HAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTT  102 (144)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred             HHcCCCEEEEEEEecCCchHhhhhHhHHHHHHH-HHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHH
Confidence            334578999999999999999999999999866 444446778888776510                      123567


Q ss_pred             hcCCCccceEEEEe-cCeee
Q psy14086        279 QEGVDGFPSIYVYK-NGVRT  297 (324)
Q Consensus       279 ~~~i~~~P~l~~~~-~g~~~  297 (324)
                      .|+|.++|+++++. +++++
T Consensus       103 ~y~v~~iPt~~lid~~~G~v  122 (144)
T d1i5ga_         103 GFDVKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             HTTCCSSSEEEEEETTTCCE
T ss_pred             HCCCCCcCEEEEEeCCCCEE
Confidence            89999999999996 43343

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=84.98  Aligned_cols=90  Identities=18%  Similarity=0.306  Sum_probs=61.2

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhh-cCCCccceEEEE-ecCeeeeeecC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQ-EGVDGFPSIYVY-KNGVRTAEYNG  302 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~-~~i~~~P~l~~~-~~g~~~~~~~g  302 (324)
                      +++++|.||++||++|+.+.|.+.+... ......++..+.+|.+.  .+..... ....++|+++++ ++|+....+.|
T Consensus        25 ~Kpvlv~F~a~wC~~C~~~~~~~~~~~~-~~~~~~~fv~v~vd~~~--~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~g  101 (135)
T d1sena_          25 GLPLMVIIHKSWCGACKALKPKFAESTE-ISELSHNFVMVNLEDEE--EPKDEDFSPDGGYIPRILFLDPSGKVHPEIIN  101 (135)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHTCHH-HHHHHTTSEEEEEEGGG--SCSCGGGCTTCSCSSEEEEECTTSCBCTTCCC
T ss_pred             CCcEEEEEEecCCCCceecchhhhhhHH-HHHhcCCcEEEeCCCCc--CHHHHHHHhhcccceeEEEECCCCeEEEEecC
Confidence            5799999999999999999999876552 22223368888999877  4554443 344568999999 46766544444


Q ss_pred             ----------CCCHHHHHHHHHhhc
Q psy14086        303 ----------SRDLEELYQFILKHK  317 (324)
Q Consensus       303 ----------~~~~~~l~~fi~~~~  317 (324)
                                ..+.+.+.+-+++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~a~  126 (135)
T d1sena_         102 ENGNPSYKYFYVSAEQVVQGMKEAQ  126 (135)
T ss_dssp             TTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCCCcchhccCCCHHHHHHHHHHHH
Confidence                      234566655555443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.6e-10  Score=82.76  Aligned_cols=91  Identities=18%  Similarity=0.285  Sum_probs=64.8

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhC-CccccceEEEEeC-CeEeeeecC--
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSF-DIKSYPTLLWIES-GKKLDKFQG--  171 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~-~i~~~P~~~~~~~-g~~~~~~~g--  171 (324)
                      ++++++|.||++||++|+.+.+.+.+.........++..+.+|++.....+..+ ....+|+++++++ |+....+.|  
T Consensus        24 ~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~g~~  103 (135)
T d1sena_          24 SGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINEN  103 (135)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTT
T ss_pred             cCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEEEecCCC
Confidence            677899999999999999999998766543332236899999988776666544 4446899999976 655544444  


Q ss_pred             --------CCCHHHHHHHHHhhh
Q psy14086        172 --------SRTLETLVNYVSKMK  186 (324)
Q Consensus       172 --------~~~~~~i~~fi~~~~  186 (324)
                              ..+.+.+.+-+++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~a~  126 (135)
T d1sena_         104 GNPSYKYFYVSAEQVVQGMKEAQ  126 (135)
T ss_dssp             SCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCcchhccCCCHHHHHHHHHHHH
Confidence                    235566666655544

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.00  E-value=4.3e-09  Score=76.58  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             CceEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCcc--ccceEE
Q psy14086         82 GLVELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIK--SYPTLL  158 (324)
Q Consensus        82 ~~~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~  158 (324)
                      -+.++|.+++..+.+.+ +.++.|+.. ....+.+...+.++|+++++  ++.|+.+|...+..+.+.||+.  ..|.++
T Consensus         7 Lv~e~~~~n~~~~~~~~~pl~~lf~~~-~~~~~~~~~~~~~vA~~~~~--ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~   83 (133)
T d2djka1           7 LIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAFA   83 (133)
T ss_dssp             CSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEEE
T ss_pred             ceeccChhhHHHHhcCCCCEEEEEeCC-chHHHHHHHHHHHHHHHhcC--ceEEEEEeHHHhHHHHHHhcCCcccCCcEE
Confidence            68899999999998665 445555544 45678899999999999998  8999999999988999999995  589999


Q ss_pred             EEeCC-eEeeee--cCCCCHHHHHHHHHhhhCCCCCCCC
Q psy14086        159 WIESG-KKLDKF--QGSRTLETLVNYVSKMKGPLNKKAD  194 (324)
Q Consensus       159 ~~~~g-~~~~~~--~g~~~~~~i~~fi~~~~~~~~~~~~  194 (324)
                      ++... .....|  .+.++.++|.+||++++.|+.++..
T Consensus        84 i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~~  122 (133)
T d2djka1          84 IQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSI  122 (133)
T ss_dssp             EECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSS
T ss_pred             EEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCccc
Confidence            88653 333333  3568999999999999999866554

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.96  E-value=1.6e-09  Score=80.21  Aligned_cols=72  Identities=18%  Similarity=0.418  Sum_probs=57.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc------------------------hhhhhhCCc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH------------------------RSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~------------------------~~~~~~~~i  151 (324)
                      ..++++|+||++||++|....+.+.++++++.....+.++.++.+..                        ..+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            45678999999999999999999999999997755677776665422                        357888999


Q ss_pred             cccceEEEEeC-CeEee
Q psy14086        152 KSYPTLLWIES-GKKLD  167 (324)
Q Consensus       152 ~~~P~~~~~~~-g~~~~  167 (324)
                      +++|++++++. +..+.
T Consensus       105 ~~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVV  121 (144)
T ss_dssp             CSSSEEEEEETTTCCEE
T ss_pred             CcCCEEEEEeCCCCEEE
Confidence            99999999985 34443

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=2.7e-09  Score=82.33  Aligned_cols=105  Identities=9%  Similarity=0.165  Sum_probs=72.9

Q ss_pred             CCeeEecccc--ccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC----------------
Q psy14086        209 EPVVSLTSEN--FNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ----------------  270 (324)
Q Consensus       209 ~~v~~l~~~~--~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~----------------  270 (324)
                      -.+..++++.  +.++ .+++++|.||++||++|+...|.+.+++++ +..  ++.+..++...                
T Consensus        15 F~l~d~~G~~~~Lsd~-kGk~vvl~FwatwCp~C~~~~p~l~~l~~~-y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~   90 (187)
T d2cvba1          15 AELPDPRGGRYRLSQF-HEPLLAVVFMCNHCPYVKGSIGELVALAER-YRG--KVAFVGINANDYEKYPEDAPEKMAAFA   90 (187)
T ss_dssp             CEEECTTSCEEEGGGC-CSSEEEEEEECSSCHHHHTTHHHHHHHHHH-TTT--TEEEEEEECCCTTTCGGGSHHHHHHHH
T ss_pred             cEeecCCCCEEEHHHh-CCCeEEEEEeCCCCccchhhhhhhhhhhhh-ccc--cceeeeeeccccccccccchHHHHHHH
Confidence            3455555555  3333 467899999999999999999999999966 554  57777776421                


Q ss_pred             -----------ccchhhhhhcCCCccceEEEEecCeeeeeecCCC----------CHHHHHHHHHhhcc
Q psy14086        271 -----------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR----------DLEELYQFILKHKV  318 (324)
Q Consensus       271 -----------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~----------~~~~l~~fi~~~~~  318 (324)
                                 +....+.+.|++.++|+++++....++ +|.|..          +...|.+-|++.++
T Consensus        91 ~~~~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i-~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~  158 (187)
T d2cvba1          91 EEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLL-RYHGRVNDNPKDPSKVQSHDLEAAIEALLR  158 (187)
T ss_dssp             HHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBE-EEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             HHhCCcceeeechhhhhcccccccceeeEEEEcCCCeE-EEEeeecCCCCCCCCCCHHHHHHHHHHHHc
Confidence                       123468889999999999999643333 466643          23456666666554

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.93  E-value=1.9e-09  Score=79.76  Aligned_cols=72  Identities=21%  Similarity=0.431  Sum_probs=55.9

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc----------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~----------------------~~~~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.++..+ +....++.+..++.+..                      ....+.+.|+
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~-~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~  105 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHH-HhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcC
Confidence            467899999999999999999999999866 43334688888887651                      0124677899


Q ss_pred             CCccceEEEEe-cCee
Q psy14086        282 VDGFPSIYVYK-NGVR  296 (324)
Q Consensus       282 i~~~P~l~~~~-~g~~  296 (324)
                      +.++|+++++. +++.
T Consensus       106 v~~~Pt~~lID~~~G~  121 (144)
T d1o73a_         106 VESIPTLITINADTGA  121 (144)
T ss_dssp             CCSSSEEEEEETTTCC
T ss_pred             CCcCCEEEEEECCCCE
Confidence            99999999996 4333

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=7.8e-09  Score=74.02  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             eEcChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccc-cceEEEEe
Q psy14086         84 VELTEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKS-YPTLLWIE  161 (324)
Q Consensus        84 ~~l~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~-~P~~~~~~  161 (324)
                      -+++.+++.++++.+ |.++.|+.+. ..-..+...++++|+++++  ++.|+.+|.+.+..+++.||+.. .|.+++..
T Consensus         3 gei~~~~~~~y~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkg--ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3           3 GEIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             CBCCHHHHHHHHHTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             CccCHHHHHHHHhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcC--eeEEEEEchHHhHHHHHHcCCCccCCcEEEEe
Confidence            368899999999765 5556666654 4567899999999999999  89999999999999999999974 89998886


Q ss_pred             CC-eEeeee-------------cCCCCHHHHHHHHHhhhCCCC
Q psy14086        162 SG-KKLDKF-------------QGSRTLETLVNYVSKMKGPLN  190 (324)
Q Consensus       162 ~g-~~~~~~-------------~g~~~~~~i~~fi~~~~~~~~  190 (324)
                      .. .....+             .+.++.++|.+|+++++.|+.
T Consensus        80 ~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          80 MTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA  122 (125)
T ss_dssp             TTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC
T ss_pred             cccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCc
Confidence            52 222112             367899999999999999874

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.87  E-value=1.4e-08  Score=77.63  Aligned_cols=106  Identities=18%  Similarity=0.340  Sum_probs=71.9

Q ss_pred             CeeEecccccc-ccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc---------------
Q psy14086        210 PVVSLTSENFN-DVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS---------------  273 (324)
Q Consensus       210 ~v~~l~~~~~~-~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~---------------  273 (324)
                      .+..++++.+. +-..+++++|.||++||++|....+.++++..++...  ++.++.+..+....               
T Consensus        40 ~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~  117 (176)
T d1jfua_          40 AFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFLKEANLTRL  117 (176)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHHHHTTCCTT
T ss_pred             EEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc--ccccccccccccchhhhhhhHhhhCCcce
Confidence            45555555533 2235679999999999999999999999998665444  44555554432000               


Q ss_pred             -----------hhhhhhcCCCccceEEEE-ecCeeeeeecCC--CCHHHHHHHHHhhc
Q psy14086        274 -----------KDLCNQEGVDGFPSIYVY-KNGVRTAEYNGS--RDLEELYQFILKHK  317 (324)
Q Consensus       274 -----------~~~~~~~~i~~~P~l~~~-~~g~~~~~~~g~--~~~~~l~~fi~~~~  317 (324)
                                 ..+...+++.++|+.+++ ++|+.+..+.|.  .+.+++.++|+..+
T Consensus       118 ~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         118 GYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             CCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             eeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                       122234567789999888 467777778886  35588999888765

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.86  E-value=4.6e-09  Score=77.61  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=58.0

Q ss_pred             cCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc----------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE----------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~----------------------~~~~~~~~~~  281 (324)
                      .+++++|.||++||++|+...|.+.++..+ +.....+.++.++.+..                      ....+.+.|+
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~-~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~  103 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  103 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHH-HTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhh-cccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcC
Confidence            467899999999999999999999999966 44434677777776541                      1135778899


Q ss_pred             CCccceEEEEe-cCeeeeeec
Q psy14086        282 VDGFPSIYVYK-NGVRTAEYN  301 (324)
Q Consensus       282 i~~~P~l~~~~-~g~~~~~~~  301 (324)
                      +.++|+++++. +|+.+....
T Consensus       104 v~~~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_         104 VESIPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESC
T ss_pred             CCcCCEEEEEeCCCCEEEEEe
Confidence            99999999996 444443333

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.83  E-value=1.8e-08  Score=77.03  Aligned_cols=107  Identities=14%  Similarity=0.297  Sum_probs=72.2

Q ss_pred             CCCceEcChhhHHHH-hcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cc--------------
Q psy14086         80 NEGLVELTEESFEKY-VSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QH--------------  142 (324)
Q Consensus        80 ~~~~~~l~~~~f~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~--------------  142 (324)
                      ...+..++.+.+.-. ...+++++.||++||++|....+.++++...+... .+.++.+..+  ..              
T Consensus        38 df~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~  116 (176)
T d1jfua_          38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTR  116 (176)
T ss_dssp             CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCT
T ss_pred             CeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc-ccccccccccccchhhhhhhHhhhCCcc
Confidence            334444444433211 24567899999999999999999999999998763 4444444332  11              


Q ss_pred             ------------hhhhhhCCccccceEEEEeC-CeEeeeecCC--CCHHHHHHHHHhhhC
Q psy14086        143 ------------RSICQSFDIKSYPTLLWIES-GKKLDKFQGS--RTLETLVNYVSKMKG  187 (324)
Q Consensus       143 ------------~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~--~~~~~i~~fi~~~~~  187 (324)
                                  ..+...+++.++|+.++++. |....++.|.  .+.+++.++|+..++
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         117 LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             eeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhcC
Confidence                        12233456777899999976 6666678886  456889999988753

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=2.3e-08  Score=75.53  Aligned_cols=84  Identities=14%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             EcChhhHHHHh--cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCc---cccceEEE
Q psy14086         85 ELTEESFEKYV--SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDI---KSYPTLLW  159 (324)
Q Consensus        85 ~l~~~~f~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~P~~~~  159 (324)
                      .++++..+++.  .++..++.||++||++|++..|.+++++..++   ++.+..++.+.+.+....|..   ..+|.+++
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~  116 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC---CCcEEEEECccCHHHHHHHHHhccccccceee
Confidence            35555555444  34456899999999999999999999999976   488888988888888888844   46788887


