Psyllid ID: psy14244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcccccccccccccccEccccccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEcccccHHHHHHcHccccHHHEHEEEccccccccccccccccEccccHHHHHHHHcccccccEccccccEcccccccEcccccccEccccHHHHHHHHcccccccEcccccccEcccc
Coil and Loop (DISEMBL)
mftqtpnlvlFSQQTLLCihgndnaykchqcqrLIFLsanagvhkceycHKVFdqqssllshncpqmkprpykcdtceksftnsqnlnthqlihsgirpfkcttcdksfvnqinptsthtptytksnlaqhscmnshfpkpyqcdrcsqffgdrmnlishqcgpedikpnvdnlqtqisNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS
Flexible Loop (DISEMBL)
mftqtpnlvLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS
Low Complexity Region (SEG)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqS
Disordered region (IsUnstruct)
******NLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNC******PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT*****TYT**NLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC****************************************************************
Disordered Region (DISOPRED)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ************
Disordered Region (DISEMBL)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDE*******************************************
Disordered Region (DISPRO)
****TPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q8N823	705	Zinc finger protein 611 O	yes	N/A	0.592	0.190	0.347	4e-20
Q86V71	674	Zinc finger protein 429 O	no	N/A	0.597	0.200	0.323	4e-19
P17038	809	Zinc finger protein 43 OS	no	N/A	0.628	0.175	0.327	4e-19
Q9HCG1	818	Zinc finger protein 160 O	no	N/A	0.663	0.183	0.324	7e-19
Q8TF32	576	Zinc finger protein 431 O	no	N/A	0.628	0.246	0.321	3e-18
Q68DY1	528	Zinc finger protein 626 O	no	N/A	0.623	0.267	0.331	3e-18
Q03923	595	Zinc finger protein 85 OS	no	N/A	0.623	0.236	0.323	3e-18
Q09FC8	603	Zinc finger protein 415 O	no	N/A	0.628	0.235	0.339	3e-18
A8MTY0	619	Putative zinc finger prot	no	N/A	0.681	0.248	0.315	4e-18
Q3MIS6	628	Zinc finger protein 528 O	no	N/A	0.663	0.238	0.340	4e-18

>sp|Q8N823|ZN611_HUMAN Zinc finger protein 611 OS=Homo sapiens GN=ZNF611 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 27/161 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCH 584

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q86V71|ZN429_HUMAN Zinc finger protein 429 OS=Homo sapiens GN=ZNF429 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 35/170 (20%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCHKVFDQQSSLLSHNCPQMK 68
           IH  +  YKC +C +   LS+    HK          CE C K F++ S L  H      
Sbjct: 502 IHSGEKPYKCEECGKAFILSSRLTQHKKIHTGEKPYKCEECGKAFNRSSRLTQHKKIHTG 561

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
            +PYKC  C+K+FT+S NL++H+ IHSG +P+KC  C K+F                S L
Sbjct: 562 EKPYKCKQCDKAFTHSSNLSSHKKIHSGEKPYKCEECGKAFNRS-------------SRL 608

Query: 129 AQHSCMNSHFPKPYQCDRCSQFFGD-----------RMNLISHQCGPEDI 167
            QH  +++   KPY+C+ C++ F             RM +++H C P  +
Sbjct: 609 TQHKKIHTR-EKPYKCEECAKAFTRSSRLTQHKKIHRMGVVAHACNPSTL 657

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P17038|ZNF43_HUMAN Zinc finger protein 43 OS=Homo sapiens GN=ZNF43 PE=2 SV=4

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 29/171 (16%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCH 50
            FTQ+ NL    +     IH  +  YKC +C +    S+N   H          KCE C 
Sbjct: 574 AFTQSSNLTTHKK-----IHTGEKFYKCEECGKAFTQSSNLTTHKKIHTGGKPYKCEECG 628

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F+Q S+L  H     + +PYKC+ C K+F  S  L  H++IH+G +P+KC  C K+F 
Sbjct: 629 KAFNQFSTLTKHKIIHTEEKPYKCEECGKAFKWSSTLTKHKIIHTGEKPYKCEECGKAFK 688

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                          S L+ H  +++   KPY+C++C + F    NLI H+
Sbjct: 689 -------------LSSTLSTHKIIHTG-EKPYKCEKCGKAFNRSSNLIEHK 725

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9HCG1|ZN160_HUMAN Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 29/179 (16%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCH 50
           +FTQ  +L+   +     IH  +  YKC++C +   + ++  +H          KC  C 
Sbjct: 377 LFTQNSHLISHWR-----IHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECG 431

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           KVF   S L  H       +PYKC+ C K+F+   NL THQ+IH+G +PFKC  C K F 
Sbjct: 432 KVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFT 491

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP 169
                          S LA H  +++   KPY+C+ C + F  R +L +HQ      KP
Sbjct: 492 QN-------------SQLANHRRIHT-GEKPYKCNECGKAFSVRSSLTTHQAIHSGEKP 536

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8TF32|ZN431_HUMAN Zinc finger protein 431 OS=Homo sapiens GN=ZNF431 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 26/168 (15%)

Query: 19  IHGNDNAYKCHQCQ----RLIFLSANAGVH------KCEYCHKVFDQQSSLLSHNCPQMK 68
           IH  +  YKC +C     R  +L+ +  +H      KCE C K F+  S+L  H      
Sbjct: 337 IHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTG 396

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN- 127
            +PYKC+ C K+F  S NL TH++IH+G +P+KC  C K+F N+    + H   +T    
Sbjct: 397 EKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAF-NRSPQLTAHKIIHTGEKP 455

Query: 128 ---------LAQHSCMNSH-----FPKPYQCDRCSQFFGDRMNLISHQ 161
                     +Q S + +H       KPY+C+ C + F    NL  H+
Sbjct: 456 YKCEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNLTKHK 503

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q68DY1|ZN626_HUMAN Zinc finger protein 626 OS=Homo sapiens GN=ZNF626 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 28/169 (16%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCHKVFDQQSSLLSHNCPQMK 68
           IH  D  YKC +C +    S+    HK          CE C K F + S L +H      
Sbjct: 334 IHTEDKPYKCEECGKAFKYSSTLTTHKRIHTGEKPYKCEECGKAFKRSSDLTTHKIIHTG 393

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT---- 124
            +PYKC+ C K+F  S NL TH+ IH+G RP+KC  C K+F NQ +  +TH   +T    
Sbjct: 394 EKPYKCEECGKAFKYSSNLTTHKKIHTGERPYKCEECGKAF-NQSSILTTHRRIHTGEKF 452

Query: 125 ------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                        SNL  H  +++   +PY+C+ C + F     L +H+
Sbjct: 453 YKCEECGKAFKCSSNLTTHKKIHTG-ERPYKCEECGKAFNQSSILTTHE 500

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q03923|ZNF85_HUMAN Zinc finger protein 85 OS=Homo sapiens GN=ZNF85 PE=2 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 29/170 (17%)

Query: 2   FTQTPNLVLFSQQTLLCIHGNDNAYKCHQC----QRLIFLSANAGVH------KCEYCHK 51
           F Q+ NL+   +     IH  +  YKC +C     R   L+ +  +H      KC+ C K
Sbjct: 239 FNQSSNLIKHKK-----IHTGEKPYKCEECGKTFNRFSTLTTHKIIHTGEKPYKCKECGK 293

Query: 52  VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
            F++ S+L +H       +PYKC+ C K+F  S NL TH++IH+G +P+KC  C K+F N
Sbjct: 294 AFNRSSTLTTHRKIHTGEKPYKCEECGKAFKQSSNLTTHKIIHTGEKPYKCKKCGKAF-N 352

Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
           Q    +TH   +T               KPY+C++C + F    +L +H+
Sbjct: 353 QSAHLTTHEVIHTGE-------------KPYKCEKCGKAFNHFSHLTTHK 389

May be a transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q09FC8|ZN415_HUMAN Zinc finger protein 415 OS=Homo sapiens GN=ZNF415 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 29/171 (16%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCH 50
           +F+QT +L    +     IH  +  YKC++C ++   +++   H          KC  C 
Sbjct: 412 VFSQTSSLATHQR-----IHTGEKPYKCNECGKVFSQTSSLARHWRIHTGEKPYKCNECG 466

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           KVF   S L SH       +PYKC+ C K+F+   NL THQ+IH+G +P+KC  C K F 
Sbjct: 467 KVFSYNSHLASHRRVHTGEKPYKCNECGKAFSVHSNLTTHQVIHTGEKPYKCNQCGKGF- 525

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                 S H      S+L  H  +++   KPY+C+ C + F  R NL  HQ
Sbjct: 526 ------SVH------SSLTTHQVIHT-GEKPYKCNECGKSFSVRPNLTRHQ 563

Involved in transcriptional regulation. Transcriptional activity differed among the various isoforms. All isoforms except isoform 3 seem to suppresses the transcriptional activities of AP-1 and p53/TP53.

Homo sapiens (taxid: 9606)

>sp|A8MTY0|ZN724_HUMAN Putative zinc finger protein 724 OS=Homo sapiens GN=ZNF724P PE=5 SV=3

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 33/187 (17%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCH 50
            F Q+ NL    +     IH  D  YKC +C +   +S+    HK          CE C 
Sbjct: 318 AFNQSSNLTKHKR-----IHTGDKPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECG 372

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F+  S+L  H       +PYKC+ C K+F  S +L TH+ IH+G +P+KC  C K+F 
Sbjct: 373 KAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNTSSHLTTHKRIHTGEKPYKCEECGKAF- 431

Query: 111 NQINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
           NQ +  +TH   +T                 SNL +H  +++   KPY+C+ C + F   
Sbjct: 432 NQFSQLTTHKIIHTGEKPYKCKECGKAFKRSSNLTEHRIIHT-GEKPYKCEECGKAFNLS 490

Query: 155 MNLISHQ 161
            +L +H+
Sbjct: 491 SHLTTHK 497

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q3MIS6|ZN528_HUMAN Zinc finger protein 528 OS=Homo sapiens GN=ZNF528 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 82/176 (46%), Gaps = 26/176 (14%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
           IH  DN YKC +C ++   S+   +H          KC  C K+F   S+L  H      
Sbjct: 206 IHNADNPYKCSECGKVFSCSSKLVIHRRMHTGEKPYKCHECGKLFSSNSNLSQHQRIHTG 265

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN- 127
            +PYKC  C+K F +S  L  HQ IH+G +P+KC  CDK F NQI     H   +T    
Sbjct: 266 EKPYKCHECDKVFRSSSKLAQHQRIHTGEKPYKCHECDKVF-NQIAHLVRHQKIHTGEKP 324

Query: 128 ---------LAQHSCMNSH-----FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP 169
                     ++HS +  H       KPY+C+ C + F  R +LI+HQ      KP
Sbjct: 325 YSCNKCGKVFSRHSYLAEHQTVHTGEKPYKCEECGKAFSVRSSLITHQLIHTGRKP 380

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
358417009	1448	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.676	0.105	0.322	2e-19
327281828	876	PREDICTED: zinc finger protein 268-like	0.721	0.186	0.360	1e-18
410054428	813	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.592	0.164	0.347	2e-18
21757193	705	unnamed protein product [Homo sapiens]	0.592	0.190	0.347	2e-18
239787080	705	zinc finger protein 611 isoform a [Homo	0.592	0.190	0.347	2e-18
426244178	1003	PREDICTED: zinc finger protein 845-like	0.676	0.152	0.322	2e-18
328707452	482	PREDICTED: zinc finger protein 79-like [	0.641	0.300	0.344	3e-18
239787086	636	zinc finger protein 611 isoform b [Homo	0.597	0.212	0.345	3e-18
395751691	908	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.597	0.148	0.345	3e-18
50949560	598	hypothetical protein [Homo sapiens]	0.597	0.225	0.345	4e-18

>gi|358417009|ref|XP_002702020.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 91, partial [Bos taurus]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 33/186 (17%)

Query: 2   FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHK 51
           F++T NL +  +     +H  +  YKC  C +   +S+N  VH          KC+ C K
Sbjct: 755 FSRTGNLTVHRR-----VHTGEKPYKCDMCGKAFRVSSNLAVHQRVHTGEKPYKCDVCGK 809

Query: 52  VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
            F Q + L  H       +PYKCD C K+F ++  L  HQ IH+G +P+KC  CDK+F++
Sbjct: 810 AFSQATGLAVHQRIHTGEKPYKCDVCGKAFNHTTRLQLHQRIHTGEKPYKCNVCDKAFIS 869

Query: 112 QINPTSTHTPTYTK----------------SNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
             N  S H   +T                 SNL  H  +++   KPY+CD C + F    
Sbjct: 870 AAN-LSVHRKLHTGEKPYKCDICGKGFRVSSNLGIHRSVHTG-EKPYKCDVCGKAFSHTG 927

Query: 156 NLISHQ 161
           NL  H+
Sbjct: 928 NLAVHR 933

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327281828|ref|XP_003225647.1| PREDICTED: zinc finger protein 268-like [Anolis carolinensis]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 31/194 (15%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQR-------LIFLSA-NAGV--HKCEYCH 50
           +FT   NL+  S Q    IH     +KC QC++       LI+  A + GV   KC  C 
Sbjct: 350 IFTHKRNLI--SHQA---IHTGVKQFKCLQCEKSFSRKGHLIYHQATHTGVKPFKCMQCE 404

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F ++ SL+SH       +P+KC  CEKSF+  +NL +HQ  H+G++PFKC  C+KSF 
Sbjct: 405 KSFSEKRSLISHQRTHTGEKPFKCMQCEKSFSEKRNLISHQATHTGVKPFKCMQCEKSFS 464

Query: 111 ---NQINPTSTHTPT------------YTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
              N I+  +THT                K NL  H   ++   KP++C +C + F ++ 
Sbjct: 465 EKRNLISHQATHTGVKPFKCMQCEKSFSEKRNLISHQATHTGV-KPFKCMQCEKSFSEKR 523

Query: 156 NLISHQCGPEDIKP 169
           NLISHQ     +KP
Sbjct: 524 NLISHQATHTGVKP 537

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410054428|ref|XP_003316675.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 611 [Pan troglodytes]

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 27/161 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKISHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCH 584

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|21757193|dbj|BAC05052.1| unnamed protein product [Homo sapiens]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 27/161 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCH 584

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|239787080|ref|NP_112234.3| zinc finger protein 611 isoform a [Homo sapiens] gi|239787082|ref|NP_001154971.1| zinc finger protein 611 isoform a [Homo sapiens] gi|239787084|ref|NP_001154972.1| zinc finger protein 611 isoform a [Homo sapiens] gi|269849530|sp|Q8N823.2|ZN611_HUMAN RecName: Full=Zinc finger protein 611 gi|119592500|gb|EAW72094.1| zinc finger protein 611, isoform CRA_b [Homo sapiens]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 27/161 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCH 584

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426244178|ref|XP_004015904.1| PREDICTED: zinc finger protein 845-like [Ovis aries]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 86/186 (46%), Gaps = 33/186 (17%)

Query: 2   FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHK 51
           F++T NL +  +     +H  +  YKC  C +   +S+N  VH          KC+ C K
Sbjct: 585 FSRTGNLAVHRR-----VHTGEKPYKCDTCGKAFRVSSNLAVHRRVHTGEKPYKCDVCGK 639

Query: 52  VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
            F Q + L  H       +PYKCD C K+F ++  L  HQ IH+G +P+KC  CDK F +
Sbjct: 640 AFSQAAGLAVHQRIHTGDKPYKCDVCGKAFNHTTRLQLHQRIHTGEKPYKCNVCDKVFSH 699

Query: 112 QINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
             N T  H   +T                 SNL  H  +++   KPY+CD C + F    
Sbjct: 700 TANLT-VHRRVHTGEKPYKCDVCGKAFRVSSNLTVHRIVHTG-EKPYKCDVCGKAFSHTG 757

Query: 156 NLISHQ 161
           NL  H+
Sbjct: 758 NLAVHR 763

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328707452|ref|XP_003243400.1| PREDICTED: zinc finger protein 79-like [Acyrthosiphon pisum]

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 29/174 (16%)

Query: 11  FSQQTLL----CIHGNDNAYKCHQCQR-------LI--FLSANAGV--HKCEYCHKVFDQ 55
           FSQ+T L     IH  + +YKC  C         LI   +  + GV  +KC+ C++ F Q
Sbjct: 268 FSQKTALKSHITIHTGEKSYKCAICDTGFARKPYLISHIIRKHNGVKPYKCDICNQSFPQ 327

Query: 56  QSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINP 115
           +  L SH       +PYKCD C+K   +  NL TH   H+G++PFKC  CDK FV+    
Sbjct: 328 KGDLTSHTRTHTGLKPYKCDICDKGLGSISNLITHTRTHTGVKPFKCDICDKGFVSS--- 384

Query: 116 TSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP 169
                     S+L +H+ +++   KPY+CD C ++FG   +L  H      +KP
Sbjct: 385 ----------SDLTKHTRIHTGV-KPYKCDTCDKWFGSSGDLRRHTKIHTGVKP 427

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239787086|ref|NP_001154973.1| zinc finger protein 611 isoform b [Homo sapiens] gi|119592499|gb|EAW72093.1| zinc finger protein 611, isoform CRA_a [Homo sapiens] gi|193787141|dbj|BAG52347.1| unnamed protein product [Homo sapiens] gi|223459598|gb|AAI36344.1| ZNF611 protein [Homo sapiens]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 369 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 428

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 429 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 479

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H 
Sbjct: 480 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 516

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395751691|ref|XP_002829724.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 611 isoform 1 [Pongo abelii]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 421 KSSLVCHHRLHGGEKSYKCKVCDKAFVRSSQLAKHTRIHCGEKPYKCNECGKTFGQNSDL 480

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+    L TH++ H+G +P+KC  CDK+F          
Sbjct: 481 LIHKSVHTGEQPYKCDECEKVFSRKSTLETHKISHTGEKPYKCKVCDKAFA--------- 531

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H+
Sbjct: 532 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHR 568

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50949560|emb|CAH10596.1| hypothetical protein [Homo sapiens]

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 331 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 390

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 391 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 441

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H 
Sbjct: 442 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 478

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
UNIPROTKB|F1M3L0	375	LOC100365021 "Protein LOC10036	0.632	0.381	0.353	5.5e-22
UNIPROTKB|F1M3T5	454	LOC100365021 "Protein LOC10036	0.632	0.314	0.353	1.7e-21
UNIPROTKB|F1LV11	351	LOC100365021 "Protein LOC10036	0.570	0.367	0.352	1.9e-21
UNIPROTKB|F1LT28	545	LOC100365021 "Protein LOC10036	0.632	0.262	0.353	3.2e-21
RGD|2319849	624	LOC100365021 "rCG64132-like" [	0.632	0.229	0.353	4.6e-21
UNIPROTKB|Q8N823	705	ZNF611 "Zinc finger protein 61	0.601	0.192	0.359	5.9e-21
UNIPROTKB|Q6ZNA1	936	ZNF836 "Zinc finger protein 83	0.676	0.163	0.338	9.7e-21
UNIPROTKB|A5D7K3	464	ZFP2 "Uncharacterized protein"	0.610	0.297	0.383	3.2e-20
UNIPROTKB|F1MQS9	842	LOC100847180 "Uncharacterized	0.690	0.185	0.335	3.6e-20
UNIPROTKB|F1MX34	1053	F1MX34 "Uncharacterized protei	0.676	0.145	0.322	4e-20

UNIPROTKB|F1M3L0 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/167 (35%), Positives = 81/167 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   142 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 201

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   202 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 261

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISHQ 161
               S       Q S ++SH       KP++C  C + FG + +L SHQ
Sbjct:   262 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSHQ 308

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1M3T5 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 59/167 (35%), Positives = 81/167 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   195 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 254

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   255 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 314

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISHQ 161
               S       Q S ++SH       KP++C  C + FG + +L SHQ
Sbjct:   315 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSHQ 361

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LV11 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 54/153 (35%), Positives = 74/153 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   193 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 252

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+     H   +T    
Sbjct:   253 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVR-LRIHQRIHTGD-- 309

Query:   129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                        KPY+C  C + FG + +L SHQ
Sbjct:   310 -----------KPYKCSECDKCFGQKSHLSSHQ 331

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LT28 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 59/167 (35%), Positives = 81/167 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   277 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 336

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   337 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 396

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISHQ 161
               S       Q S ++SH       KP++C  C + FG + +L SHQ
Sbjct:   397 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSHQ 443

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|2319849 LOC100365021 "rCG64132-like" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 4.6e-21, P = 4.6e-21
 Identities = 59/167 (35%), Positives = 81/167 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   223 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 282

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   283 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 342

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISHQ 161
               S       Q S ++SH       KP++C  C + FG + +L SHQ
Sbjct:   343 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSHQ 389

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8N823 ZNF611 "Zinc finger protein 611" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 59/164 (35%), Positives = 85/164 (51%)

Query:    11 FSQQT-LLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQ 56
             FS ++ L+C   +HG + +YKC  C +    S+    H          KC  C K F Q 
Sbjct:   435 FSHKSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQN 494

Query:    57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
             S LL H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F       
Sbjct:   495 SDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAF------- 547

Query:   117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
             + H      S LA+H+ ++S   KPY+C+ CS+ F  R  L+ H
Sbjct:   548 ACH------SYLAKHTRIHSG-EKPYKCNECSKTFSHRSYLVCH 584

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6ZNA1 ZNF836 "Zinc finger protein 836" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 63/186 (33%), Positives = 96/186 (51%)

Query:     2 FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLI----FLSANAGVH------KCEYCHK 51
             F+Q+ NL +  +     IH  +  YKC++C +       L+ +  +H      +C+ C K
Sbjct:   311 FSQSYNLAIHQR-----IHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGK 365

Query:    52 VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
             VF Q S+L++H       +PYKC+ C KSF+ S NL THQ +HSG +P+KC  C K+F  
Sbjct:   366 VFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKR 425

Query:   112 QINPTS---THT--PTYT----------KSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRM 155
               + T+    HT    YT          +S LA+H    SH   KPY+C+ C + F    
Sbjct:   426 SSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQ--RSHTGEKPYKCNECGKVFSQTS 483

Query:   156 NLISHQ 161
             +L+ H+
Sbjct:   484 HLVGHR 489

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A5D7K3 ZFP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 61/159 (38%), Positives = 79/159 (49%)

Query:    20 HGNDNAYKCH--QCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTC 77
             HG D        + QR IF  A   V++C  C K F Q SSLL H       +PYKC+ C
Sbjct:    82 HGKDTKQNAELIKTQR-IF--AGEKVYECNECGKTFSQSSSLLKHQRIHTGEKPYKCNVC 138

Query:    78 EKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT---STHT---PTYTK------ 125
             EK F    +L  HQ IH+G +P+KC  C K+F   +N T    THT   P   K      
Sbjct:   139 EKHFIERSSLTVHQRIHTGEKPYKCNECGKTFSQSMNLTVHQRTHTGEKPYQCKECGKAF 198

Query:   126 ---SNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                S+L QH  +++   KPY+C+ C + F   MNL  HQ
Sbjct:   199 RKNSSLIQHERIHTG-EKPYKCNECGKAFTQSMNLTVHQ 236

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MQS9 LOC100847180 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 3.6e-20, P = 3.6e-20
 Identities = 62/185 (33%), Positives = 89/185 (48%)

Query:    10 LFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCHKVFDQQSSL 59
             L S QT   +H  +  YKC +C ++   S+    HK          C+ C KVF + S+L
Sbjct:   357 LLSHQT---VHTGEKPYKCDECGKVFTHSSQLRRHKKIHTGKKLFKCDICDKVFSKNSNL 413

Query:    60 LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PT 116
               H       +PYKCD C K+F    NL  HQ +H+G +P+KC  C K+F +  +     
Sbjct:   414 AGHQTVHTGEKPYKCDECGKAFRVKSNLLQHQTVHTGEKPYKCDECGKAFSHSSHLRRHK 473

Query:   117 STHT-----------PTYTK-SNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGP 164
               HT             ++K SNLA H  +++   KPY+CD C + F  + NL+SHQ   
Sbjct:   474 KIHTGKKLFKCDICDKVFSKNSNLAGHQTVHTG-EKPYKCDECGKAFRVKSNLLSHQTVH 532

Query:   165 EDIKP 169
                KP
Sbjct:   533 TGEKP 537

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MX34 F1MX34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 60/186 (32%), Positives = 88/186 (47%)

Query:     2 FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHK 51
             F++T NL +  +     +H  +  YKC  C +   +S+N  VH          KC+ C K
Sbjct:   743 FSRTGNLTVHRR-----VHTGEKPYKCDMCGKAFRVSSNLAVHQRVHTGEKPYKCDVCGK 797

Query:    52 VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
              F Q + L  H       +PYKCD C K+F ++  L  HQ IH+G +P+KC  CDK+F++
Sbjct:   798 AFSQATGLAVHQRIHTGEKPYKCDVCGKAFNHTTRLQLHQRIHTGEKPYKCNVCDKAFIS 857

Query:   112 QINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
               N  S H   +T                 SNL  H  +++   KPY+CD C + F    
Sbjct:   858 AAN-LSVHRKLHTGEKPYKCDICGKGFRVSSNLGIHRSVHTG-EKPYKCDVCGKAFSHTG 915

Query:   156 NLISHQ 161
             NL  H+
Sbjct:   916 NLAVHR 921

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	6e-13
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	8e-13
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	8e-12
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-11
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	6e-11
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	9e-11
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	9e-11
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-10
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-10
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	7e-10
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-09
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-08
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-08
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-08
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-07
COG3064	387	COG3064, TolA, Membrane protein involved in colici	8e-07
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	4e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-06
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-05
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-05
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-05
PRK10920	390	PRK10920, PRK10920, putative uroporphyrinogen III	2e-05
pfam09766	352	pfam09766, FimP, Fms-interacting protein	2e-05
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	3e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-05
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	3e-05
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-05
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-05
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-05
pfam03938	157	pfam03938, OmpH, Outer membrane protein (OmpH-like	4e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-05
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	5e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	5e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	5e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	6e-05
COG3064	387	COG3064, TolA, Membrane protein involved in colici	8e-05
TIGR03789	239	TIGR03789, pdsO, proteobacterial sortase system Om	9e-05
PRK09506	830	PRK09506, mrcB, bifunctional glycosyl transferase/	9e-05
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	1e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	1e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-04
PLN03029	222	PLN03029, PLN03029, type-a response regulator prot	1e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	2e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	2e-04
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	2e-04
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	2e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	2e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	2e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-04
pfam03938	157	pfam03938, OmpH, Outer membrane protein (OmpH-like	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
pfam12118	261	pfam12118, SprA-related, SprA-related family	3e-04
pfam12118	261	pfam12118, SprA-related, SprA-related family	3e-04
pfam12118	261	pfam12118, SprA-related, SprA-related family	3e-04
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	3e-04
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	3e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-04
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	4e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
PLN03029	222	PLN03029, PLN03029, type-a response regulator prot	4e-04
PRK09010	177	PRK09010, PRK09010, single-stranded DNA-binding pr	4e-04
PLN03029	222	PLN03029, PLN03029, type-a response regulator prot	5e-04
pfam12118	261	pfam12118, SprA-related, SprA-related family	5e-04
pfam04888	303	pfam04888, SseC, Secretion system effector C (SseC	5e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	6e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	6e-04
pfam12118	261	pfam12118, SprA-related, SprA-related family	6e-04
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	6e-04
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	6e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	7e-04
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	7e-04
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	8e-04
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	8e-04
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	8e-04
TIGR03789	239	TIGR03789, pdsO, proteobacterial sortase system Om	9e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.001
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.001
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.001
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.001
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.001
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	0.001
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	0.001
TIGR03752	472	TIGR03752, conj_TIGR03752, integrating conjugative	0.001
PRK00286	438	PRK00286, xseA, exodeoxyribonuclease VII large sub	0.001
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.002
PRK10920	390	PRK10920, PRK10920, putative uroporphyrinogen III	0.002
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	0.002
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	0.002
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	0.002
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	0.002
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	0.002
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.002
pfam12118	261	pfam12118, SprA-related, SprA-related family	0.002
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	0.002
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	0.002
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	0.002
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	0.002
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	0.002
pfam12090	191	pfam12090, Spt20, Spt20 family	0.002
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	0.002
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
TIGR02302	851	TIGR02302, aProt_lowcomp, TIGR02302 family protein	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
PRK10920	390	PRK10920, PRK10920, putative uroporphyrinogen III	0.003
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.003
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	0.003
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	0.003
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	0.003
pfam12090	191	pfam12090, Spt20, Spt20 family	0.003
pfam12090	191	pfam12090, Spt20, Spt20 family	0.003
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.003
PRK05733	172	PRK05733, PRK05733, single-stranded DNA-binding pr	0.003
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	0.004
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.004
pfam04888	303	pfam04888, SseC, Secretion system effector C (SseC	0.004
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	0.004
COG5624	505	COG5624, TAF61, Transcription initiation factor TF	0.004
PRK05733	172	PRK05733, PRK05733, single-stranded DNA-binding pr	0.004
COG0845	372	COG0845, AcrA, Membrane-fusion protein [Cell envel	0.004
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.004

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 67.2 bits (165), Expect = 6e-13
 Identities = 22/45 (48%), Positives = 25/45 (55%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           D Q +   Q+ +QQ QQ Q  Q Q Q  QQ QQ Q QQQ QQ Q 
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQG 654

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 66.5 bits (163), Expect = 8e-13
 Identities = 22/52 (42%), Positives = 26/52 (50%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
             Q   N ++ + + QQ Q  Q Q Q  QQ QQ Q QQQ QQ Q  Q  Q S
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGS 661

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +  Q+Q   Q+ +QQ QQ Q  Q Q Q  QQ QQ Q Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ 646

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 18/46 (39%), Positives = 22/46 (47%)

Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
              +Q +    Q Q  QQ QQ Q QQQ QQ Q  Q  Q    ++QQ
Sbjct: 622 QQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQ 667

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 17/46 (36%), Positives = 19/46 (41%)

Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
               Q      Q  QQ QQ Q QQQ QQ Q  Q  Q    ++QQ  
Sbjct: 624 GQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQAL 669

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           Q  QQ QQ Q QQQ QQ Q  Q  Q    ++QQ  + 
Sbjct: 635 QPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
              QQ QQ Q QQQ QQ Q  Q  Q    ++QQ  + 
Sbjct: 635 QPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            QQ QQ Q QQQ QQ Q  Q  Q    ++QQ  + +
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDE 672

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
              Q Q      Q   + QQ Q QQQ QQ Q  Q  Q    ++QQ  + +  +Q
Sbjct: 623 QGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 189 MQQQQQ-------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +++QQ          Q+Q   Q+ +QQ QQ Q  Q Q Q  QQ 
Sbjct: 597 LREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQG 640

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           Q Q QQQ QQ Q  Q  Q    ++QQ  + +  +Q+ 
Sbjct: 642 QGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRG 678

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q QQQ QQ Q  Q  Q    ++QQ  + +  +Q+  
Sbjct: 644 QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 23/60 (38%)

Query: 189 MQQQQQQQQQQQQQQQ-----------------------QQQQQQQQQQQQQQQQQQQQQ 225
           +Q  Q  Q  Q + QQ                       Q+Q   Q+ +QQ QQ Q  Q 
Sbjct: 573 LQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQG 632

Length = 820

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 15/51 (29%), Positives = 33/51 (64%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q Q S    + + K ++QQQ ++ QQ+Q  +Q++ +Q ++++   Q+Q++Q
Sbjct: 69  QQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119

Length = 387

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 23/74 (31%)

Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQ----------------------QQQQQQQQQQQQQ 211
           LQ Q+  N +  +     Q + QQ                       Q+Q   Q+ +QQ 
Sbjct: 566 LQ-QMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQG 624

Query: 212 QQQQQQQQQQQQQQ 225
           QQ Q  Q Q Q  Q
Sbjct: 625 QQGQGGQGQGQPGQ 638

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           QQQ QQ Q  Q  Q    ++QQ  + +  +Q+    
Sbjct: 646 QQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLP 681

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           QQ QQ Q  Q  Q    ++QQ  + +  +Q+     
Sbjct: 647 QQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPG 682

Length = 820

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 10/41 (24%), Positives = 26/41 (63%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           Q K   +Q++ +Q ++++   Q+Q++Q ++  +Q   +Q+Q
Sbjct: 93  QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 9/41 (21%), Positives = 26/41 (63%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           +Q +   Q++ +Q ++++   Q+Q++Q ++  +Q   +Q+Q
Sbjct: 93  QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 9/43 (20%), Positives = 26/43 (60%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           EQ ++K  ++++   Q+Q++Q ++  +Q   +Q+Q ++   + 
Sbjct: 99  EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 13/45 (28%), Positives = 33/45 (73%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            EQ ++K  ++++ + Q+QQ+Q ++ ++Q Q +Q+QQ++Q ++ +
Sbjct: 98  AEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAA 142

Length = 387

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q QQ Q  Q  Q    ++QQ  + +  +Q+      
Sbjct: 648 QGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGM 683

Length = 820

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 27/44 (61%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            +QA+   Q+Q  +Q++ +Q ++++   Q+Q++Q ++  +Q   
Sbjct: 86  QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 9/45 (20%), Positives = 29/45 (64%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           +E  + +  +Q++ +Q ++++   Q+Q++Q ++  +Q   +Q+Q+
Sbjct: 90  EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 12/52 (23%), Positives = 32/52 (61%)

Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            Q Q  +     + + +++QQQ ++ QQ+Q  +Q++ +Q ++++   Q+Q++
Sbjct: 67  QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 14/53 (26%), Positives = 36/53 (67%)

Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           N Q Q   + ++A+ + ++++QQQ ++ QQ+Q  +Q++ +Q ++++   Q+Q+
Sbjct: 65  NRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK 117

Length = 387

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
            Q Q  Q  Q    ++QQ  + +  +Q+       
Sbjct: 650 QQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           D Q +  ++  ++  +   +   QQQ QQQ  Q QQQ +Q    
Sbjct: 719 DRQGR-ALEALREGARALGEAMAQQQGQQQGGQGQQQGRQGGNG 761

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
            +   +   QQQ QQQ  Q QQQ +Q    +
Sbjct: 732 ARALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762

Length = 820

>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 175 QTQISNNDE-QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q Q + ND    ++   Q+ Q+ Q+Q+ +   +QQ +   Q  +QQ    +Q
Sbjct: 63  QNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114

Length = 390

>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 32/55 (58%)

Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            NL  +I  ++E+AK   QQ++  +Q Q       ++++Q++Q++++   Q++  
Sbjct: 189 KNLTVEIIGDEEEAKAFEQQKESSEQSQDDDSDSDEEEEQKRQKKRRSTDQEKLD 243

This entry carries part of the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C-terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes. Length = 352

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 24/32 (75%)

Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
           K+++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q 
Sbjct: 10  KLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41

Length = 110

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 31/50 (62%)

Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            +I    + A  K Q++Q++ +QQ ++ ++Q+  +Q +Q++ +Q+   ++
Sbjct: 53  NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEK 102

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 12/37 (32%), Positives = 25/37 (67%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
           E   I M ++Q +  +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 127 ELVSIGMNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
           M+Q  +Q Q+  QQ  Q   Q    +  QQ  Q+
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQR 542

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           +++  +   +   QQQ QQQ  Q QQQ +Q    +
Sbjct: 728 LREGARALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
           Q G    +P     Q Q     +Q      Q  Q  Q    ++QQ  + +  +Q+     
Sbjct: 628 QGGQGQGQPGQQGQQGQGQQQGQQ-----GQGGQGGQGSLAERQQALRDELGRQRGGLPG 682

Query: 221 QQQQQ 225
              + 
Sbjct: 683 MGGEA 687

Length = 820

>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like)

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
           ++++     LQ Q +   E+A+   QQ+ QQ+QQ+ QQ+QQ  QQ+ QQ+QQ+  Q 
Sbjct: 56  KELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQP 112

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 8/51 (15%), Positives = 26/51 (50%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q Q +  +   +++ ++   Q+Q++Q ++  +Q   +Q+Q ++   +    
Sbjct: 94  QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144

Length = 387

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 29/41 (70%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
           +E  +I+ ++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q 
Sbjct: 1   EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41

Length = 110

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           N++  ++     Q QQQ QQQQ      Q Q     +Q     Q 
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQP 152

Length = 256

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +  +  +Q QQQ QQQQ      Q Q     +Q     Q Q  
Sbjct: 113 QVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155

Length = 256

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 11/61 (18%), Positives = 32/61 (52%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           +         Q ++    E+A+ +   +Q +Q++ +Q+   ++  +Q +Q  +Q +++Q+
Sbjct: 60  KPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119

Query: 225 Q 225
           Q
Sbjct: 120 Q 120

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 14/47 (29%), Positives = 17/47 (36%)

Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           N       +   Q QQQ QQQQ      Q Q     +Q     Q Q+
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQT 154

Length = 256

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 14/61 (22%), Positives = 38/61 (62%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           E++KP     Q ++   +++     +QQ+Q ++ ++Q Q +Q+QQ++Q ++   +Q+++ 
Sbjct: 90  EELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKA 149

Query: 225 Q 225
           +
Sbjct: 150 E 150

Length = 387

>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 178 ISNNDEQAKIKMQQQQ-----QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           ++N+++Q  I  Q+QQ     Q+QQ  +Q + + QQ Q   +  QQ QQQ  + 
Sbjct: 77  VNNDEQQQHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLEE 130

A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239

>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 164 PEDIKP-NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
           PEDI    VD     +  +     + +     Q   QQ + QQQ  Q QQQ QQQ  +Q+
Sbjct: 756 PEDIVDMGVDYDGNFVCGSGGMRVLPVWTDDPQSLCQQSEMQQQPSQPQQQPQQQPAEQK 815

Query: 223 QQQS 226
               
Sbjct: 816 DSDG 819

Length = 830

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
            + +   QQQ QQQ  Q QQQ +Q    +
Sbjct: 734 ALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762

Length = 820

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 28/36 (77%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +Q  +QQQQQ+  ++ ++Q+++++QQQ ++ QQ+Q 
Sbjct: 62  EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQA 97

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 29/43 (67%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           EQ + K ++Q  ++ + +Q  +Q++ +Q ++++ + Q+QQ+Q 
Sbjct: 78  EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQA 120

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           P  +    + +Q Q       AK + ++Q++ +QQ ++ ++Q+  +Q +Q++ +Q+   +
Sbjct: 45  PGAVAQQANRIQQQKKP---AAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAE 101

Query: 224 QQS 226
           + +
Sbjct: 102 KAA 104

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 14/36 (38%)

Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           Q QQQ QQQQ      Q Q     +Q     Q Q  
Sbjct: 120 QIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155

Length = 256

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           ++ +++QQQ QQQQ      Q Q     +Q     Q Q   
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPA 156

Length = 256

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 24/51 (47%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q  + N  +Q  ++   QQ QQQ QQQ  Q  QQ   Q   QQ  Q +Q  
Sbjct: 206 QPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 29/49 (59%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           Q Q    + +   + +  ++ + Q +QQQ  ++++Q+++  +++Q QQ+
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 13/59 (22%)

Query: 180 NNDEQAKIKMQQQQQQ-------------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           N +E  + + Q QQQ              + + Q +QQQ  ++++Q+++  +++Q QQ+
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693

Length = 1068

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 40/132 (30%), Gaps = 4/132 (3%)

Query: 95  SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
           +G  PF     + S +  +     H P +T              P+              
Sbjct: 717 AGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQP 776

Query: 155 MNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
                +Q   + + P     Q Q     +    + QQ    Q Q QQ QQ    Q Q QQ
Sbjct: 777 ----QYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 832

Query: 215 QQQQQQQQQQQS 226
            QQ    Q Q +
Sbjct: 833 PQQPVAPQPQDT 844

Length = 1355

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 17/43 (39%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            A+  +  Q  QQ    QQ Q     QQ      Q  QQQQQ 
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP 269

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/62 (25%), Positives = 18/62 (29%)

Query: 163 GPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
                +          S    Q  +  Q  QQ    QQ Q     QQ      Q  QQQQ
Sbjct: 208 QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ 267

Query: 223 QQ 224
           Q 
Sbjct: 268 QP 269

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 184 QAKIKMQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQQQQS 226
           + K K Q+Q+ Q++Q++      Q ++Q+Q  QQ Q Q Q QQQ QQ 
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQP 194

Length = 222

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 20/63 (31%)

Query: 183 EQAKIKMQQQQQ---QQQQQQQQQQQQQQQQQQ--------QQQQQ---------QQQQQ 222
            +A+  ++Q QQ     Q  Q  Q  Q + QQ         ++QQ          Q+Q  
Sbjct: 557 AEAQQLLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFN 616

Query: 223 QQQ 225
            Q+
Sbjct: 617 AQR 619

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +    +Q  +Q Q+  QQ  Q   Q    +  QQ  Q
Sbjct: 505 LDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQ 541

Length = 820

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 32/51 (62%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q+     ++Q K K +Q  ++ + +Q  +Q++ +Q ++++ + Q+QQ+Q +
Sbjct: 71  QSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121

Length = 387

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 27/36 (75%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           +++++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q 
Sbjct: 6   IRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41

Length = 110

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 26/35 (74%)

Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           ++++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q 
Sbjct: 7   RRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41

Length = 110

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 13/36 (36%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            QQQ QQQQ      Q Q     +Q     Q Q   
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPA 156

Length = 256

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 35/58 (60%)

Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +   +  ++Q +   E+A+ + +QQQ  ++++Q+++  +++Q QQ+ +    ++Q  Q
Sbjct: 648 QQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQ 705

Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 10/59 (16%), Positives = 28/59 (47%)

Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
                    +    +   K + Q +QQQ  ++++Q+++  +++Q QQ+ +    ++Q  
Sbjct: 646 AQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704

Length = 1068

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 15/36 (41%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           QQ    QQ Q     QQ      Q  QQQQQ  Q Q
Sbjct: 238 QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQ 273

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 8/45 (17%), Positives = 28/45 (62%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           +  A   +  + +++QQ+ + Q +Q Q++  +  Q+++Q++++ +
Sbjct: 178 ELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEIT 222

Length = 1123

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 39/77 (50%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQ-------------------------------------- 210
            +Q Q+  QQ  Q   Q    +                                      
Sbjct: 513 AEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQMMEN 572

Query: 211 -QQQQQQQQQQQQQQQS 226
            Q  Q  Q  Q + QQ+
Sbjct: 573 LQVTQGGQGGQSEMQQA 589

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           +A     +Q  +Q Q+  QQ  Q   Q    +  QQ  Q+
Sbjct: 503 EALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQR 542

Length = 820

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 33/55 (60%)

Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           VD        N  Q + K   +++Q++Q++ +QQ ++ ++Q+  +Q +Q++ +Q+
Sbjct: 43  VDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQR 97

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like)

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 37/60 (61%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
            +++     LQ +     +QA    ++ ++ +QQ+ QQ+QQ+ QQ+QQ  QQ+ QQ+QQ+
Sbjct: 49  AELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQE 108

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 15/50 (30%), Positives = 16/50 (32%)

Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           Q      QA  +     Q  QQ    QQ Q     QQ      Q  QQQ 
Sbjct: 218 QFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ 267

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 14/42 (33%), Positives = 16/42 (38%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
             ++  Q    QQ Q     QQ      Q  QQQQQ  Q Q 
Sbjct: 233 PPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 14/36 (38%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
               QQ Q     QQ      Q  QQQQQ  Q Q Q
Sbjct: 240 PPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 14/36 (38%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
               QQ Q     QQ      Q  QQQQQ  Q Q Q
Sbjct: 240 PPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 27/44 (61%)

Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
             +QA     ++   +++ ++ Q +  +Q  Q+QQ+QQQQ+++Q
Sbjct: 69  LQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 29/48 (60%)

Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           ++     ++  +    +++ ++ Q +  +Q  Q+QQ+QQQQ+++Q ++
Sbjct: 68  ELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRE 115

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            +K          S   ++   +   ++   +++ ++ Q +  +Q  Q+QQ+QQQQ+++Q
Sbjct: 53  KLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 37/57 (64%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
           ++++   + LQ   +   E A+ K +++ Q++ Q+ Q++QQ+ QQ  Q++QQ++ Q+
Sbjct: 39  KELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQK 95

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 24/31 (77%)

Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
           ++ + QQQQ   ++QQQQ++QQQQ++ Q+Q 
Sbjct: 5   RLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           DE+    MQ+ ++      +Q  +Q Q+  QQ  Q   Q    +
Sbjct: 491 DEEIAKLMQELREALDDYMRQLAEQAQRNPQQGDQPPDQGNSME 534

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +Q  +Q Q+  QQ  Q   Q    +  QQ  Q+
Sbjct: 510 RQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQR 542

Length = 820

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 27/35 (77%)

Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           ++++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q+
Sbjct: 7   RRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41

Length = 110

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 13/52 (25%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           Q Q                 Q  QQ    QQ Q     QQ      Q  QQ 
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQ 266

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
           S N +Q   + Q++ ++ + Q ++Q+Q  QQ Q Q Q QQQ QQ
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193

Length = 222

>gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 15/43 (34%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            A   +  QQQ    Q QQ Q   Q     Q + QQ      S
Sbjct: 122 PAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPS 164

Length = 177

>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
           ++T+  N  ++ + K ++ ++ + Q ++Q+Q  QQ Q Q Q QQQ QQ
Sbjct: 146 MKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193

Length = 222

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
                Q       E    ++  +++ ++ Q +  +Q  Q+QQ+QQQQ+++Q ++
Sbjct: 62  AGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRE 115

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 9/45 (20%), Positives = 29/45 (64%)

Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
                ++QAK K+QQ ++ + +Q+++ ++ Q+Q ++  ++ ++ +
Sbjct: 9   ISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAK 53

SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella. All these proteins are secreted by the type III secretion system. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon. Length = 303

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 12/51 (23%), Positives = 33/51 (64%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           + Q    +EQ   +++ +Q  +Q++ +Q ++++ + Q+QQ+Q ++ ++Q Q
Sbjct: 78  EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQ 128

Length = 387

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 19/51 (37%), Positives = 20/51 (39%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q     N  Q        QQ QQQ QQQ  Q  QQ   Q   QQ  Q +Q 
Sbjct: 205 QQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQG 255

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           Q   SN++E    +  ++ Q +  +Q  Q+QQ+QQQQ+++Q ++ + + ++
Sbjct: 72  QASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDRE 122

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 11/43 (25%), Positives = 28/43 (65%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +Q + ++  Q+ + +++Q QQ+    +QQ QQQ+ +Q + +++
Sbjct: 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERK 218

Length = 428

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            +    E   + +           + +++   +  Q QQ Q+Q    QQ
Sbjct: 201 GLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQ 249

Length = 505

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 11/42 (26%), Positives = 15/42 (35%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
             +I+ Q QQQQ      Q Q     +Q     Q Q     +
Sbjct: 118 TVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVR 159

Length = 256

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 86  NLNTHQLIHSGIRPFKCTTCDKSFVN 111
           NL  H   H+G +P+KC  C KSF +
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 7/37 (18%), Positives = 17/37 (45%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +   + +++   +  Q QQ Q+Q    QQ+     ++
Sbjct: 221 VHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257

Length = 505

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
                 + +++   +  Q QQ Q+Q    QQ+   
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLH 253

Length = 505

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
                 + +++   +  Q QQ Q+Q    QQ+   
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLH 253

Length = 505

>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
           N D  Q  I+   +Q     Q+QQ  +Q + + QQ Q   +  QQ QQQ  ++
Sbjct: 78  NNDEQQQHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLEE 130

A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 11/51 (21%), Positives = 31/51 (60%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
             Q S    + + K +++Q  ++ + +Q  +Q++ +Q ++++ + Q+QQ+Q
Sbjct: 69  SQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQ 119

Length = 387

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 6/47 (12%), Positives = 14/47 (29%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
           ++ +    +  + +      Q Q     +Q     Q Q     + Q 
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQP 162

Length = 256

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 9/42 (21%), Positives = 25/42 (59%)

Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           +  A    ++QQ+ + Q +Q Q++  +  Q+++Q++++   Q
Sbjct: 183 EGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQ 224

Length = 1123

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 8/40 (20%), Positives = 25/40 (62%)

Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
               +++QQ+ + Q +Q Q++  +  Q+++Q++++   Q+
Sbjct: 186 AAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQA 225

Length = 1123

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 9/60 (15%), Positives = 26/60 (43%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           E         Q       ++         + +++QQ+ + Q +Q Q++  +  Q+++Q++
Sbjct: 159 ELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKR 218

Length = 1123

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
                + +++   +  Q QQ Q+Q    QQ+     
Sbjct: 220 GVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGM 255

Length = 505

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
             + +++   +  Q QQ Q+Q    QQ+     ++  
Sbjct: 223 DGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYE 259

Length = 505

>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 14/56 (25%), Positives = 31/56 (55%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
           E +K   + LQ +  + D+Q +  +Q + Q+  ++ +Q + ++QQ Q    Q Q++
Sbjct: 83  EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition [Mobile and extrachromosomal element functions, Plasmid functions]. Length = 472

