Psyllid ID: psy14390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPCKR
Secondary Structure (PSIPRED)
cccccccHHHHHHcEEEEEccccEEcccccEEcccccHHHHHHHHHcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
HHcccccHHHHHccEEEEEccEEcEccccccEcccHHHHHHHHHHccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPCKR
Flexible Loop (DISEMBL)
mqtegstvqeardriwmMDIDGLLAKGRVEVVRGNGKYYSLIqelnlnrpaYLAWLVARLPCKR
Low Complexity Region (SEG)
MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPCKR
Disordered region (IsUnstruct)
************DRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLP***
Disordered Region (DISOPRED)
**********ARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPC**
Disordered Region (DISEMBL)
*********EARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPCKR
Disordered Region (DISPRO)
*********EARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPCKR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQELNLNRPAYLAWLVARLPCKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
347971359	629	AGAP004159-PB [Anopheles gambiae str. PE	0.609	0.062	0.666	2e-06
347971361	571	AGAP004159-PA [Anopheles gambiae str. PE	0.609	0.068	0.666	2e-06
170046750	622	malic enzyme [Culex quinquefasciatus] gi	0.609	0.062	0.641	6e-06
312379935	623	hypothetical protein AND_08082 [Anophele	0.609	0.062	0.641	6e-06
91093505	620	PREDICTED: similar to malic enzyme [Trib	0.625	0.064	0.609	1e-05
157114273	652	malic enzyme [Aedes aegypti] gi|10888362	0.609	0.059	0.615	2e-05
350403727	616	PREDICTED: NADP-dependent malic enzyme-l	0.468	0.048	0.7	0.0003
193676229	625	PREDICTED: NADP-dependent malic enzyme-l	0.625	0.064	0.536	0.0003
242011898	1184	NADP-dependent malic enzyme, putative [P	0.468	0.025	0.666	0.0004
380016241	630	PREDICTED: LOW QUALITY PROTEIN: NADP-dep	0.468	0.047	0.666	0.0004

>gi|347971359|ref|XP_003436731.1| AGAP004159-PB [Anopheles gambiae str. PEST] gi|333468634|gb|EGK97005.1| AGAP004159-PB [Anopheles gambiae str. PEST]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 29/39 (74%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
           MQ EG+ +QEARD+IWM DIDGLLAKGR E   G  K Y
Sbjct: 364 MQAEGTGLQEARDKIWMFDIDGLLAKGRPEGRLGGHKAY 402

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971361|ref|XP_313043.5| AGAP004159-PA [Anopheles gambiae str. PEST] gi|333468633|gb|EAA08510.5| AGAP004159-PA [Anopheles gambiae str. PEST]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 29/39 (74%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
           MQ EG+ +QEARD+IWM DIDGLLAKGR E   G  K Y
Sbjct: 306 MQAEGTGLQEARDKIWMFDIDGLLAKGRPEGRLGGHKAY 344

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046750|ref|XP_001850913.1| malic enzyme [Culex quinquefasciatus] gi|167869417|gb|EDS32800.1| malic enzyme [Culex quinquefasciatus]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 29/39 (74%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
           MQ EG T+QEARD+IW+ DIDGLLAKGR E   G  K +
Sbjct: 361 MQVEGLTLQEARDKIWLFDIDGLLAKGRPEGRLGGHKAF 399

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379935|gb|EFR26072.1| hypothetical protein AND_08082 [Anopheles darlingi]

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 29/39 (74%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
           MQ EG+++QEARD+IWM DIDGLLAK R E   G  K Y
Sbjct: 361 MQAEGASLQEARDKIWMFDIDGLLAKDRPEGRLGGHKAY 399

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093505|ref|XP_969151.1| PREDICTED: similar to malic enzyme [Tribolium castaneum] gi|270002678|gb|EEZ99125.1| hypothetical protein TcasGA2_TC005232 [Tribolium castaneum]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 32/41 (78%), Gaps = 1/41 (2%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVE-VVRGNGKYYS 40
           MQ EG +++EAR +IWMMDIDGLLAKGR E  + G+  YY+
Sbjct: 359 MQVEGLSLEEARGKIWMMDIDGLLAKGRPEGKLDGHKAYYA 399

