Psyllid ID: psy14532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKGNP
Secondary Structure (PSIPRED)
cccEEEEcccEEEEEccccEEEEEEEccccccEEEEEEccEEcccccccccccccccEEEcccccccEEEcccccEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEccccEEEEccccEEEEccccEEccccEEEEEccEEccccccEEEcccccEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEccccccEEcccccEEEEEEEcccccccEEEEEEccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccEEEEcccEEEEEEEcccccccEEEEEEcccEcccccccccEcccccccccccccccEEEccccEEEEEEEEEcccccEEEEEEEEcccEEEEcEEEEEEccccEEEccccEEEEcccEEEEEEccccccccEEEEEEcccEccccccEEEccccEEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEEcccEEEEccccEEEEcccEEEEEEEccccccccEEEEEEcccEccccccEEEEccc
Coil and Loop (DISEMBL)
SHPQLIYKFIQqtlqpgppvslkciatgnptphiswkldgyplagdrhenknrigearvqqlplnrrqkvfpngtlLIENVqkdhdrgvywctatnkqgrsssqnvhisvtgapfvrpmgnvsaiageplylgcpvagypiesitwqkgvqqlplnrrqkvfpngtlLIENVqkdhdrgvywctatnkqgrsssqnvhisvtvppkiapfefqpdlhsgdragvqclvtkgdppltiswlknglpilsamgvgrkgnp
Flexible Loop (DISEMBL)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIgearvqqlplnrrqkvfpngTLLIenvqkdhdrGVYWCTatnkqgrsssqnvHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIenvqkdhdrGVYWCTAtnkqgrsssqnvHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLknglpilsamgvgrkgnp
Low Complexity Region (SEG)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKGNP
Disordered region (IsUnstruct)
****LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG****************LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN*********VHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN*********VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM********
Disordered Region (DISOPRED)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG***************
Disordered Region (DISEMBL)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN**********HISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN*********VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKGNP
Disordered Region (DISPRO)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKGNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.903	0.112	0.452	9e-54
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.910	0.116	0.404	5e-42
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.910	0.116	0.404	5e-42
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.914	0.117	0.402	5e-42
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.903	0.113	0.391	2e-39
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.903	0.113	0.391	2e-39
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.825	0.041	0.334	4e-23
Q3UQ28	1475	Peroxidasin homolog OS=Mu	no	N/A	0.813	0.142	0.310	3e-20
Q92626	1479	Peroxidasin homolog OS=Ho	no	N/A	0.813	0.141	0.310	2e-19
A4IGL7	1457	Peroxidasin OS=Xenopus tr	no	N/A	0.817	0.144	0.314	4e-18

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  210 bits (534), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 154/254 (60%), Gaps = 21/254 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P L+Y FI+QTLQPGP VSLKC A GNPTP ISW LDG+PL  +    +  IG       
Sbjct: 423 PVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSN---GRFMIG------- 472

Query: 63  PLNRRQKVFPNGTLLIENVQKDH----DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
                Q +  +G + I +V   H    D G Y C A N+ GR       +++ G P++R 
Sbjct: 473 -----QYITVHGDV-ISHVNISHVMVEDGGEYACIAENRAGRVQ-HAARLNIYGLPYIRL 525

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
           +  V+A++GE L L CPVAGYPIE I W++G ++LP + RQ+V P+G+L I  VQK+ D 
Sbjct: 526 IPKVTAVSGETLNLKCPVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDS 585

Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTIS 238
           GVY C A NKQG S+ ++  ++V VPP I PF FQ  L  G R    C V++GDPPL + 
Sbjct: 586 GVYTCWARNKQGHSARRSGEVTVIVPPSIEPFAFQEGLAEGMRTRTVCGVSRGDPPLKLI 645

Query: 239 WLKNGLPILSAMGV 252
           WLK+G P+   +G 
Sbjct: 646 WLKDGDPLPDLLGA 659

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 136/252 (53%), Gaps = 17/252 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
           P++I  F ++ + P  PVSL C   G P P ++W LD  P L G  H         R+ Q
Sbjct: 407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGH---------RISQ 457

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
           +  +    V    + L  +  +  D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct: 458 MITSEGNVV----SYLNISSSQVRDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 512

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGV 180
           ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F  NGTL + +VQK+ D G 
Sbjct: 513 ITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 572

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
           Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct: 573 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 631

Query: 241 KNGLPILSAMGV 252
           K+G PI +++GV
Sbjct: 632 KDGRPIPASLGV 643

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 136/252 (53%), Gaps = 17/252 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
           P++I  F ++ + P  PVSL C   G P P ++W LD  P L G  H         R+ Q
Sbjct: 407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGH---------RISQ 457

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
           +  +    V    + L  +  +  D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct: 458 MITSEGNVV----SYLNISSSQVRDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 512

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGV 180
           ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F  NGTL + +VQK+ D G 
Sbjct: 513 ITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 572

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
           Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct: 573 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 631

Query: 241 KNGLPILSAMGV 252
           K+G PI +++GV
Sbjct: 632 KDGRPIPASLGV 643

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/251 (40%), Positives = 135/251 (53%), Gaps = 15/251 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I  F ++ + P  PVSL C   G P P I+W LD  P+         + G  R+ Q+
Sbjct: 407 PKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPIL--------KGGSHRISQM 458

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
             +    V    + L  +  +  D GVY CTA N  G    Q   I+V G   +RPM N+
Sbjct: 459 ITSEGNVV----SYLNISSSQVRDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKNI 513

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVY 181
           +AIAG   Y+ C V GYP  SI W K    LP N RQ  F  NGTL + +VQK+ D G Y
Sbjct: 514 TAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEY 573

Query: 182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK 241
            C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W K
Sbjct: 574 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQK 632

Query: 242 NGLPILSAMGV 252
           +G PI  ++GV
Sbjct: 633 DGRPIPGSLGV 643

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/253 (39%), Positives = 134/253 (52%), Gaps = 20/253 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++  F ++ + PG   SL C A G P P ++W LD  P+  D        G  R  Q 
Sbjct: 408 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPVVRD--------GSHRTNQY 459

Query: 63  PLNRRQKVFPNGTLLIE-NVQ--KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
            ++       +GT +   NV   +  D GVY CTA N  G +  Q   I+V G P +R M
Sbjct: 460 TMS-------DGTTISHMNVTGPQIRDGGVYRCTARNSVGSAEYQ-ARINVRGPPSIRAM 511

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
            N++A+AG    + C V GYP  SI W K    LP N RQ VF NGTL + +VQK  D G
Sbjct: 512 RNITAVAGRDTLINCRVIGYPYYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEG 571

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
            Y C+   +   S SQ+VH++V VPP I PFEF P    G    + C+V+ GD P+ I+W
Sbjct: 572 EYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPP-ASIGQLLYIPCVVSSGDMPIRITW 630

Query: 240 LKNGLPILSAMGV 252
            K+G  I+S  GV
Sbjct: 631 RKDGQVIISGSGV 643

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/253 (39%), Positives = 134/253 (52%), Gaps = 20/253 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++  F ++ + PG   SL C A G P P ++W LD  P+  D        G  R  Q 
Sbjct: 408 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPIVRD--------GSHRTNQY 459

Query: 63  PLNRRQKVFPNGTLLIE-NVQ--KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
            ++       +GT +   NV   +  D GVY CTA N  G +  Q   I+V G P +R M
Sbjct: 460 TMS-------DGTTISHMNVTGPQIRDGGVYRCTARNLVGSAEYQ-ARINVRGPPSIRAM 511

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
            N++A+AG    + C V GYP  SI W K    LP N RQ VF NGTL + +VQK  D G
Sbjct: 512 RNITAVAGRDTLINCRVIGYPYYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEG 571

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
            Y C+   +   S SQ+VH++V VPP I PFEF P    G    + C+V+ GD P+ I+W
Sbjct: 572 EYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPP-ASIGQLLYIPCVVSSGDMPIRITW 630

Query: 240 LKNGLPILSAMGV 252
            K+G  I+S  GV
Sbjct: 631 RKDGQVIISGSGV 643

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 38/251 (15%)

Query: 17   GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
            G P SL CIA+G PTP I+W  +   L    H + +R                   NGTL
Sbjct: 987  GVPASLPCIASGVPTPKITWTKETNALTTSGHYSVSR-------------------NGTL 1027

Query: 77   LIENVQKD-HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN--------VSAIAG 127
            +I  VQ    D G Y CTATN  G  SSQ + +SV   P ++  G+        V+  AG
Sbjct: 1028 VI--VQPSPQDAGAYVCTATNSVG-FSSQEMWLSVNTKPMIKMNGSQAVDVPLRVTVKAG 1084

Query: 128  EPLYLGCPVAGYPIESITWQKGVQ-QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
            E + L C   G P   +TW K     LP+  R ++ P+G+L +   Q   D G+Y CTA+
Sbjct: 1085 EEVTLDCEAQGSPTPLLTWTKDANPLLPVTNRYELLPSGSLRLAQAQVG-DNGLYGCTAS 1143

Query: 187  NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
            N  G +S + V + V VPP++ P      + +G+   + C V +G+P   ++W K+G+ +
Sbjct: 1144 NPAGATSRRYV-LRVQVPPQVQPGPRVLKVLAGEALDLNC-VAEGNPQPQLNWFKDGMAL 1201

Query: 247  LSAMGVGRKGN 257
               MG G +G+
Sbjct: 1202 ---MGEGAQGS 1209

Mus musculus (taxid: 10090)

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 38/248 (15%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V   C A GNP P I W             N N +       +  + R  +  +GTL
Sbjct: 257 GNTVYFTCRAEGNPKPEIIWL-----------RNNNELS------MKTDSRLNLLDDGTL 299

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMGNVSAIAGEPLYL 132
           +I+N Q + D GVY C A N  G + +Q V +   G+P    FV    N   + GE + L
Sbjct: 300 MIQNTQ-EADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEVLVGESVTL 358

Query: 133 GCPVAGYPIESITWQKGVQQ-LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191
            C   G+P+  ITW +G +  LP++ R  + P+G L I+NV +  D G Y C A+N    
Sbjct: 359 ECSATGHPLPQITWTRGDRTPLPIDPRVNITPSGGLYIQNVAQS-DSGEYTCFASN---- 413

Query: 192 SSSQNVHISVTVPPKIAP-FEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 247
            S  ++H +  +  +  P F   P    +  G     QC   KG P   I+W K G    
Sbjct: 414 -SVDSIHATAFIIVQALPQFTVTPQSRVVIEGQTVDFQC-AAKGHPQPVIAWTKGG---- 467

Query: 248 SAMGVGRK 255
           S + V R+
Sbjct: 468 SQLSVDRR 475

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 113/248 (45%), Gaps = 38/248 (15%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V   C A GNP P I W             N N +       +  + R  +  +GTL
Sbjct: 260 GNTVYFTCRAEGNPKPEIIWL-----------RNNNELS------MKTDSRLNLLDDGTL 302

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMGNVSAIAGEPLYL 132
           +I+N Q+  D+G+Y C A N  G   +Q V +   G+P    FV    N   + GE + L
Sbjct: 303 MIQNTQET-DQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVGESVTL 361

Query: 133 GCPVAGYPIESITWQKGVQQ-LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191
            C   G+P   I+W +G +  LP++ R  + P+G L I+NV +  D G Y C+ATN    
Sbjct: 362 ECSATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQG-DSGEYACSATN---- 416

Query: 192 SSSQNVHISVTVPPKIAP-FEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 247
            +  +VH +  +  +  P F   P    +  G     QC   KG+PP  I+W K G    
Sbjct: 417 -NIDSVHATAFIIVQALPQFTVTPQDRVVIEGQTVDFQC-EAKGNPPPVIAWTKGG---- 470

Query: 248 SAMGVGRK 255
           S + V R+
Sbjct: 471 SQLSVDRR 478

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A4IGL7|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 106/235 (45%), Gaps = 24/235 (10%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V+L+C ATG P P ++W        GDR              LP + R  + P+G L
Sbjct: 346 GESVTLECSATGQPHPRVTWT------RGDR------------TPLPSDPRINITPSGGL 387

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCP 135
            I+NV +D D G Y C ATN      S   +I V   P F     + +   G  +   C 
Sbjct: 388 YIQNVNQD-DAGEYTCFATNSVETIHS-TAYIIVQAVPQFTVVPQDRNVFEGHTVDFHCE 445

Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSS 194
             G P   I W KG  QL ++RR +V  +GTL I  V   HD+G Y C A N  G +S++
Sbjct: 446 AQGNPKPVIAWTKGGNQLSVDRRHQVLSSGTLRILRVAL-HDQGQYECQAVNIVGSKSTA 504