Q ss_pred             EeC-CeEeeeecC
Q psy14086        160 IES-GKKLDKFQG  171 (324)
Q Consensus       160 ~~~-g~~~~~~~g  171 (324)
                      ++. +.....+.+
T Consensus       117 ~d~~~~~~~~~~~  129 (166)
T d1z6na1         117 LDEEFNLLGRFVE  129 (166)
T ss_dssp             ECTTCCEEEEEES
T ss_pred             cCccchhcccccc
Confidence            766 344444443

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.44  E-value=1.8e-07  Score=70.50  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=49.4

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcC---CCccceEEEEec
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEG---VDGFPSIYVYKN  293 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---i~~~P~l~~~~~  293 (324)
                      ++.+++.|+++||++|+...|.+++++.. +.   ++.+..++.+.  +++....|.   ...+|.+++...
T Consensus        54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~~~-~~---~~~~~~i~~d~--~~~~~~~~~~~~~~~~p~~~~~d~  119 (166)
T d1z6na1          54 RRYRLLVAGEMWCPDCQINLAALDFAQRL-QP---NIELAIISKGR--AEDDLRQRLALERIAIPLVLVLDE  119 (166)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHHHH-CT---TEEEEEECHHH--HHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             CCeEEEEEEeCcCccHHHHHHHHHHHHHH-CC---CCcEEEEECcc--CHHHHHHHHHhccccccceeecCc
Confidence            45689999999999999999999999854 33   57788888877  777777774   346788877743

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.24  E-value=2.7e-06  Score=61.27  Aligned_cols=104  Identities=11%  Similarity=0.148  Sum_probs=80.0

Q ss_pred             CCeeEeccccccccccC-CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC--cc
Q psy14086        209 EPVVSLTSENFNDVIKS-GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD--GF  285 (324)
Q Consensus       209 ~~v~~l~~~~~~~~~~~-~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~  285 (324)
                      +-|.+++.+++..+.+. .+.++.|+... .........+.++|++ ++.  ++.|+++|.+.  .....+.+|++  .+
T Consensus         6 PLv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~-~~~--ki~Fv~vd~~~--~~~~l~~~gl~~~~~   79 (133)
T d2djka1           6 PLIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEA-QRG--VINFGTIDAKA--FGAHAGNLNLKTDKF   79 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHS-STT--TSEEEEECTTT--TGGGTTTTTCCSSSS
T ss_pred             CceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHH-hcC--ceEEEEEeHHH--hHHHHHHhcCCcccC
Confidence            56899999999988865 46777777654 3557788999999965 555  79999999887  77778888984  68


Q ss_pred             ceEEEEe-cCeeeeee--cCCCCHHHHHHHHHhhcc
Q psy14086        286 PSIYVYK-NGVRTAEY--NGSRDLEELYQFILKHKV  318 (324)
Q Consensus       286 P~l~~~~-~g~~~~~~--~g~~~~~~l~~fi~~~~~  318 (324)
                      |.++++. .++....|  .+..+.+.|.+|+.+.+.
T Consensus        80 P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~  115 (133)
T d2djka1          80 PAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             SEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHc
Confidence            9999885 33433344  356899999999999765

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.20  E-value=4.8e-06  Score=57.99  Aligned_cols=93  Identities=23%  Similarity=0.327  Sum_probs=71.9

Q ss_pred             cEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeee-eeecCCC
Q psy14086        227 TVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRT-AEYNGSR  304 (324)
Q Consensus       227 ~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~-~~~~g~~  304 (324)
                      ..++.|.+ ..|..|..+...+++++ . ...  ++.+...+.+..++++++++++++..|++++..+|+.. .+|.|--
T Consensus        24 V~l~~~~~~~~~~~~~e~~~ll~ela-~-lSd--ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP   99 (119)
T d1a8la1          24 VKLIVFVRKDHCQYCDQLKQLVQELS-E-LTD--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (119)
T ss_dssp             EEEEEEECSSSCTTHHHHHHHHHHHH-T-TCT--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             EEEEEEecCCCchhHHHHHHHHHHHH-h-hCC--CeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEecc
Confidence            34555554 46999999999999998 4 333  68888777776556788999999999999999887653 4788876


Q ss_pred             CHHHHHHHHHhhcccCCCC
Q psy14086        305 DLEELYQFILKHKVESHDE  323 (324)
Q Consensus       305 ~~~~l~~fi~~~~~~~~~e  323 (324)
                      .-.++..||...+..+.+|
T Consensus       100 ~GhEf~SlilaIl~vs~ge  118 (119)
T d1a8la1         100 AGHEFAAFLEDIVDVSREE  118 (119)
T ss_dssp             CTTHHHHHHHHHHHHHHTC
T ss_pred             CchhHHHHHHHHHHhccCC
Confidence            7788999998887765544

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.8e-06  Score=55.99  Aligned_cols=93  Identities=13%  Similarity=0.250  Sum_probs=69.5

Q ss_pred             ChhhHHHHhcCC-CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCC-e
Q psy14086         87 TEESFEKYVSLG-NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESG-K  164 (324)
Q Consensus        87 ~~~~f~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-~  164 (324)
                      +.+..++++... .++|.|+......   ....|.++|+.+++   +.|+.+   .+..+++.+|+.. |+|++|++. +
T Consensus         7 ~~~~~e~f~~~~~v~VVGfF~~~~~~---~~~~F~~~A~~~~d---~~F~~t---~~~~v~~~~~v~~-~~Ivl~k~~de   76 (110)
T d1bjxa_           7 DGAAAESLVESSEVAVIGFFKDVESD---SAKQFLQAAEAIDD---IPFGIT---SNSDVFSKYQLDK-DGVVLFKKFDE   76 (110)
T ss_dssp             SHHHHHHHHHHSSEEEEEECTTTTSH---HHHHHHHHHHHCSS---SCEEEE---CCSHHHHHTTCSS-CEEEEEESSSS
T ss_pred             CHHHHHHHhccCCeEEEEEEcCCCch---HHHHHHHHHHhCcC---ceEEEE---CCHHHHHHcCCCC-CeEEEeccCCc
Confidence            456677777555 4578888654333   56789999999864   778764   3456889999965 999999984 4


Q ss_pred             EeeeecCCCCHHHHHHHHHhhhCCC
Q psy14086        165 KLDKFQGSRTLETLVNYVSKMKGPL  189 (324)
Q Consensus       165 ~~~~~~g~~~~~~i~~fi~~~~~~~  189 (324)
                      ....|.|..+.++|.+||....-+.
T Consensus        77 ~~~~~~~~~~~~~l~~fi~~~~~Pl  101 (110)
T d1bjxa_          77 GRNNFEGEVTKENLLDFIKHNQLPL  101 (110)
T ss_dssp             SBCCCCSCCCHHHHHHHHHHHSSCC
T ss_pred             cccccCCCCCHHHHHHHHHHcCcCc
Confidence            4445778899999999999987743

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.07  E-value=1.5e-05  Score=53.80  Aligned_cols=90  Identities=12%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             hhhHHHHhc--CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeC-Ce
Q psy14086         88 EESFEKYVS--LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIES-GK  164 (324)
Q Consensus        88 ~~~f~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-g~  164 (324)
                      .+..+.++.  +...+|.|+.....+   ....|.++|..++.  .+.|+.   +.++.+++++|+. .|++++|++ .+
T Consensus         7 ~~e~~~F~~~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd--~~~F~~---t~d~~va~~~~v~-~~~vvlfr~fde   77 (102)
T d1a8ya2           7 ERELQAFENIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHP--YIPFFA---TFDSKVAKKLTLK-LNEIDFYEAFME   77 (102)
T ss_dssp             HHHHHHHTTCCSSCEEEEECSSTTCH---HHHHHHHHHHHHTT--TSCEEE---ECCHHHHHHHCCC-TTCEEEECTTCS
T ss_pred             HHHHHHHhccCCCEEEEEEECCCCcH---HHHHHHHHHHHcCC--CceEEE---ECCHHHHHHcCCC-CCCEEEeeecCC
Confidence            456777774  345788888754333   56799999999987  789995   4578899999995 799999988 55


Q ss_pred             EeeeecCC-CCHHHHHHHHHhhh
Q psy14086        165 KLDKFQGS-RTLETLVNYVSKMK  186 (324)
Q Consensus       165 ~~~~~~g~-~~~~~i~~fi~~~~  186 (324)
                      ....|.|. .+.++|..||....
T Consensus        78 ~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          78 EPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             SEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CceecCCCCCCHHHHHHHHHHhc
Confidence            55668885 89999999998753

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=2e-05  Score=58.22  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=56.6

Q ss_pred             HHHHhcCCCEEEEE-e-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhh
Q psy14086         91 FEKYVSLGNHFVKF-Y-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQ  147 (324)
Q Consensus        91 f~~~~~~~~~~v~f-~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~  147 (324)
                      +.++..++.++|.| | +.||+.|....+.|++.+.+|+.  ...++.+..+                     .+..+++
T Consensus        26 l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~  103 (156)
T d2a4va1          26 LKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIG  103 (156)
T ss_dssp             HHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHH
T ss_pred             eHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccchhhhHHhhhcccCccceeccchHHHHHH
Confidence            45555566666555 4 78999999999999999999976  4555555443                     2246777


Q ss_pred             hCCccccc------eEEEEeCCeEeeeecCCC
Q psy14086        148 SFDIKSYP------TLLWIESGKKLDKFQGSR  173 (324)
Q Consensus       148 ~~~i~~~P------~~~~~~~g~~~~~~~g~~  173 (324)
                      .||+...|      +.++..+|+...++.+..
T Consensus       104 ~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~  135 (156)
T d2a4va1         104 LLGAKKTPLSGSIRSHFIFVDGKLKFKRVKIS  135 (156)
T ss_dssp             HHTCBSSSSSCBCCEEEEEETTEEEEEEESCC
T ss_pred             HcCCCccccCCeeEEEEEEECCeEEEEEEEeC
Confidence            78876555      455667888777777654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.4e-05  Score=59.13  Aligned_cols=84  Identities=24%  Similarity=0.369  Sum_probs=61.3

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------------------  270 (324)
                      +.+++.|+.+.|++|+.+.|.+.++...      ++.+......-                                   
T Consensus        27 k~tIv~FsD~~CpyC~~~~~~l~~~~~~------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          27 KHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhhcc------CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            4589999999999999999999988632      23333333211                                   


Q ss_pred             -------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        271 -------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       271 -------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                             ..+..+...+||+++|+++ +.+|+.   +.|..+.+.|.++|++....
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~---v~G~~~~e~l~~~i~~~~k~  152 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVV-LSNGTL---VPGYQPPKEMKEFLDEHQKM  152 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCE---EESCCCHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEE-EeCCeE---ecCCCCHHHHHHHHHHHHHH
Confidence                   1124667889999999974 466753   47999999999999987553

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.93  E-value=3.6e-05  Score=57.00  Aligned_cols=96  Identities=10%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             HHHHhc-CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------cchhhhh
Q psy14086         91 FEKYVS-LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------QHRSICQ  147 (324)
Q Consensus        91 f~~~~~-~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------~~~~~~~  147 (324)
                      +.++.. .+++++.|| +.||++|....+.+.+++..+... .+.++.+..+                     .+..+++
T Consensus        23 Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  101 (160)
T d2cx4a1          23 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  101 (160)
T ss_dssp             HHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT-CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHH
T ss_pred             hHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc-ccccccccccchhhhhhhcccceeeEEEeecCCcchHH
Confidence            344443 457788888 899999999999999999988764 4555554432                     2256777


Q ss_pred             hCCcc----------ccceEEEEeC-CeEeeeec-----CCCCHHHHHHHHHhhhC
Q psy14086        148 SFDIK----------SYPTLLWIES-GKKLDKFQ-----GSRTLETLVNYVSKMKG  187 (324)
Q Consensus       148 ~~~i~----------~~P~~~~~~~-g~~~~~~~-----g~~~~~~i~~fi~~~~~  187 (324)
                      .||+.          ..|++++++. |.....+.     +..+.+++.+-+++.++
T Consensus       102 ~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         102 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             HcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence            88873          3688888866 65544443     23467888888887766

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=1.3e-05  Score=56.71  Aligned_cols=99  Identities=11%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             EeccccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCC-ccceEEE
Q psy14086        213 SLTSENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVD-GFPSIYV  290 (324)
Q Consensus       213 ~l~~~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~-~~P~l~~  290 (324)
                      +++.+++...++.+ +.++.|+.+. ..-..+...+.++|++ +++  ++.|+.+|.+.  .....+.+|++ ..|.+++
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~-fkg--ki~Fv~~D~~~--~~~~l~~fgl~e~~P~~~i   77 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKK-NRG--LMNFVSIDARK--FGRHAGNLNMKEQFPLFAI   77 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSH-HHHHHHHHHHHHHHHH-TTT--TCEEEEEEHHH--HTTHHHHTTCCSCSSEEEE
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHH-hcC--eeEEEEEchHH--hHHHHHHcCCCccCCcEEE
Confidence            46677888888654 7888888753 3445788999999966 555  79999999887  77788899986 5899988


Q ss_pred             Eec--Ceeeeee-------------cCCCCHHHHHHHHHhhcc
Q psy14086        291 YKN--GVRTAEY-------------NGSRDLEELYQFILKHKV  318 (324)
Q Consensus       291 ~~~--g~~~~~~-------------~g~~~~~~l~~fi~~~~~  318 (324)
                      ...  +.++ .+             .+..+.+.|.+|+.+.+.
T Consensus        78 ~~~~~~~ky-~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          78 HDMTEDLKY-GLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             EETTTTEEE-ECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             EecccCccc-ccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            753  3333 22             366899999999999865

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.92  E-value=2.7e-05  Score=57.65  Aligned_cols=97  Identities=13%  Similarity=0.253  Sum_probs=63.1

Q ss_pred             ccc-cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------ccchhhhhh
Q psy14086        221 DVI-KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------ELSKDLCNQ  279 (324)
Q Consensus       221 ~~~-~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------~~~~~~~~~  279 (324)
                      ++. .+++++|.|| +.||+.|....+.+.++..++...  .+.++.+..+.                   +.+..+.+.
T Consensus        25 d~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  102 (160)
T d2cx4a1          25 EVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA--NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKL  102 (160)
T ss_dssp             HHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT--CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHH
T ss_pred             HHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc--ccccccccccchhhhhhhcccceeeEEEeecCCcchHHH
Confidence            444 3467888888 889999999999999887554333  46666666543                   123456677