>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 12/61 (19%), Positives = 31/61 (50%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           E   P+   L  ++    ++    M+++ +Q++Q+  Q  ++ + Q  ++   QQQQ+  
Sbjct: 256 ELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLD 315

Query: 225 Q 225
           +
Sbjct: 316 R 316

Length = 438

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 10/49 (20%), Positives = 31/49 (63%)

Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           +I +    AK   QQ++++++Q  ++ + +Q  +Q++ +Q ++++ + Q
Sbjct: 66  RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQ 114

Length = 387

>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           D L  Q++   +  +    Q+Q+ +   +QQ +   Q  +QQ    +Q  + QQ
Sbjct: 70  DALANQLTALQKAQE---SQKQELEGILKQQAKALDQANRQQAALAKQLDELQQ 120

Length = 390

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 9/30 (30%), Positives = 22/30 (73%)

Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
            ++Q +  +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 9/30 (30%), Positives = 22/30 (73%)

Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
            ++Q +  +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 9/30 (30%), Positives = 22/30 (73%)

Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
            ++Q +  +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 9/30 (30%), Positives = 22/30 (73%)

Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
            ++Q +  +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 9/30 (30%), Positives = 22/30 (73%)

Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            ++Q +  +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163

Length = 164

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           QQQ      Q Q     +Q     Q Q     + Q +
Sbjct: 127 QQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPA 163

Length = 256

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 19/51 (37%), Positives = 21/51 (41%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            TQ       A+    Q   QQ QQQ QQQ  Q  QQ   Q   QQ  Q +
Sbjct: 203 PTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 14/65 (21%), Positives = 17/65 (26%)

Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
           Q GP +  P             +  +      Q   Q     Q  QQ    QQ Q     
Sbjct: 193 QQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLS 252

Query: 221 QQQQQ 225
           QQ   
Sbjct: 253 QQMPP 257

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 8/52 (15%), Positives = 27/52 (51%)

Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            + Q         +  + +++QQ+ + Q +Q Q++  +  Q+++Q++++   
Sbjct: 172 AEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITD 223

Length = 1123

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 13/68 (19%), Positives = 31/68 (45%)

Query: 158 ISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
            +   G  + K  +    +  + +  Q   K   +   ++   +++ ++ Q +  +Q  Q
Sbjct: 41  SNAGSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQ 100

Query: 218 QQQQQQQQ 225
           +QQ+QQQQ
Sbjct: 101 KQQEQQQQ 108

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           + +  + QQQQ   ++QQQQ++QQQQ++ Q+Q+
Sbjct: 3   RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
           I+  +  + QQQQ   ++QQQQ++QQQQ++ Q+Q 
Sbjct: 1   IRRARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/35 (40%), Positives = 26/35 (74%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           +++ +  + QQQQ   ++QQQQ++QQQQ++ Q+Q 
Sbjct: 1   IRRARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           N   Q  I   +Q +++   Q+ + +++Q QQ+    +QQ QQQ+
Sbjct: 165 NQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQK 209

Length = 428

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           +   + +++   +  Q QQ Q+Q    QQ+     ++ ++
Sbjct: 221 VHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYEA 260

Length = 505

>gnl|CDD|221416 pfam12090, Spt20, Spt20 family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            QQ QQQ Q Q Q+QQ ++    Q QQ   Q+Q+   
Sbjct: 87  PQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPVK 123

This presumed domain is found in the Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large cmplex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains. Length = 191

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ---QQQ 225
           + LQ  + +  E    +  Q +   Q  Q+    ++Q++ +   ++ + Q    QQ+
Sbjct: 7   NVLQELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQE 63

Length = 835

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 20/72 (27%), Positives = 30/72 (41%)

Query: 155 MNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
             +      P  +      +Q  + +  +Q   +M+ +  + QQQ QQQQQQQ       
Sbjct: 309 QPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAA 368

Query: 215 QQQQQQQQQQQS 226
            QQQ  QQ  Q 
Sbjct: 369 HQQQMNQQVGQG 380

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 9/51 (17%), Positives = 22/51 (43%)

Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            T       +A+I  +Q +      +Q+ QQ +  Q  +++++   Q   +
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSE 218

Length = 420

>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 153 DRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQ--------Q 204
           D++  ++     +  K  +  LQ Q+ NN +  +    QQ   Q    +QQ        +
Sbjct: 575 DQIENLARSGDRDQAKQLLSQLQ-QMMNNLQMGQPGQGQQMGDQSGDMEQQMNKLGELMR 633

Query: 205 QQQQQQQQQQQQQQQQQQQQQ 225
           +QQQ + +  +  Q Q++ + 
Sbjct: 634 KQQQLRDETFKLDQDQRRDRM 654

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
           +A  +   QQQ QQQ  Q QQQ +Q    +
Sbjct: 733 RALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762

Length = 820

>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 190 QQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQQQQS 226
           +QQ Q Q         Q    Q+ Q+ Q+Q+ +   +QQ  
Sbjct: 59  KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAK 99

Length = 390

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 18/38 (47%), Positives = 18/38 (47%)

Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           K  QQ   Q   QQ   Q   QQ QQQ QQQ  Q  QQ
Sbjct: 202 KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ 239

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 15/54 (27%), Positives = 17/54 (31%)

Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            L  Q+       +        QQ      Q  QQQQQ  Q Q Q   Q Q   
Sbjct: 231 PLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           + +  + QQQQ   ++QQQQ++QQQQ++ Q+Q 
Sbjct: 3   RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
           + +  + QQQQ   ++QQQQ++QQQQ++ Q+Q 
Sbjct: 3   RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 10/37 (27%), Positives = 25/37 (67%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            Q+ + +++Q QQ+    +QQ QQQ+ +Q + +++++
Sbjct: 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKT 220

Length = 428

>gnl|CDD|221416 pfam12090, Spt20, Spt20 family

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
              QQ QQQ Q Q Q+QQ ++    Q QQ   Q+Q+ 
Sbjct: 85  TVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKP 121

This presumed domain is found in the Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large cmplex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains. Length = 191

>gnl|CDD|221416 pfam12090, Spt20, Spt20 family

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           QQ QQQ Q Q Q+QQ ++    Q QQ   Q+Q+  + 
Sbjct: 88  QQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPVKK 124

This presumed domain is found in the Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large cmplex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains. Length = 191

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 22/38 (57%), Positives = 22/38 (57%)

Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
             Q Q QQQ Q   QQQQ  Q QQQ Q QQQQQ  QQ 
Sbjct: 205 GGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQ 242

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           D++  +  L  +   +D+  +      Q   +QQ Q+ QQ  QQQ +   QQ   Q   
Sbjct: 103 DMQGTMQLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161

Length = 172

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 9/36 (25%), Positives = 11/36 (30%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            QQQQ      Q Q     +Q     Q Q     + 
Sbjct: 125 AQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRT 160

Length = 256

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           +P V N   Q +  +   + + Q QQQ  Q  QQ   Q   QQ  Q +Q  ++ ++Q
Sbjct: 206 QPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           D+   V    T  +    Q +    +      + + +Q Q   +Q +++ ++ Q+Q QQ
Sbjct: 222 DVVAGVAQGGTGAAVAVLQKEAGKLEADLALLRAEMEQLQAVIKQLKEEFKKLQEQFQQ 280

SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella. All these proteins are secreted by the type III secretion system. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon. Length = 303

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 11/47 (23%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ---QQQQQQQQQQQQQS 226
           ++   +++Q +++   Q+ + +++Q QQ+    +QQ QQQ+ +Q ++
Sbjct: 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215

Length = 428

>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           +++   +  Q QQ Q+Q    QQ+     ++ + S
Sbjct: 227 KRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYEAS 261

Length = 505

>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            D+Q         Q   +QQ Q+ QQ  QQQ +   QQ   Q   
Sbjct: 117 GDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161

Length = 172

>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 4/53 (7%), Positives = 14/53 (26%)

Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            L      + ++      ++    Q +    Q   +  +   +  Q      +
Sbjct: 120 LLAPAELGDLQREAKLAAEKAAVSQAELDAAQALLRAAEALVEAAQAALASAK 172

Length = 372

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            + Q Q Q++QQ + +Q  Q  +QQQ +  Q  Q+QS
Sbjct: 458 PRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQS 494

Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG2462|consensus	279		99.95
KOG2462|consensus	279		99.94
KOG1074|consensus	958		99.87
KOG3608|consensus	467		99.84
KOG1074|consensus	958		99.79
KOG3576|consensus	267		99.75
KOG3608|consensus	467		99.68
KOG3576|consensus	267		99.62
KOG3623|consensus	1007		99.59
KOG3623|consensus	1007		99.51
PLN03086	567	PRLI-interacting factor K; Provisional	99.38
PLN03086	567	PRLI-interacting factor K; Provisional	99.19
PHA00733	128	hypothetical protein	99.15
PHA00733	128	hypothetical protein	99.0
PHA02768	55	hypothetical protein; Provisional	98.95
KOG3993|consensus	500		98.86
PHA02768	55	hypothetical protein; Provisional	98.86
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.72
PHA00616	44	hypothetical protein	98.56
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.5
PHA00616	44	hypothetical protein	98.46
KOG3993|consensus	500		98.3
PHA00732	79	hypothetical protein	98.3
PHA00732	79	hypothetical protein	98.19
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.09
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.89
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.87
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.85
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.75
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.64
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.64
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.62
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.52
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.51
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.44
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.4
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.37
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.19
smart00355	26	ZnF_C2H2 zinc finger.	96.91
smart00355	26	ZnF_C2H2 zinc finger.	96.88
COG5048	467	FOG: Zn-finger [General function prediction only]	96.82
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.69
PRK04860	160	hypothetical protein; Provisional	96.68
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.61
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.54
PRK04860	160	hypothetical protein; Provisional	96.2
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.09
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.87
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.6
KOG2231|consensus	669		95.56
KOG1146|consensus	1406		95.46
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	94.87
KOG1146|consensus	1406		94.71
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.43
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.21
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.04
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	93.79
COG5048	467	FOG: Zn-finger [General function prediction only]	93.69
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.66
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	93.65
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.53
KOG2785|consensus	390		93.47
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	93.07
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	93.07
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	92.99
KOG2231|consensus	669		92.87
COG4049	65	Uncharacterized protein containing archaeal-type C	92.21
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.03
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	91.81
KOG2893|consensus	341		91.75
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.68
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.14
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.73
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.71
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.7
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	90.66
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	90.58
COG4049	65	Uncharacterized protein containing archaeal-type C	90.25
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	90.16
PTZ00255	90	60S ribosomal protein L37a; Provisional	90.07
COG1592	166	Rubrerythrin [Energy production and conversion]	89.98
PRK10350	145	hypothetical protein; Provisional	89.86
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.47
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	89.15
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	88.96
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	88.9
KOG2482|consensus	423		88.78
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	88.46
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.44
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	88.13
KOG2186|consensus	276		87.96
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.17
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	86.95
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	86.64
COG3357	97	Predicted transcriptional regulator containing an	86.46
COG1592	166	Rubrerythrin [Energy production and conversion]	86.27
KOG2186|consensus	276		86.23
PRK04023	1121	DNA polymerase II large subunit; Validated	86.2
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	85.8
smart00531	147	TFIIE Transcription initiation factor IIE.	85.68
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	85.19
PF14353	128	CpXC: CpXC protein	84.85
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	84.57
PF01286	34	XPA_N: XPA protein N-terminal; InterPro: IPR022652	84.49
KOG2482|consensus	423		84.48
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	84.39
KOG4173|consensus	253		84.22
PRK06266	178	transcription initiation factor E subunit alpha; V	83.93
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	83.93
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	83.65
KOG2893|consensus	341		82.88
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	82.7
PHA00626	59	hypothetical protein	82.67
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	82.47
KOG2907|consensus	116		82.22
KOG0402|consensus	92		82.13
PRK14714	1337	DNA polymerase II large subunit; Provisional	81.94
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	81.89
COG1198	730	PriA Primosomal protein N' (replication factor Y)	81.74
smart00531	147	TFIIE Transcription initiation factor IIE.	81.67
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	81.25
COG1198	730	PriA Primosomal protein N' (replication factor Y)	80.48
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	80.34

>KOG2462|consensus

Probab=99.95  E-value=2.1e-29  Score=193.95  Aligned_cols=123  Identities=33%  Similarity=0.624  Sum_probs=91.7

Q ss_pred             CcccCccchhHHHhhcCCC-------------ccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHH
Q psy14244         24 NAYKCHQCQRLIFLSANAG-------------VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH   90 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~-------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   90 (226)
                      ..|+|++||+.+.+.++|.             .+.|++||+.|.+...|..|+++|+  -+++|.+||+.|...=.|.-|
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGH  206 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGH  206 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcc
Confidence            4477777777777777644             4467777777777777777777776  567777777777777777777


Q ss_pred             HhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCC
Q psy14244         91 QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus        91 ~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      +|+|||||||.|+.|+++|..             +++|..|+.+|. +.|+|.|..|+|.|...+.|.+|..
T Consensus       207 iRTHTGEKPF~C~hC~kAFAD-------------RSNLRAHmQTHS-~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFAD-------------RSNLRAHMQTHS-DVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cccccCCCCccCCcccchhcc-------------hHHHHHHHHhhc-CCccccCcchhhHHHHHHHHHHhhh
Confidence            777777777777777777776             777777777777 5677777777777777777777754

>KOG2462|consensus

Probab=99.94  E-value=5.1e-28  Score=186.36  Aligned_cols=131  Identities=24%  Similarity=0.421  Sum_probs=122.9

Q ss_pred             ccccCccccccCChhHHhhccCCCCC---CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMK---PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH  119 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~  119 (226)
                      .|.|+.||+.+.+.++|.+|..+|..   .+.+.|++||+.|.+...|..|+++|+  -+.+|.+||+.|.+        
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSR--------  199 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSR--------  199 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccc--------
Confidence            68999999999999999999998874   578999999999999999999999998  67999999999999        


Q ss_pred             CCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccchhhhccchhHHHHHH
Q psy14244        120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKM  189 (226)
Q Consensus       120 ~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~~~~~~~~~~~~~~~  189 (226)
                           .+-|..|+++|+ |||||.|+.|++.|.++++|+.||.+|.+.+.|.|..|...|.-..-+..|.
T Consensus       200 -----PWLLQGHiRTHT-GEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  200 -----PWLLQGHIRTHT-GEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             -----hHHhhccccccc-CCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence                 999999999999 7999999999999999999999999999999999999999998777666654

>KOG1074|consensus

Probab=99.87  E-value=4e-23  Score=178.93  Aligned_cols=68  Identities=34%  Similarity=0.733  Sum_probs=60.9

Q ss_pred             ccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCC----CccCC---CCccccccc
Q psy14244         45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR----PFKCT---TCDKSFVNQ  112 (226)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k----~~~C~---~C~~~f~~~  112 (226)
                      .|-+|.+.....+.|+.|.++|+|++||+|.+||++|.++.+|+.||-+|....    .|.|+   +|-+.|.+.
T Consensus       607 qCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~  681 (958)
T KOG1074|consen  607 QCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNA  681 (958)
T ss_pred             ceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccc
Confidence            599999999999999999999999999999999999999999999999986543    47788   788777654

>KOG3608|consensus

Probab=99.84  E-value=1.1e-22  Score=161.13  Aligned_cols=164  Identities=23%  Similarity=0.438  Sum_probs=143.0

Q ss_pred             ceeeEEeeCCCCcccCccchhHHHhhcCC------------CccccCccccccCChhHHhhccCCCCCCCCcccccCccc
Q psy14244         13 QQTLLCIHGNDNAYKCHQCQRLIFLSANA------------GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKS   80 (226)
Q Consensus        13 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   80 (226)
                      |+.|+++|+++|...|+.||..|..+..+            .+|.|..|.+.|.+...|..|+..|.  .-|+|+.|+.+
T Consensus       195 LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmt  272 (467)
T KOG3608|consen  195 LREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMT  272 (467)
T ss_pred             HHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccC
Confidence            36999999999999999999998765432            37899999999999999999998875  46899999999


Q ss_pred             cCChhhHHHHHhH-hcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc--chhhhcChhhh
Q psy14244         81 FTNSQNLNTHQLI-HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNL  157 (226)
Q Consensus        81 f~~~~~l~~H~~~-h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~--C~~~f~~~~~L  157 (226)
                      .+..+.|..|++. |+..|||+|+.|++.|.+             .++|.+|...|.  +..|.|..  |..+|.+...+
T Consensus       273 c~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~-------------esdL~kH~~~HS--~~~y~C~h~~C~~s~r~~~q~  337 (467)
T KOG3608|consen  273 CSSASSLTTHIRYRHSKDKPFKCDECDTRCVR-------------ESDLAKHVQVHS--KTVYQCEHPDCHYSVRTYTQM  337 (467)
T ss_pred             CCChHHHHHHHHhhhccCCCccccchhhhhcc-------------HHHHHHHHHhcc--ccceecCCCCCcHHHHHHHHH
Confidence            9999999999987 889999999999999998             899999988666  77899977  99999999999


Q ss_pred             hccCCCCC-CCC--CCcccchhhhccchhHHHHHHHHHH
Q psy14244        158 ISHQCGPE-DIK--PNVDNLQTQISNNDEQAKIKMQQQQ  193 (226)
Q Consensus       158 ~~H~~~h~-~~~--~~~c~~~~~~~~~~~~~~~~~q~~~  193 (226)
                      ++|++-++ |..  +|.|-.|.+.++....+.+|+-.+.
T Consensus       338 ~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH  376 (467)
T KOG3608|consen  338 RRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKH  376 (467)
T ss_pred             HHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhh
Confidence            99987655 554  4999999999999998888876543

>KOG1074|consensus

Probab=99.79  E-value=1.3e-20  Score=163.52  Aligned_cols=52  Identities=37%  Similarity=0.770  Sum_probs=49.9

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHh
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      +|+|.+|++.|.+.+.|+.|.++|+|++||.|.+||.+|.++.+|..|.-.|
T Consensus       353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH  404 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRH  404 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeec
Confidence            7899999999999999999999999999999999999999999999997766

>KOG3576|consensus

Probab=99.75  E-value=3.8e-20  Score=136.53  Aligned_cols=120  Identities=26%  Similarity=0.476  Sum_probs=107.2

Q ss_pred             hcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCC
Q psy14244         38 SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTS  117 (226)
Q Consensus        38 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~  117 (226)
                      .++-..|.|.+|++.|.-...|.+|++-|...+.|.|..||+.|...-.|.+|+|+|+|.+||+|..|+++|+.      
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq------  185 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ------  185 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh------
Confidence            34445799999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             CCCCCCCCccccccccccCCC----------CCCccCCcchhhhcChhhhhccCCCCCCCCCC
Q psy14244        118 THTPTYTKSNLAQHSCMNSHF----------PKPYQCDRCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       118 ~~~~~~~~~~l~~H~~~~~~~----------~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                             .-+|..|.+..++.          .|-|.|+.||.+-.....+..|++.|+...|.
T Consensus       186 -------rcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spa  241 (267)
T KOG3576|consen  186 -------RCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPA  241 (267)
T ss_pred             -------hccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHH
Confidence                   88888887655532          46799999999999999999999998877654

>KOG3608|consensus

Probab=99.68  E-value=2.4e-18  Score=136.72  Aligned_cols=145  Identities=26%  Similarity=0.497  Sum_probs=124.2

Q ss_pred             CCCCCCceeeeeceeeEEeeC--CCCcccCccchhHHHhhcCCC--------ccccCccccccCChhHHhhccC-CCCCC
Q psy14244          1 MFTQTPNLVLFSQQTLLCIHG--NDNAYKCHQCQRLIFLSANAG--------VHKCEYCHKVFDQQSSLLSHNC-PQMKP   69 (226)
Q Consensus         1 ~f~~~~~l~~~~~~~h~~~h~--~~~~~~C~~C~k~f~~~~~~~--------~~~C~~C~~~f~~~~~l~~H~~-~h~~~   69 (226)
                      ||..+..|.     .|++-.+  ...+|.|..|.|.|.+...|+        -|+|+.|+.+....++|..|++ .|..+
T Consensus       216 ~F~~~tkl~-----DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~d  290 (467)
T KOG3608|consen  216 LFRTKTKLF-----DHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKD  290 (467)
T ss_pred             HhccccHHH-----HHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccC
Confidence            577777773     5655543  457999999999998776555        6799999999999999999987 47889


Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCCCCCCCCCCccccccccccCCC--CCCccCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF--PKPYQCD  145 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~--~k~~~C~  145 (226)
                      +||+|+.|++.|.+...|.+|+..|+ +..|.|..  |..++.+             ...|.+|++.++.|  +-+|.|.
T Consensus       291 kpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~-------------~~q~~~H~~evhEg~np~~Y~CH  356 (467)
T KOG3608|consen  291 KPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRT-------------YTQMRRHFLEVHEGNNPILYACH  356 (467)
T ss_pred             CCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHH-------------HHHHHHHHHHhccCCCCCceeee
Confidence            99999999999999999999999988 77799987  9999998             88999999877744  4579999


Q ss_pred             cchhhhcChhhhhccCCCC
Q psy14244        146 RCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       146 ~C~~~f~~~~~L~~H~~~h  164 (226)
                      .|++.|++..+|.+|+..-
T Consensus       357 ~Cdr~ft~G~~L~~HL~kk  375 (467)
T KOG3608|consen  357 CCDRFFTSGKSLSAHLMKK  375 (467)
T ss_pred             cchhhhccchhHHHHHHHh
Confidence            9999999999999997543

>KOG3576|consensus

Probab=99.62  E-value=3.6e-17  Score=120.88  Aligned_cols=108  Identities=27%  Similarity=0.446  Sum_probs=97.1

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcch
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCS  148 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~  148 (226)
                      ...|.|.+|++.|.....|.+|++-|...+.+-|..||+.|..             .-+|++|+++|+ |.+||+|..|+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfnd-------------tfdlkrh~rtht-gvrpykc~~c~  180 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFND-------------TFDLKRHTRTHT-GVRPYKCSLCE  180 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccc-------------hhhhhhhhcccc-Cccccchhhhh
Confidence            3569999999999999999999999999999999999999998             889999999999 79999999999


Q ss_pred             hhhcChhhhhccCCCCCC-----------CCCCcccchhhhccchhHHHHHHH
Q psy14244        149 QFFGDRMNLISHQCGPED-----------IKPNVDNLQTQISNNDEQAKIKMQ  190 (226)
Q Consensus       149 ~~f~~~~~L~~H~~~h~~-----------~~~~~c~~~~~~~~~~~~~~~~~q  190 (226)
                      +.|+.+-.|+.|++.-+|           ++.|+|..|+.+....+....|+.
T Consensus       181 kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~  233 (267)
T KOG3576|consen  181 KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLK  233 (267)
T ss_pred             HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHH
Confidence            999999999999864433           578999999999888777666653

>KOG3623|consensus

Probab=99.59  E-value=1.6e-16  Score=136.60  Aligned_cols=105  Identities=30%  Similarity=0.613  Sum_probs=95.0

Q ss_pred             ccCccccccCChhHHhhccCCCC--CCCCcccccCccccCChhhHHHHHhHhcC-------------CCCccCCCCcccc
Q psy14244         45 KCEYCHKVFDQQSSLLSHNCPQM--KPRPYKCDTCEKSFTNSQNLNTHQLIHSG-------------IRPFKCTTCDKSF  109 (226)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------~k~~~C~~C~~~f  109 (226)
                      .|++|.+++.....|+.|++..+  .+..|.|..|..+|.+...|.+||.+|..             .+.|+|+.||++|
T Consensus       212 tcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAF  291 (1007)
T KOG3623|consen  212 TCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAF  291 (1007)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhh
Confidence            79999999999999999976543  35569999999999999999999999854             3469999999999


Q ss_pred             cccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCC
Q psy14244        110 VNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      ..             +-.|+.|+++|. |+|||.|+.|+|.|.....+..||.+
T Consensus       292 Kf-------------KHHLKEHlRIHS-GEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  292 KF-------------KHHLKEHLRIHS-GEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hh-------------HHHHHhhheeec-CCCCcCCcccccccccCCcccccccc
Confidence            98             999999999999 79999999999999999999999853

>KOG3623|consensus

Probab=99.51  E-value=2.4e-15  Score=129.43  Aligned_cols=82  Identities=35%  Similarity=0.762  Sum_probs=76.4

Q ss_pred             CCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc
Q psy14244         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR  146 (226)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~  146 (226)
                      +.+.+|.|+.|+++|.-.+.|.+|.-.|+|.+||.|.+|.++|..             +-.|..|++.|. |+|||.|+.
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKH-------------KHHLtEHkRLHS-GEKPfQCdK  955 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKH-------------KHHLTEHKRLHS-GEKPFQCDK  955 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhh-------------hhhhhhhhhhcc-CCCcchhhh
Confidence            445689999999999999999999999999999999999999998             899999999999 799999999


Q ss_pred             chhhhcChhhhhccCC
Q psy14244        147 CSQFFGDRMNLISHQC  162 (226)
Q Consensus       147 C~~~f~~~~~L~~H~~  162 (226)
                      |+|.|.....+..||.
T Consensus       956 ClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  956 CLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhhcccccchHhhhc
Confidence            9999999999999985

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.38  E-value=1.4e-13  Score=118.66  Aligned_cols=88  Identities=15%  Similarity=0.368  Sum_probs=46.3

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhc
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFG  152 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~  152 (226)
                      .|+.|++.|. ...|..|+++++  +++.|+ |++.+ .             +..|..|...+. ..+++.|+.|++.|.
T Consensus       455 ~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~-------------R~~L~~H~~thC-p~Kpi~C~fC~~~v~  515 (567)
T PLN03086        455 HCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-E-------------KEQMVQHQASTC-PLRLITCRFCGDMVQ  515 (567)
T ss_pred             cCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-c-------------hhHHHhhhhccC-CCCceeCCCCCCccc
Confidence            5555655553 344555555543  455565 55443 2             455555555444 355566666665553


Q ss_pred             C----------hhhhhccCCCCCCCCCCcccchhhhcc
Q psy14244        153 D----------RMNLISHQCGPEDIKPNVDNLQTQISN  180 (226)
Q Consensus       153 ~----------~~~L~~H~~~h~~~~~~~c~~~~~~~~  180 (226)
                      .          .+.|..|..++ |.+++.|..|+....
T Consensus       516 ~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        516 AGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVM  552 (567)
T ss_pred             cCccccchhhhhhhHHHHHHhc-CCcceEccccCCeee
Confidence            1          23455555553 555555655554443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.19  E-value=1e-11  Score=107.18  Aligned_cols=128  Identities=17%  Similarity=0.356  Sum_probs=96.6

Q ss_pred             ccCcc--chhHHHhhcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         26 YKCHQ--CQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        26 ~~C~~--C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      ..|+.  ||..|....-...+.|+.|++.|. ...|..|+..++  .++.|+ ||+.+ ....|..|+++|.+++++.|+
T Consensus       434 V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~  508 (567)
T PLN03086        434 VVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCR  508 (567)
T ss_pred             eeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCC
Confidence            45763  777776655556778999999996 678999999875  789999 99765 668999999999999999999


Q ss_pred             CCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCC
Q psy14244        104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       104 ~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h  164 (226)
                      +|++.+....++..-.   ...+.|..|....  +.+++.|..||+.|..+ +|..|+...
T Consensus       509 fC~~~v~~g~~~~d~~---d~~s~Lt~HE~~C--G~rt~~C~~Cgk~Vrlr-dm~~H~~~~  563 (567)
T PLN03086        509 FCGDMVQAGGSAMDVR---DRLRGMSEHESIC--GSRTAPCDSCGRSVMLK-EMDIHQIAV  563 (567)
T ss_pred             CCCCccccCccccchh---hhhhhHHHHHHhc--CCcceEccccCCeeeeh-hHHHHHHHh
Confidence            9999985210000000   0135788997663  68999999999998865 667776543

>PHA00733 hypothetical protein

Probab=99.15  E-value=7.7e-12  Score=88.91  Aligned_cols=83  Identities=18%  Similarity=0.366  Sum_probs=53.7

Q ss_pred             CCCCcccccCccccCChhhHHHH--Hh---HhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy14244         68 KPRPYKCDTCEKSFTNSQNLNTH--QL---IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (226)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~  142 (226)
                      ..+++.|.+|.+.|.+...|..+  ++   .+.+.+||.|+.|++.|..             .+.|..|.+.+   +.+|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss-------------~s~L~~H~r~h---~~~~  100 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSS-------------SVSLKQHIRYT---EHSK  100 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCC-------------HHHHHHHHhcC---CcCc
Confidence            34566777777666666555554  21   2234667777777777776             67777776653   2467


Q ss_pred             cCCcchhhhcChhhhhccCCCCCC
Q psy14244        143 QCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       143 ~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      .|+.|++.|.....|..|+...++
T Consensus       101 ~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        101 VCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCCCCCCccCCHHHHHHHHHHhcC
Confidence            777777777777777777665554

>PHA00733 hypothetical protein

Probab=99.00  E-value=1.5e-10  Score=82.33  Aligned_cols=78  Identities=21%  Similarity=0.313  Sum_probs=61.9

Q ss_pred             ccccCccccccCChhHHh------hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCC
Q psy14244         43 VHKCEYCHKVFDQQSSLL------SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT  116 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~------~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~  116 (226)
                      ++.|.+|.+.|.....|.      .|+. +.+++||.|+.|++.|.+...|..|++.+  +.+|.|..|++.|..     
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~-----  111 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRN-----  111 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCC-----
Confidence            456777777666655444      4443 34588999999999999999999999876  457999999999998     


Q ss_pred             CCCCCCCCCccccccccccC
Q psy14244        117 STHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus       117 ~~~~~~~~~~~l~~H~~~~~  136 (226)
                              ...|..|++..+
T Consensus       112 --------~~sL~~H~~~~h  123 (128)
T PHA00733        112 --------TDSTLDHVCKKH  123 (128)
T ss_pred             --------HHHHHHHHHHhc
Confidence                    889999987666

>PHA02768 hypothetical protein; Provisional

Probab=98.95  E-value=5.2e-10  Score=66.15  Aligned_cols=39  Identities=21%  Similarity=0.526  Sum_probs=32.6

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      .|.|+.||+.|.....|..|+++|+  ++|+|..|++.|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~   43 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLR   43 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecc
Confidence            4788888888888888888888887  68888888888876

>KOG3993|consensus

Probab=98.86  E-value=1.6e-09  Score=88.73  Aligned_cols=70  Identities=30%  Similarity=0.526  Sum_probs=59.5

Q ss_pred             ccCccchhHHHhhcCCC----------ccccCccccccCChhHHhhccCCCCCC--------------------------
Q psy14244         26 YKCHQCQRLIFLSANAG----------VHKCEYCHKVFDQQSSLLSHNCPQMKP--------------------------   69 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~----------~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------------   69 (226)
                      |.|..|...|.+...|.          -|+|+.|+|.|....+|..|.++|-..                          
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            88999998887766655          478999999999999999999888422                          


Q ss_pred             -------CCcccccCccccCChhhHHHHHhHhc
Q psy14244         70 -------RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 -------~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                             ..|.|.+|++.|....-|+.|..+|.
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence                   14899999999999999999988774

>PHA02768 hypothetical protein; Provisional

Probab=98.86  E-value=5.8e-10  Score=65.96  Aligned_cols=45  Identities=13%  Similarity=0.301  Sum_probs=40.4

Q ss_pred             CCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhH
Q psy14244         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNL   87 (226)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   87 (226)
                      +-.|.|+.||+.|...+.|..|+++|+  ++|+|..|++.|...+.|
T Consensus         3 ~~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          3 LLGYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            345899999999999999999999999  699999999999877665

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.72  E-value=7.9e-09  Score=52.29  Aligned_cols=25  Identities=48%  Similarity=0.970  Sum_probs=21.5

Q ss_pred             hHHHHHhHhcCCCCccCCCCccccc
Q psy14244         86 NLNTHQLIHSGIRPFKCTTCDKSFV  110 (226)
Q Consensus        86 ~l~~H~~~h~~~k~~~C~~C~~~f~  110 (226)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4778999999999999999998885

...

>PHA00616 hypothetical protein

Probab=98.56  E-value=1.3e-08  Score=57.28  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             CccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      ||.|+.||+.|..++.|..|++.|+|++|+.++.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            79999999999999999999999999999988753

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.50  E-value=1.4e-08  Score=51.38  Aligned_cols=26  Identities=42%  Similarity=0.792  Sum_probs=23.8

Q ss_pred             HHhhccCCCCCCCCcccccCccccCC
Q psy14244         58 SLLSHNCPQMKPRPYKCDTCEKSFTN   83 (226)
Q Consensus        58 ~l~~H~~~h~~~~~~~C~~C~~~f~~   83 (226)
                      +|.+|+++|++++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999964

...

>PHA00616 hypothetical protein

Probab=98.46  E-value=7e-08  Score=54.35  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCCCCccCCCCc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD  106 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~  106 (226)
                      ||.|+.||+.|.....|..|++.|++++++.|+.=-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y   36 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFY   36 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEE
Confidence            578888888888888888888888888888877533

>KOG3993|consensus

Probab=98.30  E-value=7.4e-08  Score=79.24  Aligned_cols=143  Identities=18%  Similarity=0.285  Sum_probs=107.5

Q ss_pred             CCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCC-----------------------
Q psy14244         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI-----------------------   97 (226)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------   97 (226)
                      +..|.|..|...|.+.-.|..|.-.-.....|+|+.|++.|+-..+|..|.|.|...                       
T Consensus       265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e  344 (500)
T KOG3993|consen  265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE  344 (500)
T ss_pred             HHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence            336899999999999999999987666667899999999999999999999988321                       


Q ss_pred             ----------CCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCC---------------------------
Q psy14244         98 ----------RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK---------------------------  140 (226)
Q Consensus        98 ----------k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k---------------------------  140 (226)
                                .-|.|..|++.|.+             .+.|++|.-+|+..+.                           
T Consensus       345 a~rsg~dss~gi~~C~~C~KkFrR-------------qAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~  411 (500)
T KOG3993|consen  345 AERSGDDSSSGIFSCHTCGKKFRR-------------QAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHS  411 (500)
T ss_pred             ccccCCcccCceeecHHhhhhhHH-------------HHHHHHhHHhhhccccchhcccCcchhhccccccccccccccc
Confidence                      13899999999998             7777777555442211                           


Q ss_pred             ----------Ccc--------CCcchhhhcChhhhhccCCCCCCCCCCcccchhhhccchhHHHHHHHHHHHHH
Q psy14244        141 ----------PYQ--------CDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQ  196 (226)
Q Consensus       141 ----------~~~--------C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~~~~~~~~~~~~~~~q~~~q~~  196 (226)
                                .|.        |++||..+..+..--.+.+.-..+..|.|.+|...+.+...+..|++.-+-.+
T Consensus       412 ~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  412 SASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             ccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChHH
Confidence                      011        55666666665555555555556677889999999998888888876654443

>PHA00732 hypothetical protein

Probab=98.30  E-value=4.6e-07  Score=58.64  Aligned_cols=47  Identities=28%  Similarity=0.428  Sum_probs=34.6

Q ss_pred             ccccCccccccCChhHHhhccCC-CCCCCCcccccCccccCChhhHHHHHhHhc
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCP-QMKPRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      +|.|+.||+.|.+.+.|..|++. |.   ++.|+.|++.|.   .|..|+.+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            46788888888888888888874 54   357888888887   3667775543

>PHA00732 hypothetical protein

Probab=98.19  E-value=1.3e-06  Score=56.55  Aligned_cols=38  Identities=29%  Similarity=0.549  Sum_probs=33.8

Q ss_pred             CcccccCccccCChhhHHHHHhH-hcCCCCccCCCCcccccc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLI-HSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~k~~~C~~C~~~f~~  111 (226)
                      ||.|+.|++.|.....|..|++. |++   +.|+.|++.|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~~   39 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYRR   39 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeCC
Confidence            68999999999999999999985 653   689999999975

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.09  E-value=5.3e-07  Score=54.19  Aligned_cols=51  Identities=31%  Similarity=0.505  Sum_probs=38.9

Q ss_pred             CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCC-CCCccCCcchhhhcChhhhhccCCCCC
Q psy14244         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~-~k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      .|.||+|++.|.              ...|..|....+.. .+.+.|++|...++  .+|..|+..++
T Consensus         2 ~f~CP~C~~~~~--------------~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGFS--------------ESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCccC--------------HHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            489999999654              67899997665533 46789999998765  38888887655

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.89  E-value=8.9e-06  Score=48.83  Aligned_cols=50  Identities=28%  Similarity=0.435  Sum_probs=36.7

Q ss_pred             ccccCccccccCChhHHhhccC-CCCCC-CCcccccCccccCChhhHHHHHhHhc
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNC-PQMKP-RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      .|.|++|++. .+...|..|.. .|..+ +.+.||+|...+.  ..|..|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            4789999994 55678999954 44443 5689999998655  48888988754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.87  E-value=1e-05  Score=64.59  Aligned_cols=70  Identities=26%  Similarity=0.575  Sum_probs=45.9

Q ss_pred             CCCccccc--CccccCChhhHHHHHhH-hcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCC
Q psy14244         69 PRPYKCDT--CEKSFTNSQNLNTHQLI-HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (226)
Q Consensus        69 ~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~  145 (226)
                      ++||+|++  |.+.|.+...|+-|+.. |...+..+-+.                    +   ..+--... ..|||+|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~--------------------p---~~~~~F~~-~~KPYrCe  402 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS--------------------P---EKMNIFSA-KDKPYRCE  402 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCC--------------------c---cccccccc-cCCceecc
Confidence            47888876  88888888888888765 32222111110                    0   00110112 47999999


Q ss_pred             cchhhhcChhhhhccCC
Q psy14244        146 RCSQFFGDRMNLISHQC  162 (226)
Q Consensus       146 ~C~~~f~~~~~L~~H~~  162 (226)
                      +|+|.|.+...|+.|..
T Consensus       403 vC~KRYKNlNGLKYHr~  419 (423)
T COG5189         403 VCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ccchhhccCccceeccc
Confidence            99999999999999964

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.85  E-value=9.4e-06  Score=39.58  Aligned_cols=23  Identities=48%  Similarity=0.895  Sum_probs=17.8

Q ss_pred             cccccCccccCChhhHHHHHhHh
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56888888888888888887764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.75  E-value=1.5e-06  Score=42.49  Aligned_cols=22  Identities=32%  Similarity=0.679  Sum_probs=20.3

Q ss_pred             ccCCcchhhhcChhhhhccCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      |.|+.|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.64  E-value=9.1e-06  Score=55.13  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhc
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFG  152 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~  152 (226)
                      .|..|+..|.+...|..|+...++...-    ....+..             ...+..+.....  ...+.|.+|++.|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~-------------~~~~~~~~~~~~--~~~~~C~~C~~~f~   61 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVD-------------PNRLLNYLRKKV--KESFRCPYCNKTFR   61 (100)
T ss_dssp             -------------------------------------------------------------------SSEEBSSSS-EES
T ss_pred             Cccccccccccccccccccccccccccc----ccccccc-------------cccccccccccc--CCCCCCCccCCCCc
Confidence            3777888888888888887664432211    1111111             233333332222  33688888888888


Q ss_pred             ChhhhhccCCCC
Q psy14244        153 DRMNLISHQCGP  164 (226)
Q Consensus       153 ~~~~L~~H~~~h  164 (226)
                      +...|..||+.+
T Consensus        62 s~~~l~~Hm~~~   73 (100)
T PF12756_consen   62 SREALQEHMRSK   73 (100)
T ss_dssp             SHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCc
Confidence            888888888754

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.64  E-value=1.2e-05  Score=40.91  Aligned_cols=26  Identities=27%  Similarity=0.643  Sum_probs=24.0

Q ss_pred             CccCCcchhhhcChhhhhccCCCCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      ||.|+.|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999998864

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.62  E-value=2.3e-05  Score=62.65  Aligned_cols=70  Identities=23%  Similarity=0.444  Sum_probs=40.2

Q ss_pred             CCcccCcc--chhHHHhhcCCCcccc-CccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHh
Q psy14244         23 DNAYKCHQ--CQRLIFLSANAGVHKC-EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        23 ~~~~~C~~--C~k~f~~~~~~~~~~C-~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      ++||+|++  |.|.|+...+|+-|.- ..|.....-...-..+..--...+||+|++|+++|.+...|+-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            48888875  7787777777774421 1122111111111111122345688888888888888888877753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.52  E-value=6.4e-05  Score=36.69  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=17.1

Q ss_pred             cccccCccccCChhhHHHHHhHh
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      |.|++|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            57888888888888888888775

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.51  E-value=5e-05  Score=38.50  Aligned_cols=25  Identities=36%  Similarity=0.885  Sum_probs=16.3

Q ss_pred             CcccccCccccCChhhHHHHHhHhc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      ||.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4666666666666666666666553

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.44  E-value=2e-05  Score=45.40  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             cccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCC
Q psy14244        129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       129 ~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                      ..+.+.+...+.|-.|++|+..+....+|++|+..+++.+|-
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~~   53 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKPG   53 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS--
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccCC
Confidence            445555665688999999999999999999999988888763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.40  E-value=1.2e-05  Score=39.38  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             ccCCcchhhhcChhhhhccCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h  164 (226)
                      |.|++|++.|.+...|..|+.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999998765

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.37  E-value=0.00011  Score=49.62  Aligned_cols=24  Identities=25%  Similarity=0.685  Sum_probs=20.7

Q ss_pred             CcccccCccccCChhhHHHHHhHh
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      .+.|.+|++.|.+...|..||+.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            588999999999999999999974

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.19  E-value=0.00045  Score=39.89  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=23.9

Q ss_pred             CCCCCcccccCccccCChhhHHHHHhHhcCCCC
Q psy14244         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (226)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (226)
                      ..+.|-.|++|+..+....+|++|+.+.++.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346789999999999999999999999888776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.91  E-value=0.00095  Score=32.88  Aligned_cols=24  Identities=33%  Similarity=0.772  Sum_probs=17.5

Q ss_pred             cccccCccccCChhhHHHHHhHhc
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      |.|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            467777777777777777777654

>smart00355 ZnF_C2H2 zinc finger

Probab=96.88  E-value=0.00024  Score=35.13  Aligned_cols=24  Identities=25%  Similarity=0.620  Sum_probs=21.5

Q ss_pred             ccCCcchhhhcChhhhhccCCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      |.|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999998664

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.82  E-value=0.0015  Score=55.70  Aligned_cols=137  Identities=24%  Similarity=0.367  Sum_probs=99.0

Q ss_pred             CccccCccccccCChhHHhhccC--CCCCC--CCcccc--cCccccCChhhHHHHHhHhcCCCCccCCC--CcccccccC
Q psy14244         42 GVHKCEYCHKVFDQQSSLLSHNC--PQMKP--RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQI  113 (226)
Q Consensus        42 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~  113 (226)
                      .++.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.....+..|...|++.+++.+..  |...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            36889999999999999999999  89999  999999  79999999999999999999988887765  444443322


Q ss_pred             CCCCCCC----------------------CCCCCccccccccccCC-CCCCccCCcchhhhcChhhhhccCCCCCCCCCC
Q psy14244        114 NPTSTHT----------------------PTYTKSNLAQHSCMNSH-FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       114 ~~~~~~~----------------------~~~~~~~l~~H~~~~~~-~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                      .......                      .......+..|...+.. ....+.+..|.+.|.....+..|++.|....+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence            2110000                      01122233333333331 123577899999999999999999999888877


Q ss_pred             cccchhhh
Q psy14244        171 VDNLQTQI  178 (226)
Q Consensus       171 ~c~~~~~~  178 (226)
                      .+..+...
T Consensus       448 ~~~~~~~~  455 (467)
T COG5048         448 LCSILKSF  455 (467)
T ss_pred             eecccccc
Confidence            66655543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.69  E-value=0.00085  Score=33.92  Aligned_cols=22  Identities=27%  Similarity=0.744  Sum_probs=20.8

Q ss_pred             ccCCcchhhhcChhhhhccCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999976

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.68  E-value=0.0012  Score=48.83  Aligned_cols=37  Identities=24%  Similarity=0.802  Sum_probs=33.1

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      +|.|. |+.   ....+..|.++|+++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            69998 987   66778899999999999999999999875

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.61  E-value=0.0011  Score=32.69  Aligned_cols=23  Identities=35%  Similarity=0.767  Sum_probs=17.5

Q ss_pred             cccccCccccCChhhHHHHHhHh
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      |.|++|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56788888888888888887654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.54  E-value=0.00036  Score=34.57  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.8

Q ss_pred             ccCCcchhhhcChhhhhccCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h  164 (226)
                      |.|.+|++.|.+...|..|++++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999998764

>PRK04860 hypothetical protein; Provisional

Probab=96.20  E-value=0.0011  Score=49.07  Aligned_cols=39  Identities=21%  Similarity=0.509  Sum_probs=34.0

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChh
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQ   85 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   85 (226)
                      +|.|. |+.   ....+.+|.++|+++++|.|..|+..|....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            68998 987   5678899999999999999999999886543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.09  E-value=0.0043  Score=30.25  Aligned_cols=23  Identities=39%  Similarity=0.681  Sum_probs=17.3

Q ss_pred             cccccCccccCChhhHHHHHhHhc
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      |.|+.|+.... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67889998887 888999988864

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.87  E-value=0.0072  Score=30.43  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=13.0

Q ss_pred             cccCccccccCChhHHhhccCC
Q psy14244         44 HKCEYCHKVFDQQSSLLSHNCP   65 (226)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~   65 (226)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4466666666666666666543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.60  E-value=0.00068  Score=33.20  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=17.5

Q ss_pred             ccCCcchhhhcChhhhhccCCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      |.|+.|+.... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            68999999888 889999987654

>KOG2231|consensus

Probab=95.56  E-value=0.0063  Score=54.30  Aligned_cols=117  Identities=22%  Similarity=0.417  Sum_probs=59.7

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCc---------cccCChhhHHHHHhHhcC
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCE---------KSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---------~~f~~~~~l~~H~~~h~~   96 (226)
                      +.|.+|++.|.-.  +....|..| ..|.+...|..|+..-++  .+.|..|-         ....+...|..|+..-..
T Consensus       100 ~~C~~C~~~~~~~--~~~~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~  174 (669)
T KOG2231|consen  100 HSCHICDRRFRAL--YNKKECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP  174 (669)
T ss_pred             hhcCccccchhhh--cccCCCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCC
Confidence            4577777655321  122346666 666677778888643221  23333331         112234455556554211


Q ss_pred             -CC----CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcc------hhhhcChhhhhccCCCCC
Q psy14244         97 -IR----PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRC------SQFFGDRMNLISHQCGPE  165 (226)
Q Consensus        97 -~k----~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C------~~~f~~~~~L~~H~~~h~  165 (226)
                       ++    .-.|..|...|..             ...|.+|++.++     |-|..|      +.-|....+|..|.+.+|
T Consensus       175 d~~s~rGhp~C~~C~~~fld-------------~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  175 DDESCRGHPLCKFCHERFLD-------------DDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccccccCCccchhhhhhhcc-------------HHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC
Confidence             22    1356666666665             566666665444     334444      334566666666665544

>KOG1146|consensus

Probab=95.46  E-value=0.019  Score=54.53  Aligned_cols=52  Identities=27%  Similarity=0.462  Sum_probs=40.7

Q ss_pred             CccccCccccccCChhHHhhccCCCC-------------------------CCCCcccccCccccCChhhHHHHHhH
Q psy14244         42 GVHKCEYCHKVFDQQSSLLSHNCPQM-------------------------KPRPYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        42 ~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------------~~~~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      +.++|+.|+..|.....|..||++.+                         +.++|.|..|...+.....|..|+..
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            35678888888888888888877622                         12578999999999999999999875

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=94.87  E-value=0.0075  Score=34.68  Aligned_cols=29  Identities=31%  Similarity=0.695  Sum_probs=20.1

Q ss_pred             cccCccchhHHHhhcCCCccccCcccccc
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVF   53 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~f   53 (226)
                      .|+|+.||..|..........|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCCCCceECCCCCCeE
Confidence            57788888777665555567788887654

>KOG1146|consensus

Probab=94.71  E-value=0.011  Score=55.99  Aligned_cols=100  Identities=19%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             cCccccccCChhHHhhccC-CCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCC
Q psy14244         46 CEYCHKVFDQQSSLLSHNC-PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT  124 (226)
Q Consensus        46 C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~  124 (226)
                      |..|+..+.+...+..|+. .+.-.+.|.|+.|+..|.....|..|+|+-+.+-.-  .+|...-..             
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~gq~~-------------  503 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKAGQNH-------------  503 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHhHhcccc-------------
Confidence            4455666666555555533 455668899999999999999999999984333211  333222110             


Q ss_pred             CccccccccccCCCCCCccCCcchhhhcChhhhhccCC
Q psy14244        125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus       125 ~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                       ..+.+ ......+.+||.|..|...++.+.+|..|+.
T Consensus       504 -~~~ar-g~~~~~~~~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  504 -PRLAR-GEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             -ccccc-cccccCCCCcccceeeeeeeecchHHHHHHH
Confidence             00111 1112224689999999999999999999973

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.43  E-value=0.034  Score=27.44  Aligned_cols=20  Identities=30%  Similarity=0.750  Sum_probs=12.5

Q ss_pred             cccccCccccCChhhHHHHHh
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      ..|+.||+.| ....|..|++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3577777777 5555666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.21  E-value=0.014  Score=31.21  Aligned_cols=23  Identities=26%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             CccCCcchhhhcChhhhhccCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      +|.|++|+..|.+...+..|+.+
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999999999999865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.04  E-value=0.027  Score=38.71  Aligned_cols=30  Identities=17%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|+.||+.|...+. .|-.|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLnk-~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNK-DPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCC-CCccCCCCCCccCcc
Confidence            457777777766554 666777777777655

The function of members of this family is unknown.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=93.79  E-value=0.022  Score=36.98  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=24.4

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCChh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQS   57 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~   57 (226)
                      .+|.||.|++.-..+.+...+.|..||..|....
T Consensus        34 ~~~~Cp~C~~~~VkR~a~GIW~C~kCg~~fAGga   67 (89)
T COG1997          34 AKHVCPFCGRTTVKRIATGIWKCRKCGAKFAGGA   67 (89)
T ss_pred             cCCcCCCCCCcceeeeccCeEEcCCCCCeecccc
Confidence            3577888887766666677788888888776543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.69  E-value=0.054  Score=46.10  Aligned_cols=66  Identities=29%  Similarity=0.477  Sum_probs=56.7

Q ss_pred             CCccCCCCcccccccCCCCCCCCCCCCCcccccccc--ccCCCC--CCccCC--cchhhhcChhhhhccCCCCCCCCCCc
Q psy14244         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC--MNSHFP--KPYQCD--RCSQFFGDRMNLISHQCGPEDIKPNV  171 (226)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~--~~~~~~--k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~  171 (226)
                      .++.|..|...|..             ...+..|.+  .|. ++  +|+.|+  .|++.|.+...+..|...|.+..++.
T Consensus       288 ~~~~~~~~~~~~s~-------------~~~l~~~~~~~~h~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         288 LPIKSKQCNISFSR-------------SSPLTRHLRSVNHS-GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             cCCCCccccCCccc-------------cccccccccccccc-cccCCceeeeccCCCccccccccccCCcccccCCCccc
Confidence            36888999999988             888999998  566 67  999999  89999999999999999999998877


Q ss_pred             ccchhh
Q psy14244        172 DNLQTQ  177 (226)
Q Consensus       172 c~~~~~  177 (226)
                      +.....
T Consensus       354 ~~~~~~  359 (467)
T COG5048         354 EKLLNS  359 (467)
T ss_pred             cccccC
Confidence            765544

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.66  E-value=0.033  Score=33.33  Aligned_cols=50  Identities=24%  Similarity=0.412  Sum_probs=26.9

Q ss_pred             cccCccchhHHHhhcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCcc
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEK   79 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   79 (226)
                      +=.|..||...........|.|+.||..--.+..--+     .-..+|.|+.||+
T Consensus         9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CR-----k~g~~Y~Cp~CGF   58 (61)
T COG2888           9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCR-----KLGNPYRCPKCGF   58 (61)
T ss_pred             CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHH-----HcCCceECCCcCc
Confidence            3457777766655555666777777754333222111     1124566666664

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=93.65  E-value=0.042  Score=29.12  Aligned_cols=10  Identities=30%  Similarity=1.055  Sum_probs=5.2

Q ss_pred             CCccCCCCcc
Q psy14244         98 RPFKCTTCDK  107 (226)
Q Consensus        98 k~~~C~~C~~  107 (226)
                      .++.|+.|+.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            4455555543

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.53  E-value=0.058  Score=28.71  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=18.8

Q ss_pred             CcccccCccccCChhhHHHHHhH
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      +|.|++|+..|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57788888888888888888765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785|consensus

Probab=93.47  E-value=0.035  Score=45.99  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCC----------------------CCccCCcch---hhhcC
Q psy14244         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP----------------------KPYQCDRCS---QFFGD  153 (226)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~----------------------k~~~C~~C~---~~f~~  153 (226)
                      |-.|.+|++.+.+             -.....|+..+|+.-                      ..+.|-.|+   +.|..
T Consensus       166 Pt~CLfC~~~~k~-------------~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~s  232 (390)
T KOG2785|consen  166 PTDCLFCDKKSKS-------------LEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSS  232 (390)
T ss_pred             CcceeecCCCccc-------------HHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccc
Confidence            4567777777766             556677877777431                      348899999   99999


Q ss_pred             hhhhhccCC
Q psy14244        154 RMNLISHQC  162 (226)
Q Consensus       154 ~~~L~~H~~  162 (226)
                      ....+.||.
T Consensus       233 leavr~HM~  241 (390)
T KOG2785|consen  233 LEAVRAHMR  241 (390)
T ss_pred             cHHHHHHHh
Confidence            999999995

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=93.07  E-value=0.065  Score=32.18  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=15.3

Q ss_pred             cccCccchhHHHhhcCCCccccCccccc
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~   52 (226)
                      +..|..||....-......|.|+.||..
T Consensus         7 ~~~CtSCg~~i~~~~~~~~F~CPnCG~~   34 (59)
T PRK14890          7 PPKCTSCGIEIAPREKAVKFLCPNCGEV   34 (59)
T ss_pred             CccccCCCCcccCCCccCEeeCCCCCCe
Confidence            4456666655544444455666666654

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=93.07  E-value=0.063  Score=28.66  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhh
Q psy14244         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (226)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~  150 (226)
                      .|.|..||..+..                          .+.|..|++||..
T Consensus         2 ~~~C~~CG~i~~g--------------------------~~~p~~CP~Cg~~   27 (34)
T cd00729           2 VWVCPVCGYIHEG--------------------------EEAPEKCPICGAP   27 (34)
T ss_pred             eEECCCCCCEeEC--------------------------CcCCCcCcCCCCc
Confidence            4889999987753                          2357799999963

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=92.99  E-value=0.049  Score=27.14  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=13.3

Q ss_pred             cCccchhHHHhhcCCCccccCccccccC
Q psy14244         27 KCHQCQRLIFLSANAGVHKCEYCHKVFD   54 (226)
Q Consensus        27 ~C~~C~k~f~~~~~~~~~~C~~C~~~f~   54 (226)
                      .||.|++......    -.|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~----~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESA----KFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhc----CcCCCCCCCCc
Confidence            3666766543322    24677776663

Several members are annotated as putative helicases.