Query: 195 QNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
             + +   V P  A       +  G    + C  ++GDP   I+W K+G+ +  +
Sbjct: 505 AQLIVQTRVTPVFATVPNDMTVEVGTDVQIPC-SSQGDPLPIITWNKDGIQVTES 558

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
380026479	1155	PREDICTED: Down syndrome cell adhesion m	0.903	0.201	0.504	2e-63
328788851	2004	PREDICTED: Down syndrome cell adhesion m	0.903	0.116	0.504	4e-63
350427341	1969	PREDICTED: Down syndrome cell adhesion m	0.903	0.118	0.504	6e-63
340710812	1969	PREDICTED: Down syndrome cell adhesion m	0.903	0.118	0.504	8e-63
383853528	1974	PREDICTED: Down syndrome cell adhesion m	0.883	0.115	0.502	1e-61
307203269	1397	Down syndrome cell adhesion molecule [Ha	0.883	0.163	0.489	6e-60
242023455	1538	Down syndrome cell adhesion molecule pre	0.875	0.146	0.504	8e-60
242004281	1849	Down syndrome cell adhesion molecule pre	0.903	0.126	0.504	1e-59
307186062	2191	Down syndrome cell adhesion molecule [Ca	0.875	0.103	0.5	2e-58
332024824	1968	Down syndrome cell adhesion molecule-lik	0.875	0.114	0.483	2e-58

>gi|380026479|ref|XP_003696979.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Apis florea]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 13/246 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL  +   ++  IG+      
Sbjct: 9   PQLLYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQN---DRFMIGQY----- 60

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            +     V  +  + + +V+   D G Y CTA N+  +    +  +++ G P VRPMGN 
Sbjct: 61  -VTVHGDVISHVNISVVHVE---DGGEYRCTAANRMAKVH-HSARLNIYGLPHVRPMGNY 115

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
           +A+AGE   + CPVAG+PI SITW+K  + LP +RRQ+VFPNGTL++ +V +  D G Y 
Sbjct: 116 AAVAGETTVIKCPVAGFPIASITWEKDGKVLPTSRRQEVFPNGTLVLHHVDRSTDHGAYT 175

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
           CTA NKQGRS SQ VHI V VPPKI PF F  ++  G R  V C+V++GD PL I+WLK+
Sbjct: 176 CTAKNKQGRSDSQTVHIEVKVPPKIDPFSFPANIQEGARVHVVCVVSEGDSPLKITWLKD 235

Query: 243 GLPILS 248
           G P+ S
Sbjct: 236 GRPLNS 241

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788851|ref|XP_392224.4| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Apis mellifera]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 13/246 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL  +   ++  IG+      
Sbjct: 478 PQLLYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQN---DRFMIGQY----- 529

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            +     V  +  + + +V+   D G Y CTA N+  +    +  +++ G P VRPMGN 
Sbjct: 530 -VTVHGDVISHVNISVVHVE---DGGEYRCTAANRMAKVH-HSARLNIYGLPHVRPMGNY 584

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
           +A+AGE   + CPVAG+PI SITW+K  + LP +RRQ+VFPNGTL++ +V +  D G Y 
Sbjct: 585 AAVAGETTVIKCPVAGFPIASITWEKDGKVLPTSRRQEVFPNGTLVLHHVDRSTDHGAYT 644

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
           CTA NKQGRS SQ VHI V VPPKI PF F  ++  G R  V C+V++GD PL I+WLK+
Sbjct: 645 CTAKNKQGRSDSQTVHIEVKVPPKIDPFSFPANIQEGARVHVVCVVSEGDSPLKITWLKD 704

Query: 243 GLPILS 248
           G P+ S
Sbjct: 705 GRPLNS 710

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427341|ref|XP_003494727.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus impatiens]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 163/246 (66%), Gaps = 13/246 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL  +   ++  IG+      
Sbjct: 443 PQLLYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQN---DRFMIGQY----- 494

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            +     V  +  + + +V+   D G Y CTA N+  +    +  +++ G P VRPMGN 
Sbjct: 495 -VTVHGDVISHVNISVVHVE---DGGEYRCTAANRMAKVH-HSARLNIYGLPHVRPMGNY 549

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
            A+AGE   + CPVAG+PI SITW+K  + LP +RRQ+VFPNGTL++ +V +  D G Y 
Sbjct: 550 GAVAGETTVIKCPVAGFPIASITWEKDGKVLPTSRRQEVFPNGTLVLHHVDRSTDHGAYT 609

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
           CTA NKQGRS SQ VHI V VPPKI PF F  ++  G R  V C+V++GD PL I+WLK+
Sbjct: 610 CTAKNKQGRSDSQTVHIEVKVPPKIDPFSFPANIQEGARVHVVCVVSEGDSPLKITWLKD 669

Query: 243 GLPILS 248
           G P+ S
Sbjct: 670 GRPLNS 675

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710812|ref|XP_003393978.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus terrestris]

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 163/246 (66%), Gaps = 13/246 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL  +   ++  IG+      
Sbjct: 443 PQLLYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQN---DRFMIGQY----- 494

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            +     V  +  + + +V+   D G Y CTA N+  +    +  +++ G P VRPMGN 
Sbjct: 495 -VTVHGDVISHVNISVVHVE---DGGEYRCTAANRMAKVH-HSARLNIYGLPHVRPMGNY 549

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
            A+AGE   + CPVAG+PI SITW+K  + LP +RRQ+VFPNGTL++ +V +  D G Y 
Sbjct: 550 GAVAGETTVIKCPVAGFPIASITWEKDGKVLPTSRRQEVFPNGTLVLHHVDRSTDHGAYT 609

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
           CTA NKQGRS SQ VHI V VPPKI PF F  ++  G R  V C+V++GD PL I+WLK+
Sbjct: 610 CTAKNKQGRSDSQTVHIEVKVPPKIDPFSFPANIQEGARVHVVCVVSEGDSPLKITWLKD 669

Query: 243 GLPILS 248
           G P+ S
Sbjct: 670 GRPLNS 675

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853528|ref|XP_003702274.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Megachile rotundata]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/241 (50%), Positives = 161/241 (66%), Gaps = 13/241 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL  +   ++  IG+      
Sbjct: 450 PQLVYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQN---DRFMIGQY----- 501

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            +     V  +  + + +V+   D G Y CTA+N+  +    +  +++ G P VRPMGN 
Sbjct: 502 -VTVHGDVISHVNISVVHVE---DGGDYQCTASNRMAKVH-HSARLNIYGLPHVRPMGNY 556

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
           +A+AGE   + CPVAG+PI SITW+K  + LP +RRQ+VF NGTL + +V +  D+G Y 
Sbjct: 557 AAVAGETTVIKCPVAGFPIASITWEKDGKMLPTSRRQEVFANGTLRLHHVDRSTDQGAYT 616

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
           CTA NKQGRS SQ VHI V VPPKI PF F  ++  G R  V C+V++GD PL I+WLK+
Sbjct: 617 CTAKNKQGRSDSQTVHIDVKVPPKIDPFSFPANIQEGARIHVSCVVSEGDSPLRITWLKD 676

Query: 243 G 243
           G
Sbjct: 677 G 677

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203269|gb|EFN82424.1| Down syndrome cell adhesion molecule [Harpegnathos saltator]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 121/247 (48%), Positives = 156/247 (63%), Gaps = 19/247 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+YKFI+QT+QPGP VSLKCIA GNPTPH SW LDG+PL      ++  IG       
Sbjct: 138 PQLLYKFIEQTMQPGPSVSLKCIAMGNPTPHFSWTLDGFPLP---QNDRFMIG------- 187

Query: 63  PLNRRQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
                Q V  +G ++     +  +  D G Y C+A N+  R+      +++ G P VR M
Sbjct: 188 -----QYVTVHGDVISHVNISAVRVEDGGEYRCSAVNRVARAH-HAARLNIYGLPHVRAM 241

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
           GN +A+AGE   + CPVAG+PI SITW+K  Q LP +RRQ+V  NGTL++  V    DRG
Sbjct: 242 GNYAAVAGETTVIKCPVAGFPIASITWEKDGQILPTSRRQEVSQNGTLVLHRVDSSTDRG 301

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
            Y CTA NKQGRS SQ +HI V VPPKI PF F  ++ +G R  V C V++GD PL I+W
Sbjct: 302 AYTCTAKNKQGRSDSQTIHIEVKVPPKIDPFSFPANIQAGARVHVTCAVSEGDSPLKITW 361

Query: 240 LKNGLPI 246
           LK+G P+
Sbjct: 362 LKDGRPL 368

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023455|ref|XP_002432149.1| Down syndrome cell adhesion molecule precursor, putative [Pediculus humanus corporis] gi|212517531|gb|EEB19411.1| Down syndrome cell adhesion molecule precursor, putative [Pediculus humanus corporis]

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 163/248 (65%), Gaps = 22/248 (8%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           +PQL+YKFI+QT+QPGP VSLKC A+GNPTPHISW LDG+PL    H ++  IG+     
Sbjct: 226 YPQLLYKFIEQTMQPGPSVSLKCSASGNPTPHISWLLDGFPL---YHSDRLMIGQYVT-- 280

Query: 62  LPLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
                   VF +   ++ +V     K  D G Y C A N+ G++S  +  ++V G P+VR
Sbjct: 281 --------VFGD---VVSHVNISSIKTEDGGEYECVAENRAGKTS-HSARLNVYGLPYVR 328

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
            M ++SA+AG+ L + CPVAGYPI+S++W+K   QLP + RQ+V  N TL IENVQKD D
Sbjct: 329 TMPSISAVAGKILIIKCPVAGYPIDSVSWEKDGVQLPTSIRQRVI-NNTLSIENVQKDTD 387

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
           +G Y CTA NKQG SS + V + V VPPKI PF F  DL  GDR  VQC+V  GD PL+ 
Sbjct: 388 QGSYTCTAKNKQGHSSHKTVQVKVIVPPKITPFTFAHDLKLGDRISVQCVVVSGDLPLSF 447

Query: 238 SWLKNGLP 245
           +W K+G P
Sbjct: 448 TWRKDGEP 455

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004281|ref|XP_002423033.1| Down syndrome cell adhesion molecule precursor, putative [Pediculus humanus corporis] gi|212505964|gb|EEB10295.1| Down syndrome cell adhesion molecule precursor, putative [Pediculus humanus corporis]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 155/246 (63%), Gaps = 13/246 (5%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P LIYKFI+QT+QPGP VSLKCIATGNPTPH +W LDG+ L      ++  IG+    
Sbjct: 436 SSPHLIYKFIEQTMQPGPSVSLKCIATGNPTPHFTWVLDGFSLP---QNDRLVIGQY--- 489

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
              +     V  +  +   NV+   D G Y CTA N+ G S S +  +++ G P VRPM 
Sbjct: 490 ---VTVHGDVISHVNISSVNVE---DGGEYKCTAKNRVG-SVSHSARLNIYGLPMVRPMN 542

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
            ++A+AG  L L CPVAGYPI  I W+K  Q LP+NRRQ+V PNGTL+I  V    D G+
Sbjct: 543 TIAAVAGHDLILQCPVAGYPIAFIVWEKDGQLLPVNRRQEVSPNGTLVIRKVDNLSDGGL 602

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
           Y C A NKQG   S+ V I V VPP+IAPF F  DL  G RA + C+V KGDPP TI+WL
Sbjct: 603 YMCMAKNKQGHHDSKTVQIEVKVPPRIAPFSFNKDLSEGVRAHLSCVVEKGDPPFTITWL 662

Query: 241 KNGLPI 246
           K+  P+
Sbjct: 663 KDREPL 668

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186062|gb|EFN71794.1| Down syndrome cell adhesion molecule [Camponotus floridanus]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 158/248 (63%), Gaps = 22/248 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+Y+FI+QT+QPGP VSLKC A GNPTP ISW LDG+PL      +K  IG       
Sbjct: 452 PQLVYRFIEQTMQPGPSVSLKCSAAGNPTPQISWLLDGFPLP---QNDKLLIG------- 501

Query: 63  PLNRRQKVFPNGTLL----IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
                Q V   G ++    I +V K  D G Y C A ++ G +   +  +++ G P+VRP
Sbjct: 502 -----QYVTVYGDVISHVNITSV-KAEDGGEYECIAGSRAGEAR-HSARLNIYGLPYVRP 554

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
           M  VSA+AG+ LY+ CPVAGYPIESI W+KG  +LP N RQ+V  NGTL I+ VQ+  D 
Sbjct: 555 MSPVSAVAGKQLYIKCPVAGYPIESIVWEKGDVKLPTNMRQRV-ANGTLFIDTVQRSADE 613

Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTIS 238
           G Y CTA NK   +S ++V + V VPPKI PF F  DL+ GDR  VQC+V  GD PLT +
Sbjct: 614 GTYTCTARNKHNFTSHRSVEVRVLVPPKITPFSFARDLNVGDRTSVQCVVVTGDLPLTFT 673

Query: 239 WLKNGLPI 246
           WLK+ +PI
Sbjct: 674 WLKDNVPI 681

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024824|gb|EGI65012.1| Down syndrome cell adhesion molecule-like protein [Acromyrmex echinatior]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/248 (48%), Positives = 159/248 (64%), Gaps = 22/248 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL+Y+FI+QT+QPGP VSLKC A GNPTP ISW LDG+PL  +              +L
Sbjct: 397 PQLVYRFIEQTMQPGPSVSLKCSAAGNPTPQISWLLDGFPLPQN-------------DRL 443

Query: 63  PLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
            + +   V+ +   +I +V     K  D G Y C A+++ G  +  +  +++ G P+VRP
Sbjct: 444 LIGQYVTVYGD---VISHVNITTVKPEDGGEYECIASSRAG-DARHSARLNIYGLPYVRP 499

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
           M  VSA+AG+ LY+ CPVAGYPIESI W+KG  +LP N RQ+V  NGTL I+ VQ+  D 
Sbjct: 500 MSPVSAVAGKQLYIKCPVAGYPIESIVWEKGDIKLPTNMRQRV-ANGTLFIDTVQRSADE 558

Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTIS 238
           G Y CTA NK   +S ++V + V VPPKI PF F  DL+ GDR  VQC+V  GD PLT +
Sbjct: 559 GTYTCTARNKHNFTSHRSVEVRVLVPPKITPFSFARDLNVGDRTSVQCVVVTGDLPLTFT 618

Query: 239 WLKNGLPI 246
           WLK+ +PI
Sbjct: 619 WLKDNVPI 626

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.899	0.120	0.426	6.2e-49
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.910	0.115	0.405	3.6e-45
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.914	0.118	0.422	4.3e-42
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.941	0.118	0.359	1.7e-40
UNIPROTKB|F1SGT7	1656	F1SGT7 "Uncharacterized protei	0.910	0.141	0.416	2.7e-40
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.910	0.116	0.412	3.6e-40
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.910	0.116	0.412	3.6e-40
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.910	0.116	0.416	4.5e-40
UNIPROTKB|F1MKB9	1859	DSCAM "Uncharacterized protein	0.910	0.126	0.412	2.3e-39
UNIPROTKB|F1N4K6	1886	DSCAML1 "Uncharacterized prote	0.903	0.123	0.395	2.7e-38

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 525 (189.9 bits), Expect = 6.2e-49, P = 6.2e-49
 Identities = 105/246 (42%), Positives = 154/246 (62%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             P+L+Y F +QTLQPGP VSLKC+ATGNP P  +W LDG+P+      ++  +G    Q +
Sbjct:   422 PELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPIPDS---SRFLVG----QYV 474

Query:    63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
              ++    V  +  + I NV K+ D G Y CTA N  G+ S  +  +++ G P++R M  +
Sbjct:   475 TIH--DDVISH--VNISNV-KEEDGGEYTCTAQNAIGKVS-HSAKVNIYGLPYIREMPKI 528

Query:   123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
             + I+G  L + CPVAGYPI+ I W++  Q LP+NRRQ+ + NGTL+IE +Q+  D G Y 
Sbjct:   529 TGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQRLEDAGTYT 588

Query:   183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDPPLTISWLK 241
             C A NKQ ++S +NV I V VPPKI P +   + L  G RA + C + +GD P++  W +
Sbjct:   589 CMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRWER 648

Query:   242 NGLPIL 247
             NG P++
Sbjct:   649 NGKPLI 654

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 490 (177.5 bits), Expect = 3.6e-45, P = 3.6e-45
 Identities = 103/254 (40%), Positives = 153/254 (60%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRHENKNRIGEARVQQ 61
             P +   F ++T++PGP V LKC+A GNPTP ISW+LDG  +A  DR++    +G    Q 
Sbjct:   430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQ----VG----QY 481

Query:    62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
             + +N     + N T +  N     D G+Y C A +K G  +  +  ++V G P++R M  
Sbjct:   482 VTVNGDVVSYLNITSVHAN-----DGGLYKCIAKSKVG-VAEHSAKLNVYGLPYIRQMEK 535

Query:   122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 181
              + +AGE L + CPVAGYPI+SI W++  + LP+NR+QKVFPNGTL+IENV+++ D+  Y
Sbjct:   536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595

Query:   182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEF-QPDLHSGDRAGVQCLVTKGDPPLTISWL 240
              C A N++G S+  ++ + V VPP++ PF+F +  ++  D     C V KGD PL + W 
Sbjct:   596 TCVAKNQEGYSARGSLEVQVMVPPQVVPFDFGEETINMNDMVSATCTVNKGDTPLELYWT 655

Query:   241 KNGLPILSAMGVGR 254
                 P     GVGR
Sbjct:   656 TAPDP---TTGVGR 666

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 461 (167.3 bits), Expect = 4.3e-42, P = 4.3e-42
 Identities = 106/251 (42%), Positives = 137/251 (54%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             P++I  F ++ + PG PVSL C   G P P I+W LD  P+  D        G  R+ Q+
Sbjct:   393 PKIISAFSEKVVSPGEPVSLMCNVKGTPLPTITWTLDEDPIVKD--------GSHRISQI 444

Query:    63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
               +    V     L I N Q   D GVY CTA N  G    Q   I+V G   +RPM N+
Sbjct:   445 ITSEGNVV---SYLNISNTQV-RDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKNI 499

Query:   123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGVY 181
             +AIAG   Y+ C V GYP  SI W K    LP N RQ  F N GTL + +VQK+ D G Y
Sbjct:   500 TAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEY 559

Query:   182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK 241
              C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W K
Sbjct:   560 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQK 618

Query:   242 NGLPILSAMGV 252
             +G PI +++GV
Sbjct:   619 DGRPIPASLGV 629

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 446 (162.1 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 92/256 (35%), Positives = 147/256 (57%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             P+LIY FI+Q ++PGP +SLKC A+G+P P  +W LD  P+      ++  IG+      
Sbjct:   439 PELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQF----- 493

Query:    63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
              ++    V  +  L I +V+ D D G+Y C A+N  G S   +  ++V G P+VR +G +
Sbjct:   494 -VDMSGDVISH--LNISHVRPD-DGGLYKCVASNSMG-SVQHSARLNVYGPPYVRAIGPI 548

Query:   123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK---VFPNGTLLIENVQKDHDRG 179
              A+AGE + + CP AGYP+E I W+K  Q+L  +   +   V   G L+I+NV+   D+G
Sbjct:   549 KAVAGEDIIVHCPFAGYPVEQIRWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQG 608

Query:   180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
             +Y C   ++ G  + +++ ++V  PP I PF+F  +L  G RA + C V+ GD P+  SW
Sbjct:   609 IYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSW 668

Query:   240 LKNGLPILSAMGVGRK 255
              K+   I S++ +  K
Sbjct:   669 KKDDSSIPSSLQITEK 684

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

UNIPROTKB|F1SGT7 F1SGT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 443 (161.0 bits), Expect = 2.7e-40, P = 2.7e-40
 Identities = 105/252 (41%), Positives = 136/252 (53%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
             P++I  F ++ + P  PVSL C   G P P I+W LD  P L G  H         R+ Q
Sbjct:   159 PKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSH---------RISQ 209

Query:    62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
             +  +    V     L I + Q   D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct:   210 MITSEGNVV---SYLNISSSQV-RDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 264

Query:   122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGV 180
             ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F N GTL + +VQK+ D G 
Sbjct:   265 ITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 324

Query:   181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
             Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct:   325 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 383

Query:   241 KNGLPILSAMGV 252
             K+G PI +++GV
Sbjct:   384 KDGRPIPASLGV 395

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 443 (161.0 bits), Expect = 3.6e-40, P = 3.6e-40
 Identities = 104/252 (41%), Positives = 136/252 (53%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
             P++I  F ++ + P  PVSL C   G P P ++W LD  P L G  H         R+ Q
Sbjct:   407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGH---------RISQ 457

Query:    62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
             +  +    V     L I + Q   D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct:   458 MITSEGNVV---SYLNISSSQV-RDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 512

Query:   122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGV 180
             ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F N GTL + +VQK+ D G 
Sbjct:   513 ITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 572

Query:   181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
             Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct:   573 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 631

Query:   241 KNGLPILSAMGV 252
             K+G PI +++GV
Sbjct:   632 KDGRPIPASLGV 643

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 3.6e-40, P = 3.6e-40
 Identities = 104/252 (41%), Positives = 136/252 (53%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
             P++I  F ++ + P  PVSL C   G P P ++W LD  P L G  H         R+ Q
Sbjct:   407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGH---------RISQ 457

Query:    62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
             +  +    V     L I + Q   D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct:   458 MITSEGNVV---SYLNISSSQV-RDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 512

Query:   122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGV 180
             ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F N GTL + +VQK+ D G 
Sbjct:   513 ITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 572

Query:   181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
             Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct:   573 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 631

Query:   241 KNGLPILSAMGV 252
             K+G PI +++GV
Sbjct:   632 KDGRPIPASLGV 643

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 442 (160.7 bits), Expect = 4.5e-40, P = 4.5e-40
 Identities = 105/252 (41%), Positives = 135/252 (53%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
             P++I  F ++ + P  PVSL C   G P P I+W LD  P L G  H         R+ Q
Sbjct:   407 PKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSH---------RISQ 457

Query:    62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
             +  +    V     L I + Q   D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct:   458 MITSEGNVV---SYLNISSSQV-RDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 512

Query:   122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGV 180
             ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F N GTL + +VQK+ D G 
Sbjct:   513 ITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 572

Query:   181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
             Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct:   573 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 631

Query:   241 KNGLPILSAMGV 252
             K+G PI  ++GV
Sbjct:   632 KDGRPIPGSLGV 643

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|F1MKB9 DSCAM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 435 (158.2 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 104/252 (41%), Positives = 135/252 (53%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQ 61
             P++I  F ++ + P   VSL C   G P P I+W LD  P L G  H         R+ Q
Sbjct:   243 PKIISAFSEKVVSPAEAVSLMCNVKGTPLPTITWTLDDDPILKGGSH---------RISQ 293

Query:    62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
             +  +    V     L I + Q   D GVY CTA N  G    Q   I+V G   +RPM N
Sbjct:   294 MITSEGNVV---SYLNISSSQV-RDGGVYRCTANNSAGVVLYQ-ARINVRGPASIRPMKN 348

Query:   122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGV 180
             ++AIAG   Y+ C V GYP  SI W K    LP N RQ  F N GTL + +VQK+ D G 
Sbjct:   349 ITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGE 408

Query:   181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
             Y C    +   S+SQ+VH++V VPP I PFEF P    G R  + C+V  GD P+TI+W 
Sbjct:   409 YTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEF-PRFSIGQRVFIPCVVVSGDLPITITWQ 467

Query:   241 KNGLPILSAMGV 252
             K+G PI +++GV
Sbjct:   468 KDGRPIPASLGV 479

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1N4K6 DSCAML1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 425 (154.7 bits), Expect = 2.7e-38, P = 2.7e-38
 Identities = 100/253 (39%), Positives = 134/253 (52%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             P+++  F ++ + PG   SL C A G P P I+W LD  P+  D        G  R  Q 
Sbjct:   241 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTITWALDDEPIVRD--------GSHRTNQY 292

Query:    63 PLNRRQKVFPNGTLLIE-NVQ--KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
              ++       +GT +   NV   +  D GVY CTA N  G S+     I+V G P +R M
Sbjct:   293 TMS-------DGTTISHMNVTGPQIRDGGVYRCTARNSVG-SAEYQARINVRGPPSIRAM 344

Query:   120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
              N++A+AG    + C V GYP  SI W K    LP N RQ VF NGTL + +VQK  D G
Sbjct:   345 RNITAVAGRDTLVNCRVIGYPYYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEG 404

Query:   180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
              Y C+   +   S SQ+VH++V VPP I PFEF P    G    + C+V+ GD P+ I+W
Sbjct:   405 EYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPP-ASIGQLLYIPCVVSSGDMPIRITW 463