Q ss_pred             cCCC----------ccceEEEE-ecCeeeeeecC-----CCCHHHHHHHHHhhccc
Q psy14086        280 EGVD----------GFPSIYVY-KNGVRTAEYNG-----SRDLEELYQFILKHKVE  319 (324)
Q Consensus       280 ~~i~----------~~P~l~~~-~~g~~~~~~~g-----~~~~~~l~~fi~~~~~~  319 (324)
                      |++.          ..|+.+++ ++|+....+.+     ..+.+++.+-+++..++
T Consensus       103 ~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         103 YNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             TTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             cCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence            7763          35777777 56766544332     23567777777766553

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.90  E-value=3.7e-05  Score=53.34  Aligned_cols=87  Identities=16%  Similarity=0.344  Sum_probs=67.3

Q ss_pred             CCE-EEEEeC-CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--cchhhhhhCCccccceEEEEeCCeEe-eeecCC
Q psy14086         98 GNH-FVKFYA-PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--QHRSICQSFDIKSYPTLLWIESGKKL-DKFQGS  172 (324)
Q Consensus        98 ~~~-~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~g~~~-~~~~g~  172 (324)
                      +++ ++.|.. ..|..|..+...+++++..- .  ++.+...+.+  +.+.++++|+|...|++.+.++|+.. .+|.|-
T Consensus        22 ~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-d--ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~Gi   98 (119)
T d1a8la1          22 NPVKLIVFVRKDHCQYCDQLKQLVQELSELT-D--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGL   98 (119)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-T--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESC
T ss_pred             CCEEEEEEecCCCchhHHHHHHHHHHHHhhC-C--CeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEec
Confidence            455 555554 56999999999999998763 2  5777665544  56789999999999999999887653 579998


Q ss_pred             CCHHHHHHHHHhhhC
Q psy14086        173 RTLETLVNYVSKMKG  187 (324)
Q Consensus       173 ~~~~~i~~fi~~~~~  187 (324)
                      ..-.++..||...+.
T Consensus        99 P~GhEf~SlilaIl~  113 (119)
T d1a8la1          99 PAGHEFAAFLEDIVD  113 (119)
T ss_dssp             CCTTHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHH
Confidence            888888888887653

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=5.8e-05  Score=55.57  Aligned_cols=92  Identities=9%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             CeeEecccc--ccccccCCc-EEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------
Q psy14086        210 PVVSLTSEN--FNDVIKSGT-VFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------  270 (324)
Q Consensus       210 ~v~~l~~~~--~~~~~~~~~-~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------  270 (324)
                      .+...+++.  +.++...++ ++++|| +.||+.|....+.+.+...+ +..  .+.+..++.+.               
T Consensus        15 ~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~-~~~--~~~~~~is~d~~~~~~~f~~~~~l~f   91 (156)
T d2a4va1          15 SLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQE-LKE--YAAVFGLSADSVTSQKKFQSKQNLPY   91 (156)
T ss_dssp             EEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHH-HTT--TCEEEEEESCCHHHHHHHHHHHTCSS
T ss_pred             EEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHH-Hhh--ccceeeeccchhhhHHhhhcccCccc
Confidence            344444444  334444445 555556 78999999999999998866 444  34455666554               


Q ss_pred             ----ccchhhhhhcCCCccc------eEEEEecCeeeeeecCCC
Q psy14086        271 ----ELSKDLCNQEGVDGFP------SIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       271 ----~~~~~~~~~~~i~~~P------~l~~~~~g~~~~~~~g~~  304 (324)
                          +.+.++.++||+...|      +.++..+|+....+.|..
T Consensus        92 ~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~  135 (156)
T d2a4va1          92 HLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKIS  135 (156)
T ss_dssp             EEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCC
T ss_pred             eeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEEeC
Confidence                1234677788876555      455557898877766653

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=5.2e-05  Score=56.70  Aligned_cols=89  Identities=15%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------ccchhhhhhc
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------ELSKDLCNQE  280 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------~~~~~~~~~~  280 (324)
                      ++.++|.|| +.||+.|....+.+.++..++...  ++.+..++.+.                       +.+..+++.|
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~--g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCeEEEEEecCCCCcccccccccccccccccccc--CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHc
Confidence            467888888 899999999999999998775554  56677776654                       1234677788


Q ss_pred             CC-----CccceEEEEe-cCeeeeee--cC--CCCHHHHHHHHHh
Q psy14086        281 GV-----DGFPSIYVYK-NGVRTAEY--NG--SRDLEELYQFILK  315 (324)
Q Consensus       281 ~i-----~~~P~l~~~~-~g~~~~~~--~g--~~~~~~l~~fi~~  315 (324)
                      |+     ...|+.+++. +|.....+  ..  .++.+++.+.|+.
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            87     5678887875 67654332  22  2567888887764

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=4.9e-05  Score=56.80  Aligned_cols=79  Identities=13%  Similarity=0.237  Sum_probs=60.6

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------------------
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------------------  140 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------------------  140 (324)
                      .++.|+.+.|++|+++.+.++++....    ++.+..++..                                       
T Consensus        39 tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          39 IVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  114 (169)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence            488999999999999999999987654    4555544431                                       


Q ss_pred             -----------cchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086        141 -----------QHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       141 -----------~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                                 .+..+++.+||+++|++++.+.+.......|..+.+.|.+-+
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence                       014577789999999999888765666789998988877654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.84  E-value=8.4e-05  Score=55.95  Aligned_cols=89  Identities=13%  Similarity=0.304  Sum_probs=67.5

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc----------------------------------
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH----------------------------------  142 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~----------------------------------  142 (324)
                      .++.+|.|+...|++|+.+.+.+..+.+++.....+....+.....                                  
T Consensus        18 ~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (181)
T d1beda_          18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR   97 (181)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc
Confidence            3457899999999999999999999999987743444444432111                                  


Q ss_pred             ---------------------------------------hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHH
Q psy14086        143 ---------------------------------------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       143 ---------------------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                                                             ...++++||+++|++++  +|+......+..+.+.+.+-|+
T Consensus        98 ~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i~  175 (181)
T d1beda_          98 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLVN  175 (181)
T ss_dssp             CCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHHH
Confidence                                                   45667889999999987  7876666777888898888887


Q ss_pred             hhhC
Q psy14086        184 KMKG  187 (324)
Q Consensus       184 ~~~~  187 (324)
                      .+++
T Consensus       176 ~L~~  179 (181)
T d1beda_         176 YLLT  179 (181)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=4.1e-05  Score=56.45  Aligned_cols=82  Identities=12%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             CEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec----------------------------------------
Q psy14086         99 NHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKID----------------------------------------  138 (324)
Q Consensus        99 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd----------------------------------------  138 (324)
                      .+++.|+.+.|++|+++.+.++++.....   ++.+...=                                        
T Consensus        28 ~tIv~FsD~~CpyC~~~~~~l~~~~~~~~---~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (156)
T d1eeja1          28 HVITVFTDITCGYCHKLHEQMADYNALGI---TVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD  104 (156)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHHTTE---EEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHhhccCc---eEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhc
Confidence            36889999999999999999998865321   22222110                                        


Q ss_pred             --cccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        139 --CTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       139 --~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                        ...+..+++.+||+++|+++ +.+|+   .+.|..+.+.|.++|++...
T Consensus       105 ~~i~~~~~la~~lgv~GTPt~~-~~nG~---~v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1         105 VDIADHYALGVQLGVSGTPAVV-LSNGT---LVPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CCHHHHHHHHHHHTCCSSSEEE-CTTSC---EEESCCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCcCCCEEE-EeCCe---EecCCCCHHHHHHHHHHHHH
Confidence              11235788899999999865 45564   35799999999999998653

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.80  E-value=4.6e-05  Score=57.03  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc-------------------------------------
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH-------------------------------------  142 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~-------------------------------------  142 (324)
                      .++.|+...|++|+.+.+.+..+..++.....+.+........                                     
T Consensus        27 ~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (172)
T d1z6ma1          27 KMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWG  106 (172)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHHHT
T ss_pred             EEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccccc
Confidence            4899999999999999999999998886544565554333211                                     


Q ss_pred             -----------------------------hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        143 -----------------------------RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       143 -----------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                                                   ...++++||+++|++++  +|+.   +.|..+.++|.++|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         107 NLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK  172 (172)
T ss_dssp             TSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHcC
Confidence                                         23455689999999887  6643   6899999999999853

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=3e-05  Score=56.77  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             EEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecc----------------------------------------
Q psy14086        100 HFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDC----------------------------------------  139 (324)
Q Consensus       100 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~----------------------------------------  139 (324)
                      .++.|+.+.|++|+++.+.+..+.....   .+.+.....                                        
T Consensus        29 ~I~~FsD~~CPyC~~~~~~l~~l~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~  105 (150)
T d1t3ba1          29 VVTVFMDITCHYCHLLHQQLKEYNDLGI---TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPN  105 (150)
T ss_dssp             EEEEEECTTCHHHHHHHTTHHHHHHTTE---EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSS
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHhccCc---eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhh
Confidence            5888999999999999999999986532   244332211                                        


Q ss_pred             --ccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHHHh
Q psy14086        140 --TQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYVSK  184 (324)
Q Consensus       140 --~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi~~  184 (324)
                        ..+..+++.+||+++|++++ .+|+   ...|..+.++|.+.|++
T Consensus       106 ~i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         106 IVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             HHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHh
Confidence              12357888999999998775 4564   36899999999999976

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=4.9e-05  Score=56.81  Aligned_cols=88  Identities=11%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------cchhhhhhCC
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------QHRSICQSFD  150 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------~~~~~~~~~~  150 (324)
                      .+++++.|| +.||+.|....+.|.+++.+++.. ++.++.+..+                         .+..+++.||
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~-g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCeEEEEEecCCCCcccccccccccccccccccc-CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            345577777 899999999999999999999763 3555555443                         2256778888


Q ss_pred             c-----cccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086        151 I-----KSYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       151 i-----~~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                      +     ...|+.++++. |.....+.+    ....+++.+.|+.+
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8     56788888876 554332222    25778888887754

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.78  E-value=9.8e-05  Score=49.68  Aligned_cols=89  Identities=11%  Similarity=0.156  Sum_probs=65.9

Q ss_pred             cccccccc--CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEec-
Q psy14086        217 ENFNDVIK--SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKN-  293 (324)
Q Consensus       217 ~~~~~~~~--~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~-  293 (324)
                      +.++.++.  ++.++|-|+...-+   .....+.++|.. ++.  .+.|+.+.     +.+++++++++ .|++++|+. 
T Consensus         8 ~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~-~rd--~~~F~~t~-----d~~va~~~~v~-~~~vvlfr~f   75 (102)
T d1a8ya2           8 RELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEE-FHP--YIPFFATF-----DSKVAKKLTLK-LNEIDFYEAF   75 (102)
T ss_dssp             HHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHH-HTT--TSCEEEEC-----CHHHHHHHCCC-TTCEEEECTT
T ss_pred             HHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHH-cCC--CceEEEEC-----CHHHHHHcCCC-CCCEEEeeec
Confidence            33777775  34688888864322   356778888855 444  58888866     78999999995 899999975 


Q ss_pred             CeeeeeecCC-CCHHHHHHHHHhhc
Q psy14086        294 GVRTAEYNGS-RDLEELYQFILKHK  317 (324)
Q Consensus       294 g~~~~~~~g~-~~~~~l~~fi~~~~  317 (324)
                      .+....|.|. .+.++|.+||.++-
T Consensus        76 de~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          76 MEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             CSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CCCceecCCCCCCHHHHHHHHHHhc
Confidence            3445678885 89999999999873

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.72  E-value=6.4e-05  Score=54.93  Aligned_cols=82  Identities=21%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-----------------------------------
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-----------------------------------  270 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-----------------------------------  270 (324)
                      +.+++.|+.+.|++|+.+.+.+..+...    ...+.+.......                                   
T Consensus        27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~  102 (150)
T d1t3ba1          27 KHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  102 (150)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHhcc----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchh
Confidence            3578999999999999999999988732    1123333322211                                   


Q ss_pred             -----ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        271 -----ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       271 -----~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                           ..+.++.+.+||+++|++++ .+|+   ...|....+.|.++|++
T Consensus       103 ~~~~i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         103 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHh
Confidence                 01236678899999999864 5664   35899999999999875

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.71  E-value=0.00013  Score=45.98  Aligned_cols=71  Identities=21%  Similarity=0.358  Sum_probs=55.8

Q ss_pred             EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCC-CCHHHHHHH
Q psy14086        103 KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGS-RTLETLVNY  181 (324)
Q Consensus       103 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~-~~~~~i~~f  181 (324)
                      ..+.+.|..|.++....++++.++.-  ...+..+  +....+. +|||-+.|++++  +|+..  +.|. .+.++|.+|
T Consensus         5 kVlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~vv--~~G~vPs~~ei~~~   75 (77)
T d1iloa_           5 QIYGTGCANCQMLEKNAREAVKELGI--DAEFEKI--KEMDQIL-EAGLTALPGLAV--DGELK--IMGRVASKEEIKKI   75 (77)
T ss_dssp             EEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTEEE--ECSSCCCHHHHHHH
T ss_pred             EEeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCEEE--EEecCCCHHHHHHH
Confidence            34589999999999999999998754  5666655  4556676 599999999987  56554  6786 599999998


Q ss_pred             H
Q psy14086        182 V  182 (324)
Q Consensus       182 i  182 (324)
                      |
T Consensus        76 L   76 (77)
T d1iloa_          76 L   76 (77)
T ss_dssp             C
T ss_pred             h
Confidence            6

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.69  E-value=0.00014  Score=54.12  Aligned_cols=90  Identities=16%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDL  276 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~  276 (324)
                      .+++++|.|| +.||+.|....+.+.++..++...  ++.++.++.+..                          ....+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~--~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  109 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI--NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAI  109 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC--ceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHH
Confidence            4678999998 999999999999999998776554  566666665530                          12345


Q ss_pred             hhhcCCC------ccceEEEEe-cCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        277 CNQEGVD------GFPSIYVYK-NGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~~-~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      .+.|++.      .+|+.+++. +|.....+.+    .++.+++++.|+.
T Consensus       110 ~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         110 ARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            6667762      356776764 6766444322    2467888887764

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.69  E-value=8e-05  Score=47.03  Aligned_cols=72  Identities=10%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      +.+|..++|..|......+.+   . .   .+.+..+|++.++.+.++||.+ +|.+. ..++...   .-.++.+.+.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~-~---~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~~~~~~l---~w~fd~~~l~~   69 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A-R---AGAFFSVFIDDDAALESAYGLR-VPVLR-DPMGREL---DWPFDAPRLRA   69 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T-T---CCCEEEEECTTCHHHHHHHTTT-CSEEE-CTTCCEE---ESCCCHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---c-c---CCcEEEEEccCCHHHHHHhCCe-eeEEE-ECCeeEE---cCccCHHHHHH
Confidence            578999999999877654432   2 2   3678899999999999999976 89654 3333322   23579999999