>KOG2231|consensus

Probab=92.87  E-value=0.094  Score=47.10  Aligned_cols=107  Identities=21%  Similarity=0.334  Sum_probs=63.0

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCCCccCCCCccc---ccccCCCCCCCCCCCCCccccccccccCCCCC----CccCC
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKS---FVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK----PYQCD  145 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~---f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k----~~~C~  145 (226)
                      .|..| -.|.+...|+.|++.-+  +.+.|..|-..   |..       ..+.++...|..|+..--.+++    --.|.
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~-------e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~  186 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFIN-------ERKLYTRAELNLHLMFGDPDDESCRGHPLCK  186 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhh--hhhccccccccceeeee-------eeehehHHHHHHHHhcCCCccccccCCccch
Confidence            35555 45568899999996533  23566665432   322       1222336778888654332222    24699


Q ss_pred             cchhhhcChhhhhccCCCCCCCCCCc--ccchhhhccchhHHHHHH
Q psy14244        146 RCSQFFGDRMNLISHQCGPEDIKPNV--DNLQTQISNNDEQAKIKM  189 (226)
Q Consensus       146 ~C~~~f~~~~~L~~H~~~h~~~~~~~--c~~~~~~~~~~~~~~~~~  189 (226)
                      .|...|.....|.+|++.++..--+.  -..+.....+-+.+.+|-
T Consensus       187 ~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~Hf  232 (669)
T KOG2231|consen  187 FCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHF  232 (669)
T ss_pred             hhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHh
Confidence            99999999999999998766431111  122334455555555553

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.21  E-value=0.033  Score=32.79  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |+..+.|+.||..|....+..+|....++-
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            677899999999999999999998765543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.03  E-value=0.041  Score=42.86  Aligned_cols=15  Identities=20%  Similarity=0.450  Sum_probs=9.6

Q ss_pred             CCcccCccchhHHHh
Q psy14244         23 DNAYKCHQCQRLIFL   37 (226)
Q Consensus        23 ~~~~~C~~C~k~f~~   37 (226)
                      ++.+.||+|++.|..
T Consensus         3 ~k~~~CPvC~~~F~~   17 (214)
T PF09986_consen    3 DKKITCPVCGKEFKT   17 (214)
T ss_pred             CCceECCCCCCeeee
Confidence            355677777776654

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=91.81  E-value=0.049  Score=31.52  Aligned_cols=29  Identities=31%  Similarity=0.708  Sum_probs=19.3

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccc
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~   52 (226)
                      ..|+|..||+.|..........|++||..
T Consensus         5 ~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVELDQETRGIRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeehhhccCceeCCCCCcE
Confidence            35777777777755555566677777653

>KOG2893|consensus

Probab=91.75  E-value=0.047  Score=42.37  Aligned_cols=46  Identities=30%  Similarity=0.749  Sum_probs=35.0

Q ss_pred             ccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHH-HhHh
Q psy14244         45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIH   94 (226)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h   94 (226)
                      +|-+|.+.|++..-|..|++.    +-|+|.+|.+..-+--.|..| |.+|
T Consensus        12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhh
Confidence            588999999998888888664    458899998877666667666 4444

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.68  E-value=0.26  Score=33.95  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=45.6

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCChhHHhhcc------CCCC------CCCCcccccCccccCChhhHHHHHhH
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHN------CPQM------KPRPYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~------~~h~------~~~~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      |.|+.|+-.    .-.-|-.|++||-...+...|.+-.      ..-.      ....-.|--|...|........  ..
T Consensus         2 Y~CPrC~sk----vC~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~   75 (112)
T TIGR00622         2 YFCPQCRAK----VCELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DE   75 (112)
T ss_pred             ccCCCCCCC----ccCCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cc
Confidence            678888642    2223567888888888777776531      0000      0011248888888865432110  00


Q ss_pred             hcCCCCccCCCCcccccc
Q psy14244         94 HSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        94 h~~~k~~~C~~C~~~f~~  111 (226)
                      -.....|.|+.|...|-.
T Consensus        76 ~~~~~~y~C~~C~~~FC~   93 (112)
T TIGR00622        76 LKDSHRYVCAVCKNVFCV   93 (112)
T ss_pred             cccccceeCCCCCCcccc
Confidence            123446888888888865

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.14  E-value=0.047  Score=44.67  Aligned_cols=17  Identities=24%  Similarity=0.403  Sum_probs=8.2

Q ss_pred             cccccCChhHHhhccCC
Q psy14244         49 CHKVFDQQSSLLSHNCP   65 (226)
Q Consensus        49 C~~~f~~~~~l~~H~~~   65 (226)
                      |.........|..|.+.
T Consensus       159 c~~~C~~~k~lk~H~K~  175 (493)
T COG5236         159 CHRRCGSLKELKKHYKA  175 (493)
T ss_pred             hhhhhhhHHHHHHHHHh
Confidence            44444444555555443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.73  E-value=0.13  Score=40.11  Aligned_cols=13  Identities=15%  Similarity=0.450  Sum_probs=10.5

Q ss_pred             ccCCcchhhhcCh
Q psy14244        142 YQCDRCSQFFGDR  154 (226)
Q Consensus       142 ~~C~~C~~~f~~~  154 (226)
                      ..||.||.+|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            4699999988754

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.71  E-value=0.41  Score=33.00  Aligned_cols=79  Identities=19%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhc--CCCCc------------cCCCCcccccccCCCCCCCCCCCCCccccccccc
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHS--GIRPF------------KCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM  134 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~k~~------------~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~  134 (226)
                      +-|-.|++||-.......|.+-  -|+  ..++|            .|-.|...|..             ......   .
T Consensus        13 ~LP~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~-------------~~~~~~---~   74 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPK-------------PPVSPF---D   74 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCcCCCCCC-------------cccccc---c
Confidence            3577999999988888777543  122  12222            38888888875             211000   0


Q ss_pred             cCCCCCCccCCcchhhhcChhhhhccCCCCC
Q psy14244        135 NSHFPKPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       135 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      .......|.|+.|...|-..-++-.|...|.
T Consensus        75 ~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        75 ELKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             ccccccceeCCCCCCccccccchhhhhhccC
Confidence            0113458999999999999999999976664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.70  E-value=0.15  Score=35.10  Aligned_cols=31  Identities=26%  Similarity=0.643  Sum_probs=25.0

Q ss_pred             ccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChh
Q psy14244        100 FKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM  155 (226)
Q Consensus       100 ~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~  155 (226)
                      ..|+.||+.|..                |         +..|..|++||..|.-..
T Consensus        10 R~Cp~CG~kFYD----------------L---------nk~PivCP~CG~~~~~~~   40 (108)
T PF09538_consen   10 RTCPSCGAKFYD----------------L---------NKDPIVCPKCGTEFPPEP   40 (108)
T ss_pred             ccCCCCcchhcc----------------C---------CCCCccCCCCCCccCccc
Confidence            689999999975                1         246889999999998763

The function of members of this family is unknown.

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.66  E-value=0.039  Score=36.31  Aligned_cols=33  Identities=27%  Similarity=0.630  Sum_probs=22.4

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|.|+.||+.-..+.....+.|..|++.|..-
T Consensus        34 ~ky~Cp~Cgk~~vkR~a~GIW~C~~C~~~~AGG   66 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRVATGIWKCKKCGKKFAGG   66 (90)
T ss_dssp             S-BEESSSSSSEEEEEETTEEEETTTTEEEE-B
T ss_pred             CCCcCCCCCCceeEEeeeEEeecCCCCCEEeCC
Confidence            357788888766666666678888888877543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=90.58  E-value=0.081  Score=30.04  Aligned_cols=25  Identities=28%  Similarity=0.640  Sum_probs=13.0

Q ss_pred             ccCccchhHHHhhcCCCccccCcccc
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHK   51 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~   51 (226)
                      |.|..||..|... ...+..|+.||.
T Consensus         3 Y~C~~Cg~~~~~~-~~~~irC~~CG~   27 (44)
T smart00659        3 YICGECGRENEIK-SKDVVRCRECGY   27 (44)
T ss_pred             EECCCCCCEeecC-CCCceECCCCCc
Confidence            5566666555443 233445555554

present in RNA polymerase I, II and III

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.25  E-value=0.13  Score=30.34  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhc
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      .-.|+..+.||-||..|.....+.+|+...+
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            4456777889999999988888888877644

>TIGR00280 L37a ribosomal protein L37a

Probab=90.16  E-value=0.068  Score=35.24  Aligned_cols=34  Identities=21%  Similarity=0.551  Sum_probs=24.9

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCChh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQS   57 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~   57 (226)
                      ..|.|+.|++.-..+....++.|..|++.|....
T Consensus        34 a~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA   67 (91)
T TIGR00280        34 AKYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGA   67 (91)
T ss_pred             cCccCCCCCCCceEEEeeEEEEcCCCCCEEeCCc
Confidence            3588888887655666667888888888886543

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=90.07  E-value=0.076  Score=34.99  Aligned_cols=34  Identities=21%  Similarity=0.530  Sum_probs=23.4

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCChh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQS   57 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~   57 (226)
                      ..|.|+.|++.-..+....++.|..|++.|....
T Consensus        35 a~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA   68 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGA   68 (90)
T ss_pred             CCccCCCCCCCceeeeeeEEEEcCCCCCEEeCCc
Confidence            3577888876555555566778888888776543

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=89.98  E-value=0.18  Score=37.44  Aligned_cols=24  Identities=21%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchh
Q psy14244         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQ  149 (226)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~  149 (226)
                      .|.|++||..+.                           ++.|-.||+||.
T Consensus       134 ~~vC~vCGy~~~---------------------------ge~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYTHE---------------------------GEAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCccc---------------------------CCCCCcCCCCCC
Confidence            699999998764                           478999999994

>PRK10350 hypothetical protein; Provisional

Probab=89.86  E-value=1.3  Score=30.95  Aligned_cols=15  Identities=40%  Similarity=0.364  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHh
Q psy14244        209 QQQQQQQQQQQQQQQ  223 (226)
Q Consensus       209 ~~~~~~~~~~~~~~~  223 (226)
                      .+.+.+.+|++.|.|
T Consensus        58 lq~Qtq~qQQ~LQ~Q   72 (145)
T PRK10350         58 LKTQTRLQQQHLQNQ   72 (145)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333444444444

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.47  E-value=0.18  Score=41.45  Aligned_cols=92  Identities=23%  Similarity=0.366  Sum_probs=59.0

Q ss_pred             ccccc--CccccCChhhHHHHHhHhcCCCCccCCCCc---ccccccCCCCCCCCCCCCCccccccccccCC--CCC-Ccc
Q psy14244         72 YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCD---KSFVNQINPTSTHTPTYTKSNLAQHSCMNSH--FPK-PYQ  143 (226)
Q Consensus        72 ~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~---~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~--~~k-~~~  143 (226)
                      |.||.  |.........|..|.++.++.  +.|..|-   +.|..       .+...+...|..|...-..  |-| --.
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~-------E~~lF~~~~Lr~H~~~G~~e~GFKGHP~  222 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWN-------EIRLFRSSTLRDHKNGGLEEEGFKGHPL  222 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCcc-------ceeeeecccccccccCCccccCcCCCch
Confidence            77875  777777788899999885543  6777774   34433       2223335667777543221  112 236


Q ss_pred             CCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        144 CDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       144 C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      |..|..-|-.-..|..|++.-+. +-++|.
T Consensus       223 C~FC~~~FYdDDEL~~HcR~~HE-~ChICD  251 (493)
T COG5236         223 CIFCKIYFYDDDELRRHCRLRHE-ACHICD  251 (493)
T ss_pred             hhhccceecChHHHHHHHHhhhh-hhhhhh
Confidence            99999999999999999876553 334443

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=89.15  E-value=0.14  Score=26.91  Aligned_cols=25  Identities=24%  Similarity=0.620  Sum_probs=10.7

Q ss_pred             ccCccchhHHHhhcCCCccccCcccc
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHK   51 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~   51 (226)
                      |.|..||..+.... ..+-+|+.||.
T Consensus         1 Y~C~~Cg~~~~~~~-~~~irC~~CG~   25 (32)
T PF03604_consen    1 YICGECGAEVELKP-GDPIRCPECGH   25 (32)
T ss_dssp             EBESSSSSSE-BST-SSTSSBSSSS-
T ss_pred             CCCCcCCCeeEcCC-CCcEECCcCCC
Confidence            44555555544322 22335555553

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=88.96  E-value=0.19  Score=35.20  Aligned_cols=30  Identities=10%  Similarity=0.125  Sum_probs=18.3

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|+.||+.|...+. .|-.|+.||..|...
T Consensus        10 r~Cp~cg~kFYDLnk-~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLNR-RPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccCC-CCccCCCcCCccCcc
Confidence            457777766655443 566677777666544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=88.90  E-value=0.09  Score=34.64  Aligned_cols=34  Identities=21%  Similarity=0.469  Sum_probs=25.2

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCChh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQS   57 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~   57 (226)
                      ..|.|+.|++.-..+....++.|..|++.|....
T Consensus        35 a~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA   68 (90)
T PRK03976         35 AKHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGA   68 (90)
T ss_pred             cCccCCCCCCCceEEEEEEEEEcCCCCCEEeCCc
Confidence            3588888887666666677888888888886543

>KOG2482|consensus

Probab=88.78  E-value=0.13  Score=42.15  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             ccCCcchhhhcChhhhhccCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      -.|-.|.-.|-....|..||.
T Consensus       335 ~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  335 SRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             cccccccccccCcchhhhhcc
Confidence            468889999999999999985

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.46  E-value=0.16  Score=45.78  Aligned_cols=79  Identities=20%  Similarity=0.442  Sum_probs=55.5

Q ss_pred             ccCccchhHHHhhcCCC---cc-ccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCcc
Q psy14244         26 YKCHQCQRLIFLSANAG---VH-KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK  101 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~---~~-~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (226)
                      -.|+.|-+.+.+.++-.   || .|..||-.|+-...|---+..-+-...-.|+.|.+.|.+..+-    |-|.  .|..
T Consensus       102 a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nR----RfHA--Qp~a  175 (750)
T COG0068         102 ATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNR----RFHA--QPIA  175 (750)
T ss_pred             hhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcccc----cccc--cccc
Confidence            46999998887766644   44 5999999998877776543322223344799999999888663    3343  4689


Q ss_pred             CCCCccccc
Q psy14244        102 CTTCDKSFV  110 (226)
Q Consensus       102 C~~C~~~f~  110 (226)
                      |+.||-...
T Consensus       176 Cp~CGP~~~  184 (750)
T COG0068         176 CPKCGPHLF  184 (750)
T ss_pred             CcccCCCeE
Confidence            999996543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.44  E-value=0.22  Score=34.33  Aligned_cols=27  Identities=15%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             CCccC----CcchhhhcChhhhhccCCCCCC
Q psy14244        140 KPYQC----DRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       140 k~~~C----~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      ..|.|    +.|++.+.+...+..|++.++|
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            35899    9999999999999999987765

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=88.13  E-value=0.21  Score=24.32  Aligned_cols=6  Identities=33%  Similarity=1.503  Sum_probs=2.3

Q ss_pred             ccCccc
Q psy14244         26 YKCHQC   31 (226)
Q Consensus        26 ~~C~~C   31 (226)
                      |.||.|
T Consensus        17 f~CPnC   22 (24)
T PF07754_consen   17 FPCPNC   22 (24)
T ss_pred             EeCCCC
Confidence            333333

It is likely to bind zinc via its four well-conserved cysteine residues.

>KOG2186|consensus

Probab=87.96  E-value=0.24  Score=38.92  Aligned_cols=47  Identities=21%  Similarity=0.477  Sum_probs=39.6

Q ss_pred             CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCC
Q psy14244         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      -|.|..||.+..              +..+.+|+.+.+  ..-|.|-.||++|.. .++..|..
T Consensus         3 ~FtCnvCgEsvK--------------Kp~vekH~srCr--n~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVK--------------KPQVEKHMSRCR--NAYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhcc--------------ccchHHHHHhcc--CCeeEEeeccccccc-chhhhhhh
Confidence            378999999987              788999987776  378999999999998 67888864

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.17  E-value=0.15  Score=28.17  Aligned_cols=10  Identities=30%  Similarity=1.135  Sum_probs=4.7

Q ss_pred             ccCccchhHH
Q psy14244         26 YKCHQCQRLI   35 (226)
Q Consensus        26 ~~C~~C~k~f   35 (226)
                      |+|+.||..|
T Consensus         6 y~C~~Cg~~f   15 (41)
T smart00834        6 YRCEDCGHTF   15 (41)
T ss_pred             EEcCCCCCEE
Confidence            4454554443

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=86.95  E-value=0.52  Score=32.40  Aligned_cols=25  Identities=20%  Similarity=0.499  Sum_probs=20.9

Q ss_pred             ccc----ccCccccCChhhHHHHHhHhcC
Q psy14244         72 YKC----DTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        72 ~~C----~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      |.|    +.|+..+.+...+..|.+.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            788    8899999999999999887654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=86.64  E-value=0.26  Score=36.21  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=16.1

Q ss_pred             CCccCCcchhhhcChhhhhcc
Q psy14244        140 KPYQCDRCSQFFGDRMNLISH  160 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H  160 (226)
                      +.+.|+.||++|.....+..=
T Consensus        27 ~~~~c~~c~~~f~~~e~~~~~   47 (154)
T PRK00464         27 RRRECLACGKRFTTFERVELV   47 (154)
T ss_pred             eeeeccccCCcceEeEeccCc
Confidence            348999999999886655543

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=86.46  E-value=0.29  Score=32.07  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=12.7

Q ss_pred             cccCccchhHHHhhcCCCccccCccc
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCH   50 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~   50 (226)
                      |-.|..||..|.+...-.|-+|+.|.
T Consensus        58 Pa~CkkCGfef~~~~ik~pSRCP~CK   83 (97)
T COG3357          58 PARCKKCGFEFRDDKIKKPSRCPKCK   83 (97)
T ss_pred             ChhhcccCccccccccCCcccCCcch
Confidence            34455555555553333345555553

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=86.27  E-value=0.32  Score=36.06  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=14.2

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCc
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCE   78 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   78 (226)
                      .|.|++||..             +-++.|-.||+||
T Consensus       134 ~~vC~vCGy~-------------~~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCCCCCcCCCCC
Confidence            5677777654             2345566777776

>KOG2186|consensus

Probab=86.23  E-value=0.32  Score=38.22  Aligned_cols=46  Identities=17%  Similarity=0.428  Sum_probs=28.4

Q ss_pred             cccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHh
Q psy14244         44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      |.|..||....-. .+..|+..-++ ..|.|..|++.|.. ..+..|..
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            4566676665543 35556655555 56777777777776 55666644

>PRK04023 DNA polymerase II large subunit; Validated

Probab=86.20  E-value=0.57  Score=44.07  Aligned_cols=22  Identities=23%  Similarity=0.644  Sum_probs=14.4

Q ss_pred             cccCccchhHHHhhcCCCccccCccccc
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~   52 (226)
                      ...|+.||...      ..+.|+.||..
T Consensus       626 ~RfCpsCG~~t------~~frCP~CG~~  647 (1121)
T PRK04023        626 RRKCPSCGKET------FYRRCPFCGTH  647 (1121)
T ss_pred             CccCCCCCCcC------CcccCCCCCCC
Confidence            45688887652      33577777765

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=85.80  E-value=0.5  Score=34.93  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=26.9

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCccccc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (226)
                      ....+...|.|+.|+..|+....+.         ..|.|+.||....
T Consensus       102 ~~e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       102 EFETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD  139 (158)
T ss_pred             hhccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence            3344556788888888887777764         2588888887654

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.68  E-value=0.19  Score=36.71  Aligned_cols=39  Identities=18%  Similarity=0.407  Sum_probs=26.1

Q ss_pred             CCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccC
Q psy14244         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFT   82 (226)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   82 (226)
                      +-..|.|+.|+..|.....+..- .  . +..|.|+.||....
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~-d--~-~~~f~Cp~Cg~~l~  134 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLL-D--M-DGTFTCPRCGEELE  134 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhc-C--C-CCcEECCCCCCEEE
Confidence            33478999999998865554431 1  1 34499999997653

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=85.19  E-value=0.58  Score=25.39  Aligned_cols=32  Identities=25%  Similarity=0.752  Sum_probs=14.7

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCCCccCCCCcccc
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF  109 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f  109 (226)
                      .|+.|+..|.-...     ++..+.....|+.|+..|
T Consensus         4 ~CP~C~~~f~v~~~-----~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDD-----KLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHH-----HcccCCcEEECCCCCcEe
Confidence            45555555544332     111223345555555554

>PF14353 CpXC: CpXC protein

Probab=84.85  E-value=0.22  Score=35.34  Aligned_cols=38  Identities=21%  Similarity=0.442  Sum_probs=23.9

Q ss_pred             ccCccchhHHHhh-------------------cCCCccccCccccccCChhHHhhcc
Q psy14244         26 YKCHQCQRLIFLS-------------------ANAGVHKCEYCHKVFDQQSSLLSHN   63 (226)
Q Consensus        26 ~~C~~C~k~f~~~-------------------~~~~~~~C~~C~~~f~~~~~l~~H~   63 (226)
                      ..||.|+..|...                   ..+-.|.|+.||..|.-...+.-|-
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D   58 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHD   58 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEc
Confidence            4688888766421                   2233677888888877666555553

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=84.57  E-value=0.54  Score=25.53  Aligned_cols=10  Identities=20%  Similarity=0.936  Sum_probs=5.3

Q ss_pred             ccCCCCcccc
Q psy14244        100 FKCTTCDKSF  109 (226)
Q Consensus       100 ~~C~~C~~~f  109 (226)
                      ..|+.|+..|
T Consensus        26 v~C~~C~~~~   35 (38)
T TIGR02098        26 VRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEE
Confidence            4555555544

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer

Probab=84.49  E-value=0.32  Score=25.88  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=12.8

Q ss_pred             cCccchhHHHhhcCCCccccCcccc
Q psy14244         27 KCHQCQRLIFLSANAGVHKCEYCHK   51 (226)
Q Consensus        27 ~C~~C~k~f~~~~~~~~~~C~~C~~   51 (226)
                      .|.+|++.|..+.-+..|.+++|.+
T Consensus         5 ~C~eC~~~f~dSyL~~~F~~~VCD~   29 (34)
T PF01286_consen    5 KCDECGKPFMDSYLLNNFDLPVCDK   29 (34)
T ss_dssp             E-TTT--EES-SSCCCCTS-S--TT
T ss_pred             hHhHhCCHHHHHHHHHhCCcccccc
Confidence            5778888887777777776666653

Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.

>KOG2482|consensus

Probab=84.48  E-value=0.62  Score=38.31  Aligned_cols=79  Identities=25%  Similarity=0.458  Sum_probs=58.8

Q ss_pred             ccccCccccccCChhHHhhccCCCCCC--C--------------------------------------------------
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKP--R--------------------------------------------------   70 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~--~--------------------------------------------------   70 (226)
                      .+.|-+|.+.|.++..|+.||+.....  .                                                  
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            568999999999999999998532211  0                                                  


Q ss_pred             --C--cccccCccccCChhhHHHHHhHhcC---------------------------CCCccCCCCcccccccCCCCCCC
Q psy14244         71 --P--YKCDTCEKSFTNSQNLNTHQLIHSG---------------------------IRPFKCTTCDKSFVNQINPTSTH  119 (226)
Q Consensus        71 --~--~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------~k~~~C~~C~~~f~~~~~~~~~~  119 (226)
                        +  -.|-.|.....+...|..||++-+.                           .+.-.|-.|.-.|..        
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~--------  346 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWK--------  346 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccC--------
Confidence              1  3799999999989999999997322                           112357788888887        


Q ss_pred             CCCCCCccccccccc
Q psy14244        120 TPTYTKSNLAQHSCM  134 (226)
Q Consensus       120 ~~~~~~~~l~~H~~~  134 (226)
                           ...|..|+..
T Consensus       347 -----e~~l~~hm~e  356 (423)
T KOG2482|consen  347 -----EPGLLIHMVE  356 (423)
T ss_pred             -----cchhhhhccc
Confidence                 7788888754

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=84.39  E-value=0.31  Score=35.81  Aligned_cols=9  Identities=44%  Similarity=1.243  Sum_probs=3.3

Q ss_pred             cCCCCcccc
Q psy14244        101 KCTTCDKSF  109 (226)
Q Consensus       101 ~C~~C~~~f  109 (226)
                      .|+.||+.|
T Consensus        30 ~c~~c~~~f   38 (154)
T PRK00464         30 ECLACGKRF   38 (154)
T ss_pred             eccccCCcc
Confidence            333333333

>KOG4173|consensus

Probab=84.22  E-value=0.24  Score=37.71  Aligned_cols=66  Identities=26%  Similarity=0.610  Sum_probs=45.2

Q ss_pred             ccccCc--cccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhH-h---------cCCCCccCCC--Cccc
Q psy14244         43 VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI-H---------SGIRPFKCTT--CDKS  108 (226)
Q Consensus        43 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~k~~~C~~--C~~~  108 (226)
                      .+.|.+  |...|.+...+..|..+-++   -.|.+|.+.|++...|..|+.. |         -|..-|.|.+  |+..
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            345765  66777777777776544333   2688888888888888888765 3         2344578854  8888


Q ss_pred             ccc
Q psy14244        109 FVN  111 (226)
Q Consensus       109 f~~  111 (226)
                      |.+
T Consensus       156 FkT  158 (253)
T KOG4173|consen  156 FKT  158 (253)
T ss_pred             hhh
Confidence            876

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=83.93  E-value=0.65  Score=35.05  Aligned_cols=36  Identities=19%  Similarity=0.540  Sum_probs=24.6

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCccccc
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (226)
                      -.....|.|+.|+..|+....+.         ..|.|+.||....
T Consensus       112 e~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~  147 (178)
T PRK06266        112 EENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE  147 (178)
T ss_pred             ccCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence            33445688888888887766553         2588888887654

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=83.93  E-value=0.72  Score=32.40  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=26.1

Q ss_pred             ccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhh
Q psy14244        100 FKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLI  158 (226)
Q Consensus       100 ~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~  158 (226)
                      ..|+.||+.|..                |         +..|..|++||..|.....+.
T Consensus        10 r~Cp~cg~kFYD----------------L---------nk~p~vcP~cg~~~~~~~~~~   43 (129)
T TIGR02300        10 RICPNTGSKFYD----------------L---------NRRPAVSPYTGEQFPPEEALK   43 (129)
T ss_pred             ccCCCcCccccc----------------c---------CCCCccCCCcCCccCcchhhc
Confidence            689999999965                1         346889999999987664444

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=83.65  E-value=0.38  Score=28.20  Aligned_cols=10  Identities=40%  Similarity=1.354  Sum_probs=4.1

Q ss_pred             cccccCcccc
Q psy14244         72 YKCDTCEKSF   81 (226)
Q Consensus        72 ~~C~~C~~~f   81 (226)
                      |.|..||..|
T Consensus         6 y~C~~Cg~~f   15 (52)
T TIGR02605         6 YRCTACGHRF   15 (52)
T ss_pred             EEeCCCCCEe
Confidence            3344444433

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>KOG2893|consensus

Probab=82.88  E-value=0.68  Score=36.13  Aligned_cols=35  Identities=31%  Similarity=0.685  Sum_probs=29.1

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      -|-+|.+.|.....|..|.+.    |.|+|.+|-+..-+
T Consensus        12 wcwycnrefddekiliqhqka----khfkchichkkl~s   46 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFS   46 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----ccceeeeehhhhcc
Confidence            488999999999999888765    45999999877554

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=82.70  E-value=0.82  Score=24.65  Aligned_cols=12  Identities=17%  Similarity=0.750  Sum_probs=5.9

Q ss_pred             ccccCccccCCh
Q psy14244         73 KCDTCEKSFTNS   84 (226)
Q Consensus        73 ~C~~C~~~f~~~   84 (226)
                      .|+.|+..|.-.
T Consensus         4 ~Cp~C~~~y~i~   15 (36)
T PF13717_consen    4 TCPNCQAKYEID   15 (36)
T ss_pred             ECCCCCCEEeCC
Confidence            455555555443

>PHA00626 hypothetical protein

Probab=82.67  E-value=0.45  Score=28.16  Aligned_cols=12  Identities=25%  Similarity=0.562  Sum_probs=6.0

Q ss_pred             CcccccCccccC
Q psy14244         71 PYKCDTCEKSFT   82 (226)
Q Consensus        71 ~~~C~~C~~~f~   82 (226)
                      .|.|+.||..|+
T Consensus        23 rYkCkdCGY~ft   34 (59)
T PHA00626         23 DYVCCDCGYNDS   34 (59)
T ss_pred             ceEcCCCCCeec
Confidence            455555555443

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=82.47  E-value=0.37  Score=29.06  Aligned_cols=41  Identities=24%  Similarity=0.555  Sum_probs=25.5

Q ss_pred             CCCccccc--CccccCChhhHHHHHhHhcCCCCccCCC----Cccccc
Q psy14244         69 PRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT----CDKSFV  110 (226)
Q Consensus        69 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~----C~~~f~  110 (226)
                      ..+..|+.  |...+. ...|..|+...-..++..|++    |+..+.
T Consensus         7 ~~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~   53 (60)
T PF02176_consen    7 FRPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVP   53 (60)
T ss_dssp             TSEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred             CCEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence            45567877  444443 557888888777778888888    888776

>KOG2907|consensus

Probab=82.22  E-value=0.4  Score=32.76  Aligned_cols=30  Identities=17%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCC
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~   55 (226)
                      .=|+.||-.....+......|..|+..+..
T Consensus         8 ~FC~~CG~ll~~~~~~~~~~C~~Ck~~~~v   37 (116)
T KOG2907|consen    8 DFCSDCGSLLEEPSAQSTVLCIRCKIEYPV   37 (116)
T ss_pred             chhhhhhhhcccccccCceEeccccccCCH
Confidence            347788877666666666668888776653

>KOG0402|consensus

Probab=82.13  E-value=0.53  Score=30.28  Aligned_cols=32  Identities=28%  Similarity=0.639  Sum_probs=25.9

Q ss_pred             cccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      .|.|+.||+.---+.....+.|..|.+.+...
T Consensus        36 ky~CsfCGK~~vKR~AvGiW~C~~C~kv~agg   67 (92)
T KOG0402|consen   36 KYTCSFCGKKTVKRKAVGIWKCGSCKKVVAGG   67 (92)
T ss_pred             hhhhhhcchhhhhhhceeEEecCCccceeccc
Confidence            48899999887777788888899898887653

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=81.94  E-value=1  Score=43.44  Aligned_cols=52  Identities=23%  Similarity=0.653  Sum_probs=30.3

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      ++|+.||.....      ..|+.||...               +.+|.|+.||.......         ++  ...|+.|
T Consensus       668 rkCPkCG~~t~~------~fCP~CGs~t---------------e~vy~CPsCGaev~~de---------s~--a~~CP~C  715 (1337)
T PRK14714        668 RRCPSCGTETYE------NRCPDCGTHT---------------EPVYVCPDCGAEVPPDE---------SG--RVECPRC  715 (1337)
T ss_pred             EECCCCCCcccc------ccCcccCCcC---------------CCceeCccCCCccCCCc---------cc--cccCCCC
Confidence            778888863211      2688887663               22467888876543311         11  3467788


Q ss_pred             cccc
Q psy14244        106 DKSF  109 (226)
Q Consensus       106 ~~~f  109 (226)
                      +...
T Consensus       716 Gtpl  719 (1337)
T PRK14714        716 DVEL  719 (1337)
T ss_pred             CCcc
Confidence            7544

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=81.89  E-value=0.42  Score=28.40  Aligned_cols=28  Identities=21%  Similarity=0.548  Sum_probs=12.0

Q ss_pred             ccCccchhHHHhhcCC--CccccCcccccc
Q psy14244         26 YKCHQCQRLIFLSANA--GVHKCEYCHKVF   53 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~--~~~~C~~C~~~f   53 (226)
                      |+|+.||..+......  ....|+.||..+
T Consensus         3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGael   32 (54)
T TIGR01206         3 FECPDCGAEIELENPELGELVICDECGAEL   32 (54)
T ss_pred             cCCCCCCCEEecCCCccCCEEeCCCCCCEE
Confidence            4555555544322111  133455555443

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=81.74  E-value=1.2  Score=41.03  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             CccccccccccCCCCCCccCCcchhh
Q psy14244        125 KSNLAQHSCMNSHFPKPYQCDRCSQF  150 (226)
Q Consensus       125 ~~~l~~H~~~~~~~~k~~~C~~C~~~  150 (226)
                      ...|..|.+.+. ...|..|+.||..
T Consensus       460 ~~~L~CH~Cg~~-~~~p~~Cp~Cgs~  484 (730)
T COG1198         460 TGQLRCHYCGYQ-EPIPQSCPECGSE  484 (730)
T ss_pred             CCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence            456777777666 5778889999854

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.67  E-value=1  Score=32.84  Aligned_cols=43  Identities=19%  Similarity=0.466  Sum_probs=29.5

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      .-.....|.|+.|+..|.....+..   .. ....|.|+.||.....
T Consensus        93 ~e~~~~~Y~Cp~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l~~  135 (147)
T smart00531       93 DETNNAYYKCPNCQSKYTFLEANQL---LD-MDGTFTCPRCGEELEE  135 (147)
T ss_pred             cccCCcEEECcCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEEEE
Confidence            3345567999999999986554432   11 2344999999988653

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=81.25  E-value=0.34  Score=27.13  Aligned_cols=11  Identities=36%  Similarity=0.951  Sum_probs=6.3

Q ss_pred             cccCccccccC
Q psy14244         44 HKCEYCHKVFD   54 (226)
Q Consensus        44 ~~C~~C~~~f~   54 (226)
                      |+|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (42)
T PF09723_consen    6 YRCEECGHEFE   16 (42)
T ss_pred             EEeCCCCCEEE
Confidence            45666665554

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=80.48  E-value=1.2  Score=41.00  Aligned_cols=18  Identities=22%  Similarity=0.794  Sum_probs=10.7

Q ss_pred             ccCccchhHHHhhcCCCccccCccccc
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKV   52 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~   52 (226)
                      .-|..||.         +..|+.|+..
T Consensus       436 l~C~~Cg~---------v~~Cp~Cd~~  453 (730)
T COG1198         436 LLCRDCGY---------IAECPNCDSP  453 (730)
T ss_pred             eecccCCC---------cccCCCCCcc
Confidence            34777765         3456777654

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=80.34  E-value=0.73  Score=23.77  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=8.8

Q ss_pred             cCccchhHHHhhcCCCccccCccccc
Q psy14244         27 KCHQCQRLIFLSANAGVHKCEYCHKV   52 (226)
Q Consensus        27 ~C~~C~k~f~~~~~~~~~~C~~C~~~   52 (226)
                      +|+.|+-.+.. ..-..+.|+.|+..
T Consensus         4 ~Cp~C~se~~y-~D~~~~vCp~C~~e   28 (30)
T PF08274_consen    4 KCPLCGSEYTY-EDGELLVCPECGHE   28 (30)
T ss_dssp             --TTT-----E-E-SSSEEETTTTEE
T ss_pred             CCCCCCCccee-ccCCEEeCCccccc
Confidence            46666655444 33334556666543

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-13
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		3e-10
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		9e-10
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		4e-10
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		6e-09
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-08
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		5e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		9e-08
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		2e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		7e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		8e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		9e-07
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-06
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-06
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		3e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		5e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		5e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		6e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		6e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		1e-05
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		2e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-05
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-04
2ena_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		2e-04
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		3e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		4e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		4e-04
2eq1_A	46	Solution Structure Of The 9th C2h2 Type Zinc Finger		4e-04
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		5e-04
2ep0_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2ep3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
            H  +  YKC +C +      +   H          KC  C K F Q+++L +H      
Sbjct: 43  THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
            +PY C  C KSF+   +L  HQ  H+G +P+KC  C KSF  + N   TH  T+T    
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN-LHTHQRTHTGE-- 159
Query: 129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                      KPY+C  C + F  R  L  HQ
Sbjct: 160 -----------KPYKCPECGKSFSRRDALNVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +KC  C K F Q S+L  H       +PYKC  C KSF+ S +L  HQ  H+G +P+KC 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 104 TCDKSF 109
            C KSF
Sbjct: 65  ECGKSF 70

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           +PYKC  C KSF+ S NL  HQ  H+G +P+KC  C KSF +Q +    H  T+T     
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSF-SQSSDLQKHQRTHTGE--- 58
Query: 130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
                     KPY+C  C + F    +L  HQ
Sbjct: 59  ----------KPYKCPECGKSFSRSDHLSRHQ 80

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 38  SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
           S ++G HKCE C K F ++  L +H       +PYKC TC+ +  +S +LN H  IHS  
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 98  RPFKCTTC 105
           RPFKC  C
Sbjct: 63  RPFKCQIC 70

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 46  CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
           C++C + F +  +LL H       RPY CD C K+F    +L  H+ IHS  +PFKC  C
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 106 DKSF 109
            K F
Sbjct: 80  GKGF 83

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 65  PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
           P    + + C  C + FT S NL  H+  H+  RP+ C  C K+F  Q            
Sbjct: 11  PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ------------ 58
Query: 125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
             +L  H  ++S   KP++C  C + F     L  H+
Sbjct: 59  -DHLRDHRYIHSK-EKPFKCQECGKGFCQSRTLAVHK 93

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 46  CEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFK 101
           C Y  C+K + + S L  H+      +PY+CD   CE+ F+ S  L  HQ  H+G++PF+
Sbjct: 9   CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 102 CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLIS 159
           C TC + F       S H  T+T+++  +         KP+ C    C + F     L+ 
Sbjct: 69  CKTCQRKFSR-----SDHLKTHTRTHTGE---------KPFSCRWPSCQKKFARSDELVR 114
Query: 160 H 160
           H
Sbjct: 115 H 115

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 66  QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           Q + R YKCD C KSF++S +L+ H+  H+G +P+KC  C K+F+ + +    H
Sbjct: 13  QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 72  YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
           + C  C KSF  S  L+TH LIHS  RP+ C  C K F             + KS++ +H
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-------------HQKSDMKKH 48
Query: 132 SCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
           + +++   KP++C  C + F    NLI+H
Sbjct: 49  TFIHT-GEKPHKCQVCGKAFSQSSNLITH 76

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCD 106
           C K+F   S++  H      PR + C  C K+F  S  L  HQL+H+G +PF+CT   C 
Sbjct: 13  CTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC--DRCSQFFGDRMNLISH 160
           K F    N   TH   +T               +PY C  D C++ F    NL SH
Sbjct: 72  KRFSLDFN-LRTHVRIHTGD-------------RPYVCPFDGCNKKFAQSTNLKSH 113

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 43  VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIR 98
           +H C+Y  C KV+ + S L +H       +PYKC  + C+  F  S  L  H   H+G +
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 99  PFKCTTCDKSF 109
           PF+C  C++SF
Sbjct: 75  PFQCGVCNRSF 85

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKS 108
           C K F  +S    H    +  RPY C  C K F    +L  H  IH+GI+P++C  C K 
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 109 FV 110
           F+
Sbjct: 75  FM 76

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 77  CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS 136
           C KSFT+    + H  +H G+RP+ C  C K F               K +L  H  +++
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK-------------MKHHLVGHMKIHT 61
Query: 137 HFPKPYQCDRCSQFFGDRMNLISH 160
              KPY+C+ C++ F  R +   H
Sbjct: 62  GI-KPYECNICAKRFMWRDSFHRH 84

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F++S NL  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 38  SANAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLI 93
            +    H C+Y  C K + + S L +H       +PY CD   C   F  S  L  H   
Sbjct: 1   GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 94  HSGIRPFKCTTCDKSF 109
           H+G RPF+C  CD++F
Sbjct: 61  HTGHRPFQCQKCDRAF 76

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+   NL+TH  IH+G +PF+C  C ++F  Q +  + H  T+T   
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS-LNAHIRTHTGE- 60
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
                       KP+ CD C + F 
Sbjct: 61  ------------KPFACDICGRKFA 73

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 47  EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
           E C + F Q  SL  H       +P++C  C ++F+ S +L TH   H+G +PF C  C 
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
           + F       S     +TK +L Q
Sbjct: 70  RKFAR-----SDERKRHTKIHLRQ 88

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 40  NAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHS 95
               H C+Y  C K + + S L +H       +PY CD   C   F  S  L  H   H+
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 96  GIRPFKCTTCDKSF 109
           G RPF+C  CD++F
Sbjct: 62  GHRPFQCQKCDRAF 75

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 26/90 (28%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+   NL+TH  IH+G +PF+C  C ++F                  
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF------------------ 44
Query: 128 LAQHSCMNSHF-----PKPYQCDRCSQFFG 152
            +QH+ +N H       KP+ CD C + F 
Sbjct: 45  -SQHTGLNQHIRTHTGEKPFACDICGRKFA 73

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHT 120
           +PYKCD C+ SF    NL +H+ +H+G +P++C  C   F    N   THT
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN-LKTHT 65

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S +L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 2   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 56
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 57  TGE---------KPFACDICGRKFA 72

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           +PY C  C K+F+ S  L  HQ +H+G +P+KC  C K+F
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 59  LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTST 118
           LL++  P+M+P     ++C++ F+ S  L  H  IH+G +PF+C  C ++F ++ +  +T
Sbjct: 9   LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF-SRSDHLTT 67
Query: 119 HTPTYT 124
           H  T+T
Sbjct: 68  HIRTHT 73

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 38  SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL---IH 94
           S ++GV +C  CHK F  +  L  HN      +P++C  C K +   +NL  H+    ++
Sbjct: 3   SGSSGV-ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 95  SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK-PYQCDRCSQFFGD 153
              + F C+ C ++F  ++              L  H  M SH  + PY+C  CSQ F  
Sbjct: 62  RSEQVFTCSVCQETFRRRM-------------ELRLH--MVSHTGEMPYKCSSCSQQFMQ 106
Query: 154 RMNLISH 160
           + +L SH
Sbjct: 107 KKDLQSH 113

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 36/150 (24%)
Query: 19  IHGNDNAYKCHQ--CQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC-- 74
           IHG    + CH   C R +               + F  Q  L+ H       +P+KC  
Sbjct: 28  IHGERKEFVCHWGGCSREL---------------RPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 75  DTCEKSFTNSQNLNTHQLIHSGIRPFKC--TTCDKSFVNQINPTSTHTPTYTKSNLAQHS 132
           + C KS++  +NL TH   H+G +P+ C    C K+F N              S+ A+H 
Sbjct: 73  EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA-------------SDRAKHQ 119
Query: 133 CMNSHFPKPYQCD--RCSQFFGDRMNLISH 160
                  KPY C    C++ + D  +L  H
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149