Query:   240 LKNGLPILSAMGV 252
              K+G  I+S  GV
Sbjct:   464 RKDGQVIISGSGV 476

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-15
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-13
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-12
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-11
smart00409	85	smart00409, IG, Immunoglobulin	6e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-10
smart00409	85	smart00409, IG, Immunoglobulin	3e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-10
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-09
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	4e-09
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	5e-09
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	6e-09
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	6e-09
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	8e-09
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-08
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	9e-08
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	1e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-07
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	6e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-06
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	1e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-06
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	2e-06
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	2e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	3e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-06
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	4e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	2e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	4e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	6e-05
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	6e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	7e-05
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	7e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	9e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-04
cd05741	92	cd05741, Ig_CEACAM_D1_like, First immunoglobulin (	1e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	2e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	3e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	5e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	6e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	7e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	7e-04
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	8e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.001
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	0.001
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.002
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.002
cd05741	92	cd05741, Ig_CEACAM_D1_like, First immunoglobulin (	0.003
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.003
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.003
cd05774	105	cd05774, Ig_CEACAM_D1, First immunoglobulin (Ig)-l	0.003
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.004
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.004
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
           F +   +V    GE     C V G P  +++W K  Q L  + R KV   G   TL I N
Sbjct: 3   FTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISN 62

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           VQ D D G Y C ATN  G + +      +TV
Sbjct: 63  VQPD-DEGKYTCVATNSAGEAEA---SAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
           G+ + L CP  G P+ +ITW K  + LP + R  V    TL I++V  + D G+Y C A 
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRF-VASGSTLTIKSVSLE-DSGLYTCVAE 59

Query: 187 NKQG 190
           N  G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 7e-13
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 21/84 (25%)

Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
           G  V+L C A GNP P+I+W  DG PL        +                      T
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVAS--------------------GST 40

Query: 76 LLIENVQKDHDRGVYWCTATNKQG 99
          L I++V  + D G+Y C A N  G
Sbjct: 41 LTIKSVSLE-DSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 23/101 (22%)

Query: 8   KFIQQ----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRHENKNRIGEARVQQL 62
           KF Q+     +Q G      C  TG+P P +SW  DG PL   DR +     G       
Sbjct: 2   KFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTY----- 56

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
                       TL I NVQ D D G Y C ATN  G + +
Sbjct: 57  ------------TLTISNVQPD-DEGKYTCVATNSAGEAEA 84

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 59.4 bits (143), Expect = 7e-12
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 13/84 (15%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V+L C+A+G P P I+W  +G PL                     + R     + TL I 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRV------------RSSRGTSSGSSTLTIS 48

Query: 80  NVQKDHDRGVYWCTATNKQGRSSS 103
           NV  + D G Y C A+N  G  S+
Sbjct: 49  NVTLE-DSGTYTCVASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 23/90 (25%)

Query: 22  LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81
           L+CIA G PTP ISW      + G+               LP +R +    N TL I+NV
Sbjct: 3   LECIAEGLPTPEISW----IKIGGE---------------LPADRTKFENFNKTLKIDNV 43

Query: 82  QKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
             + D G Y CTA+N  G +      ISVT
Sbjct: 44  S-EEDDGEYRCTASNSLGSARH---TISVT 69

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNG---TLLIENVQKD 175
            +V+   GE + L C  +G P   +TW K   +L   + R  V  +G   TL I NV  +
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISV 201
            D G Y C ATN  G S+S    ++V
Sbjct: 62  -DSGTYTCAATNSSG-SASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNG---TLLIENVQKD 175
            +V+   GE + L C  +G P   +TW K   +L   + R  V  +G   TL I NV  +
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISV 201
            D G Y C ATN  G S+S    ++V
Sbjct: 62  -DSGTYTCAATNSSG-SASSGTTLTV 85

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 23/103 (22%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             T++ G  V+L C A+G+P P ++W   G                   + L  + R  V
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQG------------------GKLLAESGRFSV 44

Query: 71  FPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             +G   TL I NV  + D G Y C ATN  G S+S    ++V
Sbjct: 45  SRSGSTSTLTISNVTPE-DSGTYTCAATNSSG-SASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 23/103 (22%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             T++ G  V+L C A+G+P P ++W   G                   + L  + R  V
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQG------------------GKLLAESGRFSV 44

Query: 71  FPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             +G   TL I NV  + D G Y C ATN  G S+S    ++V
Sbjct: 45  SRSGSTSTLTISNVTPE-DSGTYTCAATNSSG-SASSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 54.0 bits (129), Expect = 7e-10
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 132 LGCPVAGYPIESITWQKGVQQLP-------LNRRQKVFPNGTLLIENVQKDHDRGVYWCT 184
           L C  +G P  +ITW K  + LP        + R     + TL I NV  + D G Y C 
Sbjct: 3   LTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE-DSGTYTCV 61

Query: 185 ATNKQGRSSS 194
           A+N  G  S+
Sbjct: 62  ASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G P +L C A G PTP I W  +G PL  D+ + ++               + V P+G+L
Sbjct: 16  GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRS--------------HRIVLPSGSL 61

Query: 77  ----LIENVQKDHDRGVYWCTATNKQGRSSSQN 105
               ++   +   D GVY C A N  G + S+N
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRN 94

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 21/85 (24%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
          G PV L C A G P P I WK DG  L                  L  + R++  PNG+L
Sbjct: 14 GGPVVLNCSAEGEPPPKIEWKKDGVLL-----------------NLVSDERRQQLPNGSL 56

Query: 77 LIENVQKDH----DRGVYWCTATNK 97
          LI +V        D G Y C A N 
Sbjct: 57 LITSVVHSKHNKPDEGFYQCVAQND 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           L L C   G P   I+W K   +LP +R +    N TL I+NV  + D G Y CTA+N  
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVS-EEDDGEYRCTASNSL 59

Query: 190 GRSSSQNVHISVTV 203
           G +      ISVTV
Sbjct: 60  GSARH---TISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
          G    L C A G P P I+W+L+G P+                  LP + R++V   GTL
Sbjct: 1  GETGRLDCEAEGIPQPTITWRLNGVPIEE----------------LPPDPRRRVDG-GTL 43

Query: 77 LIENVQKDHDRGVYWCTATNKQG 99
          ++ NVQ  +D  VY C A+N  G
Sbjct: 44 ILSNVQ-PNDTAVYQCNASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C   GYP   I W KG  QL ++RR  V  +GTL I  V   HD+G Y C A N  G S 
Sbjct: 9   CEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVAL-HDQGQYECQAVNIVG-SQ 66

Query: 194 SQNVHISV 201
                ++V
Sbjct: 67  RTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQK-GVQ-QLPLNRRQKVFPNGTLLIENVQKDH-- 176
           ++ A+ G P+ L C   G P   I W+K GV   L  + R++  PNG+LLI +V      
Sbjct: 8   DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHN 67

Query: 177 --DRGVYWCTATNK 188
             D G Y C A N 
Sbjct: 68  KPDEGFYQCVAQND 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 16/81 (19%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V LKC A+GNP P I+W  DG P   +     +RIG  +V       R+K +   TL++E
Sbjct: 12  VRLKCPASGNPRPTITWLKDGKPFKKE-----HRIGGYKV-------RKKKW---TLILE 56

Query: 80  NVQKDHDRGVYWCTATNKQGR 100
           +V    D G Y C   NK G 
Sbjct: 57  SV-VPSDSGKYTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C     P  +I+W KG + L  + R  ++P+G+L I NV K  D G Y C A N  G+++
Sbjct: 8   CKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKS-DEGKYTCFAENFFGKAN 66

Query: 194 S 194
           S
Sbjct: 67  S 67

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 121 NVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDR 178
           +     GE   L C P  G+P  +++W+K  Q L L N R ++  +G LLI   +K  D 
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKS-DE 63

Query: 179 GVYWCTATNKQGRSSSQNVHISV 201
           G Y C ATN  G   S    +SV
Sbjct: 64  GTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 48.0 bits (114), Expect = 9e-08
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 25/93 (26%)

Query: 22  LKCIATGNPTPHISWKLDG---YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-NGTLL 77
           L+C ATG+PTP I+W+ DG   +P A +                   RR  V P +    
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARE-------------------RRMHVMPEDDVFF 43

Query: 78  IENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           I +V+ + D GVY CTA N  G S S N  ++V
Sbjct: 44  IVDVKIE-DTGVYSCTAQNTAG-SISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)

Query: 132 LGCPVAGYPIESITWQ----KGVQQ----LPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
           L C   GYP  +I W+    +G  Q      L  R ++  NG+LLI++V ++ D G Y C
Sbjct: 3   LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEE-DSGYYLC 61

Query: 184 TATNKQGRSSSQNVHISV 201
             +N  G  +S+++ ++V
Sbjct: 62  KVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 26/98 (26%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
            L+  PP        G+P P +SW+ DG PL  D                  N R ++  
Sbjct: 15  VLECSPPR-------GHPEPTVSWRKDGQPLNLD------------------NERVRIVD 49

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           +G LLI   +K  D G Y C ATN  G   S    +SV
Sbjct: 50  DGNLLIAEARKS-DEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 17/84 (20%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V   C+ATG PTP I+W+L+   +             ARV              GTL
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVP----------DSARVSITSEGGY------GTL 44

Query: 77  LIENVQKDHDRGVYWCTATNKQGR 100
            I +V K+ D+G Y C A N +G 
Sbjct: 45  TIRDV-KESDQGAYTCEAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 181
                GE + L C   G P  + TW K     PL+  Q  F        NV  + D G Y
Sbjct: 9   TVVFEGEDVTLTCSAPGNPPPNYTWYKDGV--PLSSSQNGF-----FTPNVSAE-DSGTY 60

Query: 182 WCTATNKQGRSSSQNVHISV 201
            C A+N  G  +S  V ++V
Sbjct: 61  TCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 21/94 (22%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V   C A G P P I+W   G                    QL ++RR  V  +GTL
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGG-------------------SQLSVDRRHLVLSSGTL 42

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            I  V   HD+G Y C A N  G S      ++V
Sbjct: 43  RISRVAL-HDQGQYECQAVNIVG-SQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V+L C A G P P I WK            +K R          L  R ++  NG+LLI+
Sbjct: 1   VTLNCSAEGYPPPTIVWK-----------HSKGRGHPQHTHTCCLAGRIQLLSNGSLLIK 49

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           +V ++ D G Y C  +N  G  +S+++ ++V
Sbjct: 50  HVLEE-DSGYYLCKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G   +L+C A G+P P I W                   + ++  +  + R  V+ NGTL
Sbjct: 1   GQRATLRCKARGDPEPAIHW----------------ISPDGKL--ISNSSRTLVYDNGTL 42

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            I  +    D G + C A+N  G  ++  V + +
Sbjct: 43  DI-LITTVKDTGSFTCIASNAAG-EATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 23/89 (25%)

Query: 17  GPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
           G  V+L+C A GNP P I W K+DG   +                       +       
Sbjct: 16  GQNVTLECFALGNPVPQIKWRKVDGSMPS---------------------SAEISMSGAV 54

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
           L I N+Q + D G Y C A N +G+ + Q
Sbjct: 55  LKIPNIQFE-DEGTYECEAENIKGKDTHQ 82

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 19/92 (20%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           + +KC A GNP P  SW  +G     ++        + RV       +     +GTL+I+
Sbjct: 1   IVIKCEAKGNPPPTFSWTRNGTHFDPEK--------DPRV-----TMKPD---SGTLVID 44

Query: 80  --NVQKDHD-RGVYWCTATNKQGRSSSQNVHI 108
             N  +  D  G Y C A+N+ G + S  +H+
Sbjct: 45  NMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 18/83 (21%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
          G    L C   G PTP+I+W ++G P+ G   + +  +                  +G L
Sbjct: 1  GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS-----------------SGAL 43

Query: 77 LIENVQKDHDRGVYWCTATNKQG 99
          ++ +VQ   D  VY C A N+ G
Sbjct: 44 ILTDVQPS-DTAVYQCEARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 132 LGCPVAGYPIESITWQK-GVQQLPL--NRRQKVFP-NGTLLIENVQKDHDRGVYWCTATN 187
           L C   G+P   I WQK G    P    RR  V P +    I +V+ + D GVY CTA N
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIE-DTGVYSCTAQN 61

Query: 188 KQGRSSSQNVHISV 201
             G S S N  ++V
Sbjct: 62  TAG-SISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 19/84 (22%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V LKC+A+GNP P I+W  D  PL          IGE+R ++             TL
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPT------EIGESRKKKW------------TL 50

Query: 77  LIENVQKDHDRGVYWCTATNKQGR 100
            ++N++ + D G Y C  +N+ G 
Sbjct: 51  SLKNLKPE-DSGKYTCHVSNRAGE 73

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTL----LIENVQKDHD 177
           G+P  L C   G P  +I W K  Q L  ++      + V P+G+L    ++   +   D
Sbjct: 16  GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSD 75