Q ss_pred             HHHh
Q psy14086        181 YVSK  184 (324)
Q Consensus       181 fi~~  184 (324)
                      |+..
T Consensus        70 ~L~~   73 (75)
T d1ttza_          70 WLDA   73 (75)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00013  Score=54.41  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC------------------------------------
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ------------------------------------  270 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~------------------------------------  270 (324)
                      ..++.|+.+.|++|+.+.+.++++...   .  ++.+..++...                                    
T Consensus        38 ~tv~vF~D~~CP~C~~~~~~l~~l~~~---~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~  112 (169)
T d1v58a1          38 VIVYVFADPFCPYCKQFWQQARPWVDS---G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  112 (169)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHT---T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHhc---c--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccc
Confidence            478999999999999999999887632   2  46666665432                                    


Q ss_pred             ------------ccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHH
Q psy14086        271 ------------ELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFI  313 (324)
Q Consensus       271 ------------~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi  313 (324)
                                  ..+..+.+.+||++.|++++...+.......|..+.+.|.+.|
T Consensus       113 ~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         113 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence                        0112566788999999998876555556788988887776644

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00017  Score=49.55  Aligned_cols=90  Identities=17%  Similarity=0.282  Sum_probs=65.1

Q ss_pred             ccccccccCC-cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecC-
Q psy14086        217 ENFNDVIKSG-TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNG-  294 (324)
Q Consensus       217 ~~~~~~~~~~-~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g-  294 (324)
                      +.+++++... .++|-|+..--   ......+.++|+. ++   ++.|+.+.     +.++.+.++++. |+|++|+.. 
T Consensus         9 ~~~e~f~~~~~v~VVGfF~~~~---~~~~~~F~~~A~~-~~---d~~F~~t~-----~~~v~~~~~v~~-~~Ivl~k~~d   75 (110)
T d1bjxa_           9 AAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEA-ID---DIPFGITS-----NSDVFSKYQLDK-DGVVLFKKFD   75 (110)
T ss_dssp             HHHHHHHHHSSEEEEEECTTTT---SHHHHHHHHHHHH-CS---SSCEEEEC-----CSHHHHHTTCSS-CEEEEEESSS
T ss_pred             HHHHHHhccCCeEEEEEEcCCC---chHHHHHHHHHHh-Cc---CceEEEEC-----CHHHHHHcCCCC-CeEEEeccCC
Confidence            4477777654 57777775422   2366778899955 43   47788765     577889999964 999999864 


Q ss_pred             eeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        295 VRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       295 ~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      +....|.|..+.+.|.+||..+.-+
T Consensus        76 e~~~~~~~~~~~~~l~~fi~~~~~P  100 (110)
T d1bjxa_          76 EGRNNFEGEVTKENLLDFIKHNQLP  100 (110)
T ss_dssp             SSBCCCCSCCCHHHHHHHHHHHSSC
T ss_pred             ccccccCCCCCHHHHHHHHHHcCcC
Confidence            3445678889999999999987543

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.59  E-value=0.00011  Score=54.78  Aligned_cols=89  Identities=16%  Similarity=0.332  Sum_probs=61.1

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      ..+++++.|| +.||+.|....+.|+++..+++.. .+.++.+..+.                            +..++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  110 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIA  110 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHH
Confidence            3556788888 999999999999999999999863 45555554432                            13466


Q ss_pred             hhCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086        147 QSFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       147 ~~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                      +.|++.      ..|+.++++. |.....+.+    ..+.+++.+.|+.+
T Consensus       111 ~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         111 RAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence            667762      3678888876 654433332    34677887777543

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.57  E-value=0.00023  Score=52.84  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             cCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086        224 KSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~  279 (324)
                      .++.++|.||.. ||+.|....+.+.++..++...  ++.+..++.+..                       ....++++
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~--g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~  107 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQ  107 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHH
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc--ceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHH
Confidence            356789999966 9999999999999999776555  566777776641                       12356677


Q ss_pred             cCCC------ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHh
Q psy14086        280 EGVD------GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILK  315 (324)
Q Consensus       280 ~~i~------~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~  315 (324)
                      ||+.      ..|+.+++ ++|.....+.+.    ++.+++.+-|+.
T Consensus       108 ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1         108 FDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             hCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence            7763      35666666 467654333322    466777776654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0002  Score=53.94  Aligned_cols=44  Identities=11%  Similarity=0.092  Sum_probs=35.9

Q ss_pred             cCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc
Q psy14086         96 SLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT  140 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~  140 (324)
                      ..+.++|.++|+||++|.+..+.|+++.++|+++ .+.++.+-|+
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~-g~~Il~fP~n   66 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   66 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhccc-ceeEEEeecc
Confidence            4567789999999999999999999999999763 4666666444

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=0.00018  Score=45.21  Aligned_cols=72  Identities=19%  Similarity=0.397  Sum_probs=53.4

Q ss_pred             EEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCC-CHHH
Q psy14086        230 IKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSR-DLEE  308 (324)
Q Consensus       230 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~-~~~~  308 (324)
                      |...++.|..|.++....++++.+ ..-  ...+.++  ++  .+++. +|||-+.|++++  +|+.+  +.|.. +.++
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e-~gi--~a~v~kv--~d--~~ei~-~ygVmstPalvI--dg~vv--~~G~vPs~~e   71 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKE-LGI--DAEFEKI--KE--MDQIL-EAGLTALPGLAV--DGELK--IMGRVASKEE   71 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHH-TTC--CEEEEEE--CS--HHHHH-HHTCSSSSCEEE--TTEEE--ECSSCCCHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHH-cCC--ceEEEEe--CC--HHHHH-HcCCcCCCEEEE--CCEEE--EEecCCCHHH
Confidence            334589999999999999998855 433  4555444  44  56775 599999999966  66554  67864 8999


Q ss_pred             HHHHH
Q psy14086        309 LYQFI  313 (324)
Q Consensus       309 l~~fi  313 (324)
                      +.+||
T Consensus        72 i~~~L   76 (77)
T d1iloa_          72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            99986

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.50  E-value=0.00028  Score=52.52  Aligned_cols=83  Identities=20%  Similarity=0.224  Sum_probs=59.1

Q ss_pred             cEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCcc----------------------------------
Q psy14086        227 TVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQEL----------------------------------  272 (324)
Q Consensus       227 ~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~----------------------------------  272 (324)
                      ..++.|....|++|+.+.+.+..+..++- ....+.+.........                                  
T Consensus        26 v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (172)
T d1z6ma1          26 VKMIEFINVRCPYCRKWFEESEELLAQSV-KSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE  104 (172)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHH-HTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhhhhhhhc-cccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccc
Confidence            47999999999999999999998875543 3334555554433200                                  


Q ss_pred             ------------------------------chhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHHHHHh
Q psy14086        273 ------------------------------SKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQFILK  315 (324)
Q Consensus       273 ------------------------------~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~fi~~  315 (324)
                                                    .....+++||+++||+++  +|+.   +.|..+.+++.++|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         105 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK  172 (172)
T ss_dssp             HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHcC
Confidence                                          012334589999999866  7753   5799999999999863

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.48  E-value=0.00057  Score=53.47  Aligned_cols=89  Identities=9%  Similarity=0.149  Sum_probs=63.0

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC-------------------------ccchhhhh
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ-------------------------ELSKDLCN  278 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~-------------------------~~~~~~~~  278 (324)
                      ++.++++|| +.||+.|....+.+.++..++...  ++.++-++++.                         +....+++
T Consensus        29 Gk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~--g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          29 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             CCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC--CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            456888888 899999999999999888675554  56666666554                         12346778


Q ss_pred             hcCC-------CccceEEEE-ecCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        279 QEGV-------DGFPSIYVY-KNGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       279 ~~~i-------~~~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      .||+       ...|+++++ ++|.....+.+    .++.+++++.|+.
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            8887       357888888 56765332221    2689999998875

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00025  Score=46.09  Aligned_cols=75  Identities=13%  Similarity=0.208  Sum_probs=54.4

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhC--CccccceEEEEeCCeEeeeecCCCC
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSF--DIKSYPTLLWIESGKKLDKFQGSRT  174 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~--~i~~~P~~~~~~~g~~~~~~~g~~~  174 (324)
                      +|.|..++|++|......|.++...+.+   +.+..+|.+.++    .+.+..  +++++|.+++  +|+    +.|.. 
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~----~IGG~-   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD---FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ----HIGGY-   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS---CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE----EEESS-
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC---ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE----EEECH-
Confidence            6789999999999999999999998875   888888766443    233332  4567998765  554    44554 


Q ss_pred             HHHHHHHHHhhh
Q psy14086        175 LETLVNYVSKMK  186 (324)
Q Consensus       175 ~~~i~~fi~~~~  186 (324)
                       +++.+++++.+
T Consensus        73 -~el~~~~~~~~   83 (85)
T d1egoa_          73 -TDFAAWVKENL   83 (85)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -HHHHHHHHhcC
Confidence             57888877654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.44  E-value=0.0006  Score=50.67  Aligned_cols=95  Identities=13%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             cccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------c
Q psy14086        220 NDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------L  272 (324)
Q Consensus       220 ~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~  272 (324)
                      .+...++++++.|| +.||+.|....+.+++...++...  ++.+..++.+..                          .
T Consensus        28 sd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~  105 (170)
T d1zofa1          28 SKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADI  105 (170)
T ss_dssp             TTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECT
T ss_pred             HHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC--CeeEecccccchhhHHHHHhhhhhcccccCccccccccc
Confidence            34443457889999 899999999999999888665444  566666666541                          1


Q ss_pred             chhhhhhcCCC-----ccceEEEE-ecCeeeeeec--C--CCCHHHHHHHHHhh
Q psy14086        273 SKDLCNQEGVD-----GFPSIYVY-KNGVRTAEYN--G--SRDLEELYQFILKH  316 (324)
Q Consensus       273 ~~~~~~~~~i~-----~~P~l~~~-~~g~~~~~~~--g--~~~~~~l~~fi~~~  316 (324)
                      ...+.+.||+.     ..|+.++. ++|+......  .  .++.+++++.|+..
T Consensus       106 ~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         106 TKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             TSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            23566777773     45667666 5676543221  1  24677888877654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.43  E-value=0.00043  Score=51.82  Aligned_cols=88  Identities=22%  Similarity=0.416  Sum_probs=61.9

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC--Cc-------------------------------
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT--QE-------------------------------  271 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~--~~-------------------------------  271 (324)
                      .++.+|.|.+..|++|+.+.+.+..+..+ +..  .+.+......  ..                               
T Consensus        18 ~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (181)
T d1beda_          18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQ-LPE--GAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIH   94 (181)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHT-SCT--TCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCccchhhhhhhhhHhhh-ccc--ccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            45688899999999999999999998855 443  3444443322  10                               


Q ss_pred             ----------------------------------------cchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHHH
Q psy14086        272 ----------------------------------------LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELYQ  311 (324)
Q Consensus       272 ----------------------------------------~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~~  311 (324)
                                                              .+....+.+||+++||+++  +|+......|..+.+.|.+
T Consensus        95 ~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~  172 (181)
T d1beda_          95 TLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFD  172 (181)
T ss_dssp             TSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHH
T ss_pred             HhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHH
Confidence                                                    0024456789999999977  7776555667778888888


Q ss_pred             HHHhhc
Q psy14086        312 FILKHK  317 (324)
Q Consensus       312 fi~~~~  317 (324)
                      -|+..+
T Consensus       173 ~i~~L~  178 (181)
T d1beda_         173 LVNYLL  178 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777554

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.42  E-value=0.00059  Score=53.37  Aligned_cols=89  Identities=9%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc---------------------------cchhhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT---------------------------QHRSICQS  148 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~---------------------------~~~~~~~~  148 (324)
                      .+.+++.|| +.||+.|....+.|.+++.+|+.. ++.++.+.++                           .+..+++.
T Consensus        29 Gk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          29 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            334566666 899999999999999999998753 4555555432                           23568888


Q ss_pred             CCc-------cccceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086        149 FDI-------KSYPTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK  186 (324)
Q Consensus       149 ~~i-------~~~P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~  186 (324)
                      ||+       ...|+++++++ |.....+.    -.++.+++.+.|..+-
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ  157 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  157 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHh
Confidence            998       35799999977 44322222    2368999999987654

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.42  E-value=0.00031  Score=44.20  Aligned_cols=72  Identities=13%  Similarity=0.104  Sum_probs=51.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEE  308 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~  308 (324)
                      +..|..++|+.|......+.+.    .    .+.+..+|++.  ++++.++|+.. +|.+.  .+|+..  ..-.++.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~~----~----~~~~~~vdI~~--d~~l~~~y~~~-IPVl~--~~~~~~--l~w~fd~~~   66 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQA----R----AGAFFSVFIDD--DAALESAYGLR-VPVLR--DPMGRE--LDWPFDAPR   66 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT----T----CCCEEEEECTT--CHHHHHHHTTT-CSEEE--CTTCCE--EESCCCHHH
T ss_pred             EEEECCCCccHHHHHHHHHHhc----c----CCcEEEEEccC--CHHHHHHhCCe-eeEEE--ECCeeE--EcCccCHHH
Confidence            5678999999998765443221    1    36788899998  89999999985 89664  344332  123479999


Q ss_pred             HHHHHHh
Q psy14086        309 LYQFILK  315 (324)
Q Consensus       309 l~~fi~~  315 (324)
                      +.+||..
T Consensus        67 l~~~L~~   73 (75)
T d1ttza_          67 LRAWLDA   73 (75)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999864

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00041  Score=52.18  Aligned_cols=46  Identities=24%  Similarity=0.360  Sum_probs=37.0

Q ss_pred             ccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086        223 IKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ  270 (324)
Q Consensus       223 ~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~  270 (324)
                      ..+++++|.++|+||+.|.+..+.|+++..++...  ++.+..+-+..
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~--g~~Il~fP~nq   67 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQ   67 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc--ceeEEEeeccc
Confidence            35789999999999999999899999999776544  56676666543

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.39  E-value=0.00022  Score=52.85  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             CCCEEEEEeCC-CCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-------------------------chhhhhhCC
Q psy14086         97 LGNHFVKFYAP-WCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-------------------------HRSICQSFD  150 (324)
Q Consensus        97 ~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-------------------------~~~~~~~~~  150 (324)
                      .+.+++.||.. ||+.|....+.|++++.+|+.. .+.++.+..+.                         +..+++.||
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            44578888855 9999999999999999999653 45555555432                         256777787