>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311- 343) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +P++CDTC+KSF     LN+H++IH+G +P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKC--TTCD 106
           K F  +  L++H       +P+ C    C K F  S+NL  H+  H+G +PFKC    CD
Sbjct: 70  KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129
Query: 107 KSFVN 111
           + F N
Sbjct: 130 RRFAN 134

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT-- 104
           C   +++   L +H C     +P+ C  + CEK FT+  +L  H L H+G + F C +  
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 105 CDKSFVNQIN 114
           CD  F  + N
Sbjct: 80  CDLRFTTKAN 89

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 46  CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
           C  C + +   +SL  H       + Y C  CEK F  ++    H++ H+G R ++C  C
Sbjct: 25  CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 106 DKSFVN 111
            KSF+N
Sbjct: 85  GKSFIN 90

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
           +P++C  C ++F+ S +L TH   H+G +PF C  C + F  
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43

>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PYKC+ C K+F    NL THQ+IH+G +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 74  CDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC 133
           C+ C K F +  +LN H+L HSG +P+ C  C   F  + +  S H  ++  S       
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK-DRMSYHVRSHDGS------- 61
Query: 134 MNSHFPKPYQCDRCSQFF 151
                 KPY C  C + F
Sbjct: 62  ----VGKPYICQSCGKGF 75

>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 528- 560) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PYKCD C KSF    +L  HQ IH+G +P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40

>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631- 663) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PY+C  C K+FT+  NL THQ IH+G +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-19
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-17
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-15
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-10
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-17
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-18
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-13
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-17
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-14
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-16
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-13
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-16
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-15
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-15
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-13
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-15
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-12
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-15
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-14
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-15
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-11
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	8e-15
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-14
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-14
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-10
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-13
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-13
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	8e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-12
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	9e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-10
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	6e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-10
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-05
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-09
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-09
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-09
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-08
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-08
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-08
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-08
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-08
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-08
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-08
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	9e-08
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-07
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-07
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	5e-07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	3e-06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	4e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	6e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	8e-06
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	8e-06
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	1e-05
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	4e-05
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	4e-05
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	5e-05
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	6e-05
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	1e-04
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	2e-04
3lj5_A	725	Portal protein, protein GP1; DNA ejection, molecul	2e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	9e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	9e-06
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	2e-05
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	9e-05
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	1e-04
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	2e-04
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	3e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	5e-05
1vt0_M	602	Portal protein, protein GP1; portal protein, DNA e	6e-05
1vt0_M	602	Portal protein, protein GP1; portal protein, DNA e	3e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	6e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	7e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	3e-04
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	4e-04

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 80.2 bits (199), Expect = 1e-19
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ---LIHSGIRPFK 101
           +C  CHK F  +  L  HN      +P++C  C K +   +NL  H+    ++   + F 
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68

Query: 102 CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
           C+ C ++F               +  L  H  M SH    PY+C  CSQ F  + +L SH
Sbjct: 69  CSVCQETFRR-------------RMELRLH--MVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

Query: 161 Q 161
            
Sbjct: 114 M 114

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 72.9 bits (180), Expect = 6e-17
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
              +C TC K F +   L  H   H+G +PF+C  C K +               K NL 
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR-------------KENLL 52

Query: 130 QH-SCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           +H +    +   + + C  C + F  RM L  H 
Sbjct: 53  EHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 71.4 bits (176), Expect = 2e-16
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 32/122 (26%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKP------ 69
            +C  C +         VH          +C  C K + ++ +LL H   + +       
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EARNCMNRSE 64

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           + + C  C+++F     L  H + H+G  P+KC++C + F+              K +L 
Sbjct: 65  QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ-------------KKDLQ 111

Query: 130 QH 131
            H
Sbjct: 112 SH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 18/104 (17%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH-------------KCEYCHKVF 53
           F  +  L      H  +  ++C +C +  F   N   H              C  C + F
Sbjct: 17  FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF 76

Query: 54  DQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSG 96
            ++  L  H        PYKC +C + F   ++L +H + +HSG
Sbjct: 77  RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
            SG    +C TC K F++             K  L  H     H   KP++C +C + + 
Sbjct: 2   SSGSSGVECPTCHKKFLS-------------KYYLKVH--NRKHTGEKPFECPKCGKCYF 46

Query: 153 DRMNLISHQ 161
            + NL+ H+
Sbjct: 47  RKENLLEHE 55

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 81.3 bits (202), Expect = 2e-19
 Identities = 45/147 (30%), Positives = 60/147 (40%), Gaps = 26/147 (17%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
           Y C +C +    S +   H          KC  C K F  +  L  H       +PYKC 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81

Query: 76  TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN 135
            C KSF+   NL  HQ  H+G +P+ C  C KSF                ++L  H    
Sbjct: 82  ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ-------------LAHLRAH--QR 126

Query: 136 SHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           +H   KPY+C  C + F    NL +HQ
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 79.8 bits (198), Expect = 7e-19
 Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 38/153 (24%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPR----- 70
           YKC +C +      +   H          KC  C K F Q+++L +H       R     
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ------RTHTGE 103

Query: 71  -PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
            PY C  C KSF+   +L  HQ  H+G +P+KC  C KSF               + NL 
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR-------------EDNLH 150

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
            H    +H   KPY+C  C + F  R  L  HQ
Sbjct: 151 TH--QRTHTGEKPYKCPECGKSFSRRDALNVHQ 181

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 69.8 bits (172), Expect = 5e-15
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 28/116 (24%)

Query: 53  FDQQSSLLSHNCPQMKPR------PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
               SS ++               PY C  C KSF+ S +L  HQ  H+G +P+KC  C 
Sbjct: 3   EFGSSSSVAQA------ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG 56

Query: 107 KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           KSF +             K +L +H    +H   KPY+C  C + F  R NL +HQ
Sbjct: 57  KSFSD-------------KKDLTRH--QRTHTGEKPYKCPECGKSFSQRANLRAHQ 97

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 55.5 bits (135), Expect = 6e-10
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 16/83 (19%)

Query: 80  SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF- 138
           S   S +      +  G +P+ C  C KSF ++              +LA+H    +H  
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSF-SR------------SDHLAEH--QRTHTG 46

Query: 139 PKPYQCDRCSQFFGDRMNLISHQ 161
            KPY+C  C + F D+ +L  HQ
Sbjct: 47  EKPYKCPECGKSFSDKKDLTRHQ 69

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQ 56
           FSQ+  L      H  +  Y C +C +     A+   H          KC  C K F ++
Sbjct: 87  FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146

Query: 57  SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
            +L +H       +PYKC  C KSF+    LN HQ  H+G + 
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 75.9 bits (188), Expect = 2e-18
 Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 28/108 (25%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPR------PYKCDTCEKSFTNSQNLNTHQLIHSGI 97
           HKCE C K F ++  L +H       R      PYKC TC+ +  +S +LN H  IHS  
Sbjct: 9   HKCEVCGKCFSRKDKLKTHM------RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62

Query: 98  RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
           RPFKC  C  +  N              S L  H  + SH        
Sbjct: 63  RPFKCQICPYASRN-------------SSQLTVH--LRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 72.8 bits (180), Expect = 3e-17
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
            P+KC+ C K F+    L TH   H+G++P+KC TCD +  +              S+L 
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD-------------SSSLN 53

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           +H  +  H   +P++C  C     +   L  H 
Sbjct: 54  KH--LRIHSDERPFKCQICPYASRNSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 54.0 bits (131), Expect = 4e-10
 Identities = 19/77 (24%), Positives = 22/77 (28%), Gaps = 18/77 (23%)

Query: 26  YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQ 85
           YKC  C                         SSL  H       RP+KC  C  +  NS 
Sbjct: 37  YKCKTCD------------------YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78

Query: 86  NLNTHQLIHSGIRPFKC 102
            L  H   H+G      
Sbjct: 79  QLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
                P KC  C K F ++            K  L  H  M  H   KPY+C  C     
Sbjct: 3   SGSSGPHKCEVCGKCF-SR------------KDKLKTH--MRCHTGVKPYKCKTCDYAAA 47

Query: 153 DRMNLISHQ 161
           D  +L  H 
Sbjct: 48  DSSSLNKHL 56

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 75.6 bits (187), Expect = 3e-18
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           +P++C  C ++F+ S +L TH   H+G +PF C  C + F  +                 
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-AR------------SDERK 48

Query: 130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
           +H   +     P   D+  +      +L +  
Sbjct: 49  RH--RDIQHILPILEDKVEELLSKNYHLENEV 78

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 64.4 bits (158), Expect = 4e-14
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
            +C  C + F +   L +H    ++     +P+ CD C + F  S     H+ I   I P
Sbjct: 4   FQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILP 58

Query: 100 FKCTTCDKSF 109
                 ++  
Sbjct: 59  ILEDKVEELL 68

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 74.5 bits (184), Expect = 2e-17
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 44  HKCEY--CHKVFDQQSSLLSHNCPQMK---PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
             C +  C K+F   S++  H    +    PR + C  C K+F  S  L  HQL+H+G +
Sbjct: 6   IACPHKGCTKMFRDNSAMRKH----LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61

Query: 99  PFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFGD 153
           PF+CT   C K F                 NL  H  +  H   +PY C    C++ F  
Sbjct: 62  PFQCTFEGCGKRFS-------------LDFNLRTH--VRIHTGDRPYVCPFDGCNKKFAQ 106

Query: 154 RMNLISHQ 161
             NL SH 
Sbjct: 107 STNLKSHI 114

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 21/100 (21%)

Query: 67  MKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
           M+PR   C    C K F ++  +  H   H G R   C  C K+FV              
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFV-------------E 46

Query: 125 KSNLAQHSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHQ 161
            S L +H     H   KP+QC    C + F    NL +H 
Sbjct: 47  SSKLKRH--QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 27/113 (23%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEY--CHKVFD 54
           F   + +      HG    + C +C +    S+    H          +C +  C K F 
Sbjct: 17  FRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75

Query: 55  QQSSLLSHNCPQMK----PRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFK 101
              +L +H    ++     RPY C    C K F  S NL +H L H+  +  +
Sbjct: 76  LDFNLRTH----VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 72.9 bits (180), Expect = 3e-17
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 18/93 (19%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ 130
              C+ C K F +  +LN H+L HSG +P+ C  C   F  +            K  ++ 
Sbjct: 7   GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF-KR------------KDRMSY 53

Query: 131 HSCMNSH---FPKPYQCDRCSQFFGDRMNLISH 160
           H  + SH     KPY C  C + F    +L  H
Sbjct: 54  H--VRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 64.8 bits (159), Expect = 4e-14
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG--IRPFK 101
             CE C K+F     L  H       +PY C  C   F     ++ H   H G   +P+ 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 102 CTTCDKSF 109
           C +C K F
Sbjct: 68  CQSCGKGF 75

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 27/77 (35%)

Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQM-----KPRPYKCDTCEKS 80
          Y C  C                     F ++  +  H            +PY C +C K 
Sbjct: 36 YSCPVCG------------------LRFKRKDRMSYH---VRSHDGSVGKPYICQSCGKG 74

Query: 81 FTNSQNLNTH-QLIHSG 96
          F+   +LN H + +HSG
Sbjct: 75 FSRPDHLNGHIKQVHSG 91

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 42/154 (27%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKC 74
           IHG    + CH                C    + F  Q  L+ H    M+     +P+KC
Sbjct: 28  IHGERKEFVCHWG-------------GCSRELRPFKAQYMLVVH----MRRHTGEKPHKC 70

Query: 75  DT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQ 130
               C KS++  +NL TH   H+G +P+ C    C K+F N              S+ A+
Sbjct: 71  TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN-------------ASDRAK 117

Query: 131 HSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHQ 161
           H    +H   KPY C    C++ + D  +L  H 
Sbjct: 118 HQ-NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 28/130 (21%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMK---PRPYKCDTCE-----KSFTNSQNLNTHQLIHSG 96
           + + C + FD Q  L+ H   +      + + C         + F     L  H   H+G
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64

Query: 97  IRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC--DRCSQFF 151
            +P KCT   C KS+                 NL  H  + SH   KPY C  + CS+ F
Sbjct: 65  EKPHKCTFEGCRKSYS-------------RLENLKTH--LRSHTGEKPYMCEHEGCSKAF 109

Query: 152 GDRMNLISHQ 161
            +  +   HQ
Sbjct: 110 SNASDRAKHQ 119

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 26/103 (25%)

Query: 70  RPYKCDTCEKSFTNSQNLNTH---QLIHSGIRPFKCTTCD-----KSFVNQINPTSTHTP 121
              + D C + F + + L  H   + IH   + F C         + F            
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPF-KA--------- 51

Query: 122 TYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHQ 161
              +  L  H  M  H   KP++C    C + +    NL +H 
Sbjct: 52  ---QYMLVVH--MRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 45  KCEY--CHKVFDQQSSLLSHNCPQMKPR------PYKCDT--CEKSFTNSQNLNTHQLIH 94
            CE+  C K F   S    H     + R      PY C    C K +T+  +L  H    
Sbjct: 99  MCEHEGCSKAFSNASDRAKH-----QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

Query: 95  SG 96
            G
Sbjct: 154 HG 155

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 71.3 bits (176), Expect = 2e-16
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 21/117 (17%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            C+ C K F  +S    H    +  RPY C  C K F    +L  H  IH+GI+P++C  
Sbjct: 12  PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70

Query: 105 CDKSFVNQINPTSTHTPTYTKSNLAQ--HSCMNSHFPKPYQCDRCSQFFGDRMNLIS 159
           C K F+              + +  +   SC      K Y+  +  Q   +     S
Sbjct: 71  CAKRFMW-------------RDSFHRHVTSCT-----KSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 63.2 bits (155), Expect = 2e-13
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           + Y C  C KSFT+    + H  +H G+RP+ C  C K F               K +L 
Sbjct: 9   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF-KM------------KHHLV 54

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
            H  M  H   KPY+C+ C++ F  R +   H
Sbjct: 55  GH--MKIHTGIKPYECNICAKRFMWRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 59.8 bits (146), Expect = 4e-12
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           + C  C K F  +  L+ H       +PY+C+ C K F    +   H+ + S  + ++  
Sbjct: 38  YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95

Query: 104 TCDKSFVNQINPTS 117
             +++      P+S
Sbjct: 96  KAEQNTTEASGPSS 109

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 70.6 bits (174), Expect = 5e-16
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 30/129 (23%)

Query: 44  HKCEY--CHKVFDQQSSLLSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIHS 95
             C Y  C+K + + S L  H     +     +PY+CD   CE+ F+ S  L  HQ  H+
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMH----SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62

Query: 96  GIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFG 152
           G++PF+C TC + F                 +L  H    +H   KP+ C    C + F 
Sbjct: 63  GVKPFQCKTCQRKF-------------SRSDHLKTH--TRTHTGEKPFSCRWPSCQKKFA 107

Query: 153 DRMNLISHQ 161
               L+ H 
Sbjct: 108 RSDELVRHH 116

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIH 94
            +C+ C + F +   L +H     +     +P+ C    C+K F  S  L  H  +H
Sbjct: 67  FQCKTCQRKFSRSDHLKTH----TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 69.0 bits (170), Expect = 8e-16
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 18/95 (18%)

Query: 70  RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C    C++ F+ S +L  H  IH+G +PF+C  C ++F ++              +
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF-SR------------SDH 49

Query: 128 LAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           L  H  + +H   KP+ CD C + F        H 
Sbjct: 50  LTTH--IRTHTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 64.0 bits (157), Expect = 8e-14
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 44  HKC--EYCHKVFDQQSSLLSHNCPQMK----PRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
           + C  E C + F Q  SL  H    ++     +P++C  C ++F+ S +L TH   H+G 
Sbjct: 5   YACPVESCDRRFSQSGSLTRH----IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 98  RPFKCTTCDKSF 109
           +PF C  C + F
Sbjct: 61  KPFACDICGRKF 72

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 51.3 bits (124), Expect = 4e-09
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
           +C  C + F +   L +H    ++     +P+ CD C + F  S     H  IH  
Sbjct: 35 FQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 68.2 bits (168), Expect = 2e-15
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           + + C  C + FT S NL  H+  H+  RP+ C  C K+F  +            + +L 
Sbjct: 16  KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF-RR------------QDHLR 62

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
            H     H   KP++C  C + F     L  H+
Sbjct: 63  DH--RYIHSKEKPFKCQECGKGFCQSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 67.8 bits (167), Expect = 4e-15
 Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
             C++C + F +  +LL H       RPY CD C K+F    +L  H+ IHS  +PFKC 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
            C K F  Q               LA H     H        
Sbjct: 78  ECGKGF-CQ------------SRTLAVH--KTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 65.5 bits (161), Expect = 2e-14
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
           + C  C R    S N  +H           C+ CHK F +Q  L  H     K +P+KC 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 76  TCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            C K F  S+ L  H+ +H         +
Sbjct: 78  ECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 16/79 (20%)

Query: 84  SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
           S   +  +L     + F C  C + F  +              NL  H    +H   +PY
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHF-TK------------SYNLLIH--ERTHTDERPY 46

Query: 143 QCDRCSQFFGDRMNLISHQ 161
            CD C + F  + +L  H+
Sbjct: 47  TCDICHKAFRRQDHLRDHR 65

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 67.6 bits (166), Expect = 3e-15
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 44  HKCEYCHKVFDQQSSLLSHNC----PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
           + C +C K F Q+  L  H      P   P  + C  C K+FT    +  H    +G   
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 100 FKCTTCDKSF 109
            +      S 
Sbjct: 76  VEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSG----IRPFKCTTCDKSFVNQINPTSTHTPTYTK 125
           +PY C  C+K+F   Q L+ H   +         F C+ C K+F               +
Sbjct: 14  KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF-------------TRR 60

Query: 126 SNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
           + +A+H   ++   P   + +      G
Sbjct: 61  NTMARH--ADNCAGPDGVEGENSGPSSG 86

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 20/81 (24%)

Query: 86  NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH-----FPK 140
           +  +    H+G +P+ C+ CDK+F               K  L  H     +      P 
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTF-------------RQKQLLDMH--FKRYHDPNFVPA 46

Query: 141 PYQCDRCSQFFGDRMNLISHQ 161
            + C +C + F  R  +  H 
Sbjct: 47  AFVCSKCGKTFTRRNTMARHA 67

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 67.2 bits (165), Expect = 4e-15
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 42  GVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGI 97
             H C+Y  C K + + S L +H       +PY CD   C   F  S  L  H   H+G 
Sbjct: 4   ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63

Query: 98  RPFKCTTCDKSF 109
           RPF+C  CD++F
Sbjct: 64  RPFQCQKCDRAF 75

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 18/97 (18%)

Query: 68  KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTK 125
                    C K++T S +L  H   H+G +P+ C    C   F                
Sbjct: 4   ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARS------------- 50

Query: 126 SNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
             L +H     H   +P+QC +C + F    +L  H 
Sbjct: 51  DELTRH--YRKHTGHRPFQCQKCDRAFSRSDHLALHM 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
          + C   F +   L  H       RP++C  C+++F+ S +L  H   H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 66.7 bits (164), Expect = 5e-15
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 16/91 (17%)

Query: 72  YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
           + C  C KSF  S  L+TH LIHS  RP+ C  C K F +Q            KS++ +H
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-HQ------------KSDMKKH 48

Query: 132 SCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
                H   KP++C  C + F    NLI+H 
Sbjct: 49  --TFIHTGEKPHKCQVCGKAFSQSSNLITHS 77

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 64.0 bits (157), Expect = 6e-14
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            C+ C K F + S+L +H       RPY C  C K F    ++  H  IH+G +P KC  
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62

Query: 105 CDKSFVNQINPTSTHTPTYTKSNLAQH 131
           C K+F +Q             SNL  H
Sbjct: 63  CGKAF-SQ------------SSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 54.0 bits (131), Expect = 3e-10
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 25 AYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
          ++ C  C +    S+    H           C+YC K F Q+S +  H       +P+KC
Sbjct: 1  SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60

Query: 75 DTCEKSFTNSQNLNTHQLIHSG 96
            C K+F+ S NL TH   H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 67.3 bits (165), Expect = 5e-15
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 44  HKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRP 99
           H C+   C KV+ + S L +H       +PYKC  + C+  F  S  L  H   H+G +P
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75

Query: 100 FKCTTCDKSF 109
           F+C  C++SF
Sbjct: 76  FQCGVCNRSF 85

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 26/114 (22%)

Query: 53  FDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKS 108
                  L         R + CD   C K +T S +L  H   H+G +P+KCT   CD  
Sbjct: 3   SGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56

Query: 109 FVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           F                  L +H     H   KP+QC  C++ F    +L  H 
Sbjct: 57  FARS-------------DELTRH--YRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
          E C   F +   L  H       +P++C  C +SF+ S +L  H   H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 66.0 bits (162), Expect = 8e-15
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKP-----RPYKCD--TCEKSFTNSQNLNTHQLIHSGI 97
               C ++F  +  L  H     K      + + C    C KSF   ++L  H  +HS  
Sbjct: 11  DFPGCGRIFSNRQYLNHH----KKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66

Query: 98  RPFKCTTCDKSF 109
           R + C     S 
Sbjct: 67  RDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 64.1 bits (157), Expect = 5e-14
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 21/89 (23%)

Query: 70  RPYKCDT--CEKSFTNSQNLNTHQLI-HSGIRPFKCT--TCDKSFVNQINPTSTHTPTYT 124
               CD   C + F+N Q LN H+   H   + F C    C KSF               
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF------------- 52

Query: 125 KSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
           K +L +H  M  H   + Y C+      G
Sbjct: 53  KKHLKEH--MKLHSDTRDYICEFSGPSSG 79

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 26/130 (20%)

Query: 44  HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRP 99
           + C +  C   +++   L +H C     +P+ C    CEK FT+  +L  H L H+G + 
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72

Query: 100 FKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF---PKPYQCDR--CSQFFG 152
           F C    CD  F              TK+N+ +H   N         Y C    C + F 
Sbjct: 73  FTCDSDGCDLRF-------------TTKANMKKH--FNRFHNIKICVYVCHFENCGKAFK 117

Query: 153 DRMNLISHQC 162
               L  HQ 
Sbjct: 118 KHNQLKVHQF 127

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 33/119 (27%)

Query: 44  HKCE--YCHKVFDQQSSLLSHNCPQM-----KPRPYKCDT--CEKSFTNSQNLNTHQLIH 94
             C+   C   F  ++++  H          K   Y C    C K+F     L  HQ  H
Sbjct: 73  FTCDSDGCDLRFTTKANMKKH---FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129

Query: 95  SGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH----FPKPYQCDRC 147
           +   P++C    CDK F                S L +H     H      K   C   
Sbjct: 130 TQQLPYECPHEGCDKRF-------------SLPSRLKRH--EKVHAGYPCKKDDSCSFV 173

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 22/99 (22%)

Query: 70  RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTK 125
           + Y C    C  ++  +  L  H   H+G +PF C    C+K F              + 
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFT-------------SL 57

Query: 126 SNLAQHSCMNSHF-PKPYQCD--RCSQFFGDRMNLISHQ 161
            +L +H    +H   K + CD   C   F  + N+  H 
Sbjct: 58  HHLTRH--SLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 45  KCEY--CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPF 100
            C +  C K F + + L  H     +  PY+C  + C+K F+    L  H+ +H+G    
Sbjct: 106 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 165

Query: 101 KCTTCDKSF 109
           K  +C    
Sbjct: 166 KDDSCSFVG 174

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 47/155 (30%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHK-------------------CEYCHKVFDQQSSL 59
           I     +     C R          H                    C    K F  +  L
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 60  LSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVN 111
           ++H    ++     +P+ C    C K F  S+NL  H+  H+G +PFKC    CD+ F N
Sbjct: 79  VNH----IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134

Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCD 145
                         S+  +H  M+ H   K     
Sbjct: 135 -------------SSDRKKH--MHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 29/132 (21%)

Query: 44  HKCEYCHKVFDQQSSLLSH---------NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
              + C + F     L++H                   +C    KSF     L  H  +H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 95  SGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQ 149
           +G +PF C    C K F                 NL  H    +H   KP++C+   C +
Sbjct: 86  TGEKPFPCPFPGCGKIFA-------------RSENLKIH--KRTHTGEKPFKCEFEGCDR 130

Query: 150 FFGDRMNLISHQ 161
            F +  +   H 
Sbjct: 131 RFANSSDRKKHM 142

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 27/125 (21%)

Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK------- 101
                      LS              +C+++F+    L TH  +     P +       
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 102 --CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCDR--CSQFFGDRMN 156
             C    KSF               K  L  H  +  H   KP+ C    C + F    N
Sbjct: 63  EECPREGKSF-------------KAKYKLVNH--IRVHTGEKPFPCPFPGCGKIFARSEN 107

Query: 157 LISHQ 161
           L  H+
Sbjct: 108 LKIHK 112

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 63.0 bits (154), Expect = 2e-13
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 43  VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR 98
           ++ C +  C K F + + L  H     +  PY+C    C+K F+    L  H+ +H+G  
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 99  PFKCTTCDKSF 109
             K  +C    
Sbjct: 61  CKKDDSCSFVG 71

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 72  YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSN 127
           Y C    C K+F     L  HQ  H+   P++C    CDK F                S 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS-------------LPSR 48

Query: 128 LAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
           L +H     H      + D CS         + H 
Sbjct: 49  LKRH--EKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSG--IRPFKCTTCDKSF 109
           +PY+C  C   FT S  +  H L      +  F C  CD   
Sbjct: 14  KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 18/79 (22%)

Query: 86  NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH---FPKPY 142
           +  +    HSG +P++C  C   F        T         +  H  +          +
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARF--------TQ-----SGTMKMH--ILQKHTENVAKF 46

Query: 143 QCDRCSQFFGDRMNLISHQ 161
            C  C      + +L  H 
Sbjct: 47  HCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 55.2 bits (134), Expect = 1e-10
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 9/63 (14%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQM-----KPRPYKCDTCEKSFTNSQNLNTHQ-LIHSGI 97
           ++C  CH  F Q  ++  H    +         + C  C+       +L  H    HS  
Sbjct: 16  YECYICHARFTQSGTMKMH---ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72

Query: 98  RPF 100
            P 
Sbjct: 73  GPS 75

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 61.7 bits (151), Expect = 3e-13
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
            P KC  C  S ++   L  H+ IH   RPFKC  C                    SNL+
Sbjct: 8   HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ-------------PSNLS 54

Query: 130 QH 131
           +H
Sbjct: 55  KH 56

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 52.5 bits (127), Expect = 8e-10
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMK----PRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
           KC  C      +++L  H     +     RP+KC+ C        NL+ H     G
Sbjct: 10 EKCSECSYSCSSKAALRIH----ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
            S   P KC+ C  S  +             K+ L  H     H   +P++C+ CS    
Sbjct: 4   GSSGHPEKCSECSYSCSS-------------KAALRIH--ERIHCTDRPFKCNYCSFDTK 48

Query: 153 DRMNLISHQ 161
              NL  H 
Sbjct: 49  QPSNLSKHM 57

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 16/86 (18%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHS---GIRPFKCTTCDKSFVNQINPTSTHTPTYTKS 126
              +C+ C  +     +LN HQ  H+       F C  C K F                 
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF-------------EKPD 52

Query: 127 NLAQHSCMNSHFPKPYQCDRCSQFFG 152
           ++A H   +         +      G
Sbjct: 53  SVAAHRSKSHPALLLAPQESSGPSSG 78

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 44  HKCEYCHKVFDQQSSLLSHN---CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
            +CE C     Q++SL  H       +    + C+ C K F    ++  H+         
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 101 KCTTCDK 107
                  
Sbjct: 68  APQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.3 bits (105), Expect = 9e-07
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 19/72 (26%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP----KPYQCDRCSQ 149
            SG    +C  C  +                K++L  H     H        + C+ C +
Sbjct: 2   SSGSSGLQCEICGFTC-------------RQKASLNWH--QRKHAETVAALRFPCEFCGK 46

Query: 150 FFGDRMNLISHQ 161
            F    ++ +H+
Sbjct: 47  RFEKPDSVAAHR 58

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKCTTCDKSF 109
           +PY C +C K F+   +LN H + +H+  RP KC       
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 9/45 (20%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP-----RPYKCDTCEKSFTN 83
          + C+ C K F +   L  H    +K      RP+KC       ++
Sbjct: 13 YICQSCGKGFSRPDHLNGH----IKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 25/69 (36%)

Query: 89  THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP------KPY 142
           +     S  +P+ C +C K F                   ++   +N H        +P+
Sbjct: 2   SSGSSGSVGKPYICQSCGKGF-------------------SRPDHLNGHIKQVHTSERPH 42

Query: 143 QCDRCSQFF 151
           +C       
Sbjct: 43  KCQVWVSGP 51

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 57.5 bits (140), Expect = 9e-12
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           R + C+ C ++F   ++L  H   H+  +P+ C  C+++F
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.7 bits (112), Expect = 8e-08
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHSG 96
            CE C + F +Q  L  H       +PY C  C ++FT    L  H Q IHSG
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 57.8 bits (141), Expect = 9e-12
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 13/61 (21%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ 130
           PYKCD C+ SF    NL +H+ +H+G +P++C  C   F N+             +NL  
Sbjct: 17  PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF-NR------------PANLKT 63

Query: 131 H 131
           H
Sbjct: 64  H 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 53.6 bits (130), Expect = 3e-10
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +KC+ C   F  + +L SH       +PY+C+ C   F    NL TH  IHSG +P+
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 84  SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
             + + H  +    +P+KC  C  SF               K NLA H     H   KPY
Sbjct: 2   GHHHHHHSHMTHSDKPYKCDRCQASF-RY------------KGNLASH--KTVHTGEKPY 46

Query: 143 QCDRCSQFFGDRMNLISHQ 161
           +C+ C   F    NL +H 
Sbjct: 47  RCNICGAQFNRPANLKTHT 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
             Y+C  C + +T+  N   H +      ++ + C  C K F               K N
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF-------------TRKDN 55

Query: 128 LAQH 131
           +  H
Sbjct: 56  MTAH 59

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 55.3 bits (134), Expect = 6e-11
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 44 HKCEYCHKVFDQQSSLLSH--NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
          ++C+ C +V+   S+   H     +   + Y C  C K FT   N+  H  I   I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 91  QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQ 149
           +    G   ++C  C + +        TH      SN  +H   +     K Y C  C +
Sbjct: 2   EFTKEGEHTYRCKVCSRVY--------TH-----ISNFCRHYVTSHKRNVKVYPCPFCFK 48

Query: 150 FFGDRMNLISHQ 161
            F  + N+ +H 
Sbjct: 49  EFTRKDNMTAHV 60

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)

Query: 55  QQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN 114
              S       Q + R YKCD C KSF++S +L+ H+  H+G +P+KC  C K+F  Q  
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF-IQ-- 58

Query: 115 PTSTHTPTYTKSNLAQH 131
                     +S+L  H
Sbjct: 59  ----------RSHLIGH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 53.6 bits (130), Expect = 3e-10
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
           +KC+ C K F   S L  H       +PYKCD C K+F    +L  H  +H+G  P  
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 16/79 (20%)

Query: 84  SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
           S +    +      R +KC  C KSF +              S+L++H    +H   KPY
Sbjct: 3   SGSSGRSEWQQRERRRYKCDECGKSFSH-------------SSDLSKH--RRTHTGEKPY 47

Query: 143 QCDRCSQFFGDRMNLISHQ 161
           +CD C + F  R +LI H 
Sbjct: 48  KCDECGKAFIQRSHLIGHH 66

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 55.8 bits (135), Expect = 6e-11
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 56  QSSLLSHNCPQMKP--RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           +   +++    + P  RPY C   +C++ F+ S  L  H  IH+G +PF+C  C ++F
Sbjct: 2   EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
          E C + F +   L  H       +P++C  C ++F+ S +L TH   H+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 54.8 bits (133), Expect = 1e-10
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           +PY C  C K+F+ S  L  HQ +H+G +P+KC  C K+F +Q             S L 
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF-SQ------------NSGLI 59

Query: 130 QH 131
            H
Sbjct: 60  NH 61

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           + C  C K F + S L+ H       +PYKC  C K+F+ +  L  HQ IH+     
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 48.2 bits (116), Expect = 3e-08
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 87  LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR 146
            +    IHSG +P+ C  C K+F                S L QH  +++   KPY+C  
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSR-------------SSILVQHQRVHTG-EKPYKCLE 47

Query: 147 CSQFFGDRMNLISHQ 161
           C + F     LI+HQ
Sbjct: 48  CGKAFSQNSGLINHQ 62

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 70  RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+ C    C   F+ S  L+ H+  HSG++P   ++
Sbjct: 11  KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 5e-09
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KCD C KSF     LN H ++H+  +P   ++
Sbjct: 11  KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 7e-04
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 14/57 (24%)

Query: 89  THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD 145
           +     +G +PFKC  C KSF               +S L +HS +++   KP    
Sbjct: 2   SSGSSGTGEKPFKCDICGKSF-CG------------RSRLNRHSMVHTA-EKPSGPS 44

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 57  SSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSF 109
           S          + R + C    C K++  S +L  H   H+G +PF C+   C++ F
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIH 94
          H C +  C K + + S L +H       +P+ C    CE+ F  S  L+ H+  H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 49.1 bits (118), Expect = 7e-09
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+ C  CEK+F++   L  HQ  H+  +P   ++
Sbjct: 9   KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 7e-09
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K + +  NL+ HQ +H+G RP   +
Sbjct: 11  KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 7e-09
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           RPY C+ C K+F    +L  H   H   +    ++
Sbjct: 11  RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 9e-09
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + YKCD C K F+ S +L THQ +H+G +P   ++
Sbjct: 11  KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C KSFT    L  HQ  H+G R    +
Sbjct: 11  KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
            PYKC  CEKSF+    L  HQ +H+  +P   +
Sbjct: 11  NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 1e-08
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K +    NL+ HQ +H G +    ++
Sbjct: 11  KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 1e-08
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            P+ C  C K FT+  NL  HQ IH+G RP   ++
Sbjct: 11  NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K F   ++L TH ++H+G +P   ++
Sbjct: 11  KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KC  C K F+    LN H  +H+G +P   ++
Sbjct: 11  KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + +KC  C+  F+ + +L  HQ +H G +P   ++
Sbjct: 11  KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+FT+  NL THQ IH+G +P   ++
Sbjct: 11  KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKCD C KSF    +L  HQ IH+G +P   +
Sbjct: 11  KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           PYKC  C K+FT    L+ HQ  H+G R    ++
Sbjct: 12  PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + +KC+ C+K+FT S +L  HQ IH+G +P   ++
Sbjct: 11  KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C+ C K+F +   L  HQ IH+G +P   ++
Sbjct: 11  KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
           +   C+ C K F +  +LN H+L HSG +P+     
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C KSF+ S  L  H + H+  +P   ++
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQ-MKPRPYKCDTCE--------KSFTNSQNLNTHQLIH 94
              + C + F     L++H   + +         C         KSF     L  H  +H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 95  SGIRPFKCT 103
           +G +    +
Sbjct: 86  TGEKSGPSS 94

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C  C K+FT   NL  HQ IH+  +P   ++
Sbjct: 11  KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +PY C+ C   F + Q L +H  IH+G  P 
Sbjct: 10  KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           RP+KC+ C K F    +L  H  +HS  +    ++
Sbjct: 11  RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C  C+K+F    NL  HQ  H+G +P   ++
Sbjct: 11  KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 47.1 bits (113), Expect = 5e-08
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C  C KSF+ S  L THQ IH+G +P   ++
Sbjct: 11  KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY C+ C K+F+   +L THQ+IH+G +P   
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K FT + +L  H  IH+G +P   +
Sbjct: 11  KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 6e-08
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C K +    +L+ HQ +H+G +    +
Sbjct: 11  KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 6e-08
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K+F    NL THQ+IH+G +P   +
Sbjct: 11  KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 6e-08
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C K+F    +LN H+ IH+G RP   +
Sbjct: 11  KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           R ++C  C K F  + N   H+ IH+G +P   ++
Sbjct: 11  RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  HQ IH+G++P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 8e-08
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           RP+KC+ C KSF  S +L  HQ IH+G +P   +
Sbjct: 11  RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P+KC+ C K FT +  L++HQ +H+G +P   +
Sbjct: 11  KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KC  C KS+    +L  HQ +H+G +P   ++
Sbjct: 11  KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+F    NL  HQ IH+G +P   ++
Sbjct: 11  KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C KSFT    L+ HQ IH+G +P   ++
Sbjct: 11  KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC  C K+F  S +L  H  +HSG RP   ++
Sbjct: 11  KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KC  C K+F  + +L +H  IH+G +P   ++
Sbjct: 11  KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K F ++  L+ HQ IH+G +P   +
Sbjct: 11  KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.9 bits (110), Expect = 1e-07
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           RPY C  C K+FT+  NL  HQ IH+G +P   
Sbjct: 11  RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + Y C  C KSF+ +  L  H+ +HSG +P   ++
Sbjct: 11  KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+F++ Q+L+ HQ IHSG +P   ++
Sbjct: 11  KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P KC  C K+F     L  HQ  H   +    ++
Sbjct: 11  KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C KSF     L+ HQ IH+G  P   ++
Sbjct: 11  KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+ C  C K+F++   LN H+ IH+G +P   ++
Sbjct: 11  KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +PYKC+TC   F    +L  H LIH+G  P 
Sbjct: 10  KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P++C  C KSF    NL THQ IH+G +    +
Sbjct: 11  KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K+F+ +  L  HQ IH+G +P   ++
Sbjct: 11  KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C K+F ++ +   HQ +H+G RP   +
Sbjct: 11  KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C+ C K+F  S +LN H  +H+       ++
Sbjct: 11  KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + ++C  C + FT   +LN HQ IH+G +P   ++
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 25/35 (71%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C+ C K FT + +L++HQ +H+G +P   ++
Sbjct: 11  KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY C+ C KSF    +LN H+ IH+G +P   +
Sbjct: 11  KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY+C  C K+F    +LN H+ +H+G R    
Sbjct: 11  KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + YKC+ C K F+ +  L+ HQ IH+G +P   ++
Sbjct: 11  KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  H+ IH+G +P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY C  C KSF  +  L  HQ +HSG +P   +
Sbjct: 11  KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C  C  +F+ S +L  H   H    P   ++
Sbjct: 11  KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY+CD C K+F++  +L  HQ +HSG +P   +
Sbjct: 11  KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K FT + +L  H+ IH+G +P   +
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY+C+ C K+F+   +L THQ IH+G +P   +
Sbjct: 11  KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C  C K+F++   L  H   HSG +P   ++
Sbjct: 11  KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C+ C K+F+ +  L  HQ +H+G +P   ++
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P++C  C KSF+ +  L  HQ IH+G  P   +
Sbjct: 11  KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           R Y+C  C K+F     L  HQ IH+G +P   ++
Sbjct: 11  RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC  C K F  + +L  HQLIH+G +P   ++
Sbjct: 11  KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY CD C K+F  S  L  HQ IH+G +P   +
Sbjct: 11  KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           + ++C  C K+FT    L+ HQ IH+G +P   +
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K+F    +L  HQ  HSG +P   +
Sbjct: 11  KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY+C+ C+K+F    NL  HQ  H+G      
Sbjct: 11  KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  H+ IH+G +P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           RPY+C  C K+F    +L  H+  H+G +P   +
Sbjct: 11  RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  H+ +H+G +P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 44.4 bits (106), Expect = 5e-07
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C  C K+F+    L  HQ  H+G++P   ++
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P+KC+ C K F  +    +HQ  HSG +P   +
Sbjct: 11  KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 44.0 bits (105), Expect = 5e-07
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
            PY+C  C K+F     L +HQ  H+G      
Sbjct: 9   NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 5e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           R Y+C  C K+F     L+ HQ IH G +P   +
Sbjct: 11  RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 7e-07
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY+C  C K+FT   +L  HQ  H+G +P   +
Sbjct: 11  KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 46.7 bits (110), Expect = 9e-07
 Identities = 9/61 (14%), Positives = 31/61 (50%)

Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
           PE I+   +  + ++   D  +K+  Q+ +++ ++  ++  Q+Q +Q ++ +   +   +
Sbjct: 84  PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143

Query: 224 Q 224
            
Sbjct: 144 A 144

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.2 bits (88), Expect = 9e-04
 Identities = 9/57 (15%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 178 ISNNDEQA----KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-----QQQQQQ 225
           I+  D        I+  +++Q+++ Q+     +  +Q+ +++ ++      Q+Q +Q
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.6 bits (104), Expect = 9e-07
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
            PY+C  C K F+    L +HQ  HSG      
Sbjct: 11  NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+F+ + +L  HQ +H+G +P   ++
Sbjct: 11  KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY C+ C K+F+    L+ HQ  H+G +P   +
Sbjct: 11  KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            PY+C  C K+F+    L +HQ  H+G +P   ++
Sbjct: 11  NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + + CD C K+F     L  HQ +H G +    ++
Sbjct: 11  KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           PY C+ C K+F +   L  H   H+G      
Sbjct: 12  PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.1 bits (100), Expect = 3e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           PY+C+ C K+F     L  H+  H+G+     
Sbjct: 12  PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
            PY C  C KSFT   +L  HQ   S   P  
Sbjct: 10  TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 41.4 bits (98), Expect = 6e-06
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           R Y+C  C KSF    +L  H+ IH+G  P 
Sbjct: 9   RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.0 bits (97), Expect = 8e-06
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +PY+CD C K+F+   +L  H  +H+G  P 
Sbjct: 10  KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
             V+ ++   +    Q  +K  +  ++QQ   + QQ +Q QQ     Q Q    Q Q
Sbjct: 563 KGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQ 619

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
              P+        L    +  D +    M+    +Q  Q   ++ +  ++QQ   + QQ 
Sbjct: 540 GKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQA 599

Query: 221 QQQQQ 225
           +Q QQ
Sbjct: 600 KQGQQ 604

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 13/55 (23%), Positives = 20/55 (36%)

Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            D    Q+     +     ++QQ   + QQ +Q QQ     Q Q    Q Q +  
Sbjct: 569 RDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELA 623

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 12/62 (19%), Positives = 21/62 (33%)

Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
                  + +   +        K +  ++QQ   + QQ +Q QQ     Q Q    Q Q 
Sbjct: 561 DGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQA 620

Query: 224 QQ 225
           + 
Sbjct: 621 EL 622

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%)

Query: 163 GPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
           G E ++   +    Q+     +   + Q   + QQ +Q QQ     Q Q    Q Q +  
Sbjct: 564 GVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELA 623

Query: 223 QQQS 226
           + Q+
Sbjct: 624 KAQN 627

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 11/62 (17%), Positives = 20/62 (32%)

Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
              +      L  +          K   Q   ++ +  ++QQ   + QQ +Q QQ     
Sbjct: 550 QLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMV 609

Query: 224 QQ 225
           Q 
Sbjct: 610 QA 611

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
            +Q  +   +   + +   + QQ +Q QQ     Q Q    Q Q +  + Q Q
Sbjct: 576 LIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQ 628

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           +     +  +  +     E+ +  ++ QQ +Q QQ     Q Q    Q Q +  + Q Q 
Sbjct: 570 DYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQT 629

Query: 225 QS 226
            S
Sbjct: 630 LS 631

>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            +   ++      ++Q      ++ +  ++QQ   + QQ +Q QQ     Q Q     
Sbjct: 560 LDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQ 617

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 16/53 (30%), Positives = 19/53 (35%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          + CE C     + S L  H       RPY C  C  SF    NL  H    + 
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 72  YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN 114
           Y C+ C         L  H   H+ +RP+ CT C+ SF  + N
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGN 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 40.6 bits (96), Expect = 9e-06
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQ-LIHSGIRPFKCTT 104
           +PY+C  C K+F  + +L  H    H+G +P   ++
Sbjct: 11  KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 5/37 (13%), Positives = 15/37 (40%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           Q Q     +   +   +Q+++Q Q+  ++   +    
Sbjct: 1   QAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVE 37

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 4/37 (10%), Positives = 15/37 (40%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            Q     +   +   +Q+++Q Q+  ++   +   + 
Sbjct: 2   AQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVEL 38

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 6/43 (13%), Positives = 19/43 (44%)

Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           QA++    +   +   +Q+++Q Q+  ++   +   +   Q  
Sbjct: 1   QAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSE 43

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 4/37 (10%), Positives = 17/37 (45%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
            +   +   +Q+++Q Q+  ++   +   +   Q ++
Sbjct: 8   ARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEA 44

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 4/37 (10%), Positives = 17/37 (45%)

Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
           +   +   +Q+++Q Q+  ++   +   +   Q + +
Sbjct: 9   RDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAA 45

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY C  C+++F+++  L  HQ +H+       
Sbjct: 9   KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>1vt0_M Portal protein, protein GP1; portal protein, DNA ejection, molecular motor, DNA packaging podoviridae; 3.25A {Enterobacteria phage P22} PDB: 3lj4_A Length = 602

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
              P+        L    +  D +    M+    +Q  Q   ++ +  ++QQ   + QQ 
Sbjct: 540 GKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQA 599

Query: 221 QQ 222
           +Q
Sbjct: 600 KQ 601

>1vt0_M Portal protein, protein GP1; portal protein, DNA ejection, molecular motor, DNA packaging podoviridae; 3.25A {Enterobacteria phage P22} PDB: 3lj4_A Length = 602

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
              P    L  Q     +   ++M +    +Q  Q   ++ +  ++QQ   + QQ +Q
Sbjct: 544 QGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQ 601

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
            KC  C  +F ++S+L          +   C+ C K       LN  +   SG +  
Sbjct: 19  QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 21/79 (26%)

Query: 83  NSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY 142
           +S +    Q IH G R  KC+ C   F+ +             S L++         K  
Sbjct: 2   SSGSSGKRQKIHLGDRSQKCSKCGIIFIRR-------------STLSRR--------KTP 40

Query: 143 QCDRCSQFFGDRMNLISHQ 161
            C++C +       L   +
Sbjct: 41  MCEKCRKDSCQEAALNKDE 59

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           + Y C+ C K+FT   +L  HQ IH+       
Sbjct: 11  KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
           P+KC  C++ FT    L  H+  H+ 
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHAR 37

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGIR 98
          RP+ C    C K FT S  L  H+  H+G +
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.84
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.84
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.82
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.79
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.71
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.71
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.64
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.63
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.62
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.59
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.58
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.58
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.58
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.56
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.56
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.54
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.53
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.51
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.5
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.48
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.44
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.43
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.43
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.43
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.4
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.4
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.4
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.4
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.39
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.39
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.39
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.38
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.38
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.37
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.37
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.37
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.35
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.34
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.34
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.33
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.29
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.29
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.28
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.26
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.25
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.25
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.24
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.23
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.23
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.22
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.21
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.21
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.21
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.21
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.2
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.2
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.2
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.19
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.19
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.19
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.17
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.17
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.17
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.17
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.16
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.16
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.14
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.14
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.13
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.12
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.12
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.12
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.11
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.07
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.07
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.03
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.01
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.97
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.96
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.95
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.95
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.9
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.86
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.8
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.8
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.78
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.77
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.76
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.73
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.72
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.71
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.68
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.67
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.63
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.48
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.48
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.46
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.44
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.42
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.78
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.41
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.77
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.4
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.38
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.37
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.37
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.36
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.35
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.33
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.33
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.33
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.32
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.32
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.3
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.3
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.62
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.28
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.28
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.28
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.28
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.25
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.23
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.23
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.21
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.2
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.19
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.49
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.17
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.17
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.46
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.15
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.1
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.1
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.24
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.87
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.81
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.38
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.26
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.73
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.66
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.45
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.32
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.18
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.19
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.94
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	93.37
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	93.35
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	93.2
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	92.88
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	92.8
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.09
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.43
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	90.73
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	90.38
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	89.97
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	89.82
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	89.75
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	89.68
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	89.36
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	89.1
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	88.37
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	86.93
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.84
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	86.08
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.95
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	83.75
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	83.12
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	82.26
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	82.16
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	81.62
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	80.95
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	80.53

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2e-36  Score=230.74  Aligned_cols=166  Identities=28%  Similarity=0.528  Sum_probs=134.2