Query: 178 RGVYWCTATNKQGRSSSQN 196
            GVY C A N  G + S+N
Sbjct: 76  EGVYVCVAHNSLGEAVSRN 94

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 127 GEPLYLGCPVAGYPIESITWQ---KGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
           GE   L C   G P  +ITW+     +++LP + R++V   GTL++ NVQ  +D  VY C
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQ-PNDTAVYQC 58

Query: 184 TATNKQG 190
            A+N  G
Sbjct: 59  NASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 27/100 (27%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
              +  G  V+L C A GNP P+ +W  DG                      PL+  Q  
Sbjct: 8   PTVVFEGEDVTLTCSAPGNPPPNYTWYKDGV---------------------PLSSSQNG 46

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           F        NV  + D G Y C A+N  G  +S  V ++V
Sbjct: 47  F-----FTPNVSAE-DSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C V G P+ ++ W+K   +LP   R ++  + +L I NV    D G Y C A N  G+  
Sbjct: 5   CEVGGDPVPTVLWRKEDGELPK-GRAEILDDKSLKIRNVTAG-DEGSYTCEAENMVGKIE 62

Query: 194 S 194
           +
Sbjct: 63  A 63

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 181
             A+ G+ + L C   G P+  I W+K V     +  +       L I N+Q + D G Y
Sbjct: 11  TYALKGQNVTLECFALGNPVPQIKWRK-VDGSMPSSAEISMSGAVLKIPNIQFE-DEGTY 68

Query: 182 WCTATNKQGRSSSQ 195
            C A N +G+ + Q
Sbjct: 69  ECEAENIKGKDTHQ 82

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
          VSL C A G+P P   W ++G                  +   P +R   V   G L+I 
Sbjct: 22 VSLNCRARGSPPPTYRWLMNG----------------TEIDDEPDSRYSLV--GGNLVIS 63

Query: 80 NVQKDHDRGVYWCTATNKQG 99
          N  K  D G Y C A+N  G
Sbjct: 64 NPSKAKDAGRYQCLASNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 18/90 (20%)

Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
           ++ C A+GNP P I+W  D  P+                     N R K   +G L IEN
Sbjct: 2   TMLCAASGNPDPEITWFKDFLPV-----------------DTTSNGRIKQLRSGALQIEN 44

Query: 81  VQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            ++  D+G Y C ATN  G   S   ++ V
Sbjct: 45  SEES-DQGKYECVATNSAGTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 20/84 (23%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V ++C     P P ISW                +  E        + R  ++P+G+L I 
Sbjct: 4   VIIECKPKAAPKPTISWS---------------KGTELLTN----SSRICIWPDGSLEIL 44

Query: 80  NVQKDHDRGVYWCTATNKQGRSSS 103
           NV K  D G Y C A N  G+++S
Sbjct: 45  NVTKS-DEGKYTCFAENFFGKANS 67

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNPTP + W  +G     +     +RIG  +V+            + +L++E
Sbjct: 12  VKFRCPAAGNPTPTMRWLKNGKEFKQE-----HRIGGYKVRN----------QHWSLIME 56

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           +V    D+G Y C   N+ G S +   H+ V
Sbjct: 57  SVVPS-DKGNYTCVVENEYG-SINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C     P    +W KG + L  N R  ++ +G+L I N+ K  D G Y C A N +G+++
Sbjct: 8   CKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKL-DEGSYTCFAENNRGKAN 66

Query: 194 SQNV 197
           S  V
Sbjct: 67  STGV 70

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYW 182
           G  + L C V+G P   +TW K  + L  +       N     TL I NV  +   G Y 
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDS-GTYT 59

Query: 183 CTA 185
           C  
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN----RRQKVFPNGTLLIENVQKDHD 177
           +  +AG  L L  P++G P  ++TW +G +         R +      + +IE  +++ D
Sbjct: 5   IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAERE-D 63

Query: 178 RGVYWCTATNKQGRSSSQNVHISV 201
            GVY  T TN  G   + ++ + V
Sbjct: 64  EGVYTITVTNPVGEDHA-SLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 21/84 (25%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C   G+P P + W+ +               GE     LP   R ++  + +L I 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKED--------------GE-----LPK-GRAEILDDKSLKIR 40

Query: 80  NVQKDHDRGVYWCTATNKQGRSSS 103
           NV    D G Y C A N  G+  +
Sbjct: 41  NVTAG-DEGSYTCEAENMVGKIEA 63

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           +  A  G  L   C  +G P  +  W K  Q L    R +V   G L I  +    D G+
Sbjct: 8   DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLS-DSGM 65

Query: 181 YWCTATNKQG 190
           Y C A NK G
Sbjct: 66  YQCVAENKHG 75

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
           T   G  V+L C A G P P ++W  DG P+  +  E K    E   +            
Sbjct: 14  TANLGQSVTLACDADGFPEPTMTWTKDGEPI--ESGEEKYSFNEDGSE------------ 59

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
              + I +V K  D   Y C A NK G      +H+ V
Sbjct: 60  ---MTILDVDKL-DEAEYTCIAENKAGE-QEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 19/79 (24%)

Query: 141 IESITWQKGVQQLPL------------------NRRQKVFPNGTLLIENVQKDHDRGVYW 182
           ++ ITW KG  +                     + R+ ++PNG+LLI+N+ K+ D G Y 
Sbjct: 15  LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKE-DSGTYT 73

Query: 183 CTATNKQGRSSSQNVHISV 201
               +  G + +    + V
Sbjct: 74  LQIISTNGVTENAKFFLRV 92

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain. Also belonging to this group is the N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84-like family. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. SLAM family proteins are organized as an extracellular domain with having two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region having tyr-based motifs. The extracellular domain is organized as a membrane-distal Ig variable (IgV) domain that is responsible for ligand recognition and a membrane-proximal truncated Ig constant-2 (IgC2) domain. Length = 92

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V+ +C ATGNP P I W+ +G         ++N +   +  Q   + R  V   G L
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEG---------SQNLLFSYQPPQ--SSSRFSVSQTGDL 49

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
            I NVQ+  D G Y C   N  G S     ++ VT     RP
Sbjct: 50  TITNVQRS-DVGYYICQTLNVAG-SILTKAYLEVTDVIADRP 89

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 18/79 (22%)

Query: 21 SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
          +L C A GNP P ISW  +G P                ++  P +  +KV    T++   
Sbjct: 5  TLICRANGNPKPSISWLTNGVP----------------IEIAPTDPSRKV-DGDTIIFSK 47

Query: 81 VQKDHDRGVYWCTATNKQG 99
          VQ +    VY C A+N+ G
Sbjct: 48 VQ-ERSSAVYQCNASNEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 22/92 (23%)

Query: 6  IYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPL 64
          I      ++  G  V+L C A G P  P ISW  +G                        
Sbjct: 4  ITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSIS--------------------G 43

Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96
                    TL + +V  +   G Y C A+N
Sbjct: 44 GSGGLGSSGSTLTLSSVTSEDS-GTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQL-PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
           G+   L C   G P  +I W     +L   + R  V+ NGTL I  +    D G + C A
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDI-LITTVKDTGSFTCIA 59

Query: 186 TNKQGRSSSQNVHISV 201
           +N  G  ++  V + +
Sbjct: 60  SNAAG-EATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 25/93 (26%)

Query: 20  VSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI 78
           + L+CIA G PTP + W ++DG                     L  NR +K+  N TL +
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDG--------------------PLSPNRTKKLNNNKTLQL 40

Query: 79  ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
           +NV +  D G Y CTA N +G   S   H +VT
Sbjct: 41  DNVLESDD-GEYVCTAENSEG---SARHHYTVT 69

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           L L C   G P   + W +    L  NR +K+  N TL ++NV +  D G Y CTA N +
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDD-GEYVCTAENSE 59

Query: 190 GRSSSQNVHISVTV 203
           G   S   H +VTV
Sbjct: 60  G---SARHHYTVTV 70

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVY 181
           AG  + L CP +G P  +ITW K  +      R   +       TL++E+V    D G Y
Sbjct: 8   AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESV-VPSDSGKY 66

Query: 182 WCTATNKQGR 191
            C   NK G 
Sbjct: 67  TCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 21/76 (27%)

Query: 24 CIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK 83
          C A+GNP P   W  +G PLA           E R++             G L I  +  
Sbjct: 21 CKASGNPRPAYRWLKNGQPLA----------SENRIEVE----------AGDLRITKLSL 60

Query: 84 DHDRGVYWCTATNKQG 99
            D G+Y C A NK G
Sbjct: 61 S-DSGMYQCVAENKHG 75

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLL-IENVQKDHDRG 179
           +  A+ G+ + L C   G P+  I W+K ++ +P     ++  +G +L I N+Q + D G
Sbjct: 10  DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT--AEISMSGAVLKIFNIQPE-DEG 66

Query: 180 VYWCTATNKQGRSSSQ 195
            Y C A N +G+   Q
Sbjct: 67  TYECEAENIKGKDKHQ 82

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PNGTLLIENVQKDHDR 178
           N +A  G+ + L C   G+P  ++TW K  + +     +  F      + I +V K  D 
Sbjct: 12  NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKL-DE 70

Query: 179 GVYWCTATNKQGRSSSQNVHISV 201
             Y C A NK G      +H+ V
Sbjct: 71  AEYTCIAENKAGE-QEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 134 CPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
           C   G P   +I+W +                 TL + +V  +   G Y C A+N
Sbjct: 22  CSAEGGPPPPTISWYRNGSISG-GSGGLGSSGSTLTLSSVTSEDS-GTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 19/111 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRI---GEARV 59
           P++ Y   Q  ++    ++L C A+G+P P I+W+     ++ +       I     ARV
Sbjct: 3   PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARV 62

Query: 60  QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             L L   Q                 D G Y CTA+N  G+  SQ++++ V
Sbjct: 63  SSLTLKYIQYT---------------DAGEYLCTASNTIGQ-DSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-----------GTLLIENVQKD 175
           GE     C V G P   ITW+K   Q+       + PN           G L+I N Q  
Sbjct: 1   GETASFHCDVTGRPPPEITWEK---QVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP- 56

Query: 176 HDRGVYWCTATNKQG 190
            D G+Y CTA N  G
Sbjct: 57  QDAGLYTCTARNSGG 71

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVF--PN-GTLLIE---NVQKDHDRGVYWCTATN 187
           C   G P  S +W +      +++  KV   PN GTL+I      + +   GVY CTA N
Sbjct: 5   CEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARN 64

Query: 188 KQGRSSSQNVHI 199
           ++G + S N+ I
Sbjct: 65  ERGAAVSNNIVI 76

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 23/103 (22%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             +  KF       G  V+L+C A GNP P I W+               +I E      
Sbjct: 2   ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWR---------------KILE------ 40

Query: 63  PLNRRQKVFPNGTLL-IENVQKDHDRGVYWCTATNKQGRSSSQ 104
           P+    ++  +G +L I N+Q + D G Y C A N +G+   Q
Sbjct: 41  PMPATAEISMSGAVLKIFNIQPE-DEGTYECEAENIKGKDKHQ 82

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 19/92 (20%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           + ++C A G P P  SW  +G     D+        + +V   P          GTL+I 
Sbjct: 1   IVIQCEAKGKPPPSFSWTRNGTHFDIDK--------DPKVTMKP--------NTGTLVIN 44

Query: 80  ---NVQKDHDRGVYWCTATNKQGRSSSQNVHI 108
                + +   GVY CTA N++G + S N+ I
Sbjct: 45  IMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191
           + C   G P  +ITW K   Q+  + +  + P G L I +V    D+G Y C A N  G 
Sbjct: 3   IPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVA-DQGRYECVARNTIGY 61

Query: 192 SSS 194
           +S 
Sbjct: 62  ASV 64

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWC 183
           GE +   C   G P   I W+     +P + R  +      GTL I +V K+ D+G Y C
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDV-KESDQGAYTC 59

Query: 184 TATNKQGR 191
            A N +G 
Sbjct: 60  EAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 16/75 (21%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
          V+L C  +G P   ++W            E K       V               TL I 
Sbjct: 4  VTLTCSVSGPPQVDVTWF----------KEGKGLEESTTVGTDENRVSSI-----TLTIS 48

Query: 80 NVQKDHDRGVYWCTA 94
          NV  +   G Y C  
Sbjct: 49 NVTPEDS-GTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 65  NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           + R+ ++PNG+LLI+N+ K+ D G Y     +  G + +    + V
Sbjct: 48  SGRETIYPNGSLLIQNLTKE-DSGTYTLQIISTNGVTENAKFFLRV 92

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain. Also belonging to this group is the N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84-like family. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. SLAM family proteins are organized as an extracellular domain with having two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region having tyr-based motifs. The extracellular domain is organized as a membrane-distal Ig variable (IgV) domain that is responsible for ligand recognition and a membrane-proximal truncated Ig constant-2 (IgC2) domain. Length = 92