Q ss_pred             cc------ccceEEEEeC-CeEeeeecCC----CCHHHHHHHHHhh
Q psy14086        151 IK------SYPTLLWIES-GKKLDKFQGS----RTLETLVNYVSKM  185 (324)
Q Consensus       151 i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~i~~fi~~~  185 (324)
                      +.      ..|+.+++++ |.....+.+.    ++.+++.+-|..+
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal  155 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA  155 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhc
Confidence            74      3577888877 5443333322    3556666665543

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.36  E-value=0.00049  Score=52.26  Aligned_cols=89  Identities=12%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------cchhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------QHRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~~~~~~  147 (324)
                      .+.+++.|| +.||+.|......|+++..+|... ++.++.|..+                            .+..+++
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            456688888 899999999999999999999753 5666655543                            2256888


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeec----CCCCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQ----GSRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~----g~~~~~~i~~fi~~~~  186 (324)
                      .||+-      ..|+.+++++ |.....+.    -.+..+++.+.|+.+-
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ  161 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  161 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhh
Confidence            88883      4677888877 54433332    2368899999887754

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.34  E-value=0.00041  Score=43.67  Aligned_cols=67  Identities=12%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---hhhhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---RSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      ++.|..++|++|......|.+.        ++.|..+|++.+   ....+.+|.+++|.+++  +|+    +.|.+..+.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~----~igGf~~d~   68 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE----HWSGFRPER   68 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE----EEESCCHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE----EEeCCCHhH
Confidence            5789999999999988777653        355555565544   34556779999997754  553    345556777


Q ss_pred             HHHH
Q psy14086        178 LVNY  181 (324)
Q Consensus       178 i~~f  181 (324)
                      |.+.
T Consensus        69 l~~L   72 (74)
T d1r7ha_          69 IKQL   72 (74)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.31  E-value=0.00082  Score=50.98  Aligned_cols=89  Identities=11%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--------------------------ccchhhh
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--------------------------ELSKDLC  277 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~  277 (324)
                      ++.+++.|| +.||+.|......+.++..++...  ++.+..|+.+.                          +....++
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~--g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~  110 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  110 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccC--ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHH
Confidence            568999999 899999999999999998675444  57777777653                          1234678


Q ss_pred             hhcCCC------ccceEEEE-ecCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        278 NQEGVD------GFPSIYVY-KNGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       278 ~~~~i~------~~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      +.||+-      .+|+.++. ++|.....+.+    .+..+++.+.|+.
T Consensus       111 ~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         111 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            888882      35667666 46765443322    2678999988875

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.31  E-value=0.00044  Score=43.53  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-cchhhhhhcCCCccceEEEEecCeeeeeecCCCCHH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLE  307 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~  307 (324)
                      ++.|..++|++|......|++.         ++.|..+|++.. +..+..+.++..++|.++  -+|+.+    |..+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~---------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~~i----gGf~~d   67 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA---------GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEHW----SGFRPE   67 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEEE----ESCCHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc---------CCceEEEEccCCHHHHHHHHHhCCCCcCEEE--ECCEEE----eCCCHh
Confidence            5789999999999988777553         356666777661 123344667888999874  466543    334566


Q ss_pred             HHHH
Q psy14086        308 ELYQ  311 (324)
Q Consensus       308 ~l~~  311 (324)
                      .|.+
T Consensus        68 ~l~~   71 (74)
T d1r7ha_          68 RIKQ   71 (74)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=0.0015  Score=47.44  Aligned_cols=95  Identities=12%  Similarity=0.133  Sum_probs=57.3

Q ss_pred             ccccccCCcEEEEE-eCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhh
Q psy14086        219 FNDVIKSGTVFIKF-FAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDL  276 (324)
Q Consensus       219 ~~~~~~~~~~~v~f-~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~  276 (324)
                      +.++...+.+++.| ++.||+.|....+.+.++..++...  ++.+..++.+..                     ....+
T Consensus        23 lsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~--~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  100 (153)
T d1xvwa1          23 LRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV  100 (153)
T ss_dssp             GGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred             HHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc--ccccccccchhhhHHHHHhhhhccceeEEecccccchh
Confidence            33444334555554 4889999999999998888564333  677777776651                     12346


Q ss_pred             hhhcCCC------ccceEEEE-ecCeeeeeec---C-CCCHHHHHHHHHh
Q psy14086        277 CNQEGVD------GFPSIYVY-KNGVRTAEYN---G-SRDLEELYQFILK  315 (324)
Q Consensus       277 ~~~~~i~------~~P~l~~~-~~g~~~~~~~---g-~~~~~~l~~fi~~  315 (324)
                      .+.|++.      ..|+.+++ ++|+....+.   | .++..++.+-|..
T Consensus       101 ~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~a  150 (153)
T d1xvwa1         101 SQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  150 (153)
T ss_dssp             HHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHh
Confidence            6777763      23566666 5676543332   2 2456667666554

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=0.00025  Score=52.79  Aligned_cols=89  Identities=11%  Similarity=0.252  Sum_probs=60.4

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chhhh
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRSIC  146 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~~~  146 (324)
                      .++++++.|| +.||+.|....+.+++...++... .+.++.+..+.                            ...++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            3445778888 899999999999999999998653 45555554431                            24677


Q ss_pred             hhCCcc-----ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086        147 QSFDIK-----SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       147 ~~~~i~-----~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                      +.||+.     ..|+.+++++ |.....+.+    .++.+++.+.|+.+
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            788874     4677888877 543322221    24677787777654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.001  Score=50.49  Aligned_cols=113  Identities=13%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             cchhhhhhCCccccceEEEEeCCeEeeeecC--CCC----HHHHHHHHHhhhCCCCCCCCCCccccCCCCCCCCCCeeEe
Q psy14086        141 QHRSICQSFDIKSYPTLLWIESGKKLDKFQG--SRT----LETLVNYVSKMKGPLNKKADSPDAENASEVPVKPEPVVSL  214 (324)
Q Consensus       141 ~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g--~~~----~~~i~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  214 (324)
                      .....++.+||+++|++++  +|+....-.+  ..+    .+++.+-+..++......   .     .....+......|
T Consensus        38 ~~~~~a~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~---~-----~~~~~eG~~Y~~l  107 (195)
T d1un2a_          38 QQEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGG---T-----GAQYEDGKQYTTL  107 (195)
T ss_dssp             HHHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC-----------------CCBTTTEEEC
T ss_pred             HHHHHHHHhCCCcCCEEEE--CCeeeeccccccccchhhhHHHHHHHHHHHHhCcccc---c-----CCCCCCCCcceEC
Confidence            3456788999999999876  6765543332  223    344444444444322100   0     0001111122222


Q ss_pred             ccccccccccCCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcC-CCCeEEEEEecC
Q psy14086        215 TSENFNDVIKSGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDN-KHGIVIAKVDCT  269 (324)
Q Consensus       215 ~~~~~~~~~~~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~~id~~  269 (324)
                      .     .-+.+.+.++.|++-+|++|..+.|.+..+. ++... ..++.|......
T Consensus       108 ~-----~p~~~~~~VvEffsy~Cp~C~~~e~~l~~~~-~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         108 E-----KPVAGAPQVLEFFSFFCPHCYQFEEVLHISD-NVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             S-----SCCTTCCSEEEEECTTCHHHHHHHHTSCHHH-HHTTSSCTTCCEEEEECS
T ss_pred             C-----CCCCCCceEEEEEecCCccccccchhhhHHH-HHHhhcCCCcEEEEEecC
Confidence            1     1123457788999999999999999887554 22221 124566655543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.00086  Score=48.77  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=56.0

Q ss_pred             CCCEEE-EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCcc
Q psy14086         97 LGNHFV-KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDIK  152 (324)
Q Consensus        97 ~~~~~v-~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i~  152 (324)
                      ++.+++ .|++.||+.|....+.+.+++.++... ++.++.+..+.                       ...+++.||+.
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~-~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhccc-ccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhh
Confidence            344444 445899999999999999999998753 56666665432                       24567778764


Q ss_pred             ------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086        153 ------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       153 ------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                            ..|+.++++. |.....+.+    ..+..++.+-|..+
T Consensus       108 ~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             hhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence                  2456777865 544322221    24566776666543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0018  Score=47.15  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             cCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCC--CCeEEEEEecCCc--------------------------cch
Q psy14086        224 KSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNK--HGIVIAKVDCTQE--------------------------LSK  274 (324)
Q Consensus       224 ~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~--~~~~~~~id~~~~--------------------------~~~  274 (324)
                      .+++++|.|+.+||+ .|....+.+.++...+-...  ..+.+..+..+..                          ...
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            568999999999997 69888888877764432221  2344444443220                          001


Q ss_pred             hhhhhcCCCcc---------------ceEEEE-ecCeeeeeecCCCCHHHHHHHHHhhccc
Q psy14086        275 DLCNQEGVDGF---------------PSIYVY-KNGVRTAEYNGSRDLEELYQFILKHKVE  319 (324)
Q Consensus       275 ~~~~~~~i~~~---------------P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~~~~  319 (324)
                      .+...|++...               ++++++ ++|+.+..|.+..+.+++.+-|.+.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~  159 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP  159 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhc
Confidence            23344554322               466667 6788888888788899999988887753

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00053  Score=50.14  Aligned_cols=92  Identities=11%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             cCCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcCCCC---CeEEEEeccc--cc--------------------------h
Q psy14086         96 SLGNHFVKFYAPWCG-HCQSLAPVWQELASHFKTEE---DVSIAKIDCT--QH--------------------------R  143 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~~---~i~~~~vd~~--~~--------------------------~  143 (324)
                      ..++++|.|+.+||+ .|....+.+.++.+.+....   .+.+..+..+  ..                          .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            456789999999996 69888888888877654321   2333333221  11                          2


Q ss_pred             hhhhhCCcc---------------ccceEEEEeC-CeEeeeecCCCCHHHHHHHHHhhhC
Q psy14086        144 SICQSFDIK---------------SYPTLLWIES-GKKLDKFQGSRTLETLVNYVSKMKG  187 (324)
Q Consensus       144 ~~~~~~~i~---------------~~P~~~~~~~-g~~~~~~~g~~~~~~i~~fi~~~~~  187 (324)
                      .+...|++.               +.++++++++ |+....|.+..++++|.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            344445533               3467788876 7777778778899999999988875

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.0028  Score=46.92  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=41.2

Q ss_pred             CeeEecccc--ccccccCCcEEEEEeCCCCh-hhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086        210 PVVSLTSEN--FNDVIKSGTVFIKFFAPWCG-HCKRLAPTWEELGTKLLDNKHGIVIAKVDCT  269 (324)
Q Consensus       210 ~v~~l~~~~--~~~~~~~~~~~v~f~~~~c~-~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~  269 (324)
                      .++..+++.  +.++ .+++++|.|+.+||+ .|....+.+.++...+.....++.++.|..+
T Consensus        15 ~l~d~~G~~vsl~d~-~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          15 TFQNQDGKNVSLESL-KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             EEECTTSCEEETGGG-TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             EEEcCCCCEEcHHHh-CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            444444544  3333 567899999999997 6999999999887665443446777777654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.23  E-value=0.0013  Score=48.04  Aligned_cols=89  Identities=16%  Similarity=0.283  Sum_probs=60.1

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------cchhhh
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------LSKDLC  277 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------~~~~~~  277 (324)
                      ++++++.|| +.||+.|....+.++++..++...  +..+.-|..+..                          ....+.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~--~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  103 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  103 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcC--CceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHH
Confidence            568999999 889999999999999988776555  455665665430                          123556


Q ss_pred             hhcCCC------ccceEEEE-ecCeeeeeecC----CCCHHHHHHHHHh
Q psy14086        278 NQEGVD------GFPSIYVY-KNGVRTAEYNG----SRDLEELYQFILK  315 (324)
Q Consensus       278 ~~~~i~------~~P~l~~~-~~g~~~~~~~g----~~~~~~l~~fi~~  315 (324)
                      +.|++.      ..|+.++. ++|.....+.+    .++.+++.+.|+.
T Consensus       104 ~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         104 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            677764      34556666 56765433322    2567888888864

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00057  Score=44.31  Aligned_cols=77  Identities=21%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhc--CCCccceEEEEecCeeeeeecCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQE--GVDGFPSIYVYKNGVRTAEYNGSR  304 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~--~i~~~P~l~~~~~g~~~~~~~g~~  304 (324)
                      +|.|..++|+.|......|.++..+ +.   .+.+..+|.+..  ....+.+..  +++++|.+  |-+|+-+    |. 
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~-~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqI--fi~g~~I----GG-   71 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNE-RD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHI----GG-   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHH-HS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEE----ES-
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCC-CC---CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEE--EECCEEE----EC-
Confidence            6789999999999999999998854 33   367777776441  122333332  34679997  4476543    44 


Q ss_pred             CHHHHHHHHHhhc
Q psy14086        305 DLEELYQFILKHK  317 (324)
Q Consensus       305 ~~~~l~~fi~~~~  317 (324)
                       .+++.+++++++
T Consensus        72 -~~el~~~~~~~~   83 (85)
T d1egoa_          72 -YTDFAAWVKENL   83 (85)
T ss_dssp             -SHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC
Confidence             367888887664

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00038  Score=44.10  Aligned_cols=64  Identities=11%  Similarity=0.243  Sum_probs=43.9

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh---hhhcCCCccceEEEEecCeeeeeecCCCC
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL---CNQEGVDGFPSIYVYKNGVRTAEYNGSRD  305 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~---~~~~~i~~~P~l~~~~~g~~~~~~~g~~~  305 (324)
                      ++.|..+||+.|......|.+.         ++.|..+|++.  +++.   .+..|.+++|.+++  +|+.+   .| ..
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~---------~i~y~~~~i~~--~~~~~~~~~~~g~~tvP~i~i--~~~~i---~G-f~   65 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR---------GFDFEMINVDR--VPEAAEALRAQGFRQLPVVIA--GDLSW---SG-FR   65 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTT--CHHHHHHHHHTTCCSSCEEEE--TTEEE---ES-CC
T ss_pred             EEEEeCCCCccHHHHHHHHHhc---------CceeEEEeecC--CHHHHHHHHhcCCCCCCEEEE--CCEEE---EC-CC
Confidence            5688999999999988777554         35677778877  4433   34568889999865  55433   23 45


Q ss_pred             HHHH
Q psy14086        306 LEEL  309 (324)
Q Consensus       306 ~~~l  309 (324)
                      .+.|
T Consensus        66 ~d~i   69 (76)
T d1h75a_          66 PDMI   69 (76)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.02  E-value=0.0016  Score=47.57  Aligned_cols=88  Identities=15%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------cchhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------QHRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~~~~~~  147 (324)
                      .+++++.|| +.||+.|....+.+++++.++... ...++.+..+                            ....+++
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            456789999 889999999999999999988653 3444433332                            1245777