Q ss_pred             eceeeEEeeCCCCcccCccchhHHHhhc----------CCCccccCccccccCChhHHhhccCCCCCCCCcccccCcccc
Q psy14244         12 SQQTLLCIHGNDNAYKCHQCQRLIFLSA----------NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSF   81 (226)
Q Consensus        12 ~~~~h~~~h~~~~~~~C~~C~k~f~~~~----------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   81 (226)
                      .|..|+.+|.+++||.|+.|++.|....          +.++|.|+.|++.|.+...|..|+++|.++++|.|+.|++.|
T Consensus         8 ~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   87 (190)
T 2i13_A            8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF   87 (190)
T ss_dssp             -----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             cchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCcc
Confidence            4568999999999999999999986543          345789999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccC
Q psy14244         82 TNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ  161 (226)
Q Consensus        82 ~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~  161 (226)
                      .+...|..|+++|+++++|.|+.|++.|.+             ...|..|++.|+ +++||.|++||+.|.....|..|+
T Consensus        88 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~L~~H~  153 (190)
T 2i13_A           88 SQRANLRAHQRTHTGEKPYACPECGKSFSQ-------------LAHLRAHQRTHT-GEKPYKCPECGKSFSREDNLHTHQ  153 (190)
T ss_dssp             SCHHHHHHHHHHHHTCCCEECTTTCCEESS-------------HHHHHHHHHHHH-CCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCCCcCCCCCCccCC-------------HHHHHHHHHHhC-CCCCeECCCCCcccCCHHHHHHHH
Confidence            999999999999999999999999999998             899999999988 799999999999999999999999


Q ss_pred             CCCCCCCCCcccchhhhccchhHHHHHHHH
Q psy14244        162 CGPEDIKPNVDNLQTQISNNDEQAKIKMQQ  191 (226)
Q Consensus       162 ~~h~~~~~~~c~~~~~~~~~~~~~~~~~q~  191 (226)
                      ++|++++||.|++|+..+.....+..|+..
T Consensus       154 ~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~  183 (190)
T 2i13_A          154 RTHTGEKPYKCPECGKSFSRRDALNVHQRT  183 (190)
T ss_dssp             HHHHCCCCEECTTTCCEESSHHHHHHHHTT
T ss_pred             HhcCCCCCeECCCCCCccCCHHHHHHHHHh
Confidence            999999999999999999999999999754

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=7.9e-35  Score=221.90  Aligned_cols=144  Identities=32%  Similarity=0.608  Sum_probs=127.8

Q ss_pred             ceeeEEeeCCCCcccCccchhHHHhhc----------CCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccC
Q psy14244         13 QQTLLCIHGNDNAYKCHQCQRLIFLSA----------NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFT   82 (226)
Q Consensus        13 ~~~h~~~h~~~~~~~C~~C~k~f~~~~----------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   82 (226)
                      |..|+++|.++++|.|+.|++.|....          +.++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.
T Consensus        37 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  116 (190)
T 2i13_A           37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS  116 (190)
T ss_dssp             HHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred             HHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccC
Confidence            469999999999999999999886543          4458999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCC
Q psy14244         83 NSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus        83 ~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      +...|..|+++|++++||.|+.|++.|.+             ...|..|+++|+ +++||.|++||+.|.....|..|++
T Consensus       117 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~H~-~~~~~~C~~C~~~f~~~~~L~~H~~  182 (190)
T 2i13_A          117 QLAHLRAHQRTHTGEKPYKCPECGKSFSR-------------EDNLHTHQRTHT-GEKPYKCPECGKSFSRRDALNVHQR  182 (190)
T ss_dssp             SHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HHHHHHHHHHHH-CCCCEECTTTCCEESSHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCCCCeECCCCCcccCC-------------HHHHHHHHHhcC-CCCCeECCCCCCccCCHHHHHHHHH
Confidence            99999999999999999999999999998             999999999988 7999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy14244        163 GPEDIKPN  170 (226)
Q Consensus       163 ~h~~~~~~  170 (226)
                      +|+|++||
T Consensus       183 ~H~~~k~~  190 (190)
T 2i13_A          183 THTGKKTS  190 (190)
T ss_dssp             TC------
T ss_pred             hcCCCCCC
Confidence            99999886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=1.5e-29  Score=192.63  Aligned_cols=154  Identities=21%  Similarity=0.368  Sum_probs=138.3

Q ss_pred             eCCCCcccC--ccchhHHHhh----------cCCCcccc--CccccccCChhHHhhccCCCCCCCCcccc--cCccccCC
Q psy14244         20 HGNDNAYKC--HQCQRLIFLS----------ANAGVHKC--EYCHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTN   83 (226)
Q Consensus        20 h~~~~~~~C--~~C~k~f~~~----------~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~   83 (226)
                      ..+.++|.|  +.|++.|...          .+.++|.|  +.|++.|.+...|..|+++|.++++|.|+  .|++.|.+
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            456789999  7899988654          34568999  89999999999999999999999999999  89999999


Q ss_pred             hhhHHHHH-hHh-cCCCCccC--CCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc--chhhhcChhhh
Q psy14244         84 SQNLNTHQ-LIH-SGIRPFKC--TTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNL  157 (226)
Q Consensus        84 ~~~l~~H~-~~h-~~~k~~~C--~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~--C~~~f~~~~~L  157 (226)
                      ...|..|+ +.| .++++|.|  +.|++.|.+             .+.|..|+++|+ +++||.|++  ||+.|...+.|
T Consensus        87 ~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~-------------~~~L~~H~~~H~-~~~~~~C~~~~C~k~F~~~~~L  152 (190)
T 1tf6_A           87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKK-------------HNQLKVHQFSHT-QQLPYECPHEGCDKRFSLPSRL  152 (190)
T ss_dssp             HHHHHHHHHTTSSTTTSCCEECSSSSCEECSS-------------HHHHHHHHGGGS-SSCSSBCCSSSCCCBCSSHHHH
T ss_pred             HHHHHHHHHHhcCCCcceeeCCCCCCccccCC-------------HHHHHHHHHHhC-CCCCccCCCCCCCchhcCHHHH
Confidence            99999999 667 47889999  889999998             999999999988 799999988  99999999999


Q ss_pred             hccCCCCCCCCCCcccc---hhhhccchhHHHHHHH
Q psy14244        158 ISHQCGPEDIKPNVDNL---QTQISNNDEQAKIKMQ  190 (226)
Q Consensus       158 ~~H~~~h~~~~~~~c~~---~~~~~~~~~~~~~~~q  190 (226)
                      ..|+++|++   |.|..   |+..+.....+..|+.
T Consensus       153 ~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~  185 (190)
T 1tf6_A          153 KRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVA  185 (190)
T ss_dssp             HHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHT
T ss_pred             HHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHH
Confidence            999999998   88888   9999999999888875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=3.9e-29  Score=190.33  Aligned_cols=138  Identities=25%  Similarity=0.502  Sum_probs=125.2

Q ss_pred             ceeeEEeeCCCCcccC--ccchhHHHhhc----------CCCccccC--ccccccCChhHHhhcc-CCC-CCCCCccc--
Q psy14244         13 QQTLLCIHGNDNAYKC--HQCQRLIFLSA----------NAGVHKCE--YCHKVFDQQSSLLSHN-CPQ-MKPRPYKC--   74 (226)
Q Consensus        13 ~~~h~~~h~~~~~~~C--~~C~k~f~~~~----------~~~~~~C~--~C~~~f~~~~~l~~H~-~~h-~~~~~~~C--   74 (226)
                      |..|+++|.+++||.|  +.|++.|....          +.++|.|+  .|++.|.+...|..|+ +.| .++++|.|  
T Consensus        30 L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~  109 (190)
T 1tf6_A           30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF  109 (190)
T ss_dssp             HHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECS
T ss_pred             HHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCC
Confidence            4799999999999999  88999886543          34588999  8999999999999999 777 57889999  


Q ss_pred             ccCccccCChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc---chh
Q psy14244         75 DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR---CSQ  149 (226)
Q Consensus        75 ~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~---C~~  149 (226)
                      +.|++.|.+...|..|+++|++++||.|+.  |++.|.+             .+.|..|+++|+ +   |.|+.   |++
T Consensus       110 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~-------------~~~L~~H~~~H~-~---~~C~~~~~C~~  172 (190)
T 1tf6_A          110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL-------------PSRLKRHEKVHA-G---YPCKKDDSCSF  172 (190)
T ss_dssp             SSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSS-------------HHHHHHHHTSSC-S---CCCCSTTTCCC
T ss_pred             CCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcC-------------HHHHHHHHHHhC-C---CcCCCCCcCCC
Confidence            899999999999999999999999999988  9999998             999999999887 3   99999   999


Q ss_pred             hhcChhhhhccCCCCCCC
Q psy14244        150 FFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       150 ~f~~~~~L~~H~~~h~~~  167 (226)
                      .|.....|..|+++|+++
T Consensus       173 ~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          173 VGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CCSCHHHHHHHHTTCC--
T ss_pred             ccccHHHHHHHHHhhcCC
Confidence            999999999999999874

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=3.9e-28  Score=178.70  Aligned_cols=135  Identities=27%  Similarity=0.435  Sum_probs=105.8

Q ss_pred             ccccCccccccCChhHHhhccC---CCCCCCCcccccC-----ccccCChhhHHHHHhHhcCCCCccCCC--Cccccccc
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNC---PQMKPRPYKCDTC-----EKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQ  112 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~C-----~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~  112 (226)
                      ++.|+.|++.|.+...|..|++   +|.++++|.|++|     ++.|.+...|..|+++|++++||.|+.  |++.|.+ 
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-   81 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR-   81 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS-
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC-
Confidence            4677888888888888888876   6777788877643     377888888888888888888888874  8888877 


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCCCCccCCc--chhhhcChhhhhccC-CCCCCCCCCcccc--hhhhccchhHHHH
Q psy14244        113 INPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHQ-CGPEDIKPNVDNL--QTQISNNDEQAKI  187 (226)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~--C~~~f~~~~~L~~H~-~~h~~~~~~~c~~--~~~~~~~~~~~~~  187 (226)
                                  ...|..|++.|+ +++||.|++  ||+.|...+.|..|+ ++|.+++||.|++  |+..+.....+..
T Consensus        82 ------------~~~l~~H~~~h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~  148 (155)
T 2gli_A           82 ------------LENLKTHLRSHT-GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK  148 (155)
T ss_dssp             ------------HHHHHHHHHHTT-TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHH
T ss_pred             ------------HHHHHHHHHHcC-CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHH
Confidence                        778888887776 577888887  888888888888887 7888888888877  8888888887777


Q ss_pred             HHHH
Q psy14244        188 KMQQ  191 (226)
Q Consensus       188 ~~q~  191 (226)
                      |+..
T Consensus       149 H~~~  152 (155)
T 2gli_A          149 HVKT  152 (155)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=5.8e-27  Score=172.44  Aligned_cols=130  Identities=28%  Similarity=0.516  Sum_probs=116.6

Q ss_pred             CCcccCccchhHHHhhc-------------CCCccccCc-----cccccCChhHHhhccCCCCCCCCccccc--CccccC
Q psy14244         23 DNAYKCHQCQRLIFLSA-------------NAGVHKCEY-----CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFT   82 (226)
Q Consensus        23 ~~~~~C~~C~k~f~~~~-------------~~~~~~C~~-----C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~   82 (226)
                      +.+|+|+.|++.|.+..             +.++|.|++     |++.|.+...|..|+++|+++++|.|++  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            46899999999886432             345677764     4599999999999999999999999986  999999


Q ss_pred             ChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCCCCCCCCCCccccccc-cccCCCCCCccCCc--chhhhcChhhh
Q psy14244         83 NSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHS-CMNSHFPKPYQCDR--CSQFFGDRMNL  157 (226)
Q Consensus        83 ~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~-~~~~~~~k~~~C~~--C~~~f~~~~~L  157 (226)
                      +...|..|+++|++++||.|+.  |++.|.+             .+.|..|+ +.|. +++||.|++  ||+.|...+.|
T Consensus        81 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~L~~H~~~~H~-~~~~~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           81 RLENLKTHLRSHTGEKPYMCEHEGCSKAFSN-------------ASDRAKHQNRTHS-NEKPYVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             SHHHHHHHHHHTTTCCCEECCSTTCCCEESS-------------SSTTHHHHHHTTC-SCCCEECCSTTTCCEESSHHHH
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCCCccCC-------------HHHHHHHHHHhcC-CCCCeeCCCCCCccccCCHHHH
Confidence            9999999999999999999998  9999998             99999998 6676 799999998  99999999999


Q ss_pred             hccCCCCCC
Q psy14244        158 ISHQCGPED  166 (226)
Q Consensus       158 ~~H~~~h~~  166 (226)
                      ..|+++|+|
T Consensus       147 ~~H~~~hhg  155 (155)
T 2gli_A          147 RKHVKTVHG  155 (155)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhhcC
Confidence            999998875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=2.5e-26  Score=169.11  Aligned_cols=120  Identities=23%  Similarity=0.420  Sum_probs=111.9

Q ss_pred             CCCccccCccccccCChhHHhhccCC-CCCCCC--------cccccCccccCChhhHHHHHhHhcCCCCccCCC--Cccc
Q psy14244         40 NAGVHKCEYCHKVFDQQSSLLSHNCP-QMKPRP--------YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKS  108 (226)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~  108 (226)
                      ...+|.|+.|++.|.+...|..|++. |.++.+        |.|++|++.|.+...|..|+++|+++++|.|+.  |++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence            34578999999999999999999987 776655        899999999999999999999999999999998  9999


Q ss_pred             ccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc--chhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        109 FVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       109 f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      |..             ...|..|++.|+ +++||.|++  |++.|.....|..|+++|++++||.|+
T Consensus       102 f~~-------------~~~L~~H~~~h~-~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          102 FAR-------------SENLKIHKRTHT-GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             ESC-------------HHHHHHHHTTTC-SSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             cCC-------------HHHHHHHHHhhC-CCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            998             999999999888 799999997  999999999999999999999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=2.8e-26  Score=162.37  Aligned_cols=116  Identities=27%  Similarity=0.526  Sum_probs=107.0

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhH---hcCCCCccCCCCcccccccCCC
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI---HSGIRPFKCTTCDKSFVNQINP  115 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~k~~~C~~C~~~f~~~~~~  115 (226)
                      ++.++|.|++|++.|.+...|..|+++|.++++|.|++|++.|.+...|..|++.   +.++++|.|+.|++.|.+    
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~----   78 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRR----   78 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESS----
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCC----
Confidence            4566899999999999999999999999999999999999999999999999986   578999999999999998    


Q ss_pred             CCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCC-CCCCCC
Q psy14244        116 TSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC-GPEDIK  168 (226)
Q Consensus       116 ~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~-~h~~~~  168 (226)
                               ...|..|++.|+ +++||.|++|++.|.....|..|++ .|.++.
T Consensus        79 ---------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           79 ---------RMELRLHMVSHT-GEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             ---------HHHHHHHHHHHS-SSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             ---------HHHHHHHHHHcC-CCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence                     999999999888 7999999999999999999999997 566653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=2.5e-26  Score=162.86  Aligned_cols=114  Identities=35%  Similarity=0.653  Sum_probs=102.8

Q ss_pred             CccccC--ccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCC
Q psy14244         42 GVHKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTS  117 (226)
Q Consensus        42 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~  117 (226)
                      ++|.|+  .|++.|.+...|..|+++| ++++|.|++|++.|.+...|..|+++|+++++|.|+.  |++.|..      
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~------   76 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL------   76 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESC------
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCC------
Confidence            468888  8999999999999999998 8899999999999999999999999999999999986  9999998      


Q ss_pred             CCCCCCCCccccccccccCCCCCCccCC--cchhhhcChhhhhccCCCCCCCCCC
Q psy14244        118 THTPTYTKSNLAQHSCMNSHFPKPYQCD--RCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       118 ~~~~~~~~~~l~~H~~~~~~~~k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                             ...|..|++.|+ ++++|.|+  .||+.|...+.|..|+++|++++++
T Consensus        77 -------~~~l~~H~~~h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           77 -------DFNLRTHVRIHT-GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             -------HHHHHHHHHHHH-CCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             -------HHHHHHHHHHhC-CCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence                   999999999988 79999996  5999999999999999999998875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=3.5e-26  Score=160.83  Aligned_cols=111  Identities=32%  Similarity=0.717  Sum_probs=104.0

Q ss_pred             CCCccccCc--cccccCChhHHhhccCCCCCCCCcccc--cCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCC
Q psy14244         40 NAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINP  115 (226)
Q Consensus        40 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~  115 (226)
                      +.++|.|++  |++.|.+...|..|+++|.++++|.|+  .|++.|.+...|..|+++|+++++|.|+.|++.|..    
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----   78 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSR----   78 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC----
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCC----
Confidence            456788887  999999999999999999999999999  799999999999999999999999999999999998    


Q ss_pred             CCCCCCCCCCccccccccccCCCCCCccC--CcchhhhcChhhhhccCCCC
Q psy14244        116 TSTHTPTYTKSNLAQHSCMNSHFPKPYQC--DRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       116 ~~~~~~~~~~~~l~~H~~~~~~~~k~~~C--~~C~~~f~~~~~L~~H~~~h  164 (226)
                               ...|..|++.|+ +++||.|  +.||+.|...+.|..|+++|
T Consensus        79 ---------~~~l~~H~~~h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           79 ---------SDHLKTHTRTHT-GEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ---------HHHHHHHHHHHH-TCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ---------HHHHHHHHHHhc-CCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence                     999999999888 6899999  89999999999999999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=8.6e-26  Score=162.10  Aligned_cols=111  Identities=24%  Similarity=0.427  Sum_probs=93.4

Q ss_pred             ceeeEEeeCCCCcccCccchhHHHhhcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHh
Q psy14244         13 QQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        13 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      +..|..+|.|++||.|                  ++||+.|.....|..|+++|++++||.|++|++.|.....|..|++
T Consensus        10 ~~h~~~~h~Gek~y~C------------------~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   71 (133)
T 2lt7_A           10 DDHYELIVDGRVYYIC------------------IVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI   71 (133)
T ss_dssp             SSEEEEEETTEEEEEE------------------TTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHH
T ss_pred             HhhceeecCCCcCeEC------------------CCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcc
Confidence            4567778888877654                  5667788889999999999999999999999999999999999999


Q ss_pred             HhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCC-----CCCccCCcchhhhcCh
Q psy14244         93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-----PKPYQCDRCSQFFGDR  154 (226)
Q Consensus        93 ~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~-----~k~~~C~~C~~~f~~~  154 (226)
                      +|++++||.|+.|++.|..             .+.|..|++.+++.     .++|+|..|++.|...
T Consensus        72 ~H~~~k~~~C~~C~k~F~~-------------~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           72 HHTGERRYQCLACGKSFIN-------------YQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHTCCCEEESSSCCEESS-------------HHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             ccCCCccccCCCCCCCcCC-------------HHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            9999999999999999998             89999999888732     2468899998877643

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=2.2e-26  Score=165.23  Aligned_cols=109  Identities=19%  Similarity=0.216  Sum_probs=98.8

Q ss_pred             HhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCC
Q psy14244         59 LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF  138 (226)
Q Consensus        59 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~  138 (226)
                      +..|..+|.|+++|.|++|++.|.....|..|+++|++++||.|+.|++.|..             .+.|..|+++|. +
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~-------------~~~L~~H~~~H~-~   75 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPL-------------AEYRTKHEIHHT-G   75 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESS-------------HHHHHHHHHHHH-T
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeeccc-------------ccchhhhccccC-C
Confidence            44556789999999999999999999999999999999999999999999998             999999999988 7


Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCCC------CCcccchhhhccc
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDIK------PNVDNLQTQISNN  181 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~------~~~c~~~~~~~~~  181 (226)
                      ++||.|++||+.|...+.|..|+++|++++      +|.|.+|+..+..
T Consensus        76 ~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             CCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             CccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            999999999999999999999999988765      4778888766543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=9.8e-24  Score=149.22  Aligned_cols=112  Identities=26%  Similarity=0.474  Sum_probs=105.0

Q ss_pred             CCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCcccccccccc--CCCCCCccC
Q psy14244         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN--SHFPKPYQC  144 (226)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~--~~~~k~~~C  144 (226)
                      +++++|.|++|++.|.+...|..|+++|+++++|.|+.|++.|.+             ...|..|+..+  +.++++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~~~~~~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR-------------KENLLEHEARNCMNRSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSS-------------HHHHHHHHHHCCCCSCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcC-------------HHHHHHHHhhhhcCCCCCCeEC
Confidence            578899999999999999999999999999999999999999998             99999998753  236899999


Q ss_pred             CcchhhhcChhhhhccCCCCCCCCCCcccchhhhccchhHHHHHHHH
Q psy14244        145 DRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQ  191 (226)
Q Consensus       145 ~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~~~~~~~~~~~~~~~q~  191 (226)
                      ++|++.|.....|..|+++|++++||.|++|+..+.....+..|+..
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=1.6e-23  Score=147.13  Aligned_cols=110  Identities=23%  Similarity=0.480  Sum_probs=104.6

Q ss_pred             CCCCCccccc--CccccCChhhHHHHHhHhcCCCCccCC--CCcccccccCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy14244         67 MKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (226)
Q Consensus        67 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~  142 (226)
                      +++++|.|++  |++.|.+...|..|+++|+++++|.|+  .|++.|.+             ...|..|++.|+ ++++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~   67 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSR-------------SDQLKRHQRRHT-GVKPF   67 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESS-------------HHHHHHHHHHHH-CCCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCC-------------HHHHHHHHHHcC-CCCCc
Confidence            5788999997  999999999999999999999999999  79999998             999999999988 79999


Q ss_pred             cCCcchhhhcChhhhhccCCCCCCCCCCcc--cchhhhccchhHHHHHHH
Q psy14244        143 QCDRCSQFFGDRMNLISHQCGPEDIKPNVD--NLQTQISNNDEQAKIKMQ  190 (226)
Q Consensus       143 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c--~~~~~~~~~~~~~~~~~q  190 (226)
                      .|++||+.|.....|..|+++|++++||.|  +.|+..+.....+..|+.
T Consensus        68 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN  117 (119)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred             cCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHh
Confidence            999999999999999999999999999999  899999999999998875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=2.5e-23  Score=153.01  Aligned_cols=116  Identities=26%  Similarity=0.452  Sum_probs=103.8

Q ss_pred             eEEeeCCCCcccCccchhHHHhhcCCC-----------c--------cccCccccccCChhHHhhccCCCCCCCCccccc
Q psy14244         16 LLCIHGNDNAYKCHQCQRLIFLSANAG-----------V--------HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT   76 (226)
Q Consensus        16 h~~~h~~~~~~~C~~C~k~f~~~~~~~-----------~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   76 (226)
                      ...+..++.+|.|+.|++.|.....|.           +        |.|++|++.|.+...|..|+++|+++++|.|++
T Consensus        16 c~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   95 (155)
T 2rpc_A           16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF   95 (155)
T ss_dssp             CCBCCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC
T ss_pred             EEeechhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc
Confidence            344566788999999999886443222           2        789999999999999999999999999999998


Q ss_pred             --CccccCChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCC
Q psy14244         77 --CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (226)
Q Consensus        77 --C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~  145 (226)
                        |++.|.....|..|+++|++++||.|+.  |++.|..             ...|..|+++|+ +++||.|+
T Consensus        96 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~-------------~~~L~~H~~~H~-~~k~~~c~  154 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN-------------SSDRKKHMHVHT-SDKSGPSS  154 (155)
T ss_dssp             TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSS-------------HHHHHHSSTTTT-SCCCSCSC
T ss_pred             CCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCC-------------HHHHHHHHHHhc-CCCCCCCC
Confidence              9999999999999999999999999997  9999998             999999999988 79999986

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-22  Score=141.77  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             ChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhH--hcCCCCcc-CCCCcccc--cccCCCCCCCCCCCCCcccc
Q psy14244         55 QQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFK-CTTCDKSF--VNQINPTSTHTPTYTKSNLA  129 (226)
Q Consensus        55 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~k~~~-C~~C~~~f--~~~~~~~~~~~~~~~~~~l~  129 (226)
                      +...|..|+++|++++||.|++|++.|.....|..|+++  |.+++++. |+.|++.|  ..             ...|.
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~-------------~~~l~   69 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR-------------KRSLL   69 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCC-------------CCCCC
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCccccccc-------------HHHHH
Confidence            356789999999999999999999999999999999999  87777765 99999998  77             88999


Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      .|+++|. +++||.|++||+.|.....|..|+++|+.......
T Consensus        70 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           70 EMEGKED-AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             CCCCSCC-CCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             HHhhccC-CCcceECCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            9999988 79999999999999999999999999887655443

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=1.3e-22  Score=143.62  Aligned_cols=107  Identities=31%  Similarity=0.615  Sum_probs=91.6

Q ss_pred             CCCcccCc--cchhHHHhhc---------CCCccccCccccccCChhHHhhccCCCCCCCCccccc--CccccCChhhHH
Q psy14244         22 NDNAYKCH--QCQRLIFLSA---------NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLN   88 (226)
Q Consensus        22 ~~~~~~C~--~C~k~f~~~~---------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~   88 (226)
                      ++++|.|+  .|++.|....         +.++|.|++|++.|.+...|..|+++|+++++|.|++  |++.|.....|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            45789999  8999886543         3458999999999999999999999999999999986  999999999999


Q ss_pred             HHHhHhcCCCCccCC--CCcccccccCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy14244         89 THQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (226)
Q Consensus        89 ~H~~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~  142 (226)
                      .|+++|+++++|.|+  .|++.|.+             .+.|..|+++|+ +++++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~L~~H~~~H~-~~k~~  123 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQ-------------STNLKSHILTHA-KAKNN  123 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSS-------------TTTTHHHHHHHC------
T ss_pred             HHHHHhCCCCceECCCCCCCCccCC-------------HHHHHHHHHHHc-ccccC
Confidence            999999999999996  59999998             999999999988 56664

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.84  E-value=9.6e-22  Score=135.33  Aligned_cols=94  Identities=28%  Similarity=0.596  Sum_probs=85.4

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC  144 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C  144 (226)
                      ...++++|.|++|++.|.....|..|+++|+++++|.|+.|++.|..             ...|..|++.|+ ++++|.|
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C   76 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR-------------QDHLRDHRYIHS-KEKPFKC   76 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC-------------HHHHHHHGGGSC-CCCTTSC
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC-------------HHHHHHHHHHhC-CCCCeEC
Confidence            34567889999999999999999999999999999999999999988             889999998888 6899999


Q ss_pred             CcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        145 DRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       145 ~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      ++|++.|.....|..|+++|.+++|+.+
T Consensus        77 ~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           77 QECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9999999999999999999999998864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=8.7e-22  Score=133.08  Aligned_cols=91  Identities=29%  Similarity=0.582  Sum_probs=71.2

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCC
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~  145 (226)
                      +.++++|.|++|++.|.+...|..|+++|+++++|.|+.|++.|..             ...|..|++.|+ ++++|.|+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~   68 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD-------------SSSLNKHLRIHS-DERPFKCQ   68 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESS-------------HHHHHHHHHHSC-CCCCEECS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCC-------------HHHHHHHHHHhC-CCCCccCC
Confidence            4566778888888888888888888888887788888888888877             777888877776 57788888


Q ss_pred             cchhhhcChhhhhccCCCCCCCCCC
Q psy14244        146 RCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       146 ~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                      +|++.|.....|..|+++|+++++.
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCCC
Confidence            8888888888888888888877654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=1.6e-21  Score=134.54  Aligned_cols=96  Identities=17%  Similarity=0.326  Sum_probs=88.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK  140 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k  140 (226)
                      .++++|+++++|.|++|++.|.....|..|+++|.  ++|.|+.|++.|..             ...|..|+. |. +++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~-------------~~~l~~H~~-H~-~~~   68 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFS-------------PELKQEHES-KC-EYK   68 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSS-------------HHHHHHHHH-HC-STG
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCC-------------HHHHHHHHH-cC-CCC
Confidence            46778999999999999999999999999999984  79999999999998             899999995 66 799


Q ss_pred             CccCCcchhhhcChhhhhccCC-CCCCCCCCccc
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQC-GPEDIKPNVDN  173 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~c~  173 (226)
                      ||.|++|++.|.....|..|++ +|.+++||.+.
T Consensus        69 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           69 KLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999997 99999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.81  E-value=1.4e-21  Score=130.36  Aligned_cols=87  Identities=31%  Similarity=0.648  Sum_probs=70.1

Q ss_pred             CCCCcccc--cCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCC
Q psy14244         68 KPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (226)
Q Consensus        68 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~  145 (226)
                      +++||.|+  .|++.|.....|..|+++|+++++|.|+.|++.|..             ...|..|++.|+ +++||.|+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR-------------SDHLTTHIRTHT-GEKPFACD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HHHHHHHHHHHH-CCCCEECT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCC-------------HHHHHHHHHHcC-CCCCccCC
Confidence            35788887  588888888888888888888888888888888887             788888888777 67888888


Q ss_pred             cchhhhcChhhhhccCCCCCCCC
Q psy14244        146 RCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       146 ~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      .||+.|...+.|..|+++|++++
T Consensus        67 ~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           67 ICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCchhCCHHHHHHHHHHhcccC
Confidence            88888888888888888888765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.1e-20  Score=126.23  Aligned_cols=89  Identities=37%  Similarity=0.640  Sum_probs=83.1

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCC
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTST  118 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~  118 (226)
                      ++.++|.|++|++.|.+...|..|++.|+++++|.|++|++.|.....|..|+++|+++++|.|+.|++.|..       
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------   76 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN-------   76 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS-------
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC-------
Confidence            4556889999999999999999999999999999999999999999999999999999999999999999998       


Q ss_pred             CCCCCCCccccccccccCCCCCC
Q psy14244        119 HTPTYTKSNLAQHSCMNSHFPKP  141 (226)
Q Consensus       119 ~~~~~~~~~l~~H~~~~~~~~k~  141 (226)
                            ...|..|+++|+ ++++
T Consensus        77 ------~~~l~~H~~~h~-~~~~   92 (96)
T 2dmd_A           77 ------SSQLTVHLRSHT-GDSG   92 (96)
T ss_dssp             ------HHHHHHHHTTCC-SCCC
T ss_pred             ------HHHHHHHHHHhc-CCCC
Confidence                  999999999988 4543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=1.4e-20  Score=129.49  Aligned_cols=91  Identities=32%  Similarity=0.689  Sum_probs=85.3

Q ss_pred             CCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCC
Q psy14244         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH  119 (226)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~  119 (226)
                      ..++|.|++|++.|.....|..|++.|+++++|.|++|++.|.....|..|+++|+++++|.|..|++.|..        
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~--------   85 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ--------   85 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS--------
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC--------
Confidence            345789999999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             CCCCCCccccccccccCCCCCCccC
Q psy14244        120 TPTYTKSNLAQHSCMNSHFPKPYQC  144 (226)
Q Consensus       120 ~~~~~~~~l~~H~~~~~~~~k~~~C  144 (226)
                           ...|..|+++|+ +++||.+
T Consensus        86 -----~~~L~~H~~~H~-~~~~~~~  104 (106)
T 2ee8_A           86 -----SRTLAVHKTLHM-QTSSPTA  104 (106)
T ss_dssp             -----HHHHHHHHHHTT-SCCCCCC
T ss_pred             -----HHHHHHHHHHhC-CCCCCcC
Confidence                 999999999988 6888865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=3.9e-21  Score=125.94  Aligned_cols=81  Identities=38%  Similarity=0.778  Sum_probs=50.3

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhh
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~  150 (226)
                      ||.|++|++.|.+...|..|+++|+++++|.|+.|++.|..             ...|..|++.|+ ++++|.|+.||+.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~   66 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQ-------------KSDMKKHTFIHT-GEKPHKCQVCGKA   66 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESS-------------HHHHHHHHHHHH-TCCCEECTTTSCE
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCC-------------HHHHHHHHHHhc-CCCCCcCCCcchh
Confidence            45566666666666666666666666666666666666665             566666665555 4566666666666


Q ss_pred             hcChhhhhccCCCCC
Q psy14244        151 FGDRMNLISHQCGPE  165 (226)
Q Consensus       151 f~~~~~L~~H~~~h~  165 (226)
                      |...+.|..|+++|+
T Consensus        67 f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           67 FSQSSNLITHSRKHT   81 (82)
T ss_dssp             ESSHHHHHHHHHHHC
T ss_pred             hCChHHHHHHHHhhC
Confidence            666666666665554

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.4e-20  Score=125.67  Aligned_cols=88  Identities=28%  Similarity=0.533  Sum_probs=67.0

Q ss_pred             CCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCC-CCCccCC
Q psy14244         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCD  145 (226)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~-~k~~~C~  145 (226)
                      +++++|.|++|++.|.+...|..|+++|+++++|.|+.|++.|..             ...|..|++.|+.. +++|.|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR-------------KDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESC-------------HHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCC-------------HHHHHHHHHHhcCCCCCceECC
Confidence            466778888888888888888888888877788888888888877             77788887777632 2778888


Q ss_pred             cchhhhcChhhhhccCC-CCCCC
Q psy14244        146 RCSQFFGDRMNLISHQC-GPEDI  167 (226)
Q Consensus       146 ~C~~~f~~~~~L~~H~~-~h~~~  167 (226)
                      +|++.|.....|..|++ .|.++
T Consensus        70 ~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CccchhCCHHHHHHHHHHhcCCC
Confidence            88888888888888874 66654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=2.9e-20  Score=128.78  Aligned_cols=88  Identities=31%  Similarity=0.594  Sum_probs=80.9

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCcc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQ  143 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~  143 (226)
                      ..|+++++|.| .|++.|.+...|..|++.|+++++|.|+.|++.|..             ...|..|++.|+ ++++|.
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~   67 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKM-------------KHHLVGHMKIHT-GIKPYE   67 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESS-------------SHHHHHHHTTTC-CCCCEE
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCC-------------HHHHHHHHHHcC-CCCCee
Confidence            36889999999 899999999999999999999999999999999998             899999998887 689999


Q ss_pred             CCcchhhhcChhhhhccCCCCCC
Q psy14244        144 CDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       144 C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      |++|++.|.....|..|+++|+.
T Consensus        68 C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           68 CNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCcchhcCHHHHHHHHHHccc
Confidence            99999999999999999987654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=2.9e-20  Score=121.74  Aligned_cols=81  Identities=36%  Similarity=0.757  Sum_probs=77.9

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPT  122 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~  122 (226)
                      +|.|++|++.|.+...|..|+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+.|++.|.+           
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-----------   69 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ-----------   69 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESS-----------
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC-----------
Confidence            588999999999999999999999999999999999999999999999999999999999999999998           


Q ss_pred             CCCccccccccccC
Q psy14244        123 YTKSNLAQHSCMNS  136 (226)
Q Consensus       123 ~~~~~l~~H~~~~~  136 (226)
                        .+.|..|+++|+
T Consensus        70 --~~~l~~H~~~H~   81 (82)
T 2kmk_A           70 --SSNLITHSRKHT   81 (82)
T ss_dssp             --HHHHHHHHHHHC
T ss_pred             --hHHHHHHHHhhC
Confidence              999999998876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.76  E-value=7.5e-20  Score=121.93  Aligned_cols=85  Identities=28%  Similarity=0.624  Sum_probs=78.8

Q ss_pred             CccccC--ccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCC
Q psy14244         42 GVHKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH  119 (226)
Q Consensus        42 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~  119 (226)
                      ++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|.+...|..|+++|+++++|.|+.|++.|..        
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~--------   74 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR--------   74 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS--------
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCC--------
Confidence            568887  5999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             CCCCCCccccccccccCCCCC
Q psy14244        120 TPTYTKSNLAQHSCMNSHFPK  140 (226)
Q Consensus       120 ~~~~~~~~l~~H~~~~~~~~k  140 (226)
                           .+.|..|+++|+ +++
T Consensus        75 -----~~~l~~H~~~H~-~~k   89 (90)
T 1a1h_A           75 -----SDERKRHTKIHL-RQK   89 (90)
T ss_dssp             -----HHHHHHHHGGGG-C--
T ss_pred             -----HHHHHHHHHHhc-ccC
Confidence                 999999999988 444

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-19  Score=125.83  Aligned_cols=93  Identities=17%  Similarity=0.254  Sum_probs=79.7

Q ss_pred             eceeeEEeeCCCCcccCccchhHHHhhcCC------------Cc-cccCcccccc--CChhHHhhccCCCCCCCCccccc
Q psy14244         12 SQQTLLCIHGNDNAYKCHQCQRLIFLSANA------------GV-HKCEYCHKVF--DQQSSLLSHNCPQMKPRPYKCDT   76 (226)
Q Consensus        12 ~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~------------~~-~~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~   76 (226)
                      .|..|+++|++++||.|++|++.|.....|            ++ +.|++|++.|  .....|..|+++|++++||.|++
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~   85 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY   85 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSS
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCC
Confidence            457999999999999999999988644332            23 3499999999  89999999999999999999999


Q ss_pred             CccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         77 CEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        77 C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      |++.|.....|..|++.|+......++.
T Consensus        86 C~k~f~~~~~L~~H~~~hh~~~~~~~~~  113 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIKTKHYQKVSGPS  113 (115)
T ss_dssp             SCCBCSSHHHHHHHHHHTTTTTCSCCCC
T ss_pred             CCCccCCHHHHHHHHHHhCCcccCCCCC
Confidence            9999999999999999988766555543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.5e-19  Score=119.90  Aligned_cols=85  Identities=27%  Similarity=0.606  Sum_probs=79.3

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCC--CCccCCCCcccccccCCCC
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI--RPFKCTTCDKSFVNQINPT  116 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--k~~~C~~C~~~f~~~~~~~  116 (226)
                      ++.++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.....|..|+++|+++  ++|.|+.|++.|..     
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~-----   77 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR-----   77 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS-----
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC-----
Confidence            45678999999999999999999999999999999999999999999999999999987  99999999999998     


Q ss_pred             CCCCCCCCCcccccccc-ccC
Q psy14244        117 STHTPTYTKSNLAQHSC-MNS  136 (226)
Q Consensus       117 ~~~~~~~~~~~l~~H~~-~~~  136 (226)
                              ...|..|++ .|.
T Consensus        78 --------~~~L~~H~~~~H~   90 (95)
T 2yt9_A           78 --------PDHLNGHIKQVHS   90 (95)
T ss_dssp             --------HHHHHHHHHHTSC
T ss_pred             --------HHHHHHHHHHhcC
Confidence                    999999986 554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.7e-19  Score=123.34  Aligned_cols=86  Identities=15%  Similarity=0.301  Sum_probs=71.6

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPT  122 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~  122 (226)
                      +|.|++|++.|.....|..|+++|  .++|.|++|++.|.....|..|++ |++++||.|+.|++.|..           
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~-----------   81 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKS-----------   81 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSS-----------
T ss_pred             CeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCC-----------
Confidence            345566777888888888888887  468999999999999999999985 999999999999999988           


Q ss_pred             CCCcccccccc-ccCCCCCCccCC
Q psy14244        123 YTKSNLAQHSC-MNSHFPKPYQCD  145 (226)
Q Consensus       123 ~~~~~l~~H~~-~~~~~~k~~~C~  145 (226)
                        ...|..|++ .|. ++++|.|.
T Consensus        82 --~~~L~~H~~~~H~-~~~~~~~~  102 (107)
T 1wjp_A           82 --SFSIWRHQVEVHN-QNNMAPTS  102 (107)
T ss_dssp             --HHHHHHHHHHTSC-CCCCCCCC
T ss_pred             --HHHHHHHHHHHcC-CCCCCCCC
Confidence              888999987 555 78888774

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.72  E-value=5.5e-19  Score=117.42  Aligned_cols=80  Identities=36%  Similarity=0.787  Sum_probs=52.5

Q ss_pred             ccccCc--cccccCChhHHhhccCCCCCCCCcccc--cCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCC
Q psy14244         43 VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTST  118 (226)
Q Consensus        43 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~  118 (226)
                      +|.|+.  |++.|.+...|..|+++|.++++|.|+  .|++.|.....|..|+++|+++++|.|+.|++.|..       
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------   77 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR-------   77 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESS-------
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCC-------
Confidence            466666  666666666666666666666666665  366666666666666666666666666666666665       


Q ss_pred             CCCCCCCcccccccccc
Q psy14244        119 HTPTYTKSNLAQHSCMN  135 (226)
Q Consensus       119 ~~~~~~~~~l~~H~~~~  135 (226)
                            .+.|..|++.|
T Consensus        78 ------~~~l~~H~~~H   88 (89)
T 2wbs_A           78 ------SDHLALHMKRH   88 (89)
T ss_dssp             ------HHHHHHHGGGG
T ss_pred             ------HHHHHHHHHhh
Confidence                  56666665544

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=7e-19  Score=119.48  Aligned_cols=83  Identities=34%  Similarity=0.642  Sum_probs=56.4

Q ss_pred             CCCccccc--CccccCChhhHHHHHhHhcCCCCccCC--CCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccC
Q psy14244         69 PRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC  144 (226)
Q Consensus        69 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C  144 (226)
                      .++|.|++  |++.|.....|..|+++|+++++|.|+  .|++.|..             ...|..|++.|+ +++||.|
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C   78 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR-------------SDELTRHYRKHT-GAKPFQC   78 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESS-------------HHHHHHHHHHHT-SCCSCBC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCC-------------HHHHHHHHHHhC-CCCCeEC
Confidence            45666665  777777777777777777777777775  47777766             666777766666 5667777


Q ss_pred             CcchhhhcChhhhhccCCCCC
Q psy14244        145 DRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       145 ~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      ++|++.|.....|..|+++|.
T Consensus        79 ~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           79 GVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             SSSCCBCSSHHHHHHHHHHHC
T ss_pred             CCCcCccCCHHHHHHHHHHhC
Confidence            777777777777777766654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.72  E-value=3.1e-18  Score=113.77  Aligned_cols=73  Identities=23%  Similarity=0.503  Sum_probs=65.4

Q ss_pred             CCcccCcc--chhHHHhhc----------CCCccccC--ccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHH
Q psy14244         23 DNAYKCHQ--CQRLIFLSA----------NAGVHKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLN   88 (226)
Q Consensus        23 ~~~~~C~~--C~k~f~~~~----------~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   88 (226)
                      ..+|.|+.  |++.|....          +.++|.|+  .|++.|.....|..|+++|+++++|.|+.|++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            56899999  999886543          34588997  59999999999999999999999999999999999999999


Q ss_pred             HHHhHhc
Q psy14244         89 THQLIHS   95 (226)
Q Consensus        89 ~H~~~h~   95 (226)
                      .|+++|.
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9999884

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.3e-19  Score=121.65  Aligned_cols=84  Identities=30%  Similarity=0.649  Sum_probs=77.2

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCC
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTST  118 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~  118 (226)
                      ++.++|.| .|++.|.+...|..|++.|.++++|.|++|++.|.....|..|+++|+++++|.|+.|++.|..       
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------   77 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW-------   77 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC-------
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC-------
Confidence            34556788 7899999999999999999999999999999999999999999999999999999999999998       


Q ss_pred             CCCCCCCccccccccccC
Q psy14244        119 HTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus       119 ~~~~~~~~~l~~H~~~~~  136 (226)
                            ...|..|++.++
T Consensus        78 ------~~~l~~H~~~~~   89 (110)
T 2csh_A           78 ------RDSFHRHVTSCT   89 (110)
T ss_dssp             ------HHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHcc
Confidence                  899999998766

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.71  E-value=1.5e-18  Score=106.52  Aligned_cols=58  Identities=26%  Similarity=0.567  Sum_probs=55.0

Q ss_pred             CCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+||.|++||+.|...+.|..|+++|++++||.|++||+.|.....|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            5789999999999999999999999999999999999999999999999999999875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.71  E-value=7.4e-20  Score=121.69  Aligned_cols=83  Identities=23%  Similarity=0.562  Sum_probs=73.1

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcch
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCS  148 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~  148 (226)
                      ++||.|++|++.|.....|..|+++|++++||.|+.|++.|..             ...|..|++.++  ..+|.|+.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~h~--~~~~~c~~C~   65 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR-------------SDERKRHRDIQH--ILPILEDKVE   65 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS-------------HHHHHHHHHHHT--HHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCC-------------HHHHHHHHHHhC--CCcchHHHHH
Confidence            4689999999999999999999999999999999999999988             889999988887  4889999999


Q ss_pred             hhhcChhhhhccCCCCCC
Q psy14244        149 QFFGDRMNLISHQCGPED  166 (226)
Q Consensus       149 ~~f~~~~~L~~H~~~h~~  166 (226)
                      +.|.....|..|++.+++
T Consensus        66 ~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           66 ELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHH
Confidence            999999999999865543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=8.6e-18  Score=110.85  Aligned_cols=80  Identities=24%  Similarity=0.423  Sum_probs=69.7

Q ss_pred             HHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCC----CCccCCCCcccccccCCCCCCCCCCCCCcccccccc
Q psy14244         58 SLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI----RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC  133 (226)
Q Consensus        58 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~  133 (226)
                      +|..|+++|+++++|.|++|++.|.....|..|++.|++.    ++|.|+.|++.|..             ...|..|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~-------------~~~L~~H~~   68 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR-------------RNTMARHAD   68 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESC-------------HHHHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCC-------------HHHHHHHHH
Confidence            4778999999999999999999999999999999887654    78999999999987             888899988


Q ss_pred             ccCCCCCCccCCcchhhh
Q psy14244        134 MNSHFPKPYQCDRCSQFF  151 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f  151 (226)
                      .|+ +++++.|..||..|
T Consensus        69 ~h~-~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           69 NCA-GPDGVEGENSGPSS   85 (86)
T ss_dssp             HCC-CCCSCCCCCCCCCC
T ss_pred             Hcc-CCCCcccCCCCCCC
Confidence            887 68888898888765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=7.4e-18  Score=103.42  Aligned_cols=55  Identities=31%  Similarity=0.744  Sum_probs=53.4

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (226)
                      |+||.|++||+.|.....|..|+++|++++||.|+.|++.|..             .+.|..|+++|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~-------------~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD-------------QSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS-------------HHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC-------------HHHHHHHhCccC
Confidence            7899999999999999999999999999999999999999998             999999999988

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=7.2e-18  Score=114.41  Aligned_cols=84  Identities=35%  Similarity=0.760  Sum_probs=78.3

Q ss_pred             CCCccccCc--cccccCChhHHhhccCCCCCCCCcccc--cCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCC
Q psy14244         40 NAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINP  115 (226)
Q Consensus        40 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~  115 (226)
                      ..++|.|.+  |++.|.....|..|+++|.++++|.|+  .|++.|.....|..|+++|+++++|.|+.|++.|..    
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----   87 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSR----   87 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSS----
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCC----
Confidence            345788986  999999999999999999999999996  699999999999999999999999999999999998    


Q ss_pred             CCCCCCCCCCccccccccccC
Q psy14244        116 TSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus       116 ~~~~~~~~~~~~l~~H~~~~~  136 (226)
                               ...|..|+++|.
T Consensus        88 ---------~~~l~~H~~~H~   99 (100)
T 2ebt_A           88 ---------SDHLALHMKRHQ   99 (100)
T ss_dssp             ---------HHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHhC
Confidence                     999999998775

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.2e-17  Score=106.42  Aligned_cols=72  Identities=24%  Similarity=0.565  Sum_probs=66.1

Q ss_pred             cCCCccccCc--cccccCChhHHhhccC-CCCCCCCccccc--CccccCChhhHHHHHhHhcCCCCccCCCCccccc
Q psy14244         39 ANAGVHKCEY--CHKVFDQQSSLLSHNC-PQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (226)
Q Consensus        39 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (226)
                      ++.++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.....|..|+++|++++||.|+.|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3445677776  9999999999999999 799999999999  9999999999999999999999999999999983

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.5e-17  Score=106.92  Aligned_cols=72  Identities=32%  Similarity=0.557  Sum_probs=66.9

Q ss_pred             CCCCCccccc--CccccCChhhHHHHHh-HhcCCCCccCCC--CcccccccCCCCCCCCCCCCCccccccccccCCCCCC
Q psy14244         67 MKPRPYKCDT--CEKSFTNSQNLNTHQL-IHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (226)
Q Consensus        67 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~  141 (226)
                      +++++|.|..  |++.|.+...|..|++ .|+++++|.|+.  |++.|..             ...|..|+++|+ +++|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~-------------~~~L~~H~~~H~-~~~~   68 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF-------------KKHLKEHMKLHS-DTRD   68 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESS-------------HHHHHHHHHHHH-TSCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCC-------------HHHHHHHHHHhC-CCCC
Confidence            5778999987  9999999999999999 699999999999  9999998             999999999888 7999


Q ss_pred             ccCCcchhhhc
Q psy14244        142 YQCDRCSQFFG  152 (226)
Q Consensus       142 ~~C~~C~~~f~  152 (226)
                      |.|++||+.|.
T Consensus        69 ~~C~~C~k~F~   79 (79)
T 2dlk_A           69 YICEFSGPSSG   79 (79)
T ss_dssp             CSCCSSSCCCC
T ss_pred             eeCCCCCCCCC
Confidence            99999999984

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.64  E-value=1.6e-17  Score=109.17  Aligned_cols=77  Identities=30%  Similarity=0.628  Sum_probs=51.0

Q ss_pred             Cccc--ccCccccCChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc
Q psy14244         71 PYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR  146 (226)
Q Consensus        71 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~  146 (226)
                      ||.|  +.|++.|.....|..|+++|++++||.|+.  |++.|..             ...|..|+++|++    |.|+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~~----~~C~~   63 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL-------------PSRLKRHEKVHAG----YPCKK   63 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESS-------------HHHHHHHHHHHHS----EECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCC-------------HHHHHHHHHHhCC----CCCCC
Confidence            4566  666666666666666666666666666666  6666666             6666666666652    66666