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114273|ref|XP_001658019.1| malic enzyme [Aedes aegypti] gi|108883625|gb|EAT47850.1| AAEL001091-PA [Aedes aegypti]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 28/39 (71%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
           MQ EG  +QEARD+IW+ DIDGLLAKGR E   G  K +
Sbjct: 391 MQAEGCGLQEARDKIWLFDIDGLLAKGRPEGRLGGHKAF 429

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403727|ref|XP_003486883.1| PREDICTED: NADP-dependent malic enzyme-like [Bombus impatiens]

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 23/30 (76%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVE 30
           M+ +G T QEARD IWMMDIDGLL K R E
Sbjct: 358 MEADGCTEQEARDNIWMMDIDGLLVKNRPE 387

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193676229|ref|XP_001944267.1| PREDICTED: NADP-dependent malic enzyme-like [Acyrthosiphon pisum]

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVE-VVRGNGKYYS 40
           M TEG +++EAR +IWMMDIDGLL K R E  ++G+  +Y+
Sbjct: 359 MLTEGCSLEEARSKIWMMDIDGLLVKDRPEGNLQGDKAFYA 399

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011898|ref|XP_002426680.1| NADP-dependent malic enzyme, putative [Pediculus humanus corporis] gi|212510851|gb|EEB13942.1| NADP-dependent malic enzyme, putative [Pediculus humanus corporis]

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 26/30 (86%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVE 30
           M+TEG +++EAR +IWM+DIDGLLAK R E
Sbjct: 340 MRTEGLSIEEARKKIWMVDIDGLLAKDRPE 369

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016241|ref|XP_003692096.1| PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme-like [Apis florea]

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 23/30 (76%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVE 30
           M+ +G T Q+ARD IWMMDIDGLL K R E
Sbjct: 356 MEVDGCTTQQARDNIWMMDIDGLLVKDRPE 385

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
cd05312	279	cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma	7e-07
PRK13529	563	PRK13529, PRK13529, malate dehydrogenase; Provisio	1e-06
cd00762	254	cd00762, NAD_bind_malic_enz, NAD(P) binding domain	4e-06
pfam03949	255	pfam03949, Malic_M, Malic enzyme, NAD binding doma	6e-06
PLN03129	581	PLN03129, PLN03129, NADP-dependent malic enzyme; P	1e-04

>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1

 Score = 43.7 bits (104), Expect = 7e-07
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          M  EG + +EAR +IW++D  GLL K R
Sbjct: 48 MVREGLSEEEARKKIWLVDSKGLLTKDR 75

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279

>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional

 Score = 42.8 bits (102), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
           M  EG + +EAR R +M+D  GLL    
Sbjct: 318 MVREGLSEEEARKRFFMVDRQGLLTDDM 345

Length = 563

>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGRVE 30
             EG + +EA  RIW +D  GLL K R E
Sbjct: 48 XVKEGISKEEACKRIWXVDRKGLLVKNRKE 77

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain

 Score = 40.6 bits (96), Expect = 6e-06
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          M  EG + +EAR  IWM+D  GLL +GR
Sbjct: 48 MVREGLSEEEARKNIWMVDRKGLLTEGR 75

Length = 255

>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVE 30
            +  G + +EAR RIW++D  GL+ K R +
Sbjct: 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKD 374

Length = 581

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	99.33
KOG1257|consensus	582		99.28
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	99.22
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	99.18
PRK13529	563	malate dehydrogenase; Provisional	99.15
PTZ00317	559	NADP-dependent malic enzyme; Provisional	99.13
PLN03129	581	NADP-dependent malic enzyme; Provisional	99.0
PRK12861	764	malic enzyme; Reviewed	98.13
PRK12862	763	malic enzyme; Reviewed	98.04
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.99
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.02
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.65
PHA02091	72	hypothetical protein	84.27

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=99.33  E-value=4.4e-13  Score=95.61  Aligned_cols=43  Identities=35%  Similarity=0.611  Sum_probs=39.0

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQE   44 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~   44 (64)
                      |+++|+|++||++||||+|++|||+++|++ ++++|++||++..
T Consensus        48 ~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~-l~~~~~~~a~~~~   90 (255)
T PF03949_consen   48 MVREGLSEEEARKRIWLVDSKGLLTDDRED-LNPHKKPFARKTN   90 (255)
T ss_dssp             HHCTTS-HHHHHTTEEEEETTEEEBTTTSS-HSHHHHHHHBSSS
T ss_pred             HHHhcCCHHHHhccEEEEeccceEeccCcc-CChhhhhhhccCc
Confidence            567899999999999999999999999988 9999999999763