Q ss_pred             hCCcc------ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKM  185 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~  185 (324)
                      .||+.      ..|+.+++++ |.....+.+    ..+.+++.+.|..+
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkal  153 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  153 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            78876      2556777766 544332322    35688888888743

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00053  Score=43.39  Aligned_cols=65  Identities=6%  Similarity=0.129  Sum_probs=45.0

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh---hhhhCCccccceEEEEeCCeEeeeecCCCCHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS---ICQSFDIKSYPTLLWIESGKKLDKFQGSRTLET  177 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~  177 (324)
                      ++.|..+||+.|......|.+.        ++.|..+|++.++.   ..+..|.+++|.+++  +|+.    .|.+.++.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~----i~Gf~~d~   68 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS----WSGFRPDM   68 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE----EESCCHHH
T ss_pred             EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE----EECCCHHH
Confidence            5779999999999988777653        36666777766543   345568999998765  4432    34556666


Q ss_pred             HH
Q psy14086        178 LV  179 (324)
Q Consensus       178 i~  179 (324)
                      |.
T Consensus        69 i~   70 (76)
T d1h75a_          69 IN   70 (76)
T ss_dssp             HG
T ss_pred             HH
Confidence            53

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.91  E-value=0.0028  Score=46.85  Aligned_cols=96  Identities=15%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--------------------------
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--------------------------  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--------------------------  271 (324)
                      +.++..+++++|+|| +.||+.|......+++...++...  ++.+..|+.+..                          
T Consensus        21 L~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~--g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD   98 (170)
T d2h01a1          21 LSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISD   98 (170)
T ss_dssp             GGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEEC
T ss_pred             hHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC--CeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEc
Confidence            445554567889998 799999999999999888665444  577777776631                          


Q ss_pred             cchhhhhhcCCC-----ccceEEEE-ecCeeeeeecCC----CCHHHHHHHHHhh
Q psy14086        272 LSKDLCNQEGVD-----GFPSIYVY-KNGVRTAEYNGS----RDLEELYQFILKH  316 (324)
Q Consensus       272 ~~~~~~~~~~i~-----~~P~l~~~-~~g~~~~~~~g~----~~~~~l~~fi~~~  316 (324)
                      ....+.+.||+-     ..++.+++ ++|.....+.+.    ++.+++++.|+..
T Consensus        99 ~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1          99 ISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             TTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             CccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            123566777762     23566666 566554444322    3667888887653

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00092  Score=50.76  Aligned_cols=106  Identities=14%  Similarity=0.311  Sum_probs=56.6

Q ss_pred             cchhhhccCCCccCCceEEEecCCcccccccCCC--CC----hH---HHHHHHHhhhcCCCCCCCCCCCCCCCceEcChh
Q psy14086         19 VEKQLCADQEITGYPTLKFFKKGSESEASKFRGT--RD----LP---TLTNFINEQISETPKEPSDKPIVNEGLVELTEE   89 (324)
Q Consensus        19 ~~~~l~~~~~I~~~Pti~~f~~~~~~~~~~y~G~--~~----~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (324)
                      .+..+++++||++.||+++ +  | ...+.-.+.  .+    .+   ++++||.++.+....   ...........++..
T Consensus        38 ~~~~~a~~~gi~GtPtfiV-n--G-ky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~---~~~~eG~~Y~~l~~p  110 (195)
T d1un2a_          38 QQEKAAADVQLRGVPAMFV-N--G-KYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTG---AQYEDGKQYTTLEKP  110 (195)
T ss_dssp             HHHHHHHHTTCCSSSEEEE-T--T-TEEECGGGSCCSSHHHHHHHHHHHHHHHTC------------CCBTTTEEECSSC
T ss_pred             HHHHHHHHhCCCcCCEEEE-C--C-eeeeccccccccchhhhHHHHHHHHHHHHhCcccccC---CCCCCCCcceECCCC
Confidence            3556889999999999766 2  3 123322222  22    22   345566444322100   001111122223221


Q ss_pred             hHHHHhcCCCEEEEEeCCCCHhHhhHHHHHH---HHHHhcCCCCCeEEEEec
Q psy14086         90 SFEKYVSLGNHFVKFYAPWCGHCQSLAPVWQ---ELASHFKTEEDVSIAKID  138 (324)
Q Consensus        90 ~f~~~~~~~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~i~~~~vd  138 (324)
                           +.+.+.++.|++-+|++|..+.|.+.   ++.+.+..  .+.|..+.
T Consensus       111 -----~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~--~v~~~~~~  155 (195)
T d1un2a_         111 -----VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYH  155 (195)
T ss_dssp             -----CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEE
T ss_pred             -----CCCCceEEEEEecCCccccccchhhhHHHHHHhhcCC--CcEEEEEe
Confidence                 12446699999999999999999775   55666666  45555443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0023  Score=47.07  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=29.8

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEec
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKID  138 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd  138 (324)
                      .+++++.|| +.||+.|....+.|++++.++++   +.++.|.
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~vv~Is   83 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN---TVVLCIS   83 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT---EEEEEEE
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhcc---ceeeeEE
Confidence            456677777 77999999999999999988764   5555443

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.76  E-value=0.0015  Score=44.14  Aligned_cols=67  Identities=16%  Similarity=0.296  Sum_probs=46.1

Q ss_pred             HHHhcCCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh-----hhhhCCccccceEEEEeCCe
Q psy14086         92 EKYVSLGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS-----ICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus        92 ~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~-----~~~~~~i~~~P~~~~~~~g~  164 (324)
                      ++.+.+.+ +++|..+||++|......|.++...+.   .+.+..+|...+..     +.+..|.+++|.+++  +|+
T Consensus         6 ~~~i~~~~-Vviysk~~Cp~C~~ak~ll~~~~~~~~---~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_           6 NSKIQPGK-VVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             HHHCCTTC-EEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             HHHhccCC-EEEEECCCCchHHHHHHHHHHhCCccc---eeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            33444444 778999999999999988887665544   37788887665432     333347778998765  564

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.62  E-value=0.0095  Score=44.48  Aligned_cols=91  Identities=14%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc-----------------------cchhhhhh
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE-----------------------LSKDLCNQ  279 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~  279 (324)
                      .++.++++|| ..||+.|....+.+++...++...  ++.+..++.+..                       ....+++.
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~--~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~  106 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  106 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc--cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHH
Confidence            3567899999 677888999999999998775444  566666666551                       12366777


Q ss_pred             cCCC------ccceEEEE-ecCeeeee--ec--CCCCHHHHHHHHHhh
Q psy14086        280 EGVD------GFPSIYVY-KNGVRTAE--YN--GSRDLEELYQFILKH  316 (324)
Q Consensus       280 ~~i~------~~P~l~~~-~~g~~~~~--~~--g~~~~~~l~~fi~~~  316 (324)
                      ||+-      ..|+.++. ++|.....  +.  -.++.+++.+.|+..
T Consensus       107 yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         107 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            8873      34566666 46765332  22  236888988888753

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0071  Score=45.17  Aligned_cols=27  Identities=19%  Similarity=0.544  Sum_probs=21.2

Q ss_pred             CCEEEEEeCCCCHhHhhHHHHHHHHHH
Q psy14086         98 GNHFVKFYAPWCGHCQSLAPVWQELAS  124 (324)
Q Consensus        98 ~~~~v~f~~~~c~~c~~~~~~~~~la~  124 (324)
                      .+.+|.|++-.|++|+.+.+.+..+.+
T Consensus        19 ~~~VvEffdy~Cp~C~~~~~~l~~~~~   45 (188)
T d1fvka_          19 APQVLEFFSFFCPHCYQFEEVLHISDN   45 (188)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTTCHHHH
T ss_pred             CCEEEEEECCCChhhHHHHHHHHHHHH
Confidence            346889999999999999987744433

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.57  E-value=0.002  Score=47.66  Aligned_cols=92  Identities=15%  Similarity=0.343  Sum_probs=62.7

Q ss_pred             HhcCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc----------------------------chh
Q psy14086         94 YVSLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ----------------------------HRS  144 (324)
Q Consensus        94 ~~~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~----------------------------~~~  144 (324)
                      +..++++++.|| +.||+.|......|++.+..|... .+.++.|.++.                            ...
T Consensus        24 ~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~  102 (170)
T d2h01a1          24 FIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKS  102 (170)
T ss_dssp             GTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSH
T ss_pred             HCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccH
Confidence            334456778888 899999999999999999998653 56666665441                            246


Q ss_pred             hhhhCCcc-----ccceEEEEeC-CeEeeeecC----CCCHHHHHHHHHhhh
Q psy14086        145 ICQSFDIK-----SYPTLLWIES-GKKLDKFQG----SRTLETLVNYVSKMK  186 (324)
Q Consensus       145 ~~~~~~i~-----~~P~~~~~~~-g~~~~~~~g----~~~~~~i~~fi~~~~  186 (324)
                      +++.||+.     ..++.+++++ |.....+.+    .++.+++.+.|..+-
T Consensus       103 ~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq  154 (170)
T d2h01a1         103 IARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  154 (170)
T ss_dssp             HHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHHHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhh
Confidence            77788873     2467777766 544333322    246788888887653

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0058  Score=45.67  Aligned_cols=45  Identities=16%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             CCcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecC
Q psy14086        225 SGTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCT  269 (324)
Q Consensus       225 ~~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~  269 (324)
                      +.+.+|.|++-.|++|+.+.+.+..+..........+.+......
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            346788899999999999998876555322222234566665543

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.022  Score=43.70  Aligned_cols=95  Identities=11%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             HHHHhcCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-----------------------------
Q psy14086         91 FEKYVSLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-----------------------------  140 (324)
Q Consensus        91 f~~~~~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-----------------------------  140 (324)
                      +.++..++++++.|| +.||+.|......|++...+|... ++.++.+.++                             
T Consensus        21 Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpll   99 (220)
T d1prxa_          21 FHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPII   99 (220)
T ss_dssp             HHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEE
T ss_pred             eHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeeccccccccchhhhhhhhhhccccccccCcccccc
Confidence            445555555667777 689999999999999999999763 3444443322                             


Q ss_pred             --cchhhhhhCCcc------------ccceEEEEeC-CeEeee--ec--CCCCHHHHHHHHHhhh
Q psy14086        141 --QHRSICQSFDIK------------SYPTLLWIES-GKKLDK--FQ--GSRTLETLVNYVSKMK  186 (324)
Q Consensus       141 --~~~~~~~~~~i~------------~~P~~~~~~~-g~~~~~--~~--g~~~~~~i~~fi~~~~  186 (324)
                        .+..+++.||+-            ..++++++++ |.....  |.  -.++.+++.+-|..+.
T Consensus       100 sD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~alq  164 (220)
T d1prxa_         100 DDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  164 (220)
T ss_dssp             ECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             cCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHHh
Confidence              235788888874            3467888877 433222  22  2368899988887654

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.49  E-value=0.0089  Score=44.65  Aligned_cols=89  Identities=10%  Similarity=0.054  Sum_probs=61.0

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc-------------------------cchhhhhhCC
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT-------------------------QHRSICQSFD  150 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~-------------------------~~~~~~~~~~  150 (324)
                      .+.+++.|| ..||+.|....+.|++.+.+|... ++.++.+..+                         .+..+++.||
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            445678888 788899999999999999998643 4454444433                         2256777888


Q ss_pred             cc------ccceEEEEeC-CeEeeee--c--CCCCHHHHHHHHHhhh
Q psy14086        151 IK------SYPTLLWIES-GKKLDKF--Q--GSRTLETLVNYVSKMK  186 (324)
Q Consensus       151 i~------~~P~~~~~~~-g~~~~~~--~--g~~~~~~i~~fi~~~~  186 (324)
                      +.      ..|+.+++++ |.....+  .  -.++.+++.+.|+.+.
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            74      3577888877 5432222  1  2468899998888665

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.48  E-value=0.01  Score=43.33  Aligned_cols=86  Identities=6%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc-----------------------chhhhhhCCc
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ-----------------------HRSICQSFDI  151 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~-----------------------~~~~~~~~~i  151 (324)
                      ..+++++.|| +.||+.|....+.+.+...++.+   +.++.|..+.                       ...+.+.||+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv  117 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN---TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT---EEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc---cceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhhee
Confidence            3456677777 78999999999999888888764   5555554331                       1346667776


Q ss_pred             cc--c----ceEEEEeC-CeEeeeec-----CCCCHHHHHHHHHh
Q psy14086        152 KS--Y----PTLLWIES-GKKLDKFQ-----GSRTLETLVNYVSK  184 (324)
Q Consensus       152 ~~--~----P~~~~~~~-g~~~~~~~-----g~~~~~~i~~fi~~  184 (324)
                      ..  +    ++.++++. |.......     ...+.+.+.+.++.
T Consensus       118 ~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence            42  2    35677765 54432211     23466778777754

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.47  E-value=0.002  Score=41.23  Aligned_cols=67  Identities=10%  Similarity=0.202  Sum_probs=44.0

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccch----hhhhhCCccccceEEEEeCCeEeeeecCCCCHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHR----SICQSFDIKSYPTLLWIESGKKLDKFQGSRTLE  176 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~  176 (324)
                      +..|..+||++|.+....|++.        ++.|..+|++.+.    .+.+..|.+++|.+++  +|+.    .|..  +
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~~----IGG~--~   66 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQH----IGGY--D   66 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEE----EESH--H
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCEE----EecH--H
Confidence            5679999999999988777653        3556666666443    3455568889998754  5543    3442  4


Q ss_pred             HHHHHHH
Q psy14086        177 TLVNYVS  183 (324)
Q Consensus       177 ~i~~fi~  183 (324)
                      ++.++.+
T Consensus        67 el~~l~~   73 (82)
T d1fova_          67 DLYALDA   73 (82)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.011  Score=43.59  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             cCCCEEEEEeCCCCH-hHhhHHHHHHHHHHhcCCC-CCeEEEEecc
Q psy14086         96 SLGNHFVKFYAPWCG-HCQSLAPVWQELASHFKTE-EDVSIAKIDC  139 (324)
Q Consensus        96 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~i~~~~vd~  139 (324)
                      ..++++|.|+.+||+ .|....+.+.++...+... .++.++.|..
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isi   75 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSV   75 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhcccccccccccccc
Confidence            466789999999997 6999999999988887432 2465555543

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.41  E-value=0.0023  Score=40.92  Aligned_cols=69  Identities=14%  Similarity=0.341  Sum_probs=43.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc--cchhhhhhcCCCccceEEEEecCeeeeeecCCCCH
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE--LSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDL  306 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~  306 (324)
                      +.+|..+||++|......|++.         ++.|..+|.+..  ...++.+..|..++|.++  -+|+-+    |.  .
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~---------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~I----GG--~   65 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK---------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI----GG--Y   65 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH---------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE----ES--H
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc---------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE--ECCEEE----ec--H
Confidence            5678899999999988777654         345666676651  112444556888899874  466543    33  3