Q ss_pred             ---chhhhcChhhhhccCCCC
Q psy14244        147 ---CSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       147 ---C~~~f~~~~~L~~H~~~h  164 (226)
                         |++.|...+.|..|+++|
T Consensus        64 ~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           64 DDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             CSSCCCEESSHHHHHHHHHHC
T ss_pred             CCCCCCccCCHHHHHHHHHhc
Confidence               777776666776666554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.6e-17  Score=106.04  Aligned_cols=70  Identities=23%  Similarity=0.361  Sum_probs=53.3

Q ss_pred             hhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCC
Q psy14244         85 QNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus        85 ~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h  164 (226)
                      ..|..|+++|++++||.|+.|++.|..             ...|..        +++|.|+.||+.|...+.|..|+++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~-------------~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H   62 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIR-------------RSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNE   62 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEEC-------------CCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCC-------------HHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhh
Confidence            345667777777778888888888876             555554        57788888888888888888888888


Q ss_pred             CCCCCCcccch
Q psy14244        165 EDIKPNVDNLQ  175 (226)
Q Consensus       165 ~~~~~~~c~~~  175 (226)
                      ++++||.|++|
T Consensus        63 ~~~~~~~C~~C   73 (73)
T 2ctu_A           63 SGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCSSCCCC
T ss_pred             cCCCCCCCCCC
Confidence            88888888765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=1.9e-18  Score=114.83  Aligned_cols=81  Identities=19%  Similarity=0.403  Sum_probs=75.9

Q ss_pred             CccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCC
Q psy14244         42 GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTP  121 (226)
Q Consensus        42 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~  121 (226)
                      ++|.|++|++.|.....|..|+++|++++||.|+.|++.|.....|..|+++|++ .+|.|+.|++.|..          
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~----------   70 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSK----------   70 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHH----------
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHH----------
Confidence            5789999999999999999999999999999999999999999999999999885 78999999999998          


Q ss_pred             CCCCccccccccccC
Q psy14244        122 TYTKSNLAQHSCMNS  136 (226)
Q Consensus       122 ~~~~~~l~~H~~~~~  136 (226)
                         ...|..|++..+
T Consensus        71 ---~~~L~~H~~~~h   82 (88)
T 1llm_C           71 ---NYHLENEVARLK   82 (88)
T ss_dssp             ---HHHHHHHHHHHH
T ss_pred             ---HhhhHHHHHHHH
Confidence               899999987654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2e-16  Score=102.27  Aligned_cols=67  Identities=37%  Similarity=0.763  Sum_probs=40.8

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCcc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQ  143 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~  143 (226)
                      ..+.++++|.|++|++.|.....|..|+++|++++||.|+.|++.|..             ...|..|+++|+ +++||.
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~H~-~~~p~~   76 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ-------------RSHLIGHHRVHT-GSGPSS   76 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS-------------HHHHHHHGGGSC-CCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC-------------HHHHHHHHHHhC-CCCCCC
Confidence            344555666666666666666666666666666666666666666665             556666665555 455665


Q ss_pred             C
Q psy14244        144 C  144 (226)
Q Consensus       144 C  144 (226)
                      |
T Consensus        77 C   77 (77)
T 2cot_A           77 G   77 (77)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.2e-16  Score=101.22  Aligned_cols=63  Identities=33%  Similarity=0.646  Sum_probs=59.4

Q ss_pred             CCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      +.++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            345788899999999999999999999999999999999999999999999999999999988

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.62  E-value=3.6e-17  Score=107.46  Aligned_cols=78  Identities=26%  Similarity=0.577  Sum_probs=73.6

Q ss_pred             cccc--CccccccCChhHHhhccCCCCCCCCccccc--CccccCChhhHHHHHhHhcCCCCccCCC---CcccccccCCC
Q psy14244         43 VHKC--EYCHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT---CDKSFVNQINP  115 (226)
Q Consensus        43 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~---C~~~f~~~~~~  115 (226)
                      +|.|  +.||+.|.....|..|+++|+++++|.|++  |++.|.....|..|+++|++   |.|+.   |++.|..    
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~----   73 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKT----   73 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESS----
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCC----
Confidence            5789  899999999999999999999999999988  99999999999999999998   99999   9999998    


Q ss_pred             CCCCCCCCCCccccccccccC
Q psy14244        116 TSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus       116 ~~~~~~~~~~~~l~~H~~~~~  136 (226)
                               .+.|..|++.++
T Consensus        74 ---------~~~l~~H~~~hh   85 (85)
T 2j7j_A           74 ---------WTLYLKHVAECH   85 (85)
T ss_dssp             ---------HHHHHHHHHHCC
T ss_pred             ---------HHHHHHHHHhcC
Confidence                     899999987764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.7e-16  Score=104.54  Aligned_cols=80  Identities=24%  Similarity=0.376  Sum_probs=69.9

Q ss_pred             eceeeEEeeCCCCcccCccchhHHHhhcCCCccccCccccccCChhHHhhccCCCCCC----CCcccccCccccCChhhH
Q psy14244         12 SQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNL   87 (226)
Q Consensus        12 ~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l   87 (226)
                      ++..|+++|++++||.|                  ++|++.|.....|..|++.|+++    ++|.|++|++.|.....|
T Consensus         2 s~~~H~~~H~~~k~~~C------------------~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L   63 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYAC------------------SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM   63 (86)
T ss_dssp             TTTCCSTTCCCCCCEEC------------------SSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHH
T ss_pred             CcccccceecCCCCCcC------------------CCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHH
Confidence            45789999988877654                  66777889999999998876655    789999999999999999


Q ss_pred             HHHHhHhcCCCCccCCCCcccc
Q psy14244         88 NTHQLIHSGIRPFKCTTCDKSF  109 (226)
Q Consensus        88 ~~H~~~h~~~k~~~C~~C~~~f  109 (226)
                      ..|+++|++++++.|..|+..|
T Consensus        64 ~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           64 ARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHccCCCCcccCCCCCCC
Confidence            9999999999999999999765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.5e-17  Score=112.78  Aligned_cols=57  Identities=18%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             ChhHHhhccCCCCCCCCcccccCccccC-ChhhHHHHHhHhcC-CCCccCCCCcccccc
Q psy14244         55 QQSSLLSHNCPQMKPRPYKCDTCEKSFT-NSQNLNTHQLIHSG-IRPFKCTTCDKSFVN  111 (226)
Q Consensus        55 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~k~~~C~~C~~~f~~  111 (226)
                      ....+..|+++|.++++|.|++|++.|. ....|..|+++|++ +++|.|.+|++.|..
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~   66 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS   66 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred             CCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCC
Confidence            3344455555555555555555555555 55555555555555 555555555555554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=3.2e-16  Score=106.64  Aligned_cols=70  Identities=21%  Similarity=0.330  Sum_probs=63.2

Q ss_pred             hcCCCccccCccccccCChhHHhhccC-CC---CCCCCcccccCccccCChhhHHHH-HhHhcCCCCccCCCCcc
Q psy14244         38 SANAGVHKCEYCHKVFDQQSSLLSHNC-PQ---MKPRPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKCTTCDK  107 (226)
Q Consensus        38 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~k~~~C~~C~~  107 (226)
                      ..+.++|.|+.||+.|...+.|..|++ .|   .+++||.|++||+.|.....|..| +++|++++||.|.++..
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            456678899999999999999999997 58   678999999999999999999999 89999999999998553

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-16  Score=102.01  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             ChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccc
Q psy14244         55 QQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM  134 (226)
Q Consensus        55 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~  134 (226)
                      +...|..|+++|.++++|.|++|++.|.....|..       +++|.|+.|++.|..             .+.|..|+++
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~-------------~~~l~~H~~~   61 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQ-------------EAALNKDEGN   61 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSC-------------CCSSCCCSSC
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcC-------------HHHHHHHHHh
Confidence            34678999999999999999999999999888765       789999999999998             9999999999


Q ss_pred             cCCCCCCccCCcc
Q psy14244        135 NSHFPKPYQCDRC  147 (226)
Q Consensus       135 ~~~~~k~~~C~~C  147 (226)
                      |+ +++||.|++|
T Consensus        62 H~-~~~~~~C~~C   73 (73)
T 2ctu_A           62 ES-GKKTSGPSSG   73 (73)
T ss_dssp             CC-CCCCSSCCCC
T ss_pred             hc-CCCCCCCCCC
Confidence            88 7999999988

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=4.9e-16  Score=105.68  Aligned_cols=71  Identities=13%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHh-Hh---cCCCCccCCCCcccccccCCCCCCCCCCCCCcccccc-ccccCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IH---SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH-SCMNSHF  138 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H-~~~~~~~  138 (226)
                      ..-+|++||.|+.|++.|.....|..|++ +|   ++++||.|..|++.|..             .+.|..| +++|. +
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~-------------~~~L~~H~~r~Ht-g   76 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR-------------YDALSEHNLKYHP-G   76 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESS-------------THHHHTHHHHTST-T
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCC-------------HHHHHHHHHHhcC-C
Confidence            34568999999999999999999999998 58   67899999999999998             9999999 78888 7


Q ss_pred             CCCccCCcch
Q psy14244        139 PKPYQCDRCS  148 (226)
Q Consensus       139 ~k~~~C~~C~  148 (226)
                      ++||.|.++.
T Consensus        77 ekpy~C~~~~   86 (102)
T 2ghf_A           77 EENFKLTMVK   86 (102)
T ss_dssp             CCCEEEEECC
T ss_pred             CCCeeCCccc
Confidence            9999998754

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=6.4e-16  Score=99.81  Aligned_cols=72  Identities=29%  Similarity=0.526  Sum_probs=64.3

Q ss_pred             HHhhccCCCCCCCCcccccCccccCChhhHHHHHh-HhcCC-CCccCCCCcccccccCCCCCCCCCCCCCcccccccccc
Q psy14244         58 SLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGI-RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (226)
Q Consensus        58 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (226)
                      +|.+|+++|++++||.|++|++.|.....|..|++ .|.++ ++|.|+.|++.|..             ...|..|++.+
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~~   68 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR-------------KSDLGVHLRKQ   68 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESS-------------HHHHHHHHHHT
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCC-------------HHHHHHHHHHh
Confidence            46789999999999999999999999999999997 57764 89999999999998             99999999988


Q ss_pred             CCCCCCc
Q psy14244        136 SHFPKPY  142 (226)
Q Consensus       136 ~~~~k~~  142 (226)
                      +..+.|.
T Consensus        69 H~~~~p~   75 (77)
T 2ct1_A           69 HSYSGPS   75 (77)
T ss_dssp             SCCSCCC
T ss_pred             CCCCCCC
Confidence            7666553

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.57  E-value=1.4e-17  Score=118.38  Aligned_cols=84  Identities=19%  Similarity=0.311  Sum_probs=66.6

Q ss_pred             CCCCcccccCccccC------ChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCC
Q psy14244         68 KPRPYKCDTCEKSFT------NSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (226)
Q Consensus        68 ~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~  141 (226)
                      ..+.+.|++|++.|.      ....|..|+ .|++++||.|+.|++.|..             ...|..|+++|   ++|
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~-------------~~~l~~H~~~H---~~~  100 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSS-------------SVSLKQHIRYT---EHT  100 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESS-------------HHHHHHHHHHT---CCC
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCC-------------HhHHHHHHHHC---CCC
Confidence            345566776665554      556666666 5888899999999999988             88899998876   688


Q ss_pred             ccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      |.|+.||+.|...+.|..|+++|+++.
T Consensus       101 ~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A          101 KVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            999999999999999999998888763

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.6e-16  Score=107.70  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             ccCChhhHHHHHhHhcCCCCccCCCCccccc-ccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhh
Q psy14244         80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV-NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLI  158 (226)
Q Consensus        80 ~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~-~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~  158 (226)
                      .+.....+..|+++|+++++|.|+.|++.|. .             ...|..|+++|+..+++|.|++|++.|.....|.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~-------------~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~   71 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKT-------------LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN   71 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSC-------------SHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHH
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhh-------------HHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHH
Confidence            4556667788999999999999999999998 8             8999999988883288999999999999999999


Q ss_pred             ccCCCCCCCCCCcccc
Q psy14244        159 SHQCGPEDIKPNVDNL  174 (226)
Q Consensus       159 ~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|++++|.....
T Consensus        72 ~H~~~h~~~kp~~~~~   87 (98)
T 2gqj_A           72 YHTMAEHSAKPSDAEA   87 (98)
T ss_dssp             HHHHHHSCSCSSCCCC
T ss_pred             HHHHHHcCCCCCCCCC
Confidence            9999999998865443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.56  E-value=1.3e-15  Score=97.64  Aligned_cols=62  Identities=34%  Similarity=0.735  Sum_probs=58.0

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCc
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF  100 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~  100 (226)
                      .+.++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            44567889999999999999999999999999999999999999999999999999999986

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.6e-16  Score=105.47  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             ccCChhhHHHHHhHhcCCCCccCCCCcccc-cccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhh
Q psy14244         80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSF-VNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLI  158 (226)
Q Consensus        80 ~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f-~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~  158 (226)
                      .|.....|..|.+.++++++|.|+.|++.| ..             ...|..|++.|  +++||.|++||+.|...+.|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~-------------~~~L~~H~~~h--~~k~~~C~~Cgk~F~~~~~L~   79 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKT-------------IEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMK   79 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESS-------------HHHHHHHHHHH--CCCCCCCSSSCCCCSSHHHHH
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccC-------------HHHHHHHHHHH--CCCCeECCCCCCeeCCHHHHH
Confidence            455666677777777777777777777777 66             67777777666  467777777777777777777


Q ss_pred             cc-CCCCCCCC
Q psy14244        159 SH-QCGPEDIK  168 (226)
Q Consensus       159 ~H-~~~h~~~~  168 (226)
                      .| +++|.++.
T Consensus        80 ~H~~~~H~~~p   90 (96)
T 2ctd_A           80 YHVMANHNSLP   90 (96)
T ss_dssp             HHHHHHTCCCS
T ss_pred             HHhHHhcCCCC
Confidence            77 66776543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.54  E-value=2.6e-15  Score=96.12  Aligned_cols=65  Identities=37%  Similarity=0.815  Sum_probs=59.9

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~  142 (226)
                      ..+.++++|.|+.|++.|.....|..|+++|+++++|.|..|++.|..             ...|..|+++|+ +++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~H~-~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR-------------PANLKTHTRIHS-GEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC-------------HHHHHHHHHHHC-CSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC-------------HHHHHHHHHhcC-CCCCC
Confidence            456788999999999999999999999999999999999999999998             899999999888 67776

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.53  E-value=3.1e-15  Score=98.25  Aligned_cols=57  Identities=19%  Similarity=0.389  Sum_probs=38.7

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCcccccccc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC  133 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~  133 (226)
                      ..+.+.++|.|++|++.|.....|..|+++|++++||.|+.|++.|..             ...|.+|++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~-------------~~~L~~H~~   77 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS-------------SPGLTRHIN   77 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS-------------HHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC-------------HHHHHHhCc
Confidence            445556667777777777777777777777777777777777777766             666676653

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.51  E-value=9.6e-17  Score=114.07  Aligned_cols=104  Identities=15%  Similarity=0.266  Sum_probs=82.6

Q ss_pred             EeeCCCCcccCccchhH--HHhh-----cCC----CccccCccccccC------ChhHHhhccCCCCCCCCcccccCccc
Q psy14244         18 CIHGNDNAYKCHQCQRL--IFLS-----ANA----GVHKCEYCHKVFD------QQSSLLSHNCPQMKPRPYKCDTCEKS   80 (226)
Q Consensus        18 ~~h~~~~~~~C~~C~k~--f~~~-----~~~----~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~~   80 (226)
                      .++.|.++|.|...+..  |...     ..+    +.+.|++|++.|.      ....|..|+ .|++++||.|++|++.
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~   83 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMP   83 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCE
T ss_pred             hhcccccccccccCCeeeeecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcc
Confidence            45778889988765432  2111     111    2467888877766      556667776 6899999999999999


Q ss_pred             cCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCC
Q psy14244         81 FTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH  137 (226)
Q Consensus        81 f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~  137 (226)
                      |.....|..|+++|  ++||.|+.|++.|..             .+.|..|++.|++
T Consensus        84 f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~-------------~~~l~~H~~~h~~  125 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT--EHTKVCPVCKKEFTS-------------TDSALDHVCKKHN  125 (129)
T ss_dssp             ESSHHHHHHHHHHT--CCCCBCTTTCCBCSS-------------HHHHHHHHHHTTC
T ss_pred             cCCHhHHHHHHHHC--CCCCCCCCCCcccCC-------------HHHHHHHHHHHCC
Confidence            99999999999999  899999999999998             9999999998883

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=4.3e-15  Score=94.61  Aligned_cols=62  Identities=34%  Similarity=0.719  Sum_probs=52.9

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (226)
                      +.++|+++++|.|++|++.|.....|..|+++|++++||.|+.|++.|..             ...|..|+++|+
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~H~   66 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ-------------NSGLINHQRIHT   66 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS-------------HHHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC-------------HHHHHHHHHhcC
Confidence            45678888888888888888888888888888888888888888888887             888888888776

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=7.9e-15  Score=92.81  Aligned_cols=63  Identities=22%  Similarity=0.377  Sum_probs=58.0

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCcc
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK  101 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (226)
                      ++.++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++|..
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            455678899999999999999999999999999999999999999999999999999988753

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.4e-15  Score=101.45  Aligned_cols=73  Identities=16%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             ccccCChhHHhhccCCCCCCCCcccccCcccc-CChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccc
Q psy14244         50 HKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSF-TNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL  128 (226)
Q Consensus        50 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l  128 (226)
                      ...|.....|..|++.|.++++|.|+.|++.| .....|..|+++| +++||.|..|++.|..             ...|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~-------------~~~L   78 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRS-------------LAGM   78 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSS-------------HHHH
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCC-------------HHHH
Confidence            44667778888888888899999999999999 8999999999999 9999999999999998             8899


Q ss_pred             ccc-ccccC
Q psy14244        129 AQH-SCMNS  136 (226)
Q Consensus       129 ~~H-~~~~~  136 (226)
                      ..| +++|.
T Consensus        79 ~~H~~~~H~   87 (96)
T 2ctd_A           79 KYHVMANHN   87 (96)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHhHHhcC
Confidence            999 77776

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=5.4e-15  Score=93.61  Aligned_cols=64  Identities=30%  Similarity=0.424  Sum_probs=59.5

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~  142 (226)
                      +|.++++|.|++|++.|.....|..|+++|+++++|.|+.|++.|..             ...|..|++.|+ +++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~h~-~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ-------------PSNLSKHMKKFH-GDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS-------------HHHHHHHHHHHH-SSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC-------------HHHHHHHHHHHh-CCCCC
Confidence            57889999999999999999999999999999999999999999998             899999999888 56654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=7.6e-15  Score=96.39  Aligned_cols=61  Identities=25%  Similarity=0.419  Sum_probs=55.5

Q ss_pred             hcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHH-hHhcCCC
Q psy14244         38 SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ-LIHSGIR   98 (226)
Q Consensus        38 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~k   98 (226)
                      .+..++|.|++||+.|.....|..|+++|++++||.|++|++.|.....|..|+ ++|++|+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            345668999999999999999999999999999999999999999999999997 4688764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.1e-16  Score=101.30  Aligned_cols=68  Identities=18%  Similarity=0.430  Sum_probs=59.7

Q ss_pred             HHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCcccccccc-ccCCCCCCccCCcchhhhcChhhhhccCCCCC
Q psy14244         87 LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC-MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus        87 l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~-~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      |..|+++|++++||.|+.|++.|..             ...|..|++ .|...+++|.|++|++.|.....|..|+++++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~-------------~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQ-------------SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESC-------------HHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCccccccCCCCCeECCCcCchhCC-------------HHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            4568999999999999999999998             999999997 45533489999999999999999999999765


Q ss_pred             CC
Q psy14244        166 DI  167 (226)
Q Consensus       166 ~~  167 (226)
                      +.
T Consensus        70 ~~   71 (77)
T 2ct1_A           70 SY   71 (77)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.48  E-value=1.2e-14  Score=88.06  Aligned_cols=56  Identities=29%  Similarity=0.457  Sum_probs=53.7

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +|.|+.|++.|.....|..|+++|+++++|.|+.|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58999999999999999999999999999999999999999999999999998875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.5e-14  Score=92.41  Aligned_cols=67  Identities=21%  Similarity=0.307  Sum_probs=54.4

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcC---CCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG---IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~  141 (226)
                      +|+++++|.|++|++.|.....|..|+++|++   +++|.|..|++.|..             ...|..|++.++.++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK-------------PDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS-------------HHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC-------------HHHHHHHHHHhCCCCCC
Confidence            47888899999999999999999999988885   788999999999987             88888888655545665


Q ss_pred             ccC
Q psy14244        142 YQC  144 (226)
Q Consensus       142 ~~C  144 (226)
                      ...
T Consensus        68 ~~~   70 (78)
T 2d9h_A           68 APQ   70 (78)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.7e-15  Score=94.75  Aligned_cols=62  Identities=21%  Similarity=0.460  Sum_probs=56.5

Q ss_pred             hHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccc-cCCCCCCccCCcchhhhcChhhhhccCCCCCC
Q psy14244         92 LIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM-NSHFPKPYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus        92 ~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~-~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      ++|++++||.|+.|++.|..             ...|..|++. |..+++||.|+.||+.|...+.|..|+++|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~-------------~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTH-------------ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESS-------------HHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCC-------------HHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            56899999999999999998             9999999988 53478999999999999999999999988876

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.9e-14  Score=87.09  Aligned_cols=55  Identities=29%  Similarity=0.570  Sum_probs=33.0

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (226)
                      +++|.|++|++.|.....|..|+++|++++||.|+.|++.|..             ...|..|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ-------------KTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS-------------HHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC-------------HHHHHHHHHHhc
Confidence            4566666666666666666666666666666666666666665             566666655543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=3.9e-14  Score=90.12  Aligned_cols=58  Identities=33%  Similarity=0.578  Sum_probs=52.9

Q ss_pred             CCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|+++.
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            3456777888899999999999999999999999999999999999999999998865

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.43  E-value=5.8e-14  Score=84.93  Aligned_cols=54  Identities=33%  Similarity=0.706  Sum_probs=51.6

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCC
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH  137 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~  137 (226)
                      ||.|++|++.|.....|..|+++|++++||.|+.|++.|..             .+.|..|+++|++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT-------------KGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESS-------------HHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcC-------------HHHHHHHHHHhcc
Confidence            68999999999999999999999999999999999999998             8999999998884

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.43  E-value=2.6e-14  Score=86.51  Aligned_cols=56  Identities=29%  Similarity=0.547  Sum_probs=50.6

Q ss_pred             CCccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcC
Q psy14244         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      .++|.|++|++.|.+...|..|+++|++++||.|++|++.|.....|..|+++|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999864

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=7.9e-14  Score=93.39  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             CCccccCccccccCChhHHhhccCC-CCCCCC--------cccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         41 AGVHKCEYCHKVFDQQSSLLSHNCP-QMKPRP--------YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      ...+.|+.|++.|.....|..|+++ |.++++        |.|++|++.|.....|..|+++|++++||.|+
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3457899999999999999999987 998887        99999999999999999999999999999996

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.4e-14  Score=90.52  Aligned_cols=60  Identities=23%  Similarity=0.581  Sum_probs=44.7

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhH-h-cCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLI-H-SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (226)
                      ++|++++||.|+.|++.|.....|..|++. | ++++||.|+.|++.|..             .+.|..|++.++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~~H   64 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR-------------KDNMTAHVKIIH   64 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESC-------------HHHHHHHHHHHT
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCC-------------HHHHHHHHHHHc
Confidence            456677777777777777777777777776 5 47777777777777776             777777776665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=8.8e-15  Score=94.60  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=60.8

Q ss_pred             HhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCC--CCCCccCCcchhhhcChhhhhccC-CCCCCCCC
Q psy14244         93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH--FPKPYQCDRCSQFFGDRMNLISHQ-CGPEDIKP  169 (226)
Q Consensus        93 ~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~--~~k~~~C~~C~~~f~~~~~L~~H~-~~h~~~~~  169 (226)
                      .|++++||.|..|++.|..             ...|..|++.|.+  ++++|.|++|++.|.....|..|+ ..|.++.|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~-------------~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQ-------------KASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESS-------------HHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCC-------------HHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            3789999999999999998             9999999999884  389999999999999999999999 67877777


Q ss_pred             Ccccc
Q psy14244        170 NVDNL  174 (226)
Q Consensus       170 ~~c~~  174 (226)
                      .....
T Consensus        68 ~~~~~   72 (78)
T 2d9h_A           68 APQES   72 (78)
T ss_dssp             CCSSS
T ss_pred             Ccccc
Confidence            65443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.2e-13  Score=84.54  Aligned_cols=56  Identities=34%  Similarity=0.671  Sum_probs=52.0

Q ss_pred             CccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHH-hHhcCC
Q psy14244         42 GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ-LIHSGI   97 (226)
Q Consensus        42 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~   97 (226)
                      ++|.|+.|++.|.....|..|+++|+++++|.|+.|++.|.....|..|+ ++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            36899999999999999999999999999999999999999999999997 678765

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.40  E-value=2.8e-13  Score=78.24  Aligned_cols=45  Identities=29%  Similarity=0.625  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            689999999999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.9e-13  Score=78.17  Aligned_cols=45  Identities=33%  Similarity=0.639  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.7e-13  Score=78.22  Aligned_cols=45  Identities=29%  Similarity=0.522  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.40  E-value=2.8e-13  Score=78.20  Aligned_cols=45  Identities=27%  Similarity=0.557  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3.4e-13  Score=77.84  Aligned_cols=45  Identities=36%  Similarity=0.547  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.7e-13  Score=78.29  Aligned_cols=45  Identities=38%  Similarity=0.596  Sum_probs=43.6

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999988

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.6e-13  Score=78.35  Aligned_cols=45  Identities=36%  Similarity=0.678  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.9e-13  Score=78.11  Aligned_cols=45  Identities=36%  Similarity=0.713  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.3e-13  Score=78.61  Aligned_cols=45  Identities=24%  Similarity=0.381  Sum_probs=43.6

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            689999999999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.6e-13  Score=77.73  Aligned_cols=45  Identities=31%  Similarity=0.641  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.39  E-value=4.1e-13  Score=77.53  Aligned_cols=45  Identities=29%  Similarity=0.600  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.5e-13  Score=77.76  Aligned_cols=45  Identities=31%  Similarity=0.507  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.9e-13  Score=78.14  Aligned_cols=45  Identities=33%  Similarity=0.640  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.2e-13  Score=77.98  Aligned_cols=45  Identities=29%  Similarity=0.558  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.38  E-value=2.8e-13  Score=78.20  Aligned_cols=45  Identities=29%  Similarity=0.575  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.38  E-value=3.4e-13  Score=77.83  Aligned_cols=45  Identities=31%  Similarity=0.599  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.1e-13  Score=78.03  Aligned_cols=45  Identities=38%  Similarity=0.647  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.2e-13  Score=77.99  Aligned_cols=45  Identities=33%  Similarity=0.638  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=76.96  Aligned_cols=44  Identities=25%  Similarity=0.486  Sum_probs=42.6

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            78899999999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.6e-13  Score=77.74  Aligned_cols=45  Identities=33%  Similarity=0.674  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4e-13  Score=77.54  Aligned_cols=45  Identities=36%  Similarity=0.680  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4e-13  Score=77.54  Aligned_cols=45  Identities=36%  Similarity=0.580  Sum_probs=43.6

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.2e-13  Score=78.01  Aligned_cols=45  Identities=29%  Similarity=0.524  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.3e-13  Score=77.92  Aligned_cols=45  Identities=36%  Similarity=0.665  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=5.4e-13  Score=77.02  Aligned_cols=45  Identities=29%  Similarity=0.567  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4e-13  Score=77.56  Aligned_cols=45  Identities=33%  Similarity=0.541  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            689999999999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3e-13  Score=78.07  Aligned_cols=45  Identities=31%  Similarity=0.636  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5e-13  Score=77.12  Aligned_cols=45  Identities=29%  Similarity=0.594  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=3.9e-13  Score=77.59  Aligned_cols=45  Identities=33%  Similarity=0.630  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=2.2e-13  Score=86.66  Aligned_cols=66  Identities=32%  Similarity=0.707  Sum_probs=55.6

Q ss_pred             HHhhc-cCCCCCCCCcccc--cCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccc
Q psy14244         58 SLLSH-NCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM  134 (226)
Q Consensus        58 ~l~~H-~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~  134 (226)
                      .|..| ..+|.++++|.|+  .|++.|.....|..|+++|+++++|.|+.|++.|..             .+.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~   71 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-------------SDHLTTHIRT   71 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HHHHHHHHTT
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCC-------------HHHHHHHHHh
Confidence            34444 3467889999997  599999999999999999999999999999999998             8899999877


Q ss_pred             cC
Q psy14244        135 NS  136 (226)
Q Consensus       135 ~~  136 (226)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.8e-13  Score=77.60  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=3.7e-13  Score=77.68  Aligned_cols=45  Identities=36%  Similarity=0.674  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.3e-13  Score=77.40  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.37  E-value=4.5e-13  Score=77.30  Aligned_cols=45  Identities=33%  Similarity=0.567  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=3.7e-13  Score=77.69  Aligned_cols=45  Identities=31%  Similarity=0.662  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4e-13  Score=77.56  Aligned_cols=45  Identities=29%  Similarity=0.550  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5.7e-13  Score=76.92  Aligned_cols=45  Identities=29%  Similarity=0.527  Sum_probs=43.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5.2e-13  Score=77.06  Aligned_cols=45  Identities=31%  Similarity=0.677  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.5e-13  Score=77.33  Aligned_cols=45  Identities=29%  Similarity=0.583  Sum_probs=43.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.2e-13  Score=76.79  Aligned_cols=45  Identities=31%  Similarity=0.603  Sum_probs=43.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478999999999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.2e-13  Score=77.96  Aligned_cols=45  Identities=29%  Similarity=0.604  Sum_probs=43.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.35  E-value=6.9e-13  Score=76.57  Aligned_cols=45  Identities=33%  Similarity=0.560  Sum_probs=43.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478999999999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.2e-13  Score=76.45  Aligned_cols=45  Identities=29%  Similarity=0.541  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.3e-13  Score=76.42  Aligned_cols=45  Identities=20%  Similarity=0.363  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=6.1e-13  Score=76.75  Aligned_cols=45  Identities=38%  Similarity=0.680  Sum_probs=43.1

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.6e-13  Score=76.93  Aligned_cols=45  Identities=33%  Similarity=0.670  Sum_probs=43.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=8.4e-13  Score=76.19  Aligned_cols=45  Identities=27%  Similarity=0.507  Sum_probs=43.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=4.1e-14  Score=90.16  Aligned_cols=65  Identities=26%  Similarity=0.583  Sum_probs=55.8

Q ss_pred             HHHHHh-HhcCCCCccCC--CCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCC
Q psy14244         87 LNTHQL-IHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus        87 l~~H~~-~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      +..|+. +|+++++|.|+  .|++.|..             ...|..|++.|. +++||.|++||+.|...+.|..|+++
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSR-------------SDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESS-------------HHHHHHHHHHHH-CCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCC-------------HHHHHHHHHhhC-CCCCeECCCCCchhCCHHHHHHHHHh
Confidence            444544 37899999997  59999998             899999999888 68999999999999999999999998


Q ss_pred             CC
Q psy14244        164 PE  165 (226)
Q Consensus       164 h~  165 (226)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=4.7e-13  Score=81.79  Aligned_cols=54  Identities=26%  Similarity=0.758  Sum_probs=50.0

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccc-cccC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHS-CMNS  136 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~-~~~~  136 (226)
                      +||.|+.|++.|.....|..|+++|++++||.|+.|++.|..             ...|..|+ +.|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR-------------RDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESS-------------HHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCC-------------HHHHHHHHHHHcC
Confidence            589999999999999999999999999999999999999998             89999996 4555

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=75.95  Aligned_cols=45  Identities=27%  Similarity=0.501  Sum_probs=43.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHh-HhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C  105 (226)
                      .|+++|++++||.|++|++.|.....|..|++ +|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            58899999999999999999999999999999 9999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.7e-12  Score=74.91  Aligned_cols=45  Identities=29%  Similarity=0.587  Sum_probs=42.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999875

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.29  E-value=5.6e-13  Score=82.22  Aligned_cols=50  Identities=20%  Similarity=0.493  Sum_probs=46.6

Q ss_pred             HhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         59 LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        59 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      |..|+++|++++||.|+.|++.|.....|.   ++|++++||.|+.|++.|..
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~   51 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEE
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCcccc
Confidence            568999999999999999999999988876   78999999999999999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=87.32  Aligned_cols=62  Identities=24%  Similarity=0.337  Sum_probs=57.4

Q ss_pred             CCcccccCccccCChhhHHHHHhH-hcCCCC--------ccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLI-HSGIRP--------FKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK  140 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~k~--------~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k  140 (226)
                      ..|.|+.|++.|.....|..|+++ |+++++        |.|+.|++.|..             ...|..|+++|+ +++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~-------------~~~L~~H~~~H~-~~k   89 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA-------------KYKLVNHIRVHT-GEK   89 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSS-------------HHHHHHHHHHHH-TCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCC-------------HHHHHHHHHhcC-CCC
Confidence            347899999999999999999998 999888        999999999998             999999999988 799


Q ss_pred             CccCC
Q psy14244        141 PYQCD  145 (226)
Q Consensus       141 ~~~C~  145 (226)
                      ||.|+
T Consensus        90 ~~~C~   94 (95)
T 2ej4_A           90 SGPSS   94 (95)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            99996

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.28  E-value=2.8e-12  Score=73.91  Aligned_cols=44  Identities=36%  Similarity=0.657  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.3e-12  Score=73.61  Aligned_cols=44  Identities=30%  Similarity=0.677  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.28  E-value=3.1e-12  Score=72.21  Aligned_cols=42  Identities=26%  Similarity=0.490  Sum_probs=40.3

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            688999999999999999999999999999999999999995

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.3e-12  Score=73.60  Aligned_cols=44  Identities=34%  Similarity=0.655  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.8e-12  Score=73.32  Aligned_cols=44  Identities=34%  Similarity=0.654  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +|+++|+++++|.|+.|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58999999999999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4e-12  Score=73.27  Aligned_cols=44  Identities=30%  Similarity=0.683  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|++++||.|+.|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.2e-12  Score=73.60  Aligned_cols=44  Identities=34%  Similarity=0.647  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.5e-12  Score=71.47  Aligned_cols=42  Identities=21%  Similarity=0.469  Sum_probs=40.2

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678999999999999999999999999999999999999985

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.4e-12  Score=73.52  Aligned_cols=44  Identities=32%  Similarity=0.650  Sum_probs=42.1

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            68999999999999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.3e-12  Score=73.61  Aligned_cols=44  Identities=30%  Similarity=0.566  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.5e-12  Score=73.48  Aligned_cols=44  Identities=34%  Similarity=0.669  Sum_probs=41.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.2e-12  Score=73.66  Aligned_cols=44  Identities=32%  Similarity=0.582  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.27  E-value=1.2e-12  Score=75.52  Aligned_cols=45  Identities=27%  Similarity=0.474  Sum_probs=41.8

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGT-GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSC-CCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCC-CCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777777 79999999999999999999999999999999999876

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.4e-12  Score=73.09  Aligned_cols=44  Identities=39%  Similarity=0.703  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.5e-12  Score=73.02  Aligned_cols=44  Identities=36%  Similarity=0.613  Sum_probs=41.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.1e-12  Score=72.80  Aligned_cols=44  Identities=34%  Similarity=0.647  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.8e-12  Score=73.31  Aligned_cols=44  Identities=34%  Similarity=0.671  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            58899999999999999999999999999999999999999974

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=3.7e-12  Score=76.12  Aligned_cols=48  Identities=29%  Similarity=0.604  Sum_probs=43.7

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHh-HhcCCCCccCCCCcccccc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C~~~f~~  111 (226)
                      ..|.+++||.|++|++.|.....|..|++ +|++++||.|++|++.|..
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            45788899999999999999999999997 8999999999999999964

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=75.03  Aligned_cols=45  Identities=22%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGT-GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCC-CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999886

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.6e-12  Score=73.49  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58999999999999999999999999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.1e-12  Score=72.40  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=41.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5889999999999999999999999999999999999999985

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=8.2e-13  Score=82.43  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=52.6

Q ss_pred             CCCccccCccccccCChhHHhhccCCCCCCCCcccc-cCccccCChhhHHHHHhHhcCCCC
Q psy14244         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD-TCEKSFTNSQNLNTHQLIHSGIRP   99 (226)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~k~   99 (226)
                      ..++|.|+.|++.|. .+.|..|+++ ++++||.|+ .|++.|.....|..|+++|.+.++
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            345789999999999 9999999988 999999999 999999999999999999987765

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.7e-12  Score=72.93  Aligned_cols=44  Identities=39%  Similarity=0.751  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.5e-12  Score=72.24  Aligned_cols=43  Identities=30%  Similarity=0.580  Sum_probs=41.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.9e-12  Score=72.52  Aligned_cols=44  Identities=30%  Similarity=0.613  Sum_probs=41.7

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            48899999999999999999999999999999999999999973

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.2e-12  Score=73.12  Aligned_cols=44  Identities=32%  Similarity=0.678  Sum_probs=42.0

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=74.66  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGT-GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCC-CCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccC-CCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.1e-12  Score=73.16  Aligned_cols=44  Identities=30%  Similarity=0.626  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|+.|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.6e-12  Score=72.99  Aligned_cols=44  Identities=34%  Similarity=0.602  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            58999999999999999999999999999999999999999973

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.7e-12  Score=72.20  Aligned_cols=43  Identities=23%  Similarity=0.445  Sum_probs=41.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      +|+++|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5889999999999999999999999999999999999999985

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.2e-12  Score=72.74  Aligned_cols=44  Identities=32%  Similarity=0.591  Sum_probs=41.9

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-12  Score=75.00  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGM-GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSC-CCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccC-CCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.6e-12  Score=72.99  Aligned_cols=44  Identities=36%  Similarity=0.681  Sum_probs=41.6

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      ++++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46789999999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.7e-12  Score=74.81  Aligned_cols=45  Identities=24%  Similarity=0.404  Sum_probs=41.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGT-GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTT-CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCC-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777 79999999999999999999999999999999999986

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=74.72  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGT-GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCC-CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCC-CCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999886

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.5e-12  Score=72.70  Aligned_cols=44  Identities=36%  Similarity=0.659  Sum_probs=41.5

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.9e-12  Score=72.83  Aligned_cols=44  Identities=34%  Similarity=0.695  Sum_probs=41.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=71.97  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=41.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5899999999999999999999999999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.5e-12  Score=73.04  Aligned_cols=44  Identities=27%  Similarity=0.542  Sum_probs=41.7

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      .+++|+++++|.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36789999999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.8e-12  Score=74.75  Aligned_cols=45  Identities=24%  Similarity=0.247  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGS-STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-CSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCC-CCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777 69999999999999999999999999999999999886

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=75.37  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=41.8

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGT-GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcC-CCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            5777777 79999999999999999999999999999999999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=74.35  Aligned_cols=45  Identities=24%  Similarity=0.407  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGT-GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCS-SCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCC-CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.1e-12  Score=71.62  Aligned_cols=42  Identities=29%  Similarity=0.605  Sum_probs=40.2

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            488999999999999999999999999999999999999988

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=7.1e-12  Score=71.84  Aligned_cols=43  Identities=19%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD  106 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~  106 (226)
                      ..|++++||.|++|++.|.....|..|+++|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4689999999999999999999999999999999999999996

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.8e-12  Score=74.70  Aligned_cols=45  Identities=22%  Similarity=0.428  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGT-GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999886

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.9e-12  Score=72.09  Aligned_cols=43  Identities=30%  Similarity=0.496  Sum_probs=41.1

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5899999999999999999999999999999999999999995

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.2e-12  Score=74.34  Aligned_cols=45  Identities=22%  Similarity=0.110  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGS-GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCC-CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCC-CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=74.91  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGT-GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSS-CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCC-CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.9e-12  Score=74.65  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGT-GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSS-SSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccC-CCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3677777 79999999999999999999999999999999999876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.4e-12  Score=79.58  Aligned_cols=56  Identities=23%  Similarity=0.435  Sum_probs=52.3

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC-CCcccccccCCCCCCCCCCCCCccccccccccC
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT-TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~-~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (226)
                      ..+++||.|+.|++.|. ...|..|+++ ++++||.|+ .|++.|..             ++.|..|+++|.
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~-------------~~~L~~H~~~hc   61 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVA-------------REDLPGHLKDSC   61 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEE-------------TTTHHHHHHTTS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCccccc-------------HHHHHHHHHhhc
Confidence            56789999999999999 9999999999 999999999 99999998             889999998776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3e-12  Score=73.78  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      |+++|. +++||.|++||+.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGT-GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCC-CCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcC-CCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            666777 79999999999999999999999999999999999876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.23  E-value=1.5e-12  Score=75.04  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGT-GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCT-TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCC-CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=74.87  Aligned_cols=45  Identities=24%  Similarity=0.471  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC-CCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCC-CCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 69999999999999999999999999999999999986

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.5e-12  Score=74.10  Aligned_cols=45  Identities=31%  Similarity=0.485  Sum_probs=41.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|+++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGT-GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSS-CCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCC-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777777 79999999999999999999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.3e-12  Score=73.62  Aligned_cols=45  Identities=24%  Similarity=0.399  Sum_probs=41.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGA-GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSS-CCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcC-CCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3666777 79999999999999999999999999999999999876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=74.88  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGT-GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCC-CCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=7.2e-12  Score=72.09  Aligned_cols=44  Identities=34%  Similarity=0.695  Sum_probs=41.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2e-12  Score=74.53  Aligned_cols=45  Identities=27%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGS-GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCC-CCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCC-CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.8e-12  Score=72.28  Aligned_cols=44  Identities=27%  Similarity=0.501  Sum_probs=41.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999973

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=74.84  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=41.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGT-GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCC-CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.22  E-value=1.3e-12  Score=75.31  Aligned_cols=45  Identities=27%  Similarity=0.452  Sum_probs=41.8

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGT-GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccC-CCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777777 79999999999999999999999999999999999876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.6e-12  Score=75.01  Aligned_cols=45  Identities=31%  Similarity=0.418  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGT-GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTS-SCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCC-CCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777777 79999999999999999999999999999999999876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=71.31  Aligned_cols=44  Identities=34%  Similarity=0.713  Sum_probs=41.3

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999973

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.7e-12  Score=72.56  Aligned_cols=43  Identities=23%  Similarity=0.405  Sum_probs=41.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5899999999999999999999999999999999999999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=8.3e-12  Score=70.40  Aligned_cols=41  Identities=29%  Similarity=0.583  Sum_probs=39.5

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            78899999999999999999999999999999999999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.21  E-value=2.7e-12  Score=73.92  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGT-GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCC-CCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCC-CCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.8e-12  Score=73.88  Aligned_cols=45  Identities=24%  Similarity=0.388  Sum_probs=41.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGT-GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSS-CCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCC-CCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3666777 79999999999999999999999999999999999876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=7.4e-12  Score=70.58  Aligned_cols=41  Identities=34%  Similarity=0.664  Sum_probs=39.7

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      |+++|++++||.|+.|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            78899999999999999999999999999999999999988

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.21  E-value=1e-11  Score=69.91  Aligned_cols=41  Identities=32%  Similarity=0.434  Sum_probs=39.6

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            78899999999999999999999999999999999999988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.1e-12  Score=73.75  Aligned_cols=45  Identities=27%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~h~~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGS-VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCC-CCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCC-CCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3666777 79999999999999999999999999999999999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.5e-12  Score=74.12  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGS-GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTC-CCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCC-CCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777 69999999999999999999999999999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.8e-12  Score=74.70  Aligned_cols=45  Identities=24%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGT-GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCC-CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCC-CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=73.75  Aligned_cols=45  Identities=22%  Similarity=0.425  Sum_probs=41.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGT-GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCC-CCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            3677777 79999999999999999999999999999999999876

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=9.1e-12  Score=71.72  Aligned_cols=44  Identities=30%  Similarity=0.572  Sum_probs=41.6

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcC-CCCccCCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG-IRPFKCTT  104 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~k~~~C~~  104 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++ ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999 99999973

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.8e-12  Score=74.68  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGT-GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCC-CCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777777 69999999999999999999999999999999999876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.20  E-value=2.9e-13  Score=83.51  Aligned_cols=58  Identities=14%  Similarity=0.407  Sum_probs=48.2

Q ss_pred             HHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccC
Q psy14244         87 LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ  161 (226)
Q Consensus        87 l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~  161 (226)
                      |..|+++|++++||.|+.|++.|..             .+.|.   +.|. +++||.|+.||+.|....++..+.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~-------------~~~l~---~~H~-~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTD-------------LEANQ---LFDP-MTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEH-------------HHHHH---HEET-TTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhcc-------------HHHhH---hhcC-CCCCEECCCCCCccccCccccccc
Confidence            4468889999999999999999987             66665   5666 789999999999999888777553

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=9.7e-12  Score=72.35  Aligned_cols=43  Identities=28%  Similarity=0.579  Sum_probs=38.8

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcc
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDK  107 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~  107 (226)
                      .|.++++|.|++|++.|.....|..|+++|++++||.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            5678889999999999999999999999999999999999985

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.6e-11  Score=70.01  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=40.7

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3788999999999999999999999999999999999999985

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.5e-12  Score=75.11  Aligned_cols=45  Identities=27%  Similarity=0.477  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGT-GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCC-CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 69999999999999999999999999999999999876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.20  E-value=2.7e-12  Score=76.71  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             ccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCcc
Q psy14244         50 HKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK  101 (226)
Q Consensus        50 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (226)
                      ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            5678888999999999999999999999999999999999999999999874

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.7e-12  Score=74.81  Aligned_cols=45  Identities=22%  Similarity=0.336  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGT-GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSS-CCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcC-CCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999886

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.7e-12  Score=72.84  Aligned_cols=45  Identities=24%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCC-CCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC-GPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|++ +|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGT-GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCC-CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccC-CCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3677777 7999999999999999999999999 9999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.6e-12  Score=74.98  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGS-GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCC-CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            4777777 69999999999999999999999999999999999986

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.6e-12  Score=74.94  Aligned_cols=45  Identities=22%  Similarity=0.407  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCC-CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.6e-12  Score=71.09  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=41.1

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5899999999999999999999999999999999999999984

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.3e-12  Score=75.41  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=41.8

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGS-GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCS-CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCC-CCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5777777 79999999999999999999999999999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.3e-12  Score=75.28  Aligned_cols=45  Identities=24%  Similarity=0.370  Sum_probs=41.8

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGT-GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSS-CCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccC-CCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.19  E-value=2.5e-12  Score=74.16  Aligned_cols=45  Identities=22%  Similarity=0.312  Sum_probs=41.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGT-GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-CCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCC-CCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3677777 79999999999999999999999999999999999876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.19  E-value=3.8e-12  Score=73.34  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=41.1

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|.++|. +++||.|++||+.|.....|..|+++|.+++||.|++|
T Consensus         2 ~h~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGA-GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSC-CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3566777 79999999999999999999999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.9e-12  Score=73.85  Aligned_cols=44  Identities=27%  Similarity=0.407  Sum_probs=40.4

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++|
T Consensus         1 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSS-GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCS-SCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcC-CCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556676 79999999999999999999999999999999999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.3e-12  Score=74.29  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=41.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGS-GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSC-CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccC-CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.5e-12  Score=75.02  Aligned_cols=45  Identities=31%  Similarity=0.453  Sum_probs=41.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGT-GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCS-CCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCC-CCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777 79999999999999999999999999999999999876

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.7e-12  Score=72.01  Aligned_cols=44  Identities=23%  Similarity=0.459  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-CCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCC-CCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8.4e-12  Score=71.85  Aligned_cols=44  Identities=23%  Similarity=0.430  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-CCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCC-CCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            4677777 7999999999999999999999999999999999975

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=78.01  Aligned_cols=59  Identities=27%  Similarity=0.653  Sum_probs=43.4

Q ss_pred             CCCCCCCCccccc--CccccCChhhHHHHHhHhcCCCCccCCC--CcccccccCCCCCCCCCCCCCcccccccccc
Q psy14244         64 CPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (226)
Q Consensus        64 ~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (226)
                      ......++|.|+.  |++.|.....|..|+++|++++||.|++  |++.|..             ...|..|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~-------------~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR-------------SDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESS-------------HHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCC-------------HHHHHhHhhcC
Confidence            3455667778877  8888888888888888888888888854  8888876             77777776543

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.4e-11  Score=69.24  Aligned_cols=43  Identities=26%  Similarity=0.492  Sum_probs=40.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            5899999999999999999999999999999999999999873