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>KOG1257|consensus

Probab=99.28  E-value=1.5e-12  Score=100.94  Aligned_cols=43  Identities=35%  Similarity=0.622  Sum_probs=39.8

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      |+++|+|+|||+++|||||++|||+++|+.+++++|++||+++
T Consensus       333 m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~  375 (582)
T KOG1257|consen  333 MVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDH  375 (582)
T ss_pred             HHHcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccC
Confidence            5678999999999999999999999999844999999999976

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=99.22  E-value=3.3e-12  Score=92.06  Aligned_cols=43  Identities=37%  Similarity=0.608  Sum_probs=39.7

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQE   44 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~   44 (64)
                      |+++|+|+|||+++|||+|++|||+++|++ ++++|++||++.+
T Consensus        48 ~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~-l~~~~~~~a~~~~   90 (279)
T cd05312          48 MVREGLSEEEARKKIWLVDSKGLLTKDRKD-LTPFKKPFARKDE   90 (279)
T ss_pred             HHHcCCChhhccCeEEEEcCCCeEeCCCCc-chHHHHHHHhhcC
Confidence            456799999999999999999999999998 9999999999754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=99.18  E-value=1.3e-11  Score=88.06  Aligned_cols=42  Identities=36%  Similarity=0.458  Sum_probs=38.6

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhc---ccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKY---YSLIQ   43 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~---FAr~~   43 (64)
                      |+++|+|+|||++|||++|++|||+++|++ ++++|++   |+++.
T Consensus        48 ~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~-l~~~~~~~~~~~~~~   92 (254)
T cd00762          48 XVKEGISKEEACKRIWXVDRKGLLVKNRKE-TCPNEYHLARFANPE   92 (254)
T ss_pred             HHhcCCCHHHHhccEEEECCCCeEeCCCCc-cCHHHHHHHHHcCcc
Confidence            356799999999999999999999999998 9999999   88874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK13529 malate dehydrogenase; Provisional

Probab=99.15  E-value=1.3e-11  Score=95.73  Aligned_cols=42  Identities=33%  Similarity=0.465  Sum_probs=39.4

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      |+++|+|+|||+++|||+|++|||+++|++ |+++|++||++.
T Consensus       318 ~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~  359 (563)
T PRK13529        318 MVREGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKR  359 (563)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCc-chHHHHHHhhhc
Confidence            456899999999999999999999999998 999999999975

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=99.13  E-value=1.9e-11  Score=94.82  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=39.3

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      |+++|+|+|||++||||+|++|||+++|.++++++|++||++.
T Consensus       320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~  362 (559)
T PTZ00317        320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTD  362 (559)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccc
Confidence            4568999999999999999999999999755999999999974

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=99.00  E-value=1.3e-10  Score=90.50  Aligned_cols=40  Identities=33%  Similarity=0.572  Sum_probs=37.4

Q ss_pred             CCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          4 EGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         4 ~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      +|+|+|||++||||+|++|||+++|+++++++|++||++.
T Consensus       348 ~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~  387 (581)
T PLN03129        348 TGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDH  387 (581)
T ss_pred             cCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhc
Confidence            5999999999999999999999999765999999999974

>PRK12861 malic enzyme; Reviewed

Probab=98.13  E-value=1.1e-06  Score=70.58  Aligned_cols=39  Identities=23%  Similarity=0.555  Sum_probs=33.8

Q ss_pred             ccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccccccc
Q psy14390          2 QTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQE   44 (64)
Q Consensus         2 ~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~   44 (64)
                      +..|++++    ||||+|++|||+++|++.++++|++||++.+
T Consensus       209 ~~~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~  247 (764)
T PRK12861        209 VDLGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD  247 (764)
T ss_pred             HHcCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC
Confidence            45688865    9999999999999997658999999999864

>PRK12862 malic enzyme; Reviewed

Probab=98.04  E-value=1.9e-06  Score=68.93  Aligned_cols=38  Identities=26%  Similarity=0.531  Sum_probs=33.1

Q ss_pred             cCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccccccc
Q psy14390          3 TEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQE   44 (64)
Q Consensus         3 ~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~   44 (64)
                      ..|+++    +||||+|++|||+++|++.++++|++||++.+
T Consensus       214 ~~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~  251 (763)
T PRK12862        214 SLGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD  251 (763)
T ss_pred             HcCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc
Confidence            468774    89999999999999997559999999999754