Q ss_pred             HHHHHHHH
Q psy14086        307 EELYQFIL  314 (324)
Q Consensus       307 ~~l~~fi~  314 (324)
                      +++.+...
T Consensus        66 ~el~~l~~   73 (82)
T d1fova_          66 DDLYALDA   73 (82)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45555443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.013  Score=42.80  Aligned_cols=43  Identities=16%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ  270 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~  270 (324)
                      .++++++.|| +.||+.|....+.+++++.+ +.   ++.+..|..+.
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~-~~---~~~vv~Is~d~   86 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATE-ID---NTVVLCISADL   86 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHT-ST---TEEEEEEESSC
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHh-hc---cceeeeEEcCC
Confidence            3567777777 67999999999999988754 32   46666666553

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.32  E-value=0.067  Score=35.17  Aligned_cols=104  Identities=20%  Similarity=0.206  Sum_probs=76.4

Q ss_pred             ceEcChhhHHHHhcC---CCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhh----hhCCcc-cc
Q psy14086         83 LVELTEESFEKYVSL---GNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSIC----QSFDIK-SY  154 (324)
Q Consensus        83 ~~~l~~~~f~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~----~~~~i~-~~  154 (324)
                      ++.+..++..+....   +..++.|--+..+.-.++...++++|+.+..+.++.|+-+|-+..+-+.    +.|+|. .-
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~   81 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSA   81 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTS
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCC
Confidence            456667776666643   3468888888888999999999999999998888999999998876544    457877 46


Q ss_pred             ceEEEEeCCe-Eeeeec--C---CCCHHHHHHHHHhhh
Q psy14086        155 PTLLWIESGK-KLDKFQ--G---SRTLETLVNYVSKMK  186 (324)
Q Consensus       155 P~~~~~~~g~-~~~~~~--g---~~~~~~i~~fi~~~~  186 (324)
                      |.|-+.+-.. ...=|.  +   -.+++.+.+||.+.+
T Consensus        82 PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          82 PQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             CEEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             CceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence            9998886532 111121  1   248999999998753

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.027  Score=43.14  Aligned_cols=95  Identities=11%  Similarity=0.233  Sum_probs=62.4

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC---------------------------
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ---------------------------  270 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~---------------------------  270 (324)
                      +.+...++.++++|| +.||+.|......+++...++...  ++.+.-+.++.                           
T Consensus        21 Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~--g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpl   98 (220)
T d1prxa_          21 FHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR--NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPI   98 (220)
T ss_dssp             HHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCE
T ss_pred             eHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc--cceeeccccccccchhhhhhhhhhccccccccCccccc
Confidence            445555567888888 579999999999999988665544  45555555542                           


Q ss_pred             --ccchhhhhhcCCC------------ccceEEEE-ecCeeee--eecC--CCCHHHHHHHHHh
Q psy14086        271 --ELSKDLCNQEGVD------------GFPSIYVY-KNGVRTA--EYNG--SRDLEELYQFILK  315 (324)
Q Consensus       271 --~~~~~~~~~~~i~------------~~P~l~~~-~~g~~~~--~~~g--~~~~~~l~~fi~~  315 (324)
                        +....+++.||+-            ..++++++ ++|....  .|..  .++.+++.+-|..
T Consensus        99 lsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~a  162 (220)
T d1prxa_          99 IDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS  162 (220)
T ss_dssp             EECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             ccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHH
Confidence              1234677778763            24567777 4665432  2222  2688999887765

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.016  Score=43.68  Aligned_cols=89  Identities=13%  Similarity=0.247  Sum_probs=61.8

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------cchhhhh
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------QHRSICQ  147 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------~~~~~~~  147 (324)
                      .+.+++.|| ..||+.|......|++...+|... .+.++.+.++                            ....+++
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            445677787 899999999999999999999763 4555555443                            2256777


Q ss_pred             hCCcc------ccceEEEEeC-CeEeee--ecC--CCCHHHHHHHHHhhh
Q psy14086        148 SFDIK------SYPTLLWIES-GKKLDK--FQG--SRTLETLVNYVSKMK  186 (324)
Q Consensus       148 ~~~i~------~~P~~~~~~~-g~~~~~--~~g--~~~~~~i~~fi~~~~  186 (324)
                      .||+-      .+|+.+++++ |.....  +..  .++.+++.+.|+.+.
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhc
Confidence            88874      3677888876 433222  221  368889988887764

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.0042  Score=38.73  Aligned_cols=58  Identities=14%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccc-hhhhhhcCCCccceEEEEecCeee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELS-KDLCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      ++.|..++|+.|+.+...|++..         +.|..++.+.... ..+.+..+...+|.++  -+|+-+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~~---------i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDKG---------LSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT---------CCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC---------CCeEEEEccCcHHHHHHHHHhCCccCCEEE--ECCEEE
Confidence            67899999999999988877653         4455566555212 2344556788899873  466433

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.021  Score=42.92  Aligned_cols=90  Identities=13%  Similarity=0.273  Sum_probs=61.5

Q ss_pred             CCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--------------------------ccchhhh
Q psy14086        225 SGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--------------------------ELSKDLC  277 (324)
Q Consensus       225 ~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~  277 (324)
                      ++.++++|| ..||+.|......+.++..++.+.  ++.+..|+.+.                          +....++
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va  111 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL--GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLS  111 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccC--CcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHH
Confidence            567888888 889999999999999988675544  56777777654                          1224667


Q ss_pred             hhcCCC------ccceEEEEe-cCeeeee--ecC--CCCHHHHHHHHHhh
Q psy14086        278 NQEGVD------GFPSIYVYK-NGVRTAE--YNG--SRDLEELYQFILKH  316 (324)
Q Consensus       278 ~~~~i~------~~P~l~~~~-~g~~~~~--~~g--~~~~~~l~~fi~~~  316 (324)
                      +.||+-      .+++.+++. +|.....  +.-  .++.+++.+.|...
T Consensus       112 ~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         112 EDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            777773      356666664 5654332  321  26788998888754

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.10  E-value=0.05  Score=35.82  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=71.7

Q ss_pred             eeEeccccccccccC---CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCC
Q psy14086        211 VVSLTSENFNDVIKS---GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVD  283 (324)
Q Consensus       211 v~~l~~~~~~~~~~~---~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~  283 (324)
                      ++.+...++.+..+.   +-.++.|-.+..+...++.+++.++|++ +..++++.|++||-+.  .+-+    .+.|+|.
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~-nt~n~~LsivWIDPD~--FPlm~~yWe~tF~ID   78 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQD-NTDNPDLSIIWIDPDD--FPLLVPYWEKTFDID   78 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHH-STTCSSCCEEEECGGG--CTTTHHHHHHHHTCC
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHH-cCcCCCceEEEECCcc--cchHHHHHHHhcCCC
Confidence            455666676665544   3477778878888899999999999955 6677789999999776  5433    4568876


Q ss_pred             -ccceEEEEec--Ceeee-eecCC---CCHHHHHHHHHhhc
Q psy14086        284 -GFPSIYVYKN--GVRTA-EYNGS---RDLEELYQFILKHK  317 (324)
Q Consensus       284 -~~P~l~~~~~--g~~~~-~~~g~---~~~~~l~~fi~~~~  317 (324)
                       .-|.|-+..-  ..-+. ...+.   -+.++|.+||.+.+
T Consensus        79 l~~PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          79 LSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             TTSCEEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             CCCCceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence             4599988842  22221 22121   37899999998764

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.09  E-value=0.006  Score=37.99  Aligned_cols=54  Identities=19%  Similarity=0.307  Sum_probs=36.9

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccc---hhhhhhCCccccceEEEEeCCe
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQH---RSICQSFDIKSYPTLLWIESGK  164 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~  164 (324)
                      ++.|..++|+.|+++...|.+..        +.|..+|.+.+   ..+.+..|..++|.+++  +|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~~--------i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDKG--------LSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHT--------CCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCE
Confidence            67899999999999988777643        44444444432   34555678889998754  553

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.88  E-value=0.028  Score=40.98  Aligned_cols=87  Identities=10%  Similarity=0.083  Sum_probs=51.7

Q ss_pred             cCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc--------------------cchhhhhhCCcc--
Q psy14086         96 SLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT--------------------QHRSICQSFDIK--  152 (324)
Q Consensus        96 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~--------------------~~~~~~~~~~i~--  152 (324)
                      ..+++++.|| +.||+.|...++.|++.......  .+..+.+|..                    ....+.+.+|+.  
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g~--~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  119 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASGA--TVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  119 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTTC--EEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccccc--cccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCeeec
Confidence            4557788888 55788899988988888777543  4444443321                    113445566653  


Q ss_pred             -------ccceEEEEeC-CeEeeeec-----CCCCHHHHHHHHHh
Q psy14086        153 -------SYPTLLWIES-GKKLDKFQ-----GSRTLETLVNYVSK  184 (324)
Q Consensus       153 -------~~P~~~~~~~-g~~~~~~~-----g~~~~~~i~~fi~~  184 (324)
                             ..|+.++++. |.......     ...+.+++.+.|..
T Consensus       120 ~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a  164 (166)
T d1xvqa_         120 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  164 (166)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             cCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence                   1367777765 54432221     23466777766654

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.85  E-value=0.0035  Score=42.16  Aligned_cols=61  Identities=16%  Similarity=0.315  Sum_probs=41.1

Q ss_pred             EEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccch-----hhhhhcCCCccceEEEEecCeee
Q psy14086        229 FIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSK-----DLCNQEGVDGFPSIYVYKNGVRT  297 (324)
Q Consensus       229 ~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~i~~~P~l~~~~~g~~~  297 (324)
                      +++|..+||++|......|.++..+    ...+.+..+|...  +.     .+.+..+.+.+|.+  |-+|+-+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~----~~~~~~~e~d~~~--d~~~~~~~l~~~~g~~tvPqI--fi~g~~I   79 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFK----EGLLEFVDITATS--DTNEIQDYLQQLTGARTVPRV--FIGKECI   79 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBC----TTSEEEEEGGGST--THHHHHHHHHHHHSCCCSCEE--EETTEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCc----cceeeeeeccccc--ccHHHHHHHhhccCCCcCcEE--EECCEEE
Confidence            6689999999999999888876522    1246677777655  22     22334577789988  4577544

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.06  Score=38.60  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=24.4

Q ss_pred             CccccceEEEEeC-CeEeeeecCCCCHHH----HHHHHHhhh
Q psy14086        150 DIKSYPTLLWIES-GKKLDKFQGSRTLET----LVNYVSKMK  186 (324)
Q Consensus       150 ~i~~~P~~~~~~~-g~~~~~~~g~~~~~~----i~~fi~~~~  186 (324)
                      .+.+.|+++++++ |+.+.+|.+..+.+.    |.+-|++++
T Consensus       126 ~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         126 LVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             eeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            3556788999977 777777777666655    445554443

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.97  E-value=0.043  Score=39.91  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=28.3

Q ss_pred             cCCcEEEEEeC-CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086        224 KSGTVFIKFFA-PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ  270 (324)
Q Consensus       224 ~~~~~~v~f~~-~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~  270 (324)
                      .++++++.||. .||+.|....+.+++...+ .    ++.++.|..+.
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~-~----g~~vv~Is~d~   84 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-S----GATVLCVSKDL   84 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T----TCEEEEEESSC
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccc-c----cccccccccch
Confidence            45788888985 4777799988888776633 2    34555555443

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.94  E-value=0.12  Score=37.19  Aligned_cols=88  Identities=10%  Similarity=0.112  Sum_probs=52.9

Q ss_pred             cCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCc---------------------cchhhhhhcC
Q psy14086        224 KSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQE---------------------LSKDLCNQEG  281 (324)
Q Consensus       224 ~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~---------------------~~~~~~~~~~  281 (324)
                      .++.++|.|| +.||+.|....+.+.+...+ +.   ++.++.+..+..                     ....+.+.||
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~-~~---~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg  116 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAG-LD---NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYA  116 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTT-CT---TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHT
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHh-hc---ccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhhe
Confidence            4567777787 67999999988888776534 32   466666665541                     1124556677


Q ss_pred             CC--cc----ceEEEE-ecCeeeeee-c----CCCCHHHHHHHHHh
Q psy14086        282 VD--GF----PSIYVY-KNGVRTAEY-N----GSRDLEELYQFILK  315 (324)
Q Consensus       282 i~--~~----P~l~~~-~~g~~~~~~-~----g~~~~~~l~~fi~~  315 (324)
                      +.  .+    ++.+++ ++|...... .    ...+.+++.+.|++
T Consensus       117 v~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         117 LLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             CBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             eecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence            63  22    245556 467654321 1    12356788877754

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=94.89  E-value=0.015  Score=42.35  Aligned_cols=53  Identities=11%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             CCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEecccc---chhhhhhCCcc
Q psy14086         97 LGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQ---HRSICQSFDIK  152 (324)
Q Consensus        97 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~---~~~~~~~~~i~  152 (324)
                      .+++++.|| +.||+.|....+.|++...++++   +.++.+.++.   ...+++.+++.
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~---~~vi~iS~d~~~~~~~~~~~~~~~   98 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN---TIVLCISADLPFAQARFCGAEGIE   98 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT---EEEEEEESSCHHHHTTCTTTTTCT
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc---ceEEeecCCcHHHHHHHHHHhCCc
Confidence            456778888 55777899999999999999975   6666665542   23444444443

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.1  Score=37.25  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=23.0

Q ss_pred             CCccceEEEE-ecCeeeeeecCCCCHHHHHHHHHhh
Q psy14086        282 VDGFPSIYVY-KNGVRTAEYNGSRDLEELYQFILKH  316 (324)
Q Consensus       282 i~~~P~l~~~-~~g~~~~~~~g~~~~~~l~~fi~~~  316 (324)
                      +...|+++++ ++|+.+..|.+..+.+.+.+-|.+.
T Consensus       127 i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~  162 (169)
T d2b7ka1         127 VDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEH  162 (169)
T ss_dssp             TTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHH
T ss_pred             eeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            4456888888 5788887887776666554444433

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=94.54  E-value=0.12  Score=39.33  Aligned_cols=96  Identities=13%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             hHHHHhcCCCEEEEEe-CCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccc----------------------------
Q psy14086         90 SFEKYVSLGNHFVKFY-APWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCT----------------------------  140 (324)
Q Consensus        90 ~f~~~~~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~----------------------------  140 (324)
                      .+.+.+.++.+++.|| +.||+.|......|++.+.+|... ++.++.+.++                            
T Consensus        23 ~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD  101 (219)
T d1xcca_          23 ELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD  101 (219)
T ss_dssp             EHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEEC
T ss_pred             EeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccc
Confidence            3445555666677777 789999999999999999998753 4555544433                            