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 20/84 (23%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V + C A G+P P I+W  DG                    Q+  + +  + P G L I 
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGV-------------------QVTESGKFHISPEGYLAIR 41

Query: 80  NVQKDHDRGVYWCTATNKQGRSSS 103
           +V    D+G Y C A N  G +S 
Sbjct: 42  DVGVA-DQGRYECVARNTIGYASV 64

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 135 PVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGR 191
           P++G P  ++TW K  + L L+ R ++     + +L+I+N ++  D G Y  T  N  G 
Sbjct: 7   PISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERS-DSGKYTLTLKNPAGE 65

Query: 192 SSSQNVHISVTV 203
            S     I+V V
Sbjct: 66  KS---ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143251 cd05774, Ig_CEACAM_D1, First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 104 QNVHISVTGAPFVRPMGNVSAIA---GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK 160
           +NV + V   P      N+ A A   G+ +     +A Y I + +   G        R+ 
Sbjct: 14  ENVLLLVHNLP-----ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSG---RET 65

Query: 161 VFPNGTLLIENV-QKDHDRGVYWCTATNKQGRSSSQNVHISV 201
           ++PNG+LLI+NV QK  D G Y         +     VH+ V
Sbjct: 66  IYPNGSLLIQNVTQK--DTGFYTLQTITTNFQVEQATVHLQV 105

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain. Length = 105

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 127 GEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
           GE   L C V G P  +ITW      ++    + R+ V  +G L++ +VQ   D  VY C
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-SSGALILTDVQPS-DTAVYQC 58

Query: 184 TATNKQG 190
            A N+ G
Sbjct: 59  EARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 134 CPVAGYPIESITWQKGVQQLPL----NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           C  +G P   ITW K    LP+    N R K   +G L IEN ++  D+G Y C ATN  
Sbjct: 5   CAASGNPDPEITWFK--DFLPVDTTSNGRIKQLRSGALQIENSEES-DQGKYECVATNSA 61

Query: 190 GRSSSQNVHISV 201
           G   S   ++ V
Sbjct: 62  GTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 19/90 (21%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           VS+ C A  NP P   W+ +                      + L   +     G L+I 
Sbjct: 22  VSVNCRARANPFPIYKWRKNNL-------------------DIDLTNDRYSMVGGNLVIN 62

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHIS 109
           N  K  D G Y C  +N  G+  S+   +S
Sbjct: 63  NPDKYKDAGRYVCIVSNIYGKVRSREATLS 92

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		99.98
KOG4221|consensus	1381		99.97
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.96
KOG4222|consensus	1281		99.95
KOG4222|consensus	1281		99.94
KOG4221|consensus	1381		99.93
KOG4194|consensus	873		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.91
PHA02785	326	IL-beta-binding protein; Provisional	99.85
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.77
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.76
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.7
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.68
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.68
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.68
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.67
PHA02826	227	IL-1 receptor-like protein; Provisional	99.66
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.66
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.65
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.65
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.65
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.64
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.64
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.63
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.63
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.63
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.63
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.63
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.63
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.62
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.62
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.62
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.62
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.62
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.61
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.61
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.61
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.6
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.6
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.59
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.59
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.59
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.58
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.58
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.58
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.58
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.57
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.57
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.57
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.56
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.56
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.56
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.56
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.56
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.55
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.55
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.55
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.55
KOG3515|consensus	741		99.54
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.54
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.54
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.53
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.53
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.53
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.53
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.53
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.52
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.52
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.52
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.52
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.52
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.52
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.52
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.52
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.52
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.52
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.52
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.52
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.51
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.51
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.51
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.51
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.51
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.51
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.51
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.51
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.5
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.5
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.5
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.5
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.49
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.49
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.49
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.48
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.48
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.48
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.48
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.47
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.47
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.47
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.47
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.47
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.47
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.47
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.47
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.47
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.46
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.46
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.46
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.46
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.45
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.45
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.45
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.45
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.44
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.44
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.44
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.44
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.44
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.44
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.44
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.44
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.44
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.44
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.44
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.43
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.43
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.43
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.43
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.43
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.43
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.42
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.42
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.41
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.41
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.41
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.41
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.41
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.4
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.4
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.4
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.4
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.39
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.38
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.37
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.37
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.36
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.36
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.36
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.35
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.35
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.35
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.35
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.34
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.34
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.34
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.33
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.33
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.31
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.31
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.31
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.31
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.31
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.3
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.3
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.3
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.29
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.29
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.29
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.28
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.27
PHA03376	221	BARF1; Provisional	99.27
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.27
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.26
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.25
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.24
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.22
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.21
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.21
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.2
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.19
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.18
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.18
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.17
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.17
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.16
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.15
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.15
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.15
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.15
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.13
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	99.12
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.12
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	99.11
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.11
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.1
smart00409	86	IG Immunoglobulin.	99.1
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.1
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.09
KOG3515|consensus	741		99.09
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.09
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.09
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	99.09
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.09
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.07
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.07
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.06
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.06
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.06
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.05
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.04
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.04
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.03
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.03
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	99.03
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.02
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.02
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.0
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.0
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.99
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.99
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.98
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.98
smart00409	86	IG Immunoglobulin.	98.98
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.97
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.96
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.96
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.96
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.94
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.94
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.94
PHA03376	221	BARF1; Provisional	98.92
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.92
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.91
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.91
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.9
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.9
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.9
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.9
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.88
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.88
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.88
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.86
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.85
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.85
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.84
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.83
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.81
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.79
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.78
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.77
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.73
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.7
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.66
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.64
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.6
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.59
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.58
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.58
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.57
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.55
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.55
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.55
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.54
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.5
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.5
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.5
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.47
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.46
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.46
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.45
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.45
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.44
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.44
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.43
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.42
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.41
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.4
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.39
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.37
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.36
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.35
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.33
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.33
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.32
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.32
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.32
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.3
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.3
smart00406	81	IGv Immunoglobulin V-Type.	98.28
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.28
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.23
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.23
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.22
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.21
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.18
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.18
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.17
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.17
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.17
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.17
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.15
KOG1480|consensus	909		98.14
smart00407	75	IGc1 Immunoglobulin C-Type.	98.14
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.14
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.11
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.1
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.08
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.07
PHA03270	466	envelope glycoprotein C; Provisional	98.06
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.05
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	98.01
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.01
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.0
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.0
PHA03269	566	envelope glycoprotein C; Provisional	97.99
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.98
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.97
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.97
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.94
PHA02982	251	hypothetical protein; Provisional	97.94
smart00407	75	IGc1 Immunoglobulin C-Type.	97.93
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.92
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.92
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.91
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.9
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.89
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.87
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.85
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.83
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.82
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.8
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.8
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.77
PHA03273	486	envelope glycoprotein C; Provisional	97.77
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.74
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.74
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.72
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.7
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.7
PHA02633	63	hypothetical protein; Provisional	97.68
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.66
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.63
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.62
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.59
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.59
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.59
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.58
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.54
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.49
PHA03271	490	envelope glycoprotein C; Provisional	97.41
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.37
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.36
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.32
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.31
smart00406	81	IGv Immunoglobulin V-Type.	97.25
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.2
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.92
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.89
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.71
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.7
PHA03270	466	envelope glycoprotein C; Provisional	96.65
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.62
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.59
PHA03269	566	envelope glycoprotein C; Provisional	96.58
PHA03273	486	envelope glycoprotein C; Provisional	96.53
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.46
KOG1480|consensus	909		96.4
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.38
PHA02633	63	hypothetical protein; Provisional	96.34
PHA02982	251	hypothetical protein; Provisional	96.28
PHA03042	286	CD47-like protein; Provisional	96.25
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.21
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.12
PHA03271	490	envelope glycoprotein C; Provisional	96.11
KOG4597|consensus	560		96.08
PHA03042	286	CD47-like protein; Provisional	96.08
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.33
PHA02865	338	MHC-like TNF binding protein; Provisional	95.23
KOG0613|consensus	1205		95.2
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	94.7
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.18
KOG4597|consensus	560		94.07
PHA03052	69	Hypothetical protein; Provisional	93.76
PHA02865	338	MHC-like TNF binding protein; Provisional	93.3
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	93.05
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	92.67
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.27
PHA03052	69	Hypothetical protein; Provisional	91.93
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.92
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.92
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	90.8
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.56
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	90.29
PHA03112	141	IL-18 binding protein; Provisional	87.27
PHA03240	258	envelope glycoprotein M; Provisional	87.14
PHA03189	348	UL14 tegument protein; Provisional	86.43
KOG0613|consensus	1205		86.37
PF11049	71	KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-assoc	82.67

>KOG3513|consensus

Probab=100.00  E-value=4.8e-34  Score=235.18  Aligned_cols=229  Identities=30%  Similarity=0.540  Sum_probs=198.2

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .+|.++..+.+..+-.|+++.|.|.+.|.|.+.+.|+++|.++.....+.++.+                 .++.|.|.+
T Consensus       330 a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-----------------~~g~L~is~  392 (1051)
T KOG3513|consen  330 APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-----------------DDGTLIISN  392 (1051)
T ss_pred             cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-----------------eCCEEEEEe
Confidence            378888999999999999999999999999999999999999986644344444                 378999999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecC-Ceecc---CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA-PFVRP---MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN  156 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~  156 (258)
                      + ...|+|.|.|.+.|..|... ..+.|.|.+. |.+..   .....+..|.++.|.|...+.|.+.+.|.++++.+..+
T Consensus       393 v-~~~dsg~YQC~A~Nk~G~i~-anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~  470 (1051)
T KOG3513|consen  393 V-QESDSGVYQCIAENKYGTIY-ANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS  470 (1051)
T ss_pred             c-ccccCeEEEeeeecccceEe-eeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC
Confidence            9 99999999999999999988 8899999876 43333   22346778999999999999999999999988877788


Q ss_pred             cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEec-cCCCCc
Q psy14532        157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT-KGDPPL  235 (258)
Q Consensus       157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~p~~  235 (258)
                      .++.+..+++|.|.++++ +|+|.|+|.|+|..| .......|.|..++.+...|....+..|+.++|+|.+. +-....
T Consensus       471 ~r~~i~edGtL~I~n~t~-~DaG~YtC~A~N~~G-~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~  548 (1051)
T KOG3513|consen  471 GRIRILEDGTLEISNVTR-SDAGKYTCVAENKLG-KAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDI  548 (1051)
T ss_pred             ceEEECCCCcEEecccCc-ccCcEEEEEEEcccC-ccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcce
Confidence            899999999999999998 999999999999999 45677889999999998888888899999999999995 223457


Q ss_pred             eeEEEECCEeccccc
Q psy14532        236 TISWLKNGLPILSAM  250 (258)
Q Consensus       236 ~~~W~~~g~~l~~~~  250 (258)
                      .|.|.+||..++...
T Consensus       549 ~f~W~~nG~~id~~~  563 (1051)
T KOG3513|consen  549 TFTWKKNGRPIDFNP  563 (1051)
T ss_pred             EEEEEECCEEhhccC
Confidence            899999999886543

>KOG3513|consensus

Probab=99.98  E-value=1.4e-30  Score=214.95  Aligned_cols=224  Identities=30%  Similarity=0.485  Sum_probs=181.3

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeecCCCeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.|. ..+.+..+..|+.|.|.|.+.|.|.|++.|.|.+. ++...     ..               ......+|.|.
T Consensus       240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r-----~~---------------~~~~~~vL~I~  299 (1051)
T KOG3513|consen  240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRR-----AT---------------YSNYGKVLKIP  299 (1051)
T ss_pred             CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcc-----ee---------------eeccccEEEec
Confidence            56663 34457788999999999999999999999999765 33322     11               11235689999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR  158 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~  158 (258)
                      ++ +.+|.|.|.|.+.|..|... ..+.|.|..+|... ...+..+..|+.+.+.|.+.|.|.|.++|.+|+.++....+
T Consensus       300 nv-~~~D~G~Y~C~AeN~~G~~~-~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r  377 (1051)
T KOG3513|consen  300 NV-QYEDAGEYECIAENSRGSAT-HSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAER  377 (1051)
T ss_pred             cc-CcCCCeEEEEEEecccccce-eeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCC
Confidence            99 99999999999999999776 88999999887544 46677888999999999999999999999999999875554