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.99  E-value=2.8e-06  Score=68.10  Aligned_cols=39  Identities=23%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             cCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccccc
Q psy14390          3 TEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQEL   45 (64)
Q Consensus         3 ~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~~   45 (64)
                      ..|++    ++||||+|++|||+++|+++++++|++||++.+.
T Consensus       206 ~~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~  244 (752)
T PRK07232        206 ALGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDA  244 (752)
T ss_pred             HcCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCCC
Confidence            45777    6899999999999999954499999999997543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.02  E-value=0.0002  Score=49.42  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          3 TEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         3 ~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      ..|++    +++||++|++||++.+|.++|.++|++|+++.
T Consensus        46 ~~G~~----~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~   82 (226)
T cd05311          46 AAGAK----PENIVVVDSKGVIYEGREDDLNPDKNEIAKET   82 (226)
T ss_pred             HcCcC----cceEEEEeCCCccccccchhhhHHHHHHHHHh
Confidence            34666    67999999999999998655899999998864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.65  E-value=0.00066  Score=52.08  Aligned_cols=33  Identities=33%  Similarity=0.575  Sum_probs=24.5

Q ss_pred             cCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccc
Q psy14390          3 TEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYS   40 (64)
Q Consensus         3 ~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FA   40 (64)
                      ..|+.+    +||||+|++|+|+++|++ +...|..|+
T Consensus       220 ~~g~~~----~~i~~~D~~G~l~~~r~~-~~~~~~k~~  252 (432)
T COG0281         220 AAGVKE----ENIFVVDRKGLLYDGRED-LTMNQKKYA  252 (432)
T ss_pred             HhCCCc----ccEEEEecCCcccCCCcc-cccchHHHH
Confidence            345554    899999999999999987 544444443

>PHA02091 hypothetical protein

Probab=84.27  E-value=0.3  Score=29.26  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=26.6

Q ss_pred             ceeEEecCCceecCCCCCCChhh-----hccccccccccc
Q psy14390         14 RIWMMDIDGLLAKGRVEVVRGNG-----KYYSLIQELNLN   48 (64)
Q Consensus        14 rI~lvDr~GLlt~~R~d~L~~~q-----~~FAr~~~~~~~   48 (64)
                      +|-++|.+|.|...|.+ ..+++     ..||+-+++-++
T Consensus         2 ~irlid~kgfid~~r~~-~~~y~larsiv~fak~r~l~ii   40 (72)
T PHA02091          2 KIRLIDEKGFIDHCRKN-IVDYKLARSIVDFAKTRELQII   40 (72)
T ss_pred             ceEEeccccchhhhhhh-hHHHHHHHHHHHHHhhheEEEE
Confidence            57899999999999987 55555     678887776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
1llq_A	605	Crystal Structure Of Malic Enzyme From Ascaris Suum		5e-04

>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEV 31
           MQ EG + +EA +RI++MDIDGL+ K R E+
Sbjct: 343 MQNEGISKEEACNRIYLMDIDGLVTKNRKEM 373

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	2e-06
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	2e-06
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	1e-05

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
           M   G + QEA+ +IWM D  GLL KGR   +    + +
Sbjct: 307 MVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF 345

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
           MQ EG + +EA  RIWM+D  GL+ KGR
Sbjct: 305 MQKEGVSKEEAIKRIWMVDSKGLIVKGR 332

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 1   MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
           MQ EG + +EA +RI++MDIDGL+ K R
Sbjct: 343 MQNEGISKEEACNRIYLMDIDGLVTKNR 370

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	99.11
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	99.1
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	99.1
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.64
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.34
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.77

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=99.11  E-value=2e-11  Score=93.52  Aligned_cols=43  Identities=37%  Similarity=0.628  Sum_probs=39.4

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQE   44 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~   44 (64)
                      |+++|+|+|||+++|||+|++|||+++|++ |+++|++||++.+
T Consensus       305 ~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~-l~~~k~~~A~~~~  347 (555)
T 1gq2_A          305 MQKEGVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEHC  347 (555)
T ss_dssp             HHHHTCCHHHHHTTEEEEETTEECBTTCSS-CCTTGGGGCBSCC
T ss_pred             HHHcCCChHHHhCcEEEEECCCeeeCCCCC-chHHHHHHHhhcC
Confidence            345799999999999999999999999987 9999999999763