Q ss_pred             cchhhhhhCCccc------------cceEEEEeCCeEe-e--eec--CCCCHHHHHHHHHhhh
Q psy14086        141 QHRSICQSFDIKS------------YPTLLWIESGKKL-D--KFQ--GSRTLETLVNYVSKMK  186 (324)
Q Consensus       141 ~~~~~~~~~~i~~------------~P~~~~~~~g~~~-~--~~~--g~~~~~~i~~fi~~~~  186 (324)
                      .+..+++.||+-.            ..+.+++++...+ .  .|.  -.++.+++.+.|..+-
T Consensus       102 ~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aLQ  164 (219)
T d1xcca_         102 ESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  164 (219)
T ss_dssp             TTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHHH
Confidence            2246788888731            2466777774332 2  222  2468999999987654

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.53  E-value=0.02  Score=38.51  Aligned_cols=65  Identities=15%  Similarity=0.369  Sum_probs=41.7

Q ss_pred             ccccccCCcEEEEEeC-----CCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhh----hhhcCCCccceEE
Q psy14086        219 FNDVIKSGTVFIKFFA-----PWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDL----CNQEGVDGFPSIY  289 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~~-----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~~~P~l~  289 (324)
                      ++.++.+.+++| |..     |.|+.|......|..+         ++.|..+|.+.  .+++    .+..+.+.+|.| 
T Consensus         8 i~~~i~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~---------~i~~~~~~v~~--~~~~~~~l~~~t~~~TvPqI-   74 (109)
T d1wika_           8 LKVLTNKASVML-FMKGNKQEAKCGFSKQILEILNST---------GVEYETFDILE--DEEVRQGLKTFSNWPTYPQL-   74 (109)
T ss_dssp             HHHHHTTSSEEE-EESSTTTCCCSSTHHHHHHHHHHT---------CSCEEEEESSS--CHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHhcCCEEE-EeCCCCCCCCChHHHHHHHHHHhc---------CCCceEEEecc--cHHHHHHHHHhcCCCCCCeE-
Confidence            455665566665 654     7899999998777543         35566677766  4433    344567788888 


Q ss_pred             EEecCeee
Q psy14086        290 VYKNGVRT  297 (324)
Q Consensus       290 ~~~~g~~~  297 (324)
                       |-+|+-+
T Consensus        75 -Fi~g~~I   81 (109)
T d1wika_          75 -YVRGDLV   81 (109)
T ss_dssp             -ECSSSEE
T ss_pred             -EECCEEE
Confidence             4466543

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.37  E-value=0.023  Score=38.21  Aligned_cols=77  Identities=14%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             hHHHHhcCCCEEEEEeC-----CCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchh----hhhhCCccccceEEEE
Q psy14086         90 SFEKYVSLGNHFVKFYA-----PWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRS----ICQSFDIKSYPTLLWI  160 (324)
Q Consensus        90 ~f~~~~~~~~~~v~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~  160 (324)
                      ..+.++++.+++| |..     |.|++|......|.++        .+.+..+|.+.+..    +.+..+.+.+|.+++ 
T Consensus         7 ~i~~~i~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi-   76 (109)
T d1wika_           7 GLKVLTNKASVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV-   76 (109)
T ss_dssp             CHHHHHTTSSEEE-EESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC-
T ss_pred             HHHHHHhcCCEEE-EeCCCCCCCCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE-
Confidence            4566666666555 654     8899999988877643        35556666665543    334456778997774 


Q ss_pred             eCCeEeeeecCCCCHHHHHHHHH
Q psy14086        161 ESGKKLDKFQGSRTLETLVNYVS  183 (324)
Q Consensus       161 ~~g~~~~~~~g~~~~~~i~~fi~  183 (324)
                       +|+.    .|.  .+++.+..+
T Consensus        77 -~g~~----IGG--~ddl~~l~~   92 (109)
T d1wika_          77 -RGDL----VGG--LDIVKELKD   92 (109)
T ss_dssp             -SSSE----EEC--HHHHHHHHH
T ss_pred             -CCEE----EcC--HHHHHHHHH
Confidence             4543    343  345555444

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=94.24  E-value=0.15  Score=38.72  Aligned_cols=95  Identities=13%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             ccccccCCcEEEEEe-CCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC--------------------------c
Q psy14086        219 FNDVIKSGTVFIKFF-APWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ--------------------------E  271 (324)
Q Consensus       219 ~~~~~~~~~~~v~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~--------------------------~  271 (324)
                      +.+.+.++.++++|| +.||+.|......+.+...++...  ++.+.-+.++.                          +
T Consensus        24 l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~--~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD  101 (219)
T d1xcca_          24 LYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD  101 (219)
T ss_dssp             HHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEEC
T ss_pred             eHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc--ceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccc
Confidence            445556678888998 788999999999999888665444  56666666653                          1


Q ss_pred             cchhhhhhcCCC--------c--c--ceEEEE-ecCeeee--eecC--CCCHHHHHHHHHh
Q psy14086        272 LSKDLCNQEGVD--------G--F--PSIYVY-KNGVRTA--EYNG--SRDLEELYQFILK  315 (324)
Q Consensus       272 ~~~~~~~~~~i~--------~--~--P~l~~~-~~g~~~~--~~~g--~~~~~~l~~fi~~  315 (324)
                      ....+++.||+-        +  +  -++++. ++|....  .|.-  .++.+++.+.|+.
T Consensus       102 ~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~a  162 (219)
T d1xcca_         102 ESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKS  162 (219)
T ss_dssp             TTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHH
Confidence            123677788872        1  2  244455 4565422  2322  3688999998865

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=91.65  E-value=0.38  Score=34.46  Aligned_cols=43  Identities=14%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             cCCcEEEEEeCC-CChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCC
Q psy14086        224 KSGTVFIKFFAP-WCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQ  270 (324)
Q Consensus       224 ~~~~~~v~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~  270 (324)
                      .++++++.||.. ||+.|....+.|++...+ +.   ++.++.+..+.
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~-~~---~~~vi~iS~d~   84 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAK-LS---NTIVLCISADL   84 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHH-ST---TEEEEEEESSC
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHH-hc---cceEEeecCCc
Confidence            456788888855 677799999999887755 43   35666666554

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=90.40  E-value=1.4  Score=28.49  Aligned_cols=83  Identities=13%  Similarity=0.230  Sum_probs=61.5

Q ss_pred             EEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHH
Q psy14086        101 FVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVN  180 (324)
Q Consensus       101 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~  180 (324)
                      +..|.+.. +........++.+-+.+.....+.+-.+|+.+++.+++.++|-+.|+++=..+. +..++.|..-...+..
T Consensus        15 L~LfV~g~-p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~-P~q~l~Gs~i~~ql~~   92 (105)
T d1t4za_          15 LQLFVDTR-PLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG-SRQVLSGIDLTDQLAN   92 (105)
T ss_dssp             EEEEECSC-HHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS-CCEEEESSCHHHHHHH
T ss_pred             EEEEEcCC-cchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC-cceeecChhHHHHHhh
Confidence            55555554 556655556666666654433588999999999999999999999999866554 4456889877888888


Q ss_pred             HHHhh
Q psy14086        181 YVSKM  185 (324)
Q Consensus       181 fi~~~  185 (324)
                      |.-+-
T Consensus        93 w~prw   97 (105)
T d1t4za_          93 QLPQW   97 (105)
T ss_dssp             HHHHH
T ss_pred             hhhHh
Confidence            87654

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.41  E-value=1.5  Score=28.40  Aligned_cols=78  Identities=13%  Similarity=0.055  Sum_probs=55.6

Q ss_pred             CCCEEEEEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeE-eeeecCCCCH
Q psy14086         97 LGNHFVKFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKK-LDKFQGSRTL  175 (324)
Q Consensus        97 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~  175 (324)
                      .+++.+..+...|..|..+...+++++..-.   ++.+..-+.          +....|++.+..+|+. -.+|.|-..-
T Consensus        18 ~~~V~l~~~~~~~~~s~el~~~l~eva~lSd---kI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI~F~GiP~G   84 (102)
T d1hyua3          18 TKPVELIATLDDSAKSAEIKELLAEIAELSD---KVTFKEDNT----------LPVRKPSFLITNPGSQQGPRFAGSPLG   84 (102)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTCT---TEEEEECTT----------SSSCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             CCCEEEEEEeCCChhHHHHHHHHHHHHhhCC---CeEEEEcCC----------CCCCCCeEEEecCCCEeeeEEecCCCc
Confidence            3466566677789999999888899887632   677764322          2234699988877654 3578898888


Q ss_pred             HHHHHHHHhhhC
Q psy14086        176 ETLVNYVSKMKG  187 (324)
Q Consensus       176 ~~i~~fi~~~~~  187 (324)
                      .++..||...+.
T Consensus        85 hEF~Slilail~   96 (102)
T d1hyua3          85 HEFTSLVLALLW   96 (102)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             ccHHHHHHHHHh
Confidence            888888887664

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=1.4  Score=26.63  Aligned_cols=72  Identities=15%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             EEeCCCCHhHhhHHHHHHHHHHhcCCCCCeEEEEeccccchhhhhhCCccccceEEEEeCCeEeeeecCCCCHHHHHHHH
Q psy14086        103 KFYAPWCGHCQSLAPVWQELASHFKTEEDVSIAKIDCTQHRSICQSFDIKSYPTLLWIESGKKLDKFQGSRTLETLVNYV  182 (324)
Q Consensus       103 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~i~~fi  182 (324)
                      .|..+.|+.|.+..-.+....-.      +.+..++.+....+.+..+...+|++.. .+|...      .....|.+|+
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi~------~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~~i------~eS~~I~~yL   69 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNIP------VELHVLLNDDAETPTRMVGQKQVPILQK-DDSRYM------PESMDIVHYV   69 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTCC------CEEEECCTTTTHHHHHHHSSSCCCEEEE-TTTEEE------ECHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCCC------cccccccccchHHHHHhCCCCceEEEEE-cCCCEE------ecHHHHHHHH
Confidence            47788999998877666554433      3344444444455666667778996653 345433      2567899999


Q ss_pred             HhhhC
Q psy14086        183 SKMKG  187 (324)
Q Consensus       183 ~~~~~  187 (324)
                      .+..+
T Consensus        70 d~~~G   74 (75)
T d1g7oa2          70 DKLDG   74 (75)
T ss_dssp             HHHTT
T ss_pred             HHhhC
Confidence            87644

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.63  E-value=1.9  Score=27.87  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=53.6

Q ss_pred             CcEEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCee-eeeecCCC
Q psy14086        226 GTVFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVR-TAEYNGSR  304 (324)
Q Consensus       226 ~~~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~-~~~~~g~~  304 (324)
                      +++-+..+...|..|..+...++++| . ...  ++.+..-+            .+....|++.+.++|+. -.+|.|--
T Consensus        19 ~~V~l~~~~~~~~~s~el~~~l~eva-~-lSd--kI~~~~~~------------~~~~r~Ps~~i~~~g~~~gI~F~GiP   82 (102)
T d1hyua3          19 KPVELIATLDDSAKSAEIKELLAEIA-E-LSD--KVTFKEDN------------TLPVRKPSFLITNPGSQQGPRFAGSP   82 (102)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHHHH-T-TCT--TEEEEECT------------TSSSCSSEEEEECTTCCCSCEEESCC
T ss_pred             CCEEEEEEeCCChhHHHHHHHHHHHH-h-hCC--CeEEEEcC------------CCCCCCCeEEEecCCCEeeeEEecCC
Confidence            46666667778999999999999998 4 333  56664311            11224699988877754 24688876


Q ss_pred             CHHHHHHHHHhhccc
Q psy14086        305 DLEELYQFILKHKVE  319 (324)
Q Consensus       305 ~~~~l~~fi~~~~~~  319 (324)
                      .--++..||...++.
T Consensus        83 ~GhEF~Slilail~v   97 (102)
T d1hyua3          83 LGHEFTSLVLALLWT   97 (102)
T ss_dssp             CGGGHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhc
Confidence            777888888776653

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=2.8  Score=25.11  Aligned_cols=72  Identities=7%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             EEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEEEEecCeeeeeecCCCCHHHHH
Q psy14086        231 KFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIYVYKNGVRTAEYNGSRDLEELY  310 (324)
Q Consensus       231 ~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~~~~~g~~~~~~~g~~~~~~l~  310 (324)
                      .|..+.|+.|..++-.+....-       .+....++.+.  .+.+.+..+...+|+++. .+|..+  +    +...|.
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi-------~~e~~~~~~~~--~~~~~~~~p~~~VP~L~~-~dg~~i--~----eS~~I~   66 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI-------PVELHVLLNDD--AETPTRMVGQKQVPILQK-DDSRYM--P----ESMDIV   66 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC-------CCEEEECCTTT--THHHHHHHSSSCCCEEEE-TTTEEE--E----CHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC-------Ccccccccccc--hHHHHHhCCCCceEEEEE-cCCCEE--e----cHHHHH
Confidence            3667889999888765555431       23343344343  455556666778998843 455332  2    367888


Q ss_pred             HHHHhhcc
Q psy14086        311 QFILKHKV  318 (324)
Q Consensus       311 ~fi~~~~~  318 (324)
                      +||++..+
T Consensus        67 ~yLd~~~G   74 (75)
T d1g7oa2          67 HYVDKLDG   74 (75)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhC
Confidence            99887643

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=82.27  E-value=0.67  Score=29.22  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=46.1

Q ss_pred             EEEEEeCCCChhhhhhhHhHHHHHHHhhcCCCCeEEEEEecCCccchhhhhhcCCCccceEE
Q psy14086        228 VFIKFFAPWCGHCKRLAPTWEELGTKLLDNKHGIVIAKVDCTQELSKDLCNQEGVDGFPSIY  289 (324)
Q Consensus       228 ~~v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P~l~  289 (324)
                      ++-.|.+...+.+......+.++..++...  .+..-.+|...  ++++++.++|-..||++
T Consensus         3 ~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~--~y~LeVIDv~~--qP~lAe~~~IvATPtLv   60 (90)
T d1r5pa_           3 VLKLYVAGNTPNSVRALKTLKNILEQEFQG--IYALKVIDVLK--NPQLAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHHHHHHTT--SEEEEEEETTT--SCSCCTTCCEECHHHHG
T ss_pred             EEEEEEcCCChhHHHHHHHHHHHHHHhcCC--cEEEEEEEccc--CHhHHhhCCEEeehHHH
Confidence            345577777777777777788877666655  68888999999  89999999999999973