Q ss_pred             ---eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecC-CccccCCCCC--ccCCCCeeeEEEEeccCC
Q psy14532        159 ---QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP-PKIAPFEFQP--DLHSGDRAGVQCLVTKGD  232 (258)
Q Consensus       159 ---~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~~  232 (258)
                         .. ..++.|.|.++.. .|+|.|.|.|+|..| .....+.|.|... |.+...+...  .+..|..+.|.|.. .+.
T Consensus       378 ~~~~~-i~~g~L~is~v~~-~dsg~YQC~A~Nk~G-~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~-~as  453 (1051)
T KOG3513|consen  378 DPRYK-IDDGTLIISNVQE-SDSGVYQCIAENKYG-TIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKP-FAS  453 (1051)
T ss_pred             CcceE-EeCCEEEEEeccc-ccCeEEEeeeecccc-eEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeecc-CCC
Confidence               43 3678999999997 999999999999998 4556777888765 6666555443  67789999999999 799


Q ss_pred             CCceeEEEECCEecccccc
Q psy14532        233 PPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       233 p~~~~~W~~~g~~l~~~~~  251 (258)
                      |.+.+.|.++++.+..+.+
T Consensus       454 P~p~~~W~k~~~~~~~~~r  472 (1051)
T KOG3513|consen  454 PKPKVSWLKGGEKLLQSGR  472 (1051)
T ss_pred             CcceEEEEcCCcccccCce
Confidence            9999999998885544443

>KOG4221|consensus

Probab=99.97  E-value=9.7e-30  Score=209.91  Aligned_cols=232  Identities=27%  Similarity=0.488  Sum_probs=194.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .+.|...+.+..+..|+++.|.|.+.+.+.+.+.|.++..++...   .                +.....++.|.|..+
T Consensus       140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~---~----------------r~i~lpsG~L~I~~~  200 (1381)
T KOG4221|consen  140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD---S----------------RVIVLPSGALEISGL  200 (1381)
T ss_pred             cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC---C----------------cEEEcCCCcEEeccc
Confidence            356677788899999999999999999888899999998877655   1                233456899999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCC-------eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       +..|.|.|+|.+.+......+..+.|+|...+       ++..+....+..|+.+.|.|.+.+.|.|.|.|.+|+..+.
T Consensus       201 -qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~  279 (1381)
T KOG4221|consen  201 -QPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKIS  279 (1381)
T ss_pred             -ccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeee
Confidence             99999999999999876655677888887433       2334566788899999999999999999999999999887


Q ss_pred             CCc-ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        155 LNR-RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       155 ~~~-~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      ... ++.....+.|.|.+++. +|+|.|+|.|.|... .......|.|..+|.+...+......++.++.|.|.+ .+.|
T Consensus       280 ~ds~rivl~g~~slliS~a~~-~dSg~YtC~Atn~~D-~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~-~g~p  356 (1381)
T KOG4221|consen  280 VDSYRIVLVGGSSLLISNATD-DDSGKYTCRATNTND-SIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPV-SGKP  356 (1381)
T ss_pred             ecceEEEEecccceEEecccc-ccCceEEEEecCCCc-ccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCC-CCCC
Confidence            654 33444567899999996 999999999999654 3456778899999999999988899999999999999 5779


Q ss_pred             CceeEEEECCEeccccccceecC
Q psy14532        234 PLTISWLKNGLPILSAMGVGRKG  256 (258)
Q Consensus       234 ~~~~~W~~~g~~l~~~~~~~~~~  256 (258)
                      .+.+.|+++|..+..++++...+
T Consensus       357 ~p~v~w~kNgd~~ipsdy~ki~~  379 (1381)
T KOG4221|consen  357 IPTVRWYKNGDRIIPSDYFKIVG  379 (1381)
T ss_pred             cceEEEEecCcccCcccceEecC
Confidence            99999999999999888877654

>KOG4194|consensus

Probab=99.97  E-value=2.9e-29  Score=194.63  Aligned_cols=239  Identities=26%  Similarity=0.403  Sum_probs=185.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCc-ccc-ceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDR-HEN-KNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|+|..+|.++.+..|+.++|+|.+.+.  ....+.|.++.+...... ++. .+... .+  ..-  ..+.....+-|+
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q-~r--~~~--~~e~~~~~~~L~  577 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQ-NR--NGT--FGEREEYTAILH  577 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhh-hc--cCc--cchhhhhhheee
Confidence            5889999999999999999999998763  344899999866332210 000 00000 00  000  011112245689


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcc-cCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ-LPL  155 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~-~~~  155 (258)
                      +.|+ ...|+|.|.|+++|..|...+..+.|+|...|.+. .+.+..+..|+.+.|.|.+.|.|.|.|.|-++|.. ++.
T Consensus       578 L~nV-t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA  656 (873)
T KOG4194|consen  578 LDNV-TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA  656 (873)
T ss_pred             eeee-ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence            9999 99999999999999999998899999998777544 57788899999999999999999999999998765 543


Q ss_pred             Cc--c-eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCC
Q psy14532        156 NR--R-QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD  232 (258)
Q Consensus       156 ~~--~-~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  232 (258)
                      ..  + +.+..+..+.|.+++. +|.|.|+|.|.|..| ..+....|.|...|.+..+.....+..|+++.|.|.+ .+.
T Consensus       657 A~eRRl~Vmpedd~f~Itnvk~-eD~GiYtC~A~n~AG-~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a-~~~  733 (873)
T KOG4194|consen  657 ARERRLHVMPEDDVFFITNVKI-EDQGIYTCTAQNVAG-QISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA-EGA  733 (873)
T ss_pred             hhhheeeecCCCCEEEEecccc-cccceeEEeeecccc-ceeeceEEEEecCCcccccccceEEEecceEEEEEec-CCC
Confidence            32  2 3345667899999998 999999999999998 5678888999999988877778889999999999999 565


Q ss_pred             CC-ceeEEEECCEecccc
Q psy14532        233 PP-LTISWLKNGLPILSA  249 (258)
Q Consensus       233 p~-~~~~W~~~g~~l~~~  249 (258)
                      |+ |...|+|++++|.-.
T Consensus       734 ~a~pr~~W~k~d~pil~t  751 (873)
T KOG4194|consen  734 PADPRLEWFKEDKPILIT  751 (873)
T ss_pred             CCCccccccCCCCceEEe
Confidence            55 999999988887543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=1.5e-26  Score=176.61  Aligned_cols=210  Identities=23%  Similarity=0.355  Sum_probs=146.9

Q ss_pred             eeeecCCCceEEEEEE-----eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC-cEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-TLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~   84 (258)
                      ...+.+|+.+.|.|.+     .+.|.+.+.|+|++.....     ..                 ...++ .|.|.++ ..
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-----~~-----------------~~~~g~~l~i~~~-~~   91 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-----II-----------------PIDNGSNMLILNP-TQ   91 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-----EE-----------------EccCCceEEEccc-Cc
Confidence            4457789999999996     5778889999998742110     00                 01123 4789999 89


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCC--ee-ccCCCcceecCCcEEEEeee-----CcccCceEEEEeCCcccCCC
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAP--FV-RPMGNVSAIAGEPLYLGCPV-----AGYPIESITWQKGVQQLPLN  156 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--~~-~~~~~~~~~~g~~~~l~C~~-----~~~~~~~i~W~~~~~~~~~~  156 (258)
                      +|+|.|+|.+.|..+... ..+.|+|....  .+ .......+.+|..+.|.|..     .+.+.+.+.|+++.. + ..
T Consensus        92 ~DsG~Y~C~a~N~~g~~~-~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~  168 (326)
T PHA02785         92 SDSGIYICITKNETYCDM-MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RN  168 (326)
T ss_pred             ccCeEEEEEEECCCcceE-EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CC
Confidence            999999999999887665 66777775432  11 11233456788999999972     356788999987543 2 22


Q ss_pred             cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc---cceEEEEeec---CCccccCCCCCccCCCCeeeEEEEecc
Q psy14532        157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTK  230 (258)
Q Consensus       157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~  230 (258)
                      .+.....++.|.|.+++. +|.|.|+|.+.+..+...   ...+.|.|..   +|.+ ..+....+..|+.++|.|.+. 
T Consensus       169 ~r~~~~~~~~L~i~~v~~-~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~-  245 (326)
T PHA02785        169 KRLKQRTPGIITIEDVRK-NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVS-  245 (326)
T ss_pred             cceEecCCCeEEEeecCh-hhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEE-
Confidence            344444567899999997 999999999999876322   2234455542   2222 234455677899999999995 


Q ss_pred             CCCC---ceeEEEECCEecccc
Q psy14532        231 GDPP---LTISWLKNGLPILSA  249 (258)
Q Consensus       231 ~~p~---~~~~W~~~g~~l~~~  249 (258)
                      +.|.   +.+.|++||+.|+..
T Consensus       246 g~P~~~~~~v~W~kng~~i~~~  267 (326)
T PHA02785        246 LRPPTTDADVFWISNGMYYEED  267 (326)
T ss_pred             CCCCCCCceEEEEECCEECCCc
Confidence            5554   589999999998653

>KOG4222|consensus

Probab=99.95  E-value=9.6e-27  Score=191.41  Aligned_cols=233  Identities=30%  Similarity=0.481  Sum_probs=190.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCC-ccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|+|+.++.++.+..|+.++|.|.++|.|.+.++|||+|+.+... ....+                 .+..+++|.+.+
T Consensus        31 ~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR-----------------~~lp~gsLf~l~   93 (1281)
T KOG4222|consen   31 PPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHR-----------------FLLPDGSLFLLR   93 (1281)
T ss_pred             CCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcc-----------------eecCCccEEEEe
Confidence            789999999999999999999999999999999999999644333 21222                 233467776655


Q ss_pred             cc----cCCCceEEEEEEEeCCcceeeceEEEEEecC--CeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCccc
Q psy14532         81 VQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGA--PFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQL  153 (258)
Q Consensus        81 ~~----~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~  153 (258)
                      +.    ...|.|.|+|.+.|..+...+....|.+...  .+-..+..+.+..|+.+.|.|.- .+.|.+.+.|.|+++.+
T Consensus        94 ~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl  173 (1281)
T KOG4222|consen   94 LAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPL  173 (1281)
T ss_pred             cccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcc
Confidence            41    1338999999999999887766666666543  33344556778889999999986 67889999999999988


Q ss_pred             C--CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccC
Q psy14532        154 P--LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG  231 (258)
Q Consensus       154 ~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  231 (258)
                      .  ......+...+.|.|.++.. .|.|.|.|.+.|..+...+...+|.|..+|.+...+....+..|..+.+.|.+ .+
T Consensus       174 ~~~~~~~~~lisgG~LlIsnvrk-sD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v-~G  251 (1281)
T KOG4222|consen  174 DHYDVPIIALISGGNLLISNVRK-SDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRV-GG  251 (1281)
T ss_pred             ccccceeEEEecCCcEEEecccc-CCCceeeeeecccccccccccceeeeccCCccccccccceeeccccccccccc-CC
Confidence            7  33455567889999999998 99999999999999999999999999999999988888889999999999999 89


Q ss_pred             CCCceeEEEECCEeccccccce
Q psy14532        232 DPPLTISWLKNGLPILSAMGVG  253 (258)
Q Consensus       232 ~p~~~~~W~~~g~~l~~~~~~~  253 (258)
                      .|.+.+.|.+++..+.-..+.+
T Consensus       252 dP~P~Vrwkk~~~~~P~~ry~i  273 (1281)
T KOG4222|consen  252 DPQPTVRWKKDDPSLPRSRYSI  273 (1281)
T ss_pred             CCCCceeeeccCCCCCccceee
Confidence            9999999999888777665443

>KOG4222|consensus

Probab=99.94  E-value=8.9e-26  Score=185.78  Aligned_cols=222  Identities=28%  Similarity=0.494  Sum_probs=186.5

Q ss_pred             cceeeceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      .|.+.+.++.+..|+.++|.|.- .++|.+.+.|.|+|+++..+....                 ..+...|.|.|.|+ 
T Consensus       133 dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~-----------------~~lisgG~LlIsnv-  194 (1281)
T KOG4222|consen  133 DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI-----------------IALISGGNLLISNV-  194 (1281)
T ss_pred             hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccccee-----------------EEEecCCcEEEecc-
Confidence            35667888999999999999975 567889999999999887442222                 22345789999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV  161 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~  161 (258)
                      +..|+|.|.|++.|..|...+....|.|..+|.+. .+....+..|..+.+.|.+.|.|.+.+.|.+++..+........
T Consensus       195 rksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~  274 (1281)
T KOG4222|consen  195 RKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSIL  274 (1281)
T ss_pred             ccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeee
Confidence            99999999999999999888789999999887544 46677888999999999999999999999998777765544434