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=99.10  E-value=3e-11  Score=93.31  Aligned_cols=43  Identities=40%  Similarity=0.578  Sum_probs=39.7

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhccccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQE   44 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~~   44 (64)
                      |+++|+|+|||+++|||+|++|||+++|++ |+++|++||++.+
T Consensus       343 m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~-l~~~k~~~A~~~~  385 (605)
T 1o0s_A          343 MQNEGISKEEACNRIYLMDIDGLVTKNRKE-MNPRHVQFAKDMP  385 (605)
T ss_dssp             HHTTTCCHHHHHHTEEEEETTEECBTTCSS-CCGGGTTTCBSSC
T ss_pred             HHHcCCChhhhhCeEEEEECCCceeCCCCC-chHHHHHHHhhcC
Confidence            456899999999999999999999999987 9999999999763

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=99.10  E-value=2.7e-11  Score=92.94  Aligned_cols=43  Identities=35%  Similarity=0.594  Sum_probs=39.4

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCC-CCCCChhhhccccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGR-VEVVRGNGKYYSLIQE   44 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R-~d~L~~~q~~FAr~~~   44 (64)
                      |+++|+|+|||++||||+|++|||+++| ++ |+++|++||++.+
T Consensus       307 m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~-l~~~k~~~A~~~~  350 (564)
T 1pj3_A          307 MVENGLSEQEAQKKIWMFDKYGLLVKGRKAK-IDSYQEPFTHSAP  350 (564)
T ss_dssp             HHHTTCCHHHHHHTEEEEETTEECBTTCSSC-CCTTTGGGCBCCC
T ss_pred             HHHcCCChHHhhCcEEEEeCCCeEECCCccc-chHHHHHHHHhcC
Confidence            4568999999999999999999999999 66 9999999999764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.64  E-value=4.5e-06  Score=63.42  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             cCCCCHHHHhcceeEEecCCceecCCCCCCCh-----hhhcccccc
Q psy14390          3 TEGSTVQEARDRIWMMDIDGLLAKGRVEVVRG-----NGKYYSLIQ   43 (64)
Q Consensus         3 ~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~-----~q~~FAr~~   43 (64)
                      ..|+|+    ++|||+|++|||+++|++ +++     +|.+||+..
T Consensus       240 ~~G~~~----~~i~l~D~~Gli~~~R~~-l~~~~~~~~k~~~A~~~  280 (487)
T 3nv9_A          240 TAGADP----KKIVMFDSKGSLHNGRED-IKKDTRFYRKWEICETT  280 (487)
T ss_dssp             HTTCCG----GGEEEEETTEECCTTCHH-HHHCGGGHHHHHHHHHS
T ss_pred             HcCCCc----ccEEEEeccccccCCcch-hhhhcccHHHHHHHHhc
Confidence            568886    999999999999999987 744     556777754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.34  E-value=4.7e-05  Score=56.40  Aligned_cols=31  Identities=6%  Similarity=0.160  Sum_probs=25.3

Q ss_pred             cceeEEecCCceecCC-CCCCChhhhccccccc
Q psy14390         13 DRIWMMDIDGLLAKGR-VEVVRGNGKYYSLIQE   44 (64)
Q Consensus        13 krI~lvDr~GLlt~~R-~d~L~~~q~~FAr~~~   44 (64)
                      ++|||+|++|||+++| ++ |+++|++||+...
T Consensus       213 ~~I~v~D~~Gli~~~R~~~-L~~~k~~fa~~~~  244 (398)
T 2a9f_A          213 TKVTVVDKFGIINEQEAAQ-LAPHHLDIAKVTN  244 (398)
T ss_dssp             CEEEEEETTEECCTTCCCS-CCC---CHHHHHS
T ss_pred             CeEEEEECCCcccCCcccc-chHHHHHHhhccC
Confidence            7999999999999999 76 9999999999643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.77  E-value=0.00034  Score=51.58  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=28.8