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8.1e-12  Score=71.92  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=40.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGT-GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSS-SSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4777777 6999999999999999999999999999999999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=71.49  Aligned_cols=44  Identities=27%  Similarity=0.464  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGT-GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-CSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccC-CCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1e-11  Score=71.50  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|++.|. +++||.|+.||+.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGT-GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCC-SCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCC-CCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4677777 6999999999999999999999999999999999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.1e-12  Score=71.93  Aligned_cols=44  Identities=23%  Similarity=0.382  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGT-GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-CCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcC-CCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=69.74  Aligned_cols=42  Identities=29%  Similarity=0.475  Sum_probs=38.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|
T Consensus         1 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSG-GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCC-SCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccC-CCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3667777 79999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.1e-12  Score=73.19  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=41.2

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGS-GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC-CCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCC-CCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3666777 79999999999999999999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.5e-12  Score=74.14  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=41.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         2 ~h~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGS-GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCC-SSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccC-CCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777 79999999999999999999999999999999999876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.16  E-value=5.3e-12  Score=79.98  Aligned_cols=57  Identities=30%  Similarity=0.627  Sum_probs=51.8

Q ss_pred             hcCCCccccCc--cccccCChhHHhhccCCCCCCCCccccc--CccccCChhhHHHHHhHh
Q psy14244         38 SANAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        38 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   94 (226)
                      .+.+++|.|..  |++.|.....|..|+++|+++++|.|++  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            35566888988  9999999999999999999999999975  999999999999999875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.6e-12  Score=71.62  Aligned_cols=44  Identities=30%  Similarity=0.427  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|+.|++.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGS-GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCC-CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCC-CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=71.32  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=40.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGM-GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCC-CCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4677777 7999999999999999999999999999999999975

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3.3e-12  Score=73.57  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=41.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGS-REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSS-CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccC-CCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4666777 79999999999999999999999999999999999876

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=71.49  Aligned_cols=44  Identities=27%  Similarity=0.463  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGT-GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-CCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCC-CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4777777 6999999999999999999999999999999999975

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.2e-12  Score=73.71  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=40.8

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      |+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         3 h~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGT-GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCS-SCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCC-CCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            666777 79999999999999999999999999999999999886

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=70.40  Aligned_cols=43  Identities=21%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGT-GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSS-SSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCC-CCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            4777777 799999999999999999999999999999999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=4.6e-11  Score=68.72  Aligned_cols=43  Identities=26%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      .+++|+++++|.|++|++.|.....|..|+++|++++||.|..
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.7e-12  Score=71.74  Aligned_cols=44  Identities=23%  Similarity=0.350  Sum_probs=40.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGT-GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCS-SCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCC-CCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.6e-11  Score=70.67  Aligned_cols=43  Identities=21%  Similarity=0.414  Sum_probs=39.4

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      |+++|. +++||.|++|++.|.....|..|+++|.+++||.|++
T Consensus         3 h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGT-GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCS-SCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCC-CCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            566676 6999999999999999999999999999999999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=9.4e-12  Score=71.60  Aligned_cols=44  Identities=23%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGT-GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCC-SCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCC-CCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            4777777 6999999999999999999999999999999999975

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.6e-11  Score=69.39  Aligned_cols=43  Identities=33%  Similarity=0.583  Sum_probs=40.1

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +.++|+++++|.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.1e-11  Score=69.97  Aligned_cols=44  Identities=25%  Similarity=0.554  Sum_probs=41.6

Q ss_pred             ccCCCCCCCCcccc--cCccccCChhhHHHHHhHhcCCCCccCCCC
Q psy14244         62 HNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (226)
Q Consensus        62 H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (226)
                      |.++|+++++|.|.  .|++.|.....|..|+++|++++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66789999999998  899999999999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=70.63  Aligned_cols=43  Identities=21%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGT-GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSS-SCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccC-CCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4777777 799999999999999999999999999999999984

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.8e-12  Score=71.72  Aligned_cols=44  Identities=27%  Similarity=0.484  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGT-GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCC-CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.13  E-value=1e-11  Score=69.96  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=38.3

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|+
T Consensus         1 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSS-GENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSS-SCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCC-CCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            455666 699999999999999999999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=6.1e-11  Score=67.18  Aligned_cols=41  Identities=15%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      ++|+++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            57899999999999999999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=71.32  Aligned_cols=44  Identities=20%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGT-GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCS-SCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccC-CCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.4e-11  Score=68.44  Aligned_cols=41  Identities=27%  Similarity=0.344  Sum_probs=37.7

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|
T Consensus         2 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSG-GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCS-SSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccC-CCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            556676 69999999999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=6.5e-12  Score=72.34  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=41.0

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      .|+++|. +++||.|+.|++.|...+.|..|+++|.+++||.|+++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGS-GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCC-CCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCC-CCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3666777 79999999999999999999999999999999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.9e-11  Score=70.29  Aligned_cols=44  Identities=27%  Similarity=0.482  Sum_probs=40.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGT-GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-CCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCC-CCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999974

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=2e-11  Score=80.59  Aligned_cols=60  Identities=17%  Similarity=0.382  Sum_probs=50.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH  137 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~  137 (226)
                      .+.++|++++||.|++|++.|.....|..|+++|++++||.|..|..                 ...|..|.+.+.+
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~-----------------~~~~~~~~~~~~~   74 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER-----------------RKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC-----------------CCCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh-----------------HHHHHhhhccccc
Confidence            34567999999999999999999999999999999999999987653                 4556667666663

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=7.4e-12  Score=72.04  Aligned_cols=44  Identities=27%  Similarity=0.478  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGT-GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSC-CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCC-CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.11  E-value=7.3e-12  Score=72.13  Aligned_cols=44  Identities=23%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGT-GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-CCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCC-CCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4677777 6999999999999999999999999999999999975

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.7e-11  Score=69.77  Aligned_cols=43  Identities=23%  Similarity=0.365  Sum_probs=39.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGH-TRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCC-CCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccC-CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            4777777 799999999999999999999999999999999984

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.2e-12  Score=72.78  Aligned_cols=44  Identities=25%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      |+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++|
T Consensus         3 h~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGS-GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCC-SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCC-CCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            566677 69999999999999999999999999999999999876

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2e-11  Score=70.26  Aligned_cols=44  Identities=16%  Similarity=0.279  Sum_probs=39.9

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCC-CCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPED-IKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~-~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+ ++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQ-KEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCC-CSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccC-CCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3666777 69999999999999999999999999999 99999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=8.3e-12  Score=71.87  Aligned_cols=44  Identities=27%  Similarity=0.451  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGT-GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-SCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCC-CCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 6999999999999999999999999999999999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.3e-11  Score=69.49  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=38.2

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|.
T Consensus         1 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSS-GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSC-SCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcC-CCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666 799999999999999999999999999999999984

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.2e-11  Score=70.41  Aligned_cols=43  Identities=23%  Similarity=0.448  Sum_probs=39.5

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGT-GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCS-CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCC-CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            4777777 799999999999999999999999999999999985

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.4e-11  Score=69.87  Aligned_cols=42  Identities=29%  Similarity=0.374  Sum_probs=38.7

Q ss_pred             cccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       133 ~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      ++|. +++||.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~h~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGT-GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSST-TCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCC-CCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3555 68999999999999999999999999999999999876

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=9.3e-12  Score=71.69  Aligned_cols=44  Identities=23%  Similarity=0.449  Sum_probs=40.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGT-GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCC-CSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccC-CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3677777 7999999999999999999999999999999999975

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.5e-11  Score=70.08  Aligned_cols=43  Identities=16%  Similarity=0.403  Sum_probs=39.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      +|+++|. +++||.|+.||+.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGA-GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCS-CCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccC-CCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            4677777 799999999999999999999999999999999984

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.3e-11  Score=69.32  Aligned_cols=43  Identities=28%  Similarity=0.454  Sum_probs=39.1

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      |+++|. +++||.|++|++.|.....|..|+++|.+++||.|+.
T Consensus         3 h~~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGT-GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC-CSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcC-CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            555666 6999999999999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.2e-11  Score=71.14  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=40.3

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.|++.|...+.|..|+++|.+++||.|++
T Consensus         2 ~h~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGA-GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCC-SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCC-CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4666777 6999999999999999999999999999999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.9e-11  Score=65.89  Aligned_cols=39  Identities=33%  Similarity=0.605  Sum_probs=36.9

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      ++|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            578999999999999999999999999999999999987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.1e-11  Score=71.36  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|++||+.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGT-GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCS-SCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCC-CCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777 7999999999999999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.07  E-value=8.7e-12  Score=74.47  Aligned_cols=46  Identities=20%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             CccccccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCc
Q psy14244        125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNV  171 (226)
Q Consensus       125 ~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  171 (226)
                      ...|..|++.|. +++||.|+.||+.|...+.|..|+++|++++||.
T Consensus         9 ~~~l~~h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            9 PPGTEKPRSRSQ-SEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             SSCCCCCHHHHT-SSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             CcchhhHHHhcC-CCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            788999999988 7999999999999999999999999999999874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.1e-11  Score=77.25  Aligned_cols=65  Identities=20%  Similarity=0.368  Sum_probs=58.7

Q ss_pred             hhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCcccccccccc
Q psy14244         56 QSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (226)
Q Consensus        56 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (226)
                      ...|..|+.+|.+++|+.|+.|++.|. ...|..|+ .|.+++|+.|+.|++.|.              ...|..|..++
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~--------------~~~l~~H~~~c   65 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL--------------VKDLKTHPEVC   65 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE--------------TTGGGTHHHHB
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc--------------HHHHHHHHHHc
Confidence            356889999999999999999999994 89999999 899999999999999886              67889998777


Q ss_pred             C
Q psy14244        136 S  136 (226)
Q Consensus       136 ~  136 (226)
                      .
T Consensus        66 ~   66 (75)
T 2d9k_A           66 G   66 (75)
T ss_dssp             T
T ss_pred             c
Confidence            6

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.3e-11  Score=71.06  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +|+++|. +++||.|++|++.|...+.|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGT-GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCC-SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccC-CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            5777777 6999999999999999999999999999999999973

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=69.93  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=39.4

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      |+++|. +++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         3 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGS-GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCC-CSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcC-CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            666777 7999999999999999999999999999999999963

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.1e-11  Score=71.34  Aligned_cols=44  Identities=25%  Similarity=0.374  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|++.|. +++||.|+.||+.|...+.|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGT-GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSS-CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcC-CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4677777 7999999999999999999999999999999999975

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=5.3e-11  Score=71.02  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=40.5

Q ss_pred             cCCCccccCccccccCChhHHhhccC-CCCCCCCcccccCccccCC
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNC-PQMKPRPYKCDTCEKSFTN   83 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~   83 (226)
                      +..++|.|++|++.|.....|..|++ +|++++||.|++|++.|.+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            44567888999999999999999997 9999999999999999975

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.3e-11  Score=69.28  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=39.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|++||+.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGT-DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCC-CCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCC-CCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4677777 799999999999999999999999999999999984

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.04  E-value=3e-11  Score=67.97  Aligned_cols=41  Identities=27%  Similarity=0.428  Sum_probs=37.5

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|
T Consensus         2 H~~~H~-~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSG-GETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCC-SSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCC-CCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            555666 69999999999999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.5e-11  Score=70.79  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|+++|. +++||.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGS-GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSS-CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCC-CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4677777 7999999999999999999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5e-11  Score=67.87  Aligned_cols=43  Identities=23%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|++|++.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGS-GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCC-CCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccC-CCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            4777777 799999999999999999999999999999999873

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-11  Score=68.60  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=37.8

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|
T Consensus         2 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSG-GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCC-SSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccC-CCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            566677 79999999999999999999999999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.5e-11  Score=69.81  Aligned_cols=42  Identities=26%  Similarity=0.408  Sum_probs=38.6

Q ss_pred             cccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       133 ~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      ++|. +++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGE-GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCS-CCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCC-CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3455 79999999999999999999999999999999999876

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7.9e-11  Score=67.34  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=37.3

Q ss_pred             cccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       133 ~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      ++|. +++||.|++|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGT-GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCC-SCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCC-CCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            3555 6899999999999999999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.8e-11  Score=70.39  Aligned_cols=43  Identities=23%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      .|+++|. +++||.|++|++.|...+.|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGT-GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSC-CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccC-CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777777 799999999999999999999999999999999996

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4.7e-11  Score=67.98  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.+++||.|+
T Consensus         3 h~~~h~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGA-AKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCS-SSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCC-CCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            556666 689999999999999999999999999999999984

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=1.8e-10  Score=66.87  Aligned_cols=41  Identities=22%  Similarity=0.420  Sum_probs=37.5

Q ss_pred             cCCCccccCccccccCChhHHhhccCCCCCCCCcccccCcc
Q psy14244         39 ANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEK   79 (226)
Q Consensus        39 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   79 (226)
                      ...++|.|++|++.|.....|..|+++|++++||.|++|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            44567899999999999999999999999999999999985

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.6e-10  Score=66.93  Aligned_cols=44  Identities=20%  Similarity=0.362  Sum_probs=39.5

Q ss_pred             cccccCCCCCCccCC--cchhhhcChhhhhccCCCCCCCCCCcccch
Q psy14244        131 HSCMNSHFPKPYQCD--RCSQFFGDRMNLISHQCGPEDIKPNVDNLQ  175 (226)
Q Consensus       131 H~~~~~~~~k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~  175 (226)
                      |.++|. +++||.|.  .|++.|.....|..|+++|.+++||.|.+|
T Consensus         3 ~~~~H~-~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGT-GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSC-CCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcC-CCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344566 69999998  899999999999999999999999999876

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=7.5e-11  Score=67.81  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             cccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       133 ~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +.|. +++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         5 ~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGH-GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCC-CCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            3555 6899999999999999999999999999999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.6e-10  Score=64.55  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=35.2

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      +|. +++||.|+.||+.|.....|..|+++|++++||.|
T Consensus         4 ~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSS-GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCC-CCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccC-CCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            344 68999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=6.4e-11  Score=67.73  Aligned_cols=42  Identities=19%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccchh
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQT  176 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~~~  176 (226)
                      .|. +++||.|+.|++.|...+.|..|+++|++++||.|++|+
T Consensus         4 ~h~-~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSS-GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCS-SCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcC-CCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            344 689999999999999999999999999999999999884

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.7e-12  Score=81.58  Aligned_cols=68  Identities=16%  Similarity=0.191  Sum_probs=59.6

Q ss_pred             hhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCC
Q psy14244         85 QNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus        85 ~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h  164 (226)
                      ..|..|++++.+++|+.|+.|++.|.              ...|..|. .+. +++||.|+.|++.|. ...|..|+.+|
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~--------------~~~L~~H~-~~c-~~~~~~C~~C~~~~~-~~~l~~H~~~c   65 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS--------------ILKLKEHE-DYC-GARTELCGNCGRNVL-VKDLKTHPEVC   65 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC--------------HHHHHHHH-HHH-HHCEEECSSSCCEEE-TTGGGTHHHHB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh--------------HHHHHHHH-hHc-CCCceEcccCCCcCc-HHHHHHHHHHc
Confidence            35677988999999999999999995              78999998 676 699999999999988 59999999998


Q ss_pred             CCCCC
Q psy14244        165 EDIKP  169 (226)
Q Consensus       165 ~~~~~  169 (226)
                      .+++.
T Consensus        66 ~~~~~   70 (75)
T 2d9k_A           66 GREGS   70 (75)
T ss_dssp             TTBSS
T ss_pred             cCCcC
Confidence            87643

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1e-10  Score=66.26  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      .|. +++||.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         4 ~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSS-GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCS-SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcC-CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            455 6899999999999999999999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.90  E-value=8.9e-10  Score=60.77  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=33.6

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCC
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (226)
                      |++++||.|++|++.|.....|..|+++|++++||.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            56789999999999999999999999999999998763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.3e-09  Score=59.30  Aligned_cols=37  Identities=24%  Similarity=0.463  Sum_probs=34.4

Q ss_pred             cCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCC
Q psy14244         63 NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (226)
Q Consensus        63 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (226)
                      +++|++++||.|+.|++.|.....|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4679999999999999999999999999999999875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.86  E-value=2.3e-09  Score=58.22  Aligned_cols=37  Identities=24%  Similarity=0.554  Sum_probs=34.4

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      .|+++|++++||.|+.|++.|.....|..|+++|+++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            3788999999999999999999999999999999874

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=5.1e-09  Score=64.64  Aligned_cols=40  Identities=33%  Similarity=0.453  Sum_probs=35.9

Q ss_pred             CCCCCCCccccc--CccccCChhhHHHHH-hHhcCCCCccCCC
Q psy14244         65 PQMKPRPYKCDT--CEKSFTNSQNLNTHQ-LIHSGIRPFKCTT  104 (226)
Q Consensus        65 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~k~~~C~~  104 (226)
                      ..++++||.|+.  |+++|.....|..|+ ++|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            468899999975  999999999999997 6899999999976

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.80  E-value=9.3e-10  Score=60.69  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCCCCcc
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVD  172 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c  172 (226)
                      +++||.|+.||+.|...+.|..|+++|.+++||.+
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            68999999999999999999999999999999875

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.78  E-value=5.1e-09  Score=55.95  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=32.2

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (226)
                      +|+++++|.|+.|++.|.....|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47889999999999999999999999999998875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=1.7e-10  Score=76.05  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             HhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244         91 QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus        91 ~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      .++|++++||.|+.|++.|..             .+.|..|+++|+ +++||.|..|.    ....|..|.++|.+..
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~-------------~~~L~~H~~~Ht-~ekp~~C~~~~----~~~~~~~~~~~~~~~~   76 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQS-------------TAELTSHLNIHN-EEFQKRAKRQE----RRKQLLSKQKYADGAF   76 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESS-------------HHHHHHHHHHHH-HHHHHHCCCCS----CCCCCCCCCCCCCCSS
T ss_pred             ccccCCCCCCcCCCCCCEeCC-------------HHHHHHHHHHhC-CCCCcccchhh----hHHHHHhhhccccccc
Confidence            456899999999999999998             899999999888 68999998765    5677888999988843

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.77  E-value=5.5e-09  Score=55.89  Aligned_cols=35  Identities=26%  Similarity=0.515  Sum_probs=32.1

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (226)
                      +|++++||.|+.|++.|.....|..|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47889999999999999999999999999998875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.76  E-value=2e-09  Score=56.65  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                      +||.|+.||+.|...+.|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999999999986

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.73  E-value=2.3e-09  Score=58.22  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=32.3

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |+++|. +++||.|+.||+.|...+.|..|+++|.++
T Consensus         2 H~~~h~-~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGST-GIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTC-CSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCC-CCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            566777 799999999999999999999999999874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.72  E-value=1e-08  Score=54.24  Aligned_cols=32  Identities=25%  Similarity=0.527  Sum_probs=28.7

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCCCcc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK  101 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (226)
                      +||.|+.|++.|.....|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47899999999999999999999999999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=2.1e-09  Score=66.34  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             CCCCccCCc--chhhhcChhhhhccC-CCCCCCCCCcccchh
Q psy14244        138 FPKPYQCDR--CSQFFGDRMNLISHQ-CGPEDIKPNVDNLQT  176 (226)
Q Consensus       138 ~~k~~~C~~--C~~~f~~~~~L~~H~-~~h~~~~~~~c~~~~  176 (226)
                      ++|||+|+.  ||+.|...++|..|+ ++|++++|+.|....
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~   65 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVE   65 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCC
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccccc
Confidence            799999975  999999999999998 689999999987543

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.5e-09  Score=59.01  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      .|. +++||.|+.||+.|...+.|..|+++|++++|
T Consensus         3 ~h~-~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGS-SGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCC-CCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCC-CCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            455 68999999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.68  E-value=1.7e-09  Score=57.36  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCCCCc
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIKPNV  171 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  171 (226)
                      +||.|+.||+.|...+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999985

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.67  E-value=3.8e-09  Score=56.55  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      +++||.|+.||+.|...+.|..|+++|++++|
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            68999999999999999999999999998875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=54.66  Aligned_cols=35  Identities=26%  Similarity=0.560  Sum_probs=32.3

Q ss_pred             CCCCCCCCcccccCccccCCh-hhHHHHHhHhcCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNS-QNLNTHQLIHSGIR   98 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~k   98 (226)
                      ++|++++||.|+.|++.|... ..|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            578999999999999999999 99999999998864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=3.1e-09  Score=56.82  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      +++||.|+.||+.|...+.|..|+++|++++|
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999998875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.1e-08  Score=54.90  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             CCCCCCCccccc--CccccCChhhHHHHHhHhcCCC
Q psy14244         65 PQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        65 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+++++||.|+.  |++.|.....|..|+++|+++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478899999986  9999999999999999999863

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.4e-08  Score=53.62  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=32.0

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+|++++||.|+.|++.|.....|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            36889999999999999999999999999998864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.4e-08  Score=53.70  Aligned_cols=35  Identities=29%  Similarity=0.522  Sum_probs=31.8

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+|++++||.|++|++.|.....|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            46889999999999999999999999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=2.1e-08  Score=54.64  Aligned_cols=36  Identities=28%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CCCCCCcccc--cCccccCChhhHHHHHhHhcCCCCcc
Q psy14244         66 QMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFK  101 (226)
Q Consensus        66 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (226)
                      |++++||.|+  .|++.|.....|..|+++|++++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5788999999  59999999999999999999999873

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.2e-08  Score=53.83  Aligned_cols=35  Identities=26%  Similarity=0.534  Sum_probs=31.0

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      ..|++++||.|+.|++.|.....|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            36788999999999999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.8e-08  Score=54.67  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.9

Q ss_pred             cCCCCCCCCcccccCccccCChhhHHHH-HhHhcCC
Q psy14244         63 NCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHSGI   97 (226)
Q Consensus        63 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~   97 (226)
                      +++|++++||.|+.|++.|.....|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4678999999999999999999999999 8899875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=4.3e-08  Score=52.56  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=31.5

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +|+++++|.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999998874

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2e-08  Score=54.04  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +++||.|+.|++.|...+.|..|+++|++++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            6899999999999999999999999998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=6.1e-08  Score=52.04  Aligned_cols=34  Identities=24%  Similarity=0.533  Sum_probs=30.8

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .|.+++||.|+.|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4778899999999999999999999999998864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.48  E-value=3.3e-08  Score=56.81  Aligned_cols=40  Identities=23%  Similarity=0.467  Sum_probs=35.1

Q ss_pred             HhhccCCCCCCCCcccc--cCccccCChhhHHHHHhHhcCCC
Q psy14244         59 LLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        59 l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +..|...|++++||.|+  .|++.|.....|..|+++|++++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            44556779999999996  79999999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.48  E-value=6.2e-08  Score=55.90  Aligned_cols=35  Identities=29%  Similarity=0.581  Sum_probs=29.4

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHh-HhcCCCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRP   99 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~   99 (226)
                      +|++++||.|.+|++.|.....|..|++ +|+++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4789999999999999999999999999 8988754

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.46  E-value=1.1e-07  Score=51.42  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             CCCCCCCccccc--CccccCChhhHHHHHhHhcCCC
Q psy14244         65 PQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        65 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .|++++||.|++  |++.|.....|..|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478899999995  9999999999999999999874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.7e-08  Score=55.31  Aligned_cols=30  Identities=17%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             CCCCccCCc--chhhhcChhhhhccCCCCCCC
Q psy14244        138 FPKPYQCDR--CSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       138 ~~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      +++||.|+.  |++.|..++.|..|+++|+++
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            799999986  999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=2.5e-08  Score=53.61  Aligned_cols=31  Identities=26%  Similarity=0.406  Sum_probs=28.9

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +++||.|+.|++.|...+.|..|+++|++++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            6899999999999999999999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.44  E-value=9.1e-08  Score=51.64  Aligned_cols=32  Identities=28%  Similarity=0.752  Sum_probs=26.9

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      +.+++||.|+.|+++|.....|..|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            56789999999999999999999998       677654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=2.3e-08  Score=53.72  Aligned_cols=31  Identities=32%  Similarity=0.411  Sum_probs=28.8

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +++||.|+.|++.|.....|..|+++|.+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            6899999999999999999999999998764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.42  E-value=3.6e-08  Score=56.95  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=28.1

Q ss_pred             CCCCccCCcchhhhcChhhhhccCC-CCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQC-GPEDIKPN  170 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~  170 (226)
                      +++||.|.+||+.|.....|..|++ +|.++.+-
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            6899999999999999999999999 99987654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.78  E-value=3e-08  Score=50.43  Aligned_cols=29  Identities=34%  Similarity=0.535  Sum_probs=26.6

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999998763

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=2.4e-08  Score=54.18  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=29.4

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhcc-CCCCCCC
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISH-QCGPEDI  167 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H-~~~h~~~  167 (226)
                      +|. +++||.|+.||+.|..++.|..| +++|+++
T Consensus         3 ~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGS-SGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSS-SSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccC-CCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            455 68999999999999999999999 8888765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.41  E-value=2e-08  Score=54.27  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      +++||.|+.||++|..+++|..|+       ||.|+.
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            699999999999999999999998       677653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.77  E-value=3.4e-08  Score=50.54  Aligned_cols=30  Identities=33%  Similarity=0.448  Sum_probs=27.3

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      ++||.|+.||+.|...+.|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            478999999999999999999999998753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=4.2e-08  Score=50.06  Aligned_cols=30  Identities=37%  Similarity=0.633  Sum_probs=27.6

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      ++||.|+.||+.|.....|..|+++|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            479999999999999999999999998864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.9e-08  Score=54.44  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             ccCCCCCCccCCcchhhhcCh-hhhhccCCCCCCCC
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDR-MNLISHQCGPEDIK  168 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~-~~L~~H~~~h~~~~  168 (226)
                      +|. +++||.|+.|++.|... +.|..|+++|++++
T Consensus         3 ~h~-~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGS-SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCC-CCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCC-CCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            345 68999999999999999 99999999988753

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=3.8e-08  Score=52.80  Aligned_cols=31  Identities=26%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +++||.|+.|++.|.....|..|+++|++++
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            6899999999999999999999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=2.2e-08  Score=54.57  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CCCCccCC--cchhhhcChhhhhccCCCCCCCCCC
Q psy14244        138 FPKPYQCD--RCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       138 ~~k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                      +++||.|+  .||+.|...+.|..|+++|.+++||
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            68999999  5999999999999999999999887

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.37  E-value=5.8e-08  Score=50.78  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCc
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPY   72 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   72 (226)
                      +|.|+.||+.|...+.|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            456666666666666666666666666654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.37  E-value=4.2e-08  Score=49.78  Aligned_cols=29  Identities=24%  Similarity=0.347  Sum_probs=26.7

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+.||+.|...+.|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998763

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.36  E-value=7e-08  Score=48.55  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=25.9

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      ++||.|+.||+.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4799999999999999999999999874

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.35  E-value=2.9e-08  Score=57.05  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=33.7

Q ss_pred             cccccccccCCCCCCccCC--cchhhhcChhhhhccCCCCCCCC
Q psy14244        127 NLAQHSCMNSHFPKPYQCD--RCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       127 ~l~~H~~~~~~~~k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      .+..|...|. +++||.|+  .||+.|...+.|..|+++|++++
T Consensus         5 ~~~~~~~~H~-~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            5 GSIDKYVKEM-PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEE-TTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHHhccC-CCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3444555566 79999996  79999999999999999998864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.33  E-value=6.9e-08  Score=48.31  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=24.9

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      ++||.|+.||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.33  E-value=1.2e-07  Score=48.94  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=26.7

Q ss_pred             CCccCC--cchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCD--RCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+  .||+.|...+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999999864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=3e-07  Score=46.69  Aligned_cols=30  Identities=30%  Similarity=0.666  Sum_probs=23.9

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      ++||.|+.|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            367888888888888888888888887753

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.32  E-value=4.4e-07  Score=45.72  Aligned_cols=29  Identities=24%  Similarity=0.709  Sum_probs=24.9

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47889999999999999999999988764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.32  E-value=3e-07  Score=46.41  Aligned_cols=29  Identities=31%  Similarity=0.682  Sum_probs=23.1

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            46788888888888888888888887753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=5.3e-08  Score=52.28  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +++||.|+.|++.|.....|..|+++|.+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            6899999999999999999999999998764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.30  E-value=7.3e-07  Score=55.02  Aligned_cols=43  Identities=21%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcc
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDK  107 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~  107 (226)
                      ..+.+++||.|..|++.|.....|..|+++|+++. ..+.+++.
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~~   48 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYIDL   48 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCCC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-cccccccC
Confidence            35788999999999999999999999999999865 45555543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.30  E-value=1.2e-07  Score=49.31  Aligned_cols=30  Identities=30%  Similarity=0.692  Sum_probs=27.5

Q ss_pred             CCCccCC--cchhhhcChhhhhccCCCCCCCC
Q psy14244        139 PKPYQCD--RCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       139 ~k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      ++||.|+  .||+.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4799999  89999999999999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=9e-08  Score=47.30  Aligned_cols=26  Identities=35%  Similarity=0.719  Sum_probs=24.0

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      +||.|+.||+.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999998874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=2.4e-07  Score=47.22  Aligned_cols=29  Identities=34%  Similarity=0.460  Sum_probs=26.5

Q ss_pred             CCccCCcchhhhcChhhhhcc-CCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISH-QCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H-~~~h~~~~  168 (226)
                      +||.|+.||+.|...+.|..| +++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 89998864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.28  E-value=6.2e-08  Score=49.41  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=27.5

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      +||.|+.||+.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999988764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.28  E-value=6.3e-08  Score=49.04  Aligned_cols=29  Identities=21%  Similarity=0.515  Sum_probs=26.5

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.28  E-value=6.2e-07  Score=45.45  Aligned_cols=30  Identities=30%  Similarity=0.530  Sum_probs=25.6

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (226)
                      ++|.|+.|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478899999999999999999999887753

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=1.4e-07  Score=46.88  Aligned_cols=27  Identities=26%  Similarity=0.543  Sum_probs=24.0

Q ss_pred             CccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      ||.|+.||+.|...+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=5.5e-07  Score=45.27  Aligned_cols=29  Identities=34%  Similarity=0.607  Sum_probs=25.3

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47899999999999999999999988764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=4.5e-07  Score=45.64  Aligned_cols=29  Identities=52%  Similarity=0.868  Sum_probs=25.4

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|+.|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999998764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.25  E-value=7.8e-07  Score=46.07  Aligned_cols=30  Identities=37%  Similarity=0.800  Sum_probs=24.7

Q ss_pred             CCCcccc--cCccccCChhhHHHHHhHhcCCC
Q psy14244         69 PRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        69 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      ++||.|+  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3678888  78888888888888888888764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.23  E-value=7.5e-07  Score=45.83  Aligned_cols=29  Identities=41%  Similarity=0.878  Sum_probs=20.8

Q ss_pred             CCcccc--cCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|+  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            367776  77777777777777777777653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.23  E-value=9.3e-08  Score=47.72  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=24.5

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      ++||.|+.||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999998764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.21  E-value=8.9e-08  Score=51.84  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             CCCCccCCc--chhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDR--CSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +++||.|++  ||+.|...+.|..|+++|++++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            689999995  9999999999999999998764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=6.5e-07  Score=44.80  Aligned_cols=27  Identities=41%  Similarity=0.973  Sum_probs=19.8

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      +||.|+.|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            567777777777777777777777653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=8.1e-08  Score=48.53  Aligned_cols=29  Identities=24%  Similarity=0.246  Sum_probs=26.3

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+.||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999887763

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=8e-07  Score=44.10  Aligned_cols=27  Identities=19%  Similarity=0.565  Sum_probs=22.4

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhc
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      ++||.|+.|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            367888888888888888888888774

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.49  E-value=2.1e-07  Score=47.14  Aligned_cols=27  Identities=37%  Similarity=0.711  Sum_probs=17.1

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCC
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      ||.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            566666666666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.17  E-value=1e-06  Score=43.60  Aligned_cols=26  Identities=42%  Similarity=0.911  Sum_probs=17.0

Q ss_pred             CcccccCccccCChhhHHHHHhHhcC
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      ||.|+.|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46666777777776667777666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.17  E-value=7.8e-08  Score=48.64  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=26.4

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+.||+.|.....|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999988763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=2.4e-07  Score=47.15  Aligned_cols=28  Identities=36%  Similarity=0.845  Sum_probs=18.5

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +||.|+.|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4566666666666666666666666654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.15  E-value=7.1e-07  Score=44.41  Aligned_cols=25  Identities=24%  Similarity=0.615  Sum_probs=18.2

Q ss_pred             CCcccccCccccCChhhHHHHHhHh
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5677777777777777777777665

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.10  E-value=1.6e-06  Score=44.01  Aligned_cols=27  Identities=44%  Similarity=0.806  Sum_probs=17.0

Q ss_pred             CcccccCccccCChhhHHHH-HhHhcCC
Q psy14244         71 PYKCDTCEKSFTNSQNLNTH-QLIHSGI   97 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~   97 (226)
                      ||.|+.|++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            56666666666666666666 4556554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=3.7e-07  Score=56.37  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      +++||.|..|++.|...+.|..|+++|++...
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            68999999999999999999999999998754

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.24  E-value=8.8e-07  Score=43.52  Aligned_cols=24  Identities=42%  Similarity=0.862  Sum_probs=14.8

Q ss_pred             CcccccCccccCChhhHHHHHhHh
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      ||.|+.||+.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            556666666666666666666554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.87  E-value=1.3e-06  Score=43.91  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=24.7

Q ss_pred             CCccCC--cchhhhcChhhhhccCCCCCC
Q psy14244        140 KPYQCD--RCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       140 k~~~C~--~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      +||.|+  .||+.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            579999  999999999999999998864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.81  E-value=9.4e-06  Score=40.54  Aligned_cols=27  Identities=41%  Similarity=0.907  Sum_probs=20.6

Q ss_pred             CCcccc--cCccccCChhhHHHHHhHhcC
Q psy14244         70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        70 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            367787  888888888888888877753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.38  E-value=6.9e-05  Score=45.74  Aligned_cols=45  Identities=16%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             cccccCChhHHhhcc-CCCCCCC------Ccccc--cCccccCChhhHHHHHhH
Q psy14244         49 CHKVFDQQSSLLSHN-CPQMKPR------PYKCD--TCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        49 C~~~f~~~~~l~~H~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~   93 (226)
                      |++.|.+...|..|+ ..|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            444555554454443 2343332      34443  344444444444444443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00017  Score=43.94  Aligned_cols=40  Identities=30%  Similarity=0.546  Sum_probs=31.7

Q ss_pred             cccc--cCccccCChhhHHHHHh-HhcCCC------CccCC--CCcccccc
Q psy14244         72 YKCD--TCEKSFTNSQNLNTHQL-IHSGIR------PFKCT--TCDKSFVN  111 (226)
Q Consensus        72 ~~C~--~C~~~f~~~~~l~~H~~-~h~~~k------~~~C~--~C~~~f~~  111 (226)
                      |.|.  .|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+..
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~   52 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDD   52 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESS
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCC
Confidence            3454  49999999999999984 687765      79997  69887654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.07  E-value=3.9e-05  Score=56.46  Aligned_cols=108  Identities=17%  Similarity=0.315  Sum_probs=60.6

Q ss_pred             ccCccccccCChhHHhhc-cCCCCCCCCccc--ccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCC
Q psy14244         45 KCEYCHKVFDQQSSLLSH-NCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTP  121 (226)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~  121 (226)
                      .|+.|...+.....+... +..........|  ..|+..+. ...|..|+. .-.-++..|+.|+..+.           
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~~-----------  121 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPFQ-----------  121 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEEE-----------
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHHH-----------
Confidence            677777666543111000 000001123455  34665543 445667763 33455677888888775           


Q ss_pred             CCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCC
Q psy14244        122 TYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPN  170 (226)
Q Consensus       122 ~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  170 (226)
                         ...|..|....- ..++..|+.|+..+.. ..|..|..++.|..++
T Consensus       122 ---r~~l~~H~~~~C-~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          122 ---KFHINIHILKDC-PRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             ---GGGHHHHHHHTC-TTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             ---HHHHHHHhhhhC-CCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence               567888875444 4566778888887754 5778888887776654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.73  E-value=0.00061  Score=49.97  Aligned_cols=76  Identities=22%  Similarity=0.423  Sum_probs=60.0

Q ss_pred             ccc--CccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCC
Q psy14244         44 HKC--EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTP  121 (226)
Q Consensus        44 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~  121 (226)
                      ..|  .-|+..+. ...|..|.. .-...+..|+.|+..+ ....|..|+...-+.++..|+.|+..+.           
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-----------  148 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-----------  148 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-----------
T ss_pred             cCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-----------
Confidence            357  45776554 466788873 4556788999999888 6677999998888899999999999997           


Q ss_pred             CCCCccccccccccC
Q psy14244        122 TYTKSNLAQHSCMNS  136 (226)
Q Consensus       122 ~~~~~~l~~H~~~~~  136 (226)
                         ...|..|...+.
T Consensus       149 ---~~~l~~H~~~~~  160 (170)
T 3hcs_A          149 ---FEDKEIHDQNCP  160 (170)
T ss_dssp             ---GGGHHHHHTTCC
T ss_pred             ---HHHHHhHHHhCc
Confidence               678889987776

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.66  E-value=0.00032  Score=48.96  Aligned_cols=82  Identities=16%  Similarity=0.207  Sum_probs=47.3

Q ss_pred             CCcccccCccccCChhhHHHHH--hHhcCC-CCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQ--LIHSGI-RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR  146 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~  146 (226)
                      +++.|.+|+..|.+...+..|.  +.|... +.|.+. ++......      ..    +.....+..... ....|-|.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~-~~~~~~~~------~~----~~~~~~~~~~~~-~~~~~~C~~   98 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI-NQGEDSVP------AK----KFKAAPAEISDG-EDRSKCCPV   98 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH-TTCCCCCS------CC----CCSCCSSCCSSC-CCTTTEETT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc-cCcccCCC------CC----ccCCCccccccC-CCCCeEcCC
Confidence            5688889988888888888887  445422 333331 11111000      00    000001111222 467788999


Q ss_pred             chhhhcChhhhhccCCC
Q psy14244        147 CSQFFGDRMNLISHQCG  163 (226)
Q Consensus       147 C~~~f~~~~~L~~H~~~  163 (226)
                      |+.+|.+...|..|..+
T Consensus        99 C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEECSSHHHHHHHHTS
T ss_pred             CCCEeCCHHHHHHHHCC
Confidence            99999999999988754

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.45  E-value=0.00064  Score=46.82  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHh
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      +-..|+|+++|.|..|++.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            345688999999999999999999999998863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.32  E-value=0.00064  Score=46.84  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=25.8

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhccCCC
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      -++ |++||.|..|++.|.+.+.|..|+++
T Consensus        44 d~t-GekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLP-GGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSG-GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCC-CCcceEcccCcchhCCHHHHHHHHhh
Confidence            344 78999999999999999999999865

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.18  E-value=0.0039  Score=43.40  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhH
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      +.+...|.|.+|+..|.+...|..|...
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHTS
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHCC
Confidence            3445667788888888888888877653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.19  E-value=0.0023  Score=35.58  Aligned_cols=30  Identities=23%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      .+|.|+.|+..|.....|+.||+--.++.+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            689999999999999999999975444433

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.94  E-value=0.025  Score=31.43  Aligned_cols=24  Identities=21%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             CCcccccCccccCChhhHHHHHhH
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      .+|.|+.|+..|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            567888888888888888888873

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=93.37  E-value=0.03  Score=34.85  Aligned_cols=50  Identities=20%  Similarity=0.373  Sum_probs=28.4

Q ss_pred             HhhccCCCCCCCCccc-ccCccccCChhhHHHHHhHhcCCCCccCCCCccccc
Q psy14244         59 LLSHNCPQMKPRPYKC-DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (226)
Q Consensus        59 l~~H~~~h~~~~~~~C-~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (226)
                      |..|+ .+-...+..| ..|+..+. ...|..|+...-..++..|.+|+..+.
T Consensus         5 l~~H~-~~C~~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~   55 (76)
T 2yuc_A            5 SSGHL-NTCSFNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFS   55 (76)
T ss_dssp             CSCCC-CCCCCSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCC
T ss_pred             HHHHH-HHCCCcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccC
Confidence            44454 3344455666 35766554 344556665555566667777777665

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=93.35  E-value=0.0083  Score=38.23  Aligned_cols=33  Identities=21%  Similarity=0.539  Sum_probs=23.0

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|.|+.||+..........+.|+.|+..|..-
T Consensus        26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg   58 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG   58 (83)
T ss_dssp             SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred             ccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence            357888888755555556677888888877543

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=93.20  E-value=0.031  Score=34.82  Aligned_cols=62  Identities=15%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             cCCCCccC-CCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCCCCCccc
Q psy14244         95 SGIRPFKC-TTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDN  173 (226)
Q Consensus        95 ~~~k~~~C-~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~  173 (226)
                      -.-.+..| ..|+..+.              +..|..|....- ..++..|..|+..|. ...|..|... -+..+..|+
T Consensus        12 C~~~~v~C~~~C~~~v~--------------r~~l~~H~~~~C-~~r~v~C~~C~~~~~-~~~l~~H~~~-Cp~~~v~C~   74 (76)
T 2yuc_A           12 CSFNVIPCPNRCPMKLS--------------RRDLPAHLQHDC-PKRRLKCEFCGCDFS-GEAYESHEGM-CPQESSGPS   74 (76)
T ss_dssp             CCCSCCBCTTCCSCBCC--------------SSSSTTTTTTSC-TTSCCCCSSSCCCCC-HHHHHHTTTS-CTTSSCCCS
T ss_pred             CCCcccCCCccccHHhh--------------HhHHHhhCHhhC-CCcceECCCCCCccC-HHHHHHHHhH-CCCCccCCC
Confidence            34456788 47988876              678888875433 367789999999887 4568888743 333444443

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=92.88  E-value=0.031  Score=34.30  Aligned_cols=31  Identities=26%  Similarity=0.663  Sum_probs=20.0

Q ss_pred             cccCccchhHHHhhcCCCccccCccccccCC
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~   55 (226)
                      .|.|+.||+.--.+.+..++.|..|++.|..
T Consensus        26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             CBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred             CccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence            5777777765444455556777777776654

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=92.80  E-value=0.028  Score=37.20  Aligned_cols=26  Identities=15%  Similarity=0.469  Sum_probs=11.6

Q ss_pred             cccCccchhHHHhhcCCCccccCcccc
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHK   51 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~   51 (226)
                      ||+|..||..| .....++-+|+.|+.
T Consensus        67 p~~C~~CG~~F-~~~~~kPsrCP~CkS   92 (105)
T 2gmg_A           67 PAQCRKCGFVF-KAEINIPSRCPKCKS   92 (105)
T ss_dssp             CCBBTTTCCBC-CCCSSCCSSCSSSCC
T ss_pred             CcChhhCcCee-cccCCCCCCCcCCCC
Confidence            45555555555 222223445555543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.09  E-value=0.028  Score=35.05  Aligned_cols=53  Identities=25%  Similarity=0.361  Sum_probs=40.8

Q ss_pred             hcCCCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhcChhhhhccCC
Q psy14244         94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus        94 h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      +.....|.|..|+.++.              +..+..|...-. +-..|.|-.|++.|.. ..+..|..
T Consensus         5 ~~~MV~F~C~~Cgd~lK--------------K~kv~~H~~~Cr-~~~~~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A            5 SSGMVFFTCNACGESVK--------------KIQVEKHVSNCR-NCECLSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             SCCCCEEEESSSCCEEE--------------TTHHHHHHHHCT-TCCEEEETTTTEEEEG-GGTTTCCC
T ss_pred             CCceeEEEcCCCCCeee--------------cccchhHHhhCC-CCCcEEecccCCeeCC-CCEeCEee
Confidence            34556689999999987              788999975433 3457999999999985 66777853

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.43  E-value=0.13  Score=26.57  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             CcccccCccccCChhhHHHHHhH
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      .|.||+|.+.|.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            48899999999999999999766

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=90.73  E-value=0.15  Score=28.16  Aligned_cols=31  Identities=23%  Similarity=0.565  Sum_probs=20.5

Q ss_pred             CccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhh
Q psy14244         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFF  151 (226)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f  151 (226)
                      -|.|.-||+.|+.              +.|..        --..+|++||...
T Consensus         3 iY~C~rCg~~fs~--------------~el~~--------lP~IrCpyCGyri   33 (48)
T 4ayb_P            3 VYRCGKCWKTFTD--------------EQLKV--------LPGVRCPYCGYKI   33 (48)
T ss_dssp             --CCCCTTTTCCC--------------CCSCC--------CSSSCCTTTCCSC
T ss_pred             EEEeeccCCCccH--------------HHHhh--------CCCcccCccCcEE
Confidence            4899999999974              33332        2346899999754

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=90.38  E-value=0.04  Score=34.31  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             ccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      +|++||....... |...|.+--.        -...|..+..+..-...    =.|+||.||.-|..
T Consensus        10 ~~PlCG~~L~W~e-LIeQML~~en--------~~ei~kDr~~Fl~~~e~----F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           10 KCPICGSPLKWEE-LIEEMLIIEN--------FEEIVKDRERFLAQVEE----FVFKCPVCGEEFYG   63 (95)
T ss_dssp             ECSSSCCEECHHH-HHHHSTTCST--------HHHHTTCHHHHHHHHHH----SEEECTTTCCEEET
T ss_pred             cCCcCCCccCHHH-HHHHHHhhcc--------HHHHHhhHHHHHHHHHH----HhhcCCCccHHHhc
Confidence            5777777766544 4444332111        11234444444333222    23778888777764

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=89.82  E-value=0.041  Score=34.76  Aligned_cols=31  Identities=23%  Similarity=0.582  Sum_probs=18.2

Q ss_pred             cccCccchhHHHhhcCCCccccCccccccCC
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~   55 (226)
                      .|.|+.||+.--.+.+...+.|..|++.|..
T Consensus        35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AG   65 (83)
T 3j21_i           35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAG   65 (83)
T ss_dssp             CBCCSSSCSSCEEEEETTEEEETTTCCEEEC
T ss_pred             ccCCCCCCCceeEecCcCeEEcCCCCCEEeC
Confidence            4667777665333444556666666666643

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=89.68  E-value=0.037  Score=37.22  Aligned_cols=30  Identities=23%  Similarity=0.596  Sum_probs=16.3

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcccccCccccC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFT   82 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   82 (226)
                      .|.|+.||+.     .+.+--     ...+.|..|++.|.
T Consensus        60 kytCPfCGk~-----~vKR~a-----vGIW~C~~Cgk~fA   89 (116)
T 3cc2_Z           60 DHACPNCGED-----RVDRQG-----TGIWQCSYCDYKFT   89 (116)
T ss_dssp             CEECSSSCCE-----EEEEEE-----TTEEEETTTCCEEE
T ss_pred             CCcCCCCCCc-----eeEecC-----ceeEECCCCCCEEE
Confidence            5677777763     122111     13567777777654

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=89.36  E-value=0.055  Score=33.38  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|.|+.||+.-..+.....+.|..|++.|..-
T Consensus        26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG   58 (73)
T 1ffk_W           26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG   58 (73)
T ss_pred             cCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence            468888888754444555678888888887654

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=89.10  E-value=0.04  Score=36.15  Aligned_cols=31  Identities=29%  Similarity=0.732  Sum_probs=18.0

Q ss_pred             cccCccchhHHHhhcCCCccccCccccccCC
Q psy14244         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (226)
Q Consensus        25 ~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~   55 (226)
                      .|.|+.||+.--.+....++.|..|++.|..
T Consensus        36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~AG   66 (103)
T 4a17_Y           36 KYGCPFCGKVAVKRAAVGIWKCKPCKKIIAG   66 (103)
T ss_dssp             CEECTTTCCEEEEEEETTEEEETTTTEEEEC
T ss_pred             CCCCCCCCCceeeecCcceEEcCCCCCEEeC
Confidence            4666666655444444556666666666543

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=88.37  E-value=0.25  Score=32.64  Aligned_cols=31  Identities=26%  Similarity=0.689  Sum_probs=23.3

Q ss_pred             CCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhhhc
Q psy14244         97 IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFG  152 (226)
Q Consensus        97 ~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~f~  152 (226)
                      ..||.|..||..|..             .            ..+|-+|+.|+....
T Consensus        65 v~p~~C~~CG~~F~~-------------~------------~~kPsrCP~CkSe~I   95 (105)
T 2gmg_A           65 IKPAQCRKCGFVFKA-------------E------------INIPSRCPKCKSEWI   95 (105)
T ss_dssp             ECCCBBTTTCCBCCC-------------C------------SSCCSSCSSSCCCCB
T ss_pred             EECcChhhCcCeecc-------------c------------CCCCCCCcCCCCCcc
Confidence            458999999999932             1            357889999986544

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=86.93  E-value=0.067  Score=32.87  Aligned_cols=28  Identities=25%  Similarity=0.809  Sum_probs=21.9