Q ss_pred             hcceeEEecCCceecCCCCC-CChhhhccccccc
Q psy14390         12 RDRIWMMDIDGLLAKGRVEV-VRGNGKYYSLIQE   44 (64)
Q Consensus        12 rkrI~lvDr~GLlt~~R~d~-L~~~q~~FAr~~~   44 (64)
                      .++||++|++|||+.+|.+. |+++|+.||+...
T Consensus       216 ~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~  249 (388)
T 1vl6_A          216 VKNVVAVDRKGILNENDPETCLNEYHLEIARITN  249 (388)
T ss_dssp             CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC
T ss_pred             CCeEEEEECCCcccCCCcccccCHHHHHHHHhhh
Confidence            37999999999999999743 8999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1o0sa1	308	c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent	1e-04
d1gq2a1	298	c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent	0.003
d1pj3a1	294	c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent	0.003

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          MQ EG + +EA +RI++MDIDGL+ K R
Sbjct: 48 MQNEGISKEEACNRIYLMDIDGLVTKNR 75

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

 Score = 31.9 bits (72), Expect = 0.003
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          MQ EG + +EA  RIWM+D  GL+ KGR
Sbjct: 48 MQKEGVSKEEAIKRIWMVDSKGLIVKGR 75

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.5 bits (71), Expect = 0.003
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          M   G + QEA+ +IWM D  GLL KGR
Sbjct: 48 MVENGLSEQEAQKKIWMFDKYGLLVKGR 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	99.14
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	99.08
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	99.05
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	98.0

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=99.14  E-value=8.9e-12  Score=88.11  Aligned_cols=42  Identities=40%  Similarity=0.596  Sum_probs=39.2

Q ss_pred             CccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         1 m~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      |+.+|+|+++|++||||+|++|||+++|++ ++++|++||++.
T Consensus        48 ~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d-~~~~k~~~a~~~   89 (308)
T d1o0sa1          48 MQNEGISKEEACNRIYLMDIDGLVTKNRKE-MNPRHVQFAKDM   89 (308)
T ss_dssp             HHTTTCCHHHHHHTEEEEETTEECBTTCSS-CCGGGTTTCBSS
T ss_pred             HHhcCCchhhhhceEEEEeCCCCccCCCcc-cCHHHHHHHHhc
Confidence            356899999999999999999999999998 999999999975

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=99.08  E-value=1.6e-11  Score=86.34  Aligned_cols=41  Identities=37%  Similarity=0.648  Sum_probs=38.4

Q ss_pred             ccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          2 QTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         2 ~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      +++|+|+++|+++|||+|++|||+++|++ ++++|++|+++.
T Consensus        49 ~~~G~~~~~a~~~i~l~D~kGlv~~~R~~-l~~~k~~~a~~~   89 (298)
T d1gq2a1          49 QKEGVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEH   89 (298)
T ss_dssp             HHHTCCHHHHHTTEEEEETTEECBTTCSS-CCTTGGGGCBSC
T ss_pred             HHcCCChhhccceEEEEeCCCcccCCCcc-cCHHHHHHHHHh
Confidence            46799999999999999999999999998 999999999875

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.9e-11  Score=84.86  Aligned_cols=42  Identities=33%  Similarity=0.541  Sum_probs=38.4

Q ss_pred             ccCCCCHHHHhcceeEEecCCceecCCCCCCChhhhcccccc
Q psy14390          2 QTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYYSLIQ   43 (64)
Q Consensus         2 ~~~Gls~eeArkrI~lvDr~GLlt~~R~d~L~~~q~~FAr~~   43 (64)
                      +++|+++++|++||||+|++|||+++|++.++++|++|+++.
T Consensus        49 ~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~   90 (294)
T d1pj3a1          49 VENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSA   90 (294)
T ss_dssp             HHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCC
T ss_pred             HhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccc
Confidence            467999999999999999999999999766899999999964

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=6.9e-07  Score=60.04  Aligned_cols=37  Identities=11%  Similarity=0.080  Sum_probs=31.9

Q ss_pred             HHHhcceeEEecCCceecCCC-CCCChhhhcccccccc
Q psy14390          9 QEARDRIWMMDIDGLLAKGRV-EVVRGNGKYYSLIQEL   45 (64)
Q Consensus         9 eeArkrI~lvDr~GLlt~~R~-d~L~~~q~~FAr~~~~   45 (64)
                      ++|+++||++|++|||+++|+ ..++++|++|++..+.
T Consensus        47 ~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~   84 (222)
T d1vl6a1          47 DLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP   84 (222)
T ss_dssp             HHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT
T ss_pred             HhcccceEeecceeEEEcCcccccccHHHHHHHhhhcc
Confidence            689999999999999999985 2489999999987543