Q ss_pred             ccCccchhHHHhhcCCCccccCccccccCC
Q psy14244         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (226)
Q Consensus        26 ~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~   55 (226)
                      +.|+ |+..+-...+.+...|+ ||+.+.-
T Consensus         5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~   32 (71)
T 1gh9_A            5 FRCD-CGRALYSREGAKTRKCV-CGRTVNV   32 (71)
T ss_dssp             EEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred             EECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence            6788 88887777778888888 9887643

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.84  E-value=0.93  Score=23.56  Aligned_cols=26  Identities=23%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             CCCcccccCccccCChhhHHHHHhHh
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      ...+.|..|+-.|.+...+..|.+--
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             cCcCeeccccceehhhHHHhhhheec
Confidence            34577888888888888888876643

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=86.08  E-value=0.18  Score=28.06  Aligned_cols=12  Identities=25%  Similarity=0.600  Sum_probs=6.2

Q ss_pred             ccccCccccccC
Q psy14244         43 VHKCEYCHKVFD   54 (226)
Q Consensus        43 ~~~C~~C~~~f~   54 (226)
                      .|.|..||..+.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            345555555544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.95  E-value=0.97  Score=28.12  Aligned_cols=43  Identities=19%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             CCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccc
Q psy14244         68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (226)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (226)
                      .-..|.|+.||..+. +..+..|...-.+-..|.|..|++.|..
T Consensus         7 ~MV~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A            7 GMVFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             CCCEEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             ceeEEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC
Confidence            334578888886654 4457778655444456888888888863

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=83.75  E-value=0.29  Score=29.16  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=12.5

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccc
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~   52 (226)
                      ..|.|..||..+.... ..+.+|+.||..
T Consensus        20 v~Y~C~~Cg~~~~l~~-~~~iRC~~CG~R   47 (63)
T 3h0g_L           20 MIYLCADCGARNTIQA-KEVIRCRECGHR   47 (63)
T ss_dssp             CCCBCSSSCCBCCCCS-SSCCCCSSSCCC
T ss_pred             eEEECCCCCCeeecCC-CCceECCCCCcE
Confidence            3355555555444321 223445555543

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=83.12  E-value=0.28  Score=27.70  Aligned_cols=32  Identities=19%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             CcccCccchh-HHHhhcCCCccccCccccccCC
Q psy14244         24 NAYKCHQCQR-LIFLSANAGVHKCEYCHKVFDQ   55 (226)
Q Consensus        24 ~~~~C~~C~k-~f~~~~~~~~~~C~~C~~~f~~   55 (226)
                      ..+.|+.|+. .+..........|..||..+..
T Consensus         4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e   36 (50)
T 1pft_A            4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred             ccEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence            3467888765 3333333345677777776643

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=82.26  E-value=0.49  Score=35.40  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=20.5

Q ss_pred             CCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhh
Q psy14244         97 IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (226)
Q Consensus        97 ~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~  150 (226)
                      ...|.|+.||..+.                           +..|..||+||..
T Consensus       169 ~~~~~C~~CG~i~~---------------------------g~~p~~CP~C~~~  195 (202)
T 1yuz_A          169 DKFHLCPICGYIHK---------------------------GEDFEKCPICFRP  195 (202)
T ss_dssp             CCEEECSSSCCEEE---------------------------SSCCSBCTTTCCB
T ss_pred             CcEEEECCCCCEEc---------------------------CcCCCCCCCCCCC
Confidence            34699999998763                           2467899999853

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=82.16  E-value=0.44  Score=35.66  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCccc
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKS  108 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~  108 (226)
                      ...|.|.+||..+.             |..|+.||.|+..
T Consensus       169 ~~~~~C~~CG~i~~-------------g~~p~~CP~C~~~  195 (202)
T 1yuz_A          169 DKFHLCPICGYIHK-------------GEDFEKCPICFRP  195 (202)
T ss_dssp             CCEEECSSSCCEEE-------------SSCCSBCTTTCCB
T ss_pred             CcEEEECCCCCEEc-------------CcCCCCCCCCCCC
Confidence            35688888887764             2467888888753

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=81.62  E-value=0.34  Score=29.64  Aligned_cols=12  Identities=17%  Similarity=0.418  Sum_probs=6.5

Q ss_pred             ccccCccccccC
Q psy14244         43 VHKCEYCHKVFD   54 (226)
Q Consensus        43 ~~~C~~C~~~f~   54 (226)
                      .|.|..||..|.
T Consensus        28 ~Y~C~~CG~~~e   39 (70)
T 1twf_L           28 KYICAECSSKLS   39 (70)
T ss_dssp             CEECSSSCCEEC
T ss_pred             EEECCCCCCcce
Confidence            455556655553

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=80.95  E-value=0.32  Score=27.84  Aligned_cols=7  Identities=29%  Similarity=1.075  Sum_probs=3.7

Q ss_pred             cccccCc
Q psy14244         72 YKCDTCE   78 (226)
Q Consensus        72 ~~C~~C~   78 (226)
                      +.|++|+
T Consensus        36 w~CP~Cg   42 (52)
T 1yk4_A           36 WVCPLCG   42 (52)
T ss_dssp             CBCTTTC
T ss_pred             CcCCCCC
Confidence            4555555

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=80.53  E-value=0.89  Score=28.93  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=24.0

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (226)
                      +....|-+||+.|..   |.+|++.++|..|..+
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSCHHHH
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCCHHHH
Confidence            445789999999985   7799999888776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-08
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	4e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	6e-07
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	9e-05
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	2e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	5e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-06
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	4e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	6e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	6e-05
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	6e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	7e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	9e-05
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	2e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	2e-04
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	2e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	0.001
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	0.002
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	0.004
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.003
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.003
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.003
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.004
d2crua1	105	a.5.6.1 (A:8-112) Programmed cell death protein 5	0.003
d2epra1	35	g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [	0.004
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (113), Expect = 1e-08
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKC 102
           +PY C +C K F+   +LN H + +H+  RP KC
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (102), Expect = 4e-07
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +PY C  C K+F+ S  L  HQ +H+G
Sbjct: 6  KPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (74), Expect = 0.003
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 13/39 (33%)

Query: 93  IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
           IHSG +P+ C  C K+F                S L QH
Sbjct: 1   IHSGEKPYGCVECGKAF-------------SRSSILVQH 26

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 6e-07
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
          + C+ C K F  +S    H    +  RPY C  C K F    +L  H  IH
Sbjct: 4  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 9e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           + Y C  C KSFT+    + H  +H G+RP+ C  C K F
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 40

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          R + C+ C ++F   ++L  H   H+ 
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTN 27

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +P++C  C ++F+ S +L TH   H+G
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 5e-06
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 72  YKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           + C    C KSF   ++L  H  +HS  R + C
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 8e-06
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +PY C  C+K+F   Q L+ H   +  
Sbjct: 7  KPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          + + C  C K F  S +L+ H   H  
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQN 27

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          RP+ C  C  +FT   N   H  +H+ 
Sbjct: 6  RPFVCRICLSAFTTKANCARHLKVHTD 32

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 6e-05
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          +P+KC    C KS++  +NL TH   H+G
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 6e-05
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
          +P++C  C++SF+ S +L  H+  H  +
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHMLV 37

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (86), Expect = 6e-05
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          RPY C   +C++ F+ S +L  H  IH+G
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG 96
          RP+ C    C K FT S  L  H+  H+G
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 8e-05
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +PY+C  C   FT S  +  H L    
Sbjct: 7  KPYECYICHARFTQSGTMKMHILQKHT 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 0.004
 Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 13/39 (33%)

Query: 93  IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
            HSG +P++C  C   F                  +  H
Sbjct: 2   THSGEKPYECYICHARF-------------TQSGTMKMH 27

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (85), Expect = 9e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
          +PYKC  C K+F+ +  L  HQ IH+
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          RPY CD   C+K+F  + +L  H+  H  
Sbjct: 2  RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          R YKCD C KSF++S +L+ H+  H+G
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHS 95
          RPY C    C K F  S NL +H L H+
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          +P++C    C K F+   NL TH  IH+G
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
           N   Q+  N     +      +  +  QQQQQQ+    ++Q Q QQQ+++  
Sbjct: 145 NFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 196

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
              +  +  QQQQQQ+    ++Q Q QQQ+++  S
Sbjct: 163 PDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGS 197

>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Programmed cell death protein 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 3/30 (10%), Positives = 13/30 (43%)

Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
           ++ + Q +        QQ+ + ++ + +  
Sbjct: 5   RLAELQAKHGDPGDAAQQEAKHREAEMRNS 34

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (72), Expect = 0.004
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +   C+ C K F +  +LN H+L HSG +P+
Sbjct: 4   KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
          PR Y C  C++ F ++Q L  H  +H   R
Sbjct: 3  PRSYTCSFCKREFRSAQALGGHMNVHRRDR 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.61
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.57
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.33
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.27
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.21
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.15
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.11
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.09
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.08
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.05
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.04
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.03
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.01
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.0
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.97
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.95
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.78
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.75
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.75
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.71
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.71
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.69
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.69
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.57
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.51
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.46
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.45
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.37
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.35
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.07
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.02
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.9
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.83
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.79
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.77
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.74
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.68
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.64
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.61
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.56
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.53
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.37
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.36
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.32
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.31
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.31
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.26
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.21
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.07
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.0
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.99
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.98
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.93
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.92
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.88
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.64
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.6
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.57
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.5
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.46
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.45
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.22
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.11
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.08
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.97
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.91
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.43
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.37
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.22
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.17
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.1
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.0
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.96
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.84
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.48
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.8
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.49
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.48
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.41
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.05
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.61
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	92.38
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.25
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	92.23
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.23
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.72
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.0
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.9
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.26
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.04
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	88.8
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	88.11
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	87.83
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	86.01
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.92
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.89
d2dkta1	74	RING finger and CHY zinc finger domain-containing	84.49
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	84.32
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	84.25
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	82.72
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	82.14
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	81.29
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	80.64
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	80.61

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.4e-17  Score=94.53  Aligned_cols=53  Identities=36%  Similarity=0.774  Sum_probs=40.9

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccccccCCCCCCCCCCCCCcccccccccc
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (226)
                      |+||.|+ ||+.|.....|..|+++|++++||.|+.|+++|..             .+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~-------------~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKM-------------KHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESS-------------SHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecC-------------HHHHHHHHhcC
Confidence            5678884 88888888888888888888888888888888877             77777777654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-16  Score=93.00  Aligned_cols=52  Identities=33%  Similarity=0.621  Sum_probs=49.9

Q ss_pred             CccccCccccccCChhHHhhccCCCCCCCCcccccCccccCChhhHHHHHhHh
Q psy14244         42 GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        42 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      ++|+|+ ||+.|.....|..|+++|++++||.|++||+.|.....|..|+++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589995 9999999999999999999999999999999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.3e-13  Score=72.24  Aligned_cols=37  Identities=41%  Similarity=0.748  Sum_probs=35.8

Q ss_pred             hccCCCCCCCCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +|+++|++++||.|++||++|...+.|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-13  Score=73.74  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             CCCCccCCcchhhhcChhhhhccCC-CCCCCCCCcccc
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQC-GPEDIKPNVDNL  174 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~c~~  174 (226)
                      .+|||.|+.||+.|+..++|..|++ +|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4799999999999999999999986 899999999975

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.4e-13  Score=70.98  Aligned_cols=37  Identities=38%  Similarity=0.865  Sum_probs=30.8

Q ss_pred             CCCCcccccCccccCChhhHHHHHh-HhcCCCCccCCC
Q psy14244         68 KPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTT  104 (226)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~  104 (226)
                      .++||.|+.||+.|.....|..|++ +|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4688888888888888888888876 688888888864

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.3e-13  Score=71.87  Aligned_cols=37  Identities=19%  Similarity=0.403  Sum_probs=34.6

Q ss_pred             ccccccCCCCCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       130 ~H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      +|.++|+ +++||+|+.||++|...++|..|+++|+||
T Consensus         2 rH~~~Ht-~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQR-ERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCC-CSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccC-CCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5777888 799999999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.9e-12  Score=65.66  Aligned_cols=33  Identities=36%  Similarity=0.680  Sum_probs=31.6

Q ss_pred             CCCCCCCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +|++++||.|..||++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.6e-11  Score=65.51  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=33.3

Q ss_pred             ccCCCCCCCCcccccCccccCChhhHHHHHhHhcC
Q psy14244         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      |.++|+|++||.|+.|++.|.....|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78999999999999999999999999999999964

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=65.48  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=32.7

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      ++|+|++||.|.+||++|.....|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            58999999999999999999999999999998763

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.8e-12  Score=66.24  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=30.0

Q ss_pred             cCCCCCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        135 NSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       135 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |+ ++|||+|..||++|..+++|..|+++|+|+
T Consensus         2 HT-gekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HS-GEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TT-TCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cC-CCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            55 799999999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.09  E-value=5.9e-12  Score=63.12  Aligned_cols=29  Identities=21%  Similarity=0.515  Sum_probs=27.8

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|++||+.|+..+.|..|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=9.1e-12  Score=66.45  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             cccccCCCCCCccCCcchhhhcChhhhhccCCCCCC
Q psy14244        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       131 H~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      |.++|+ ++|||.|+.||++|..+++|..|+++|.+
T Consensus         2 h~R~HT-geKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGST-GIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTC-CSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccC-CccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            667888 79999999999999999999999999875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.4e-12  Score=66.58  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=31.5

Q ss_pred             cccCCCCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       133 ~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      ++|+ |++||+|+.||++|..++.|..|+++|+++.
T Consensus         1 R~HT-gekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHT-GEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCC-CCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCC-CCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            3566 7999999999999999999999999998763

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=5e-11  Score=62.25  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=30.5

Q ss_pred             CCCCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      |+|++||.|++|++.|.....|..|+++|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            789999999999999999999999999998753

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.04  E-value=5.9e-11  Score=59.37  Aligned_cols=29  Identities=24%  Similarity=0.709  Sum_probs=23.8

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|++|++.|.....|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888888888888888888888888875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.6e-12  Score=62.23  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=27.8

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      |||.|++||+.|..++.|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8e-11  Score=61.97  Aligned_cols=33  Identities=33%  Similarity=0.742  Sum_probs=29.5

Q ss_pred             ccccc--CccccCChhhHHHHHhHhcCCCCccCCC
Q psy14244         72 YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (226)
Q Consensus        72 ~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (226)
                      |.|++  |+++|.....|..|+++|+|++||.|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67876  9999999999999999999999999974

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.1e-10  Score=61.62  Aligned_cols=34  Identities=26%  Similarity=0.515  Sum_probs=30.2

Q ss_pred             CCCCCCCCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      ++|+|++||.|++|++.|.....|..|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            5899999999999999999999999998765443

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=3.2e-11  Score=67.68  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=37.5

Q ss_pred             hhHHhhccCCCCCCCCccccc--CccccCChhhHHHHHhHhcCCC
Q psy14244         56 QSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        56 ~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+.|..|+. |++++||.|++  |++.|.....|..|+++|+|++
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            345677774 99999999987  9999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.1e-12  Score=62.58  Aligned_cols=28  Identities=29%  Similarity=0.541  Sum_probs=26.6

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      ||||+|+.||+.|..+++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999976

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=58.07  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=25.8

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|++||+.|...+.|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58899999999999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=2.7e-11  Score=63.31  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |+|||.|++|++.|+.+++|..|+++|+..
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCccccCCCCCCcccChHHHHHHccccCCc
Confidence            799999999999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.2e-10  Score=57.56  Aligned_cols=28  Identities=36%  Similarity=0.903  Sum_probs=26.0

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      |+||.|++|+++|.....|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=2.2e-11  Score=68.35  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             CccccccccccCCCCCCccCCc--chhhhcChhhhhccCCCCCCCC
Q psy14244        125 KSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       125 ~~~l~~H~~~~~~~~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +..+..|+. +. +++||.|++  ||+.|..+++|..|+++|+|++
T Consensus         4 ~~~l~~h~~-h~-gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EM-PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EE-TTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchhh-cc-CCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            567788874 66 799999988  9999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.7e-11  Score=63.44  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             ccCCCCCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       134 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      +|+ |++||.|++||+.|+.+++|..|++.++++
T Consensus         2 ~HT-gekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THS-GEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCS-CCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccC-CCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            566 799999999999999999999998665543

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.5e-11  Score=61.69  Aligned_cols=33  Identities=18%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             ccCCc--chhhhcChhhhhccCCCCCCCCCCcccc
Q psy14244        142 YQCDR--CSQFFGDRMNLISHQCGPEDIKPNVDNL  174 (226)
Q Consensus       142 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~c~~  174 (226)
                      |.|+.  ||+.|..++.|.+|+++|+|++||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            77876  9999999999999999999999999973

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.1e-10  Score=56.45  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=26.9

Q ss_pred             CCccCC--cchhhhcChhhhhccCCCCCCCC
Q psy14244        140 KPYQCD--RCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       140 k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      +||.|+  .||+.|+..++|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689995  59999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.7e-10  Score=57.15  Aligned_cols=28  Identities=25%  Similarity=0.422  Sum_probs=26.7

Q ss_pred             CCccCCc--chhhhcChhhhhccCCCCCCC
Q psy14244        140 KPYQCDR--CSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       140 k~~~C~~--C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |||.|++  ||++|+.++.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999988  999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.7e-09  Score=53.43  Aligned_cols=28  Identities=43%  Similarity=0.801  Sum_probs=24.5

Q ss_pred             CCccccc--CccccCChhhHHHHHhHhcCC
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +||.|++  |+++|.....|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5888988  999999999999999999886

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1e-10  Score=56.29  Aligned_cols=26  Identities=38%  Similarity=0.723  Sum_probs=24.2

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      |||+|+.||++|..++.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999998773

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.5e-09  Score=51.34  Aligned_cols=26  Identities=46%  Similarity=0.949  Sum_probs=22.5

Q ss_pred             CCcccccCccccCChhhHHHHHhHhc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      +||+|..||++|...+.|..|.++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58889999999999999999988885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.9e-09  Score=53.37  Aligned_cols=28  Identities=43%  Similarity=0.839  Sum_probs=25.3

Q ss_pred             CCccccc--CccccCChhhHHHHHhHhcCC
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +||.|++  |+++|.....|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899977  999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.9e-09  Score=53.00  Aligned_cols=29  Identities=41%  Similarity=0.878  Sum_probs=22.2

Q ss_pred             CCcccc--cCccccCChhhHHHHHhHhcCCC
Q psy14244         70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        70 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      +||.|+  .|+++|.....|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            477785  48888888888888888888775

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.6e-10  Score=57.37  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=26.3

Q ss_pred             CCccCCc--chhhhcChhhhhccCCCCCCC
Q psy14244        140 KPYQCDR--CSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       140 k~~~C~~--C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |||.|++  ||++|+..++|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999987  999999999999999999885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=4.5e-09  Score=53.41  Aligned_cols=29  Identities=31%  Similarity=0.739  Sum_probs=26.9

Q ss_pred             CCCccCCc--chhhhcChhhhhccCCCCCCC
Q psy14244        139 PKPYQCDR--CSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       139 ~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      |+||.|++  ||+.|++.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999988  999999999999999999864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.6e-09  Score=46.89  Aligned_cols=26  Identities=23%  Similarity=0.544  Sum_probs=24.5

Q ss_pred             CccCCcchhhhcChhhhhccCCCCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      |.+|+.||+.|+++..|..||+.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            67999999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=3.2e-09  Score=52.67  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=25.1

Q ss_pred             CCccCCc--chhhhcChhhhhccCCCCCC
Q psy14244        140 KPYQCDR--CSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       140 k~~~C~~--C~~~f~~~~~L~~H~~~h~~  166 (226)
                      |||.|++  ||+.|++.++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999977  99999999999999999875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=6.2e-08  Score=49.08  Aligned_cols=29  Identities=38%  Similarity=0.843  Sum_probs=24.8

Q ss_pred             CCCccccc--CccccCChhhHHHHHhHhcCC
Q psy14244         69 PRPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        69 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      ++||.|++  |++.|.....|..|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57899987  999999999999999998753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=3.2e-08  Score=48.93  Aligned_cols=27  Identities=44%  Similarity=1.042  Sum_probs=23.6

Q ss_pred             CCccccc--CccccCChhhHHHHHhHhcC
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   96 (226)
                      +||.|++  |+++|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5888977  99999999999999999876

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=8.1e-09  Score=50.58  Aligned_cols=26  Identities=35%  Similarity=0.650  Sum_probs=24.0

Q ss_pred             CCccCCc--chhhhcChhhhhccCCCCC
Q psy14244        140 KPYQCDR--CSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       140 k~~~C~~--C~~~f~~~~~L~~H~~~h~  165 (226)
                      +||.|++  ||++|+..++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999988  9999999999999998874

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-07  Score=43.31  Aligned_cols=25  Identities=40%  Similarity=0.838  Sum_probs=14.4

Q ss_pred             cccccCccccCChhhHHHHHhHhcC
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      .+|++|++-|+.+..|..|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4555566666666666666655553

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=8.8e-08  Score=46.79  Aligned_cols=26  Identities=50%  Similarity=0.998  Sum_probs=22.7

Q ss_pred             CCccccc--CccccCChhhHHHHHhHhc
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   95 (226)
                      +||.|++  |+++|...+.|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5888987  9999999999999999885

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.3e-07  Score=46.30  Aligned_cols=30  Identities=40%  Similarity=0.847  Sum_probs=20.2

Q ss_pred             CcccccCccccCChhhHHHHHhHhcCCCCc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPF  100 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~  100 (226)
                      ...|+.||+.|.....|.+|..+|++|+||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            345666777777777777776667777665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=3.6e-08  Score=46.50  Aligned_cols=27  Identities=26%  Similarity=0.424  Sum_probs=25.1

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      ++||.|.+||+.|.++....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999998875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.6e-07  Score=43.51  Aligned_cols=27  Identities=33%  Similarity=0.811  Sum_probs=24.5

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhc
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      ++||.|++||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999884

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2e-07  Score=45.58  Aligned_cols=31  Identities=29%  Similarity=0.579  Sum_probs=28.7

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCCCcc
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYK   73 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   73 (226)
                      .+.|+.||+.|.+...|.+|..+|++++||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            4679999999999999999999999999983

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-06  Score=41.78  Aligned_cols=29  Identities=28%  Similarity=0.681  Sum_probs=26.1

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      ++||.|++|...|..+.-+.-|+++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57999999999999999999999999764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=9.7e-08  Score=45.66  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=26.9

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      +|||.|++|+..|.++..+..|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999998774

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.6e-07  Score=42.00  Aligned_cols=29  Identities=17%  Similarity=0.368  Sum_probs=27.3

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      ++||+|..|.+.-.+++.|..|+++|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            58999999999999999999999999985

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.2e-06  Score=38.85  Aligned_cols=27  Identities=26%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             cccccCccccCChhhHHHHHhHhcCCC
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      |.|+.|+....-++.|..|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            667777777777777777777777764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.7e-06  Score=39.45  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             cccCccccccCChhHHhhccCCCCCC
Q psy14244         44 HKCEYCHKVFDQQSSLLSHNCPQMKP   69 (226)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~~~   69 (226)
                      |.|..||+.|...+.|++|..+|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            56777777777777777777777664

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=8.4e-07  Score=42.34  Aligned_cols=27  Identities=30%  Similarity=0.575  Sum_probs=24.1

Q ss_pred             CCccCCc--chhhhcChhhhhccCCCCCC
Q psy14244        140 KPYQCDR--CSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       140 k~~~C~~--C~~~f~~~~~L~~H~~~h~~  166 (226)
                      |||.|.+  |+++|+..++|+.|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899976  99999999999999997765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7e-06  Score=38.18  Aligned_cols=28  Identities=39%  Similarity=0.771  Sum_probs=20.9

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      ++||+|..|...-.+.+.|..|++.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4677777777777777777777777775

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.5e-06  Score=39.52  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=24.1

Q ss_pred             ccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      ..|..||+.|..++.|++|..+|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57999999999999999999999885

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=4.7e-06  Score=39.01  Aligned_cols=28  Identities=25%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             ccccCccccccCChhHHhhccCCCCCCC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPR   70 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   70 (226)
                      .|.|++||......+.|..|+++|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3789999999999999999999999874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.64  E-value=5.1e-06  Score=37.31  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=22.5

Q ss_pred             ccCCcchhhhcChhhhhccCCCCC
Q psy14244        142 YQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       142 ~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      |+|..|.++|..++.|.+|.++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=2.6e-05  Score=35.49  Aligned_cols=26  Identities=35%  Similarity=0.700  Sum_probs=20.0

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCC
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .|+.|.+.|.++.-|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            47778888888888888877787764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=7.2e-06  Score=42.31  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=22.6

Q ss_pred             CCCCccCCcchhhhcChhhhhccC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQ  161 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~  161 (226)
                      |.|||.|.+|++.|.++.++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            679999999999999999999995

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.6e-05  Score=37.05  Aligned_cols=27  Identities=33%  Similarity=0.783  Sum_probs=22.6

Q ss_pred             CCccccc--CccccCChhhHHHHHhHhcC
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   96 (226)
                      +||.|.+  |+++|...+.|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788877  89999999999999987654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=9e-05  Score=34.73  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=22.7

Q ss_pred             CCcccccCccccCChhhHHHHHhHhc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      +||.|..|.......++|..|+++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            58999999999999999999998833

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.9e-05  Score=34.71  Aligned_cols=26  Identities=50%  Similarity=0.962  Sum_probs=21.5

Q ss_pred             CCcccccCccccCChhhHHHHHhHhc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      +||+|..|+..-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            67888888888888888888888875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.36  E-value=6.4e-05  Score=38.45  Aligned_cols=30  Identities=37%  Similarity=0.792  Sum_probs=23.6

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+.|.|.+|++.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            356888888888888888888888886554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=1.3e-05  Score=36.49  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=24.1

Q ss_pred             ccCccccccCChhHHhhccCCCCCCC
Q psy14244         45 KCEYCHKVFDQQSSLLSHNCPQMKPR   70 (226)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~   70 (226)
                      .|+.|.+.|.++..|+.|.+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            59999999999999999999999874

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=9.6e-06  Score=37.41  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=24.3

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      +||+|..|++.-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999998875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=9.1e-05  Score=34.50  Aligned_cols=29  Identities=24%  Similarity=0.673  Sum_probs=22.9

Q ss_pred             CCCcccccCccccCChhhHHHHHhHhcCC
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +..|.|..|...|...-.|+.||-+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34678888888888888888888888775

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=2e-05  Score=36.84  Aligned_cols=25  Identities=32%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             CccCCcchhhhcChhhhhccCCCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCGPE  165 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~h~  165 (226)
                      ||.|..|+..|..+.+|..||++..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            7999999999999999999997643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.21  E-value=2.8e-05  Score=39.79  Aligned_cols=31  Identities=23%  Similarity=0.421  Sum_probs=27.4

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDIKP  169 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  169 (226)
                      .+.|.|.+|++.|.+...|=-||+.|..++.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchHH
Confidence            4679999999999999999999999976653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0002  Score=36.79  Aligned_cols=26  Identities=27%  Similarity=0.682  Sum_probs=20.0

Q ss_pred             CCCCCcccccCccccCChhhHHHHHh
Q psy14244         67 MKPRPYKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      +|-+||.|.+|++.|-....+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46678888888888888888877754

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=2.2e-05  Score=36.60  Aligned_cols=29  Identities=24%  Similarity=0.486  Sum_probs=26.2

Q ss_pred             CCCccCCcchhhhcChhhhhccCCCCCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      +.-|.|..|...|.++..|+.||-+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45689999999999999999999999875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.99  E-value=0.00029  Score=31.42  Aligned_cols=23  Identities=48%  Similarity=1.006  Sum_probs=14.3

Q ss_pred             cccccCccccCChhhHHHHHhHh
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h   94 (226)
                      |+|..|.+.|..++.|.+|.+.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45666666666666666666655

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.98  E-value=0.00021  Score=33.19  Aligned_cols=25  Identities=36%  Similarity=0.903  Sum_probs=21.0

Q ss_pred             CCccccc--CccccCChhhHHHHHhHh
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h   94 (226)
                      .||.|+.  |++.|...+-|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788865  999999999999998877

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00025  Score=33.01  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=20.4

Q ss_pred             CcccccCccccCChhhHHHHHhHhc
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      ||.|..|...|.++.+|..||++.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            6788888888888888888887743

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=5.9e-05  Score=36.14  Aligned_cols=27  Identities=33%  Similarity=0.727  Sum_probs=23.4

Q ss_pred             CCccCCc--chhhhcChhhhhccC-CCCCC
Q psy14244        140 KPYQCDR--CSQFFGDRMNLISHQ-CGPED  166 (226)
Q Consensus       140 k~~~C~~--C~~~f~~~~~L~~H~-~~h~~  166 (226)
                      +||.|.+  |++.|++.++-..|. ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6899977  999999999999996 77754

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0001  Score=34.50  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=24.6

Q ss_pred             CCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCC
Q psy14244         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP  139 (226)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~  139 (226)
                      +||.|..|......             .++|..|+++.+..+
T Consensus         1 kpy~cqyc~yrsad-------------ssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSAD-------------SSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSC-------------SHHHHHHHHHHTSSC
T ss_pred             CCcccccccccccc-------------chhhhhhhhcccccC
Confidence            68999999998887             899999998877443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00033  Score=33.47  Aligned_cols=27  Identities=41%  Similarity=0.919  Sum_probs=20.1

Q ss_pred             CCccccc--CccccCChhhHHHHH-hHhcC
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQ-LIHSG   96 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~~   96 (226)
                      +||.|.+  |.++|++.+.-..|. |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4777866  888888888877785 66654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.60  E-value=0.00067  Score=31.58  Aligned_cols=28  Identities=43%  Similarity=0.968  Sum_probs=21.9

Q ss_pred             CCccccc--CccccCChhhHHHHHhHhcCC
Q psy14244         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +||.|..  |.+.|.+.-.|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677754  888888888888888888775

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.57  E-value=0.00021  Score=34.18  Aligned_cols=26  Identities=35%  Similarity=0.595  Sum_probs=22.4

Q ss_pred             CccCCcchhhhcChhhhhccCC-CCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQC-GPED  166 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~-~h~~  166 (226)
                      ||.|.+|++.|+++.-|.+|.. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999964 4544

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.50  E-value=5.9e-05  Score=35.09  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             CCccCC--cchhhhcChhhhhccCCCC
Q psy14244        140 KPYQCD--RCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       140 k~~~C~--~C~~~f~~~~~L~~H~~~h  164 (226)
                      .||+|+  -|++.|+..+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            488995  4999999999999997665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=5.8e-05  Score=35.32  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=23.3

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      +||+|+.|.......++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999999999999999865444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.00031  Score=32.11  Aligned_cols=21  Identities=29%  Similarity=0.941  Sum_probs=19.4

Q ss_pred             CccCCcchhhhcChhhhhccC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQ  161 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~  161 (226)
                      ||.|+.||+.|-++.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            799999999999999999885

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0003  Score=31.37  Aligned_cols=22  Identities=45%  Similarity=0.887  Sum_probs=20.1

Q ss_pred             CccCCcchhhhcChhhhhccCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      ||+|..|...|..+.+|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999873

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0004  Score=31.95  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=23.5

Q ss_pred             CccCCcchhhhcChhhhhccCCCCCC
Q psy14244        141 PYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       141 ~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      |-+|+.|.++.+++..|+.|.++|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999998864

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.08  E-value=0.0015  Score=31.15  Aligned_cols=26  Identities=46%  Similarity=0.933  Sum_probs=16.3

Q ss_pred             CcccccCccccCChhhHHHHHh-HhcC
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQL-IHSG   96 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~-~h~~   96 (226)
                      ||.|.+|++.|.....|.+|.. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            5667777777777766666643 3443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0027  Score=32.03  Aligned_cols=28  Identities=32%  Similarity=0.759  Sum_probs=24.1

Q ss_pred             CCCCccc--ccCccccCChhhHHHHHhHhc
Q psy14244         68 KPRPYKC--DTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        68 ~~~~~~C--~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  559999999999999988775

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0026  Score=29.59  Aligned_cols=26  Identities=31%  Similarity=0.639  Sum_probs=22.2

Q ss_pred             CCcccccCccccCChhhHHHHHhHhc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      +||+|..|.......++|..|++.-+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            58999999999999999999988643

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0044  Score=30.52  Aligned_cols=20  Identities=25%  Similarity=0.285  Sum_probs=16.6

Q ss_pred             ccccCChhhHHHHHhHhcCC
Q psy14244         78 EKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        78 ~~~f~~~~~l~~H~~~h~~~   97 (226)
                      ++.|.....|..|+|+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45688888999999999886

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0066  Score=27.56  Aligned_cols=23  Identities=30%  Similarity=0.762  Sum_probs=18.3

Q ss_pred             CcccccCccccCChhhHHHHHhH
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      ||.|..||+.|-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            67888888888888888887654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0019  Score=31.50  Aligned_cols=27  Identities=19%  Similarity=0.492  Sum_probs=22.5

Q ss_pred             CCccCCcchhhhcChhhhhccCCCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGPED  166 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h~~  166 (226)
                      ..|.|..||+.|+++..+.+|-....|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            468999999999999999999655444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0082  Score=27.42  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=16.5

Q ss_pred             cccccCccccCChhhHHHHHhHhc
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      -+|+.|....+++..|+.|.|+|.
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            457777777777777777777664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.006  Score=26.99  Aligned_cols=22  Identities=36%  Similarity=1.065  Sum_probs=18.3

Q ss_pred             CcccccCccccCChhhHHHHHh
Q psy14244         71 PYKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      ||+|..|...|-.+..|..||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7888888888888888888864

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0022  Score=34.03  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CCccCCcchhhhcChhhhhccCCCC
Q psy14244        140 KPYQCDRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       140 k~~~C~~C~~~f~~~~~L~~H~~~h  164 (226)
                      .-|.|..||+.|+....|+.|..-|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            3589999999999999999997544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.00  E-value=0.00054  Score=31.90  Aligned_cols=28  Identities=25%  Similarity=0.524  Sum_probs=23.4

Q ss_pred             CCccC--CcchhhhcChhhhhccCCCCCCC
Q psy14244        140 KPYQC--DRCSQFFGDRMNLISHQCGPEDI  167 (226)
Q Consensus       140 k~~~C--~~C~~~f~~~~~L~~H~~~h~~~  167 (226)
                      +||.|  +-|.+.|.....|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            57778  45999999999999998888764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0082  Score=31.76  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=23.3

Q ss_pred             CCcccccCccccCChhhHHHHHhHhc
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      ..|.|..|++.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            46899999999999999999998874

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.84  E-value=0.0086  Score=26.59  Aligned_cols=22  Identities=41%  Similarity=0.783  Sum_probs=17.8

Q ss_pred             cccccCccccCChhhHHHHHhH
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      |.|+.|-+.|..+.++..|+++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888888888888888775

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0012  Score=33.32  Aligned_cols=27  Identities=30%  Similarity=0.534  Sum_probs=23.1

Q ss_pred             CCCCccC--CcchhhhcChhhhhccCCCC
Q psy14244        138 FPKPYQC--DRCSQFFGDRMNLISHQCGP  164 (226)
Q Consensus       138 ~~k~~~C--~~C~~~f~~~~~L~~H~~~h  164 (226)
                      .+|||.|  +-|+..|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            3799999  67999999999999986554

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.80  E-value=0.0094  Score=28.66  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=21.2

Q ss_pred             CCCccCCcchhhhcChhhhhccCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQC  162 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~  162 (226)
                      ...|.|+-||..|+..+.|..|..
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            456899999999999999999963

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.024  Score=25.76  Aligned_cols=22  Identities=18%  Similarity=0.582  Sum_probs=17.1

Q ss_pred             cccccCccccCChhhHHHHHhH
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      |.|+.|+.....++.|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            6788888888888888888765

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.48  E-value=0.015  Score=29.56  Aligned_cols=27  Identities=22%  Similarity=0.487  Sum_probs=20.6

Q ss_pred             CCCccCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCCCccCCcchhh
Q psy14244         97 IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (226)
Q Consensus        97 ~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~k~~~C~~C~~~  150 (226)
                      ++.|.|+.||..+.                           ++.|-.|++||..
T Consensus         3 ~~~~~C~vCG~i~~---------------------------g~~P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYTAV---------------------------DEAPEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCEEE---------------------------SCCCSBCTTTCCB
T ss_pred             CcEEECCCCCCEec---------------------------CCCCCcCCCCCCc
Confidence            35689999998765                           3567889999864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.0045  Score=30.46  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             cCccccccCChhHHhhccCCCCCC
Q psy14244         46 CEYCHKVFDQQSSLLSHNCPQMKP   69 (226)
Q Consensus        46 C~~C~~~f~~~~~l~~H~~~h~~~   69 (226)
                      |+.=++.|.....|..|+++|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            666678899999999999999986

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.033  Score=26.93  Aligned_cols=27  Identities=26%  Similarity=0.607  Sum_probs=20.6

Q ss_pred             CCcccccCccccCChhhHHHHHhHhcC
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      ..|.|..|++.|.....+.+|...-+|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            357888888888888888888766554

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.61  E-value=0.027  Score=28.35  Aligned_cols=12  Identities=17%  Similarity=0.426  Sum_probs=6.9

Q ss_pred             CCccCCCCcccc
Q psy14244         98 RPFKCTTCDKSF  109 (226)
Q Consensus        98 k~~~C~~C~~~f  109 (226)
                      +.|.|+.||...
T Consensus         4 ~~~vC~vCGyi~   15 (36)
T d1yuza2           4 KFHLCPICGYIH   15 (36)
T ss_dssp             CEEECSSSCCEE
T ss_pred             CEEECCCCCCEe
Confidence            446666666554

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.38  E-value=0.0076  Score=35.56  Aligned_cols=33  Identities=21%  Similarity=0.539  Sum_probs=26.1

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|.||.|++.-..+....++.|..|++.|...
T Consensus        26 ~ky~Cp~Cgk~~vkR~a~GIW~C~kC~~~~AGG   58 (73)
T d1vqoz1          26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG   58 (73)
T ss_dssp             SCBCCSSSSCSCEEEEETTEEEETTTCCEEECC
T ss_pred             CCccCCCCCCceeEEEEEEEEECCCCCCEEeCC
Confidence            468899999876667777888999999888653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.25  E-value=0.024  Score=25.07  Aligned_cols=22  Identities=27%  Similarity=0.673  Sum_probs=19.1

Q ss_pred             ccccCccccccCChhHHhhccC
Q psy14244         43 VHKCEYCHKVFDQQSSLLSHNC   64 (226)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~   64 (226)
                      .|.|+.|-+.|..+.+|..|.+
T Consensus         1 vypcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEE
Confidence            4789999999999999998854

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.23  E-value=0.008  Score=35.46  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=25.2

Q ss_pred             CcccCccchhHHHhhcCCCccccCccccccCCh
Q psy14244         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (226)
Q Consensus        24 ~~~~C~~C~k~f~~~~~~~~~~C~~C~~~f~~~   56 (226)
                      ..|.|+.||+.-..+....++.|..|++.|...
T Consensus        26 ~ky~Cp~Cgk~~vkR~a~GIW~C~kC~~~~AGg   58 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRAGTGIWMCGHCGYKIAGG   58 (73)
T ss_dssp             SCBCCSSSCCSCEEEEETTEEEETTTCCEEECC
T ss_pred             CCccCCCCCCCceEEEEEEEEECCCCCCEEeCc
Confidence            458899998766666777788888888887643

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.23  E-value=0.061  Score=25.71  Aligned_cols=24  Identities=29%  Similarity=0.703  Sum_probs=19.6

Q ss_pred             CCCcccccCccccCChhhHHHHHh
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQL   92 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~   92 (226)
                      ...|.|+-||-.|++.+.|..|..
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            345889999999999999988854

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.72  E-value=0.061  Score=25.19  Aligned_cols=28  Identities=25%  Similarity=0.634  Sum_probs=22.6

Q ss_pred             CCcccc--cCccccCChhhHHHHHhHhcCC
Q psy14244         70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGI   97 (226)
Q Consensus        70 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   97 (226)
                      +.|.|.  .|+..|...-.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            346664  5999999999999999989885

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.04  Score=31.98  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=19.6

Q ss_pred             CCcccccCccccCChhhHHHHHhH
Q psy14244         70 RPYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      ..|.|..|++.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            347888888888888888888775

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.90  E-value=0.14  Score=26.77  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=24.1

Q ss_pred             CCCCcccccCccccCChhhHHHHHhHhcCCC
Q psy14244         68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (226)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (226)
                      .+.|-.|++|+.......+|++|+..-+-.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567889999999999999999987744333

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.037  Score=31.54  Aligned_cols=41  Identities=22%  Similarity=0.550  Sum_probs=23.6

Q ss_pred             CCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCccccc
Q psy14244         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (226)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (226)
                      +....|.|+.|++.|.....+..   .-.....|.|..|+....
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~el~   50 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCBCE
T ss_pred             ccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCEEe
Confidence            33456777777777766544321   223334577777775543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.077  Score=30.16  Aligned_cols=40  Identities=20%  Similarity=0.439  Sum_probs=28.5

Q ss_pred             hcCCCccccCccccccCChhHHhhccCCCCCCCCcccccCccc
Q psy14244         38 SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKS   80 (226)
Q Consensus        38 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   80 (226)
                      ..+...|+|+.|++.|.....+..   .-.....|.|..|+..
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             cccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            445667999999999987665554   2233457999999854

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.80  E-value=0.029  Score=29.48  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             CCCCccCCcchhhhcChhhhhccCCCCCCCC
Q psy14244        138 FPKPYQCDRCSQFFGDRMNLISHQCGPEDIK  168 (226)
Q Consensus       138 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  168 (226)
                      .+.|-.|++|+.....+.+|++|+..-+-.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            4789999999999999999999975444333

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.051  Score=31.49  Aligned_cols=25  Identities=28%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             CCCccCCcchhhhcChhhhhccCCC
Q psy14244        139 PKPYQCDRCSQFFGDRMNLISHQCG  163 (226)
Q Consensus       139 ~k~~~C~~C~~~f~~~~~L~~H~~~  163 (226)
                      ..-|-|..|++.|.+...|..|+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3458899999999999999999875

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=0.36  Score=22.05  Aligned_cols=20  Identities=20%  Similarity=0.632  Sum_probs=11.3

Q ss_pred             cccccCccccCChhhHHHHH
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQ   91 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~   91 (226)
                      |.|..||+...+...+.-|+
T Consensus         3 ftc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEE
Confidence            45555555555555555553

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=86.01  E-value=0.12  Score=26.11  Aligned_cols=30  Identities=0%  Similarity=-0.117  Sum_probs=15.9

Q ss_pred             cccccCccccCChhhHHHHHhHhcCCCCccCCCCcccc
Q psy14244         72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF  109 (226)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f  109 (226)
                      +.|+.||..|        |+..........|..||..+
T Consensus         3 ~vc~~cG~~Y--------h~~~~pPk~~g~CD~cg~~L   32 (37)
T d2ak3a2           3 WIHPGSGRVY--------NIEFNPPKTMGIDDLTGEPL   32 (37)
T ss_dssp             EEETTTTEEE--------ETTTBCCSSTTBCTTTCCBC
T ss_pred             eeeCCcCChh--------hhccCCccccCCccCCCCcC
Confidence            3456666655        33334455556666666543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=0.22  Score=22.60  Aligned_cols=19  Identities=26%  Similarity=0.580  Sum_probs=14.7

Q ss_pred             cCccccCChhhHHHHHhHh
Q psy14244         76 TCEKSFTNSQNLNTHQLIH   94 (226)
Q Consensus        76 ~C~~~f~~~~~l~~H~~~h   94 (226)
                      -|++.|.+.+.++.|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3788888888888887665

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.89  E-value=0.23  Score=22.15  Aligned_cols=21  Identities=33%  Similarity=0.770  Sum_probs=16.6

Q ss_pred             ccCccccCChhhHHHHHhHhc
Q psy14244         75 DTCEKSFTNSQNLNTHQLIHS   95 (226)
Q Consensus        75 ~~C~~~f~~~~~l~~H~~~h~   95 (226)
                      ..|+++|.....|..|.-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            348888888888888877765

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.49  E-value=0.4  Score=28.13  Aligned_cols=37  Identities=24%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             HHhhccCCCCCCCCcccccCccccCChhhHHHHHhHhcCCCCccCCCCcccc
Q psy14244         58 SLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF  109 (226)
Q Consensus        58 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f  109 (226)
                      .|..|.......+.+.|..||.....               +-.|+.|+..|
T Consensus        38 ~lt~H~~~~k~~~~l~CH~Cg~~~~~---------------~~~C~~Cgs~F   74 (74)
T d2dkta1          38 TNEDHQLDRFKVKEVQCINCEKLQHA---------------QQTCEDCSTLF   74 (74)
T ss_dssp             HTSSSCCCSSSCCCEEESSSCCEECS---------------CSBCSSSCCBS
T ss_pred             cccccccccccCCEEEeccCCCcccC---------------CCcCCCCCCCC
Confidence            34445433334566788888765322               34577777655

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=84.32  E-value=0.46  Score=26.19  Aligned_cols=14  Identities=21%  Similarity=0.610  Sum_probs=10.8

Q ss_pred             CCccCCCCcccccc
Q psy14244         98 RPFKCTTCDKSFVN  111 (226)
Q Consensus        98 k~~~C~~C~~~f~~  111 (226)
                      +.|.|..||..|.-
T Consensus         3 kky~C~~CgyiYdp   16 (56)
T d1s24a_           3 LKWICITCGHIYDE   16 (56)
T ss_dssp             CEEEETTTTEEEET
T ss_pred             ccEECCCCCcEECc
Confidence            45889999888764

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=84.25  E-value=0.1  Score=27.54  Aligned_cols=9  Identities=22%  Similarity=0.756  Sum_probs=5.1

Q ss_pred             CcccccCcc
Q psy14244         71 PYKCDTCEK   79 (226)
Q Consensus        71 ~~~C~~C~~   79 (226)
                      .|.|++|+.
T Consensus        29 dw~CP~C~a   37 (45)
T d6rxna_          29 DWCCPVCGV   37 (45)
T ss_dssp             TCBCTTTCC
T ss_pred             CCCCcCCCC
Confidence            356666653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.72  E-value=0.41  Score=23.03  Aligned_cols=25  Identities=24%  Similarity=0.701  Sum_probs=18.3

Q ss_pred             CCCcccccCccccCChhhHHHHHhH
Q psy14244         69 PRPYKCDTCEKSFTNSQNLNTHQLI   93 (226)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~   93 (226)
                      +..|.|.+|.+.+...+++-+|.-+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHh
Confidence            4467888888888888888777544

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=0.31  Score=27.39  Aligned_cols=29  Identities=24%  Similarity=0.673  Sum_probs=25.1

Q ss_pred             CCCCcccccCccccCChhhHHHHHhHhcC
Q psy14244         68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (226)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (226)
                      +...|.|..|+-.|-+...|..|+..|..
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccH
Confidence            34579999999999999999999998864

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.29  E-value=0.31  Score=24.61  Aligned_cols=29  Identities=10%  Similarity=0.234  Sum_probs=15.3

Q ss_pred             ccccCccccCChhhHHHHHhHhcCCCCccCCCCcccc
Q psy14244         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF  109 (226)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f  109 (226)
                      .|+.||+.|        |+.......+-.|..|+..+
T Consensus         4 ~C~~cG~~Y--------h~~~~ppk~~g~CD~cg~~L   32 (38)
T d1akya2           4 IHPASGRSY--------HKIFNPPKEDMKDDVTGEAL   32 (38)
T ss_dssp             ECTTTCCEE--------ETTTBCCSSTTBCTTTCCBC
T ss_pred             CCcCccchh--------hhhccCcCcCCccCCCCCEe
Confidence            456666655        33333444555666666544

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.64  E-value=0.2  Score=24.81  Aligned_cols=13  Identities=23%  Similarity=0.603  Sum_probs=6.6

Q ss_pred             cCCCCccCCCCcc
Q psy14244         95 SGIRPFKCTTCDK  107 (226)
Q Consensus        95 ~~~k~~~C~~C~~  107 (226)
                      ....+-.|+.|+.
T Consensus        18 pPk~~g~CD~cG~   30 (35)
T d1zina2          18 PPAKPGVCDKCGG   30 (35)
T ss_dssp             CCSSTTBCTTTCC
T ss_pred             CCCCCCcCCCCCC
Confidence            3444455555554

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=80.61  E-value=0.13  Score=28.14  Aligned_cols=14  Identities=14%  Similarity=0.629  Sum_probs=8.0

Q ss_pred             ccccCccccccCCh
Q psy14244         43 VHKCEYCHKVFDQQ   56 (226)
Q Consensus        43 ~~~C~~C~~~f~~~   56 (226)
                      .|.|..||..+.-.
T Consensus         3 ky~C~~CgyiYd~~   16 (53)
T d1iroa_           3 KYTCTVCGYIYNPE   16 (53)
T ss_dssp             CEEETTTCCEECTT
T ss_pred             CeEcCCCCcEECcc
Confidence            45666666665543