Q ss_pred             ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEE
Q psy14532        162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK  241 (258)
Q Consensus       162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  241 (258)
                      ....+|.|.++.. .|.|.|.|.+.|..+ .......+.|.++|.+...+....+..|..++|.|.+ .+.|.+.+.|.+
T Consensus       275 ~d~qtl~i~r~tp-~deg~y~C~a~n~vG-~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~-~gnP~PavfW~k  351 (1281)
T KOG4222|consen  275 DDTQTLRIDRVTP-TDEGTYVCPAENLVG-GLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCET-LGNPPPAVFWLK  351 (1281)
T ss_pred             eccccccccccCC-Ccccceeeecccccc-ccccccceEEecCcccccccCccccccCceEEeeeec-CCCCCcceEEec
Confidence            4448899999997 999999999999988 4557778899999999988888899999999999999 699999999999


Q ss_pred             CCEec
Q psy14532        242 NGLPI  246 (258)
Q Consensus       242 ~g~~l  246 (258)
                      .|...
T Consensus       352 eg~q~  356 (1281)
T KOG4222|consen  352 EGSQD  356 (1281)
T ss_pred             cCcce
Confidence            76544

>KOG4221|consensus

Probab=99.93  E-value=5.3e-24  Score=176.46  Aligned_cols=226  Identities=29%  Similarity=0.495  Sum_probs=181.9

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .|..++.+.  .+|..+.|.|.....  +.+.+.|.|||..+......                 +..+..|++|.|.++
T Consensus        43 ~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~-----------------~~~~LsNgSl~i~~v  103 (1381)
T KOG4221|consen   43 QFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDD-----------------RRQLLSNGSLYISSV  103 (1381)
T ss_pred             eEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhh-----------------HHhhccCCceeEeee
Confidence            455666654  899999999986543  46789999998776554222                 223446999999998


Q ss_pred             ccC-----CCceEEEEEEEeC-CcceeeceEEEEEecCCe-eccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKD-----HDRGVYWCTATNK-QGRSSSQNVHISVTGAPF-VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       ..     .|+|.|.|.++.. .+..-+..+.|.+...+. ........+..|+++.|.|.+.+.+-+.+.|.++..++.
T Consensus       104 -~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~  182 (1381)
T KOG4221|consen  104 -LASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP  182 (1381)
T ss_pred             -cccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccccccc
Confidence             66     7899999999986 455556778888876653 334667788999999999999998888999999999888


Q ss_pred             CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc------ccCCCCCccCCCCeeeEEEEe
Q psy14532        155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI------APFEFQPDLHSGDRAGVQCLV  228 (258)
Q Consensus       155 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~  228 (258)
                      ...++....++.|.|..+.. .|.|.|.|.|.+......+....|.+...|..      ...+....+..|+.+.|.|.+
T Consensus       183 ~~~r~i~lpsG~L~I~~~qp-~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv  261 (1381)
T KOG4221|consen  183 LDSRVIVLPSGALEISGLQP-SDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV  261 (1381)
T ss_pred             CCCcEEEcCCCcEEeccccc-CCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe
Confidence            88888889999999999997 99999999999988666678888888744432      223556678899999999999


Q ss_pred             ccCCCCceeEEEECCEecccccc
Q psy14532        229 TKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       229 ~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                       .+.|.|.|.|.+||..|.-.+.
T Consensus       262 -s~~p~p~v~Wlrng~~i~~ds~  283 (1381)
T KOG4221|consen  262 -SGVPKPSVKWLRNGEKISVDSY  283 (1381)
T ss_pred             -cCCCCCceEEeeCCeeeeecce
Confidence             7999999999999999987753

>KOG4194|consensus

Probab=99.92  E-value=5.9e-24  Score=165.47  Aligned_cols=208  Identities=27%  Similarity=0.447  Sum_probs=157.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEe-CcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .|.|...|.++++..|+.+.|.|.++|.|.|++.|.|+|.. .+.......+                .+-.+..+.|.|
T Consensus       612 ~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~----------------Vmpedd~f~Itn  675 (873)
T KOG4194|consen  612 APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLH----------------VMPEDDVFFITN  675 (873)
T ss_pred             cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheee----------------ecCCCCEEEEec
Confidence            58999999999999999999999999999999999997643 4333221222                222456789999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCcc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRR  158 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~~  158 (258)
                      + +.+|+|.|+|.+.+..|+.+ ..+.|.|...|.. .+..+..+..|+++.|.|.+.+.|. |.+.|+|+++++....+
T Consensus       676 v-k~eD~GiYtC~A~n~AG~is-anAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r  753 (873)
T KOG4194|consen  676 V-KIEDQGIYTCTAQNVAGQIS-ANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER  753 (873)
T ss_pred             c-cccccceeEEeeecccccee-eceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence            9 99999999999999999998 9999999988654 4567788999999999999999776 99999999999877766


Q ss_pred             eEEecCC-eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC-CCCccCCCCeeeEEEEec
Q psy14532        159 QKVFPNG-TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE-FQPDLHSGDRAGVQCLVT  229 (258)
Q Consensus       159 ~~~~~~~-~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~  229 (258)
                      .....+. .|.+.+... +|+|.|+|+..+..+ .....+.+.+...+.-.... ....+..-..+.+.|.+.
T Consensus       754 h~f~d~dQllvv~~~~~-~daG~yTcem~~~~~-~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~vd  824 (873)
T KOG4194|consen  754 HTFPDGDQLLVVKENLV-EDAGIYTCEMSNTLG-TERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSVD  824 (873)
T ss_pred             ccCCCCCeEEEEEehhh-hhcceEEEEEEeecc-ceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeeec
Confidence            6554444 466777776 999999999999887 44455666655544322221 111222233456667663

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.91  E-value=9e-23  Score=146.87  Aligned_cols=166  Identities=18%  Similarity=0.286  Sum_probs=116.7

Q ss_pred             ceeeeecCCCceEEEEEEeec-----------CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN-----------PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +....+.+|++|.|.|.+.+.           ..+.+.|+|++..........+.       .............+++|.
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~-------~~~~i~~~~~~~r~~~L~  101 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGART-------KIKKITHNEIGDRSENLW  101 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcc-------ccccccccceecCCCeEE
Confidence            456778999999999997653           34589999987542111000000       000000011112356899


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-----ccCceEEEEeCCcc
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQ  152 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~  152 (258)
                      |.++ +.+|+|.|.|.+.+..+... ..+.|.|...+     ....+.+|+.+.|.|.+.+     .|.|.++|++++..
T Consensus       102 I~~v-~~~DsG~Y~C~a~N~~~~~~-~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~  174 (227)
T PHA02826        102 IGNV-INIDEGIYICTISSGNICEE-STIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI  174 (227)
T ss_pred             ECCC-ChHHCEEEEEEEEECCcceE-EEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE
Confidence            9999 99999999999999776655 77777775322     2345678999999999753     35789999999998


Q ss_pred             cCCCcceEEec-CCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        153 LPLNRRQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       153 ~~~~~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +....+..+.. .++|.|.+++. +|+|.|+|.+....
T Consensus       175 l~~~~r~~~~~~~~~L~I~~V~~-~DsG~YtC~a~~~~  211 (227)
T PHA02826        175 VLYTDRIQLRNNNSTLVIKSATH-DDSGIYTCNLRFNK  211 (227)
T ss_pred             CCCCCCEEEeCCCCEEEECcCCH-HhCEEEEEEEEEeE
Confidence            87666555543 35799999998 99999999999754

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.85  E-value=1.3e-19  Score=138.67  Aligned_cols=159  Identities=21%  Similarity=0.322  Sum_probs=111.7

Q ss_pred             ceeeeecCCCceEEEEEE-----eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          9 FIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +.+..+.+|+.+.|.|..     .+.+.+.++|++++. +..    .+                .....++.|.|.++ +
T Consensus       128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~----~r----------------~~~~~~~~L~i~~v-~  185 (326)
T PHA02785        128 SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN----KR----------------LKQRTPGIITIEDV-R  185 (326)
T ss_pred             eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC----cc----------------eEecCCCeEEEeec-C
Confidence            344567899999999972     345778999987542 211    11                11223568999999 9


Q ss_pred             CCCceEEEEEEEeCCccee---eceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccC---ceEEEEeCCcccC
Q psy14532         84 DHDRGVYWCTATNKQGRSS---SQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPI---ESITWQKGVQQLP  154 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~i~W~~~~~~~~  154 (258)
                      .+|+|.|+|.+.+..+...   +..+.|.|..   +|.+..+....+..|+.+.|.|.+.+.|.   +.+.|++|+..+.
T Consensus       186 ~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~  265 (326)
T PHA02785        186 KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE  265 (326)
T ss_pred             hhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence            9999999999999776542   2344565542   33333345566778999999999998775   4899999998764


Q ss_pred             CCc-----ceEE-----------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        155 LNR-----RQKV-----------FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       155 ~~~-----~~~~-----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ...     +...           ...+.|.|.+++. +|.|.|+|.|.|..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~-~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKE-EDATTFTCMAFTIPS  316 (326)
T ss_pred             CcCCCCceeEEEecCccccccceeeeEEEEECCcch-hcCeeeEEEEEeccC
Confidence            321     1111           1134699999987 999999999999764

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.77  E-value=6.2e-18  Score=104.34  Aligned_cols=87  Identities=29%  Similarity=0.516  Sum_probs=72.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+...   ....                 ..++.|.|.++
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---~~~~-----------------~~~~~L~I~~v   60 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---AEIS-----------------MSGAVLKIFNI   60 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---CEEe-----------------cCCCEEEECcC
Confidence            799999999999999999999999999999999999998765432   1111                 12457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       +.+|+|.|+|.+.|..|... ..+.|.|
T Consensus        61 -~~~D~G~Y~C~A~N~~G~~~-~~~~l~V   87 (88)
T cd05851          61 -QPEDEGTYECEAENIKGKDK-HQARVYV   87 (88)
T ss_pred             -ChhhCEEEEEEEEcCCCceE-EEEEEEE
Confidence             99999999999999999876 6677765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.76  E-value=1.1e-17  Score=105.17  Aligned_cols=95  Identities=22%  Similarity=0.295  Sum_probs=78.7

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |.|...+.++.+.+|+.+.|.|.+.|.|.+.+.|+|++..+...   .++.+.             .......|.|.++ 
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~---~~~~~~-------------~~~~~s~L~I~~~-   63 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG---EGIKIE-------------NTENSSKLTITEG-   63 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC---CcEEEE-------------ecCCeeEEEECCC-
Confidence            78888999999999999999999999999999999999988644   122111             0012357999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      ...|+|.|+|.+.|..|... ..+.|.|...|.
T Consensus        64 ~~~D~G~Ytc~a~N~~G~~~-~~~~l~V~~~P~   95 (98)
T cd05762          64 QQEHCGCYTLEVENKLGSRQ-AQVNLTVVDKPD   95 (98)
T ss_pred             ChhhCEEEEEEEEcCCCcee-EEEEEEEecCCC
Confidence            99999999999999999988 789999987763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.70  E-value=2.9e-16  Score=98.04  Aligned_cols=89  Identities=20%  Similarity=0.412  Sum_probs=70.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||+|...|.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+...   .++.+.             .....++|.|.++
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~---~~~~~~-------------~~~~~~~L~i~~~   66 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS---QRHQIT-------------STEYKSTFEISKV   66 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC---CcEEEE-------------EcCCeeEEEECCC
Confidence            789999999999999999999999999999999999998876543   111111             0012357999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHI  108 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l  108 (258)
                       ..+|+|.|.|.+.|..|... ..+.|
T Consensus        67 -~~~D~G~Y~C~a~N~~G~~~-~~~~l   91 (92)
T cd05747          67 -QMSDEGNYTVVVENSEGKQE-AQFTL   91 (92)
T ss_pred             -CcccCEeEEEEEEcCCCCEe-EEEEe
Confidence             99999999999999998766 55544

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.68  E-value=7.9e-16  Score=95.29  Aligned_cols=87  Identities=26%  Similarity=0.459  Sum_probs=70.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.+...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+...   ..                 ....+++|.|.++
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~-----------------~~~~~~~L~i~~v   60 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AE-----------------ISMSGAVLKIPNI   60 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---cE-----------------EEEeCCEEEECCC
Confidence            577788889999999999999999999999999999987644322   00                 0124678999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       +.+|+|.|+|.+.|..|... ..+.|.|
T Consensus        61 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   87 (88)
T cd04968          61 -QFEDEGTYECEAENIKGKDT-HQGRIYV   87 (88)
T ss_pred             -CcccCEEEEEEEEECCCcEE-EEEEEEE
Confidence             99999999999999998876 6677765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.68  E-value=5.2e-16  Score=96.80  Aligned_cols=90  Identities=32%  Similarity=0.618  Sum_probs=73.5

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |+|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+...   .++.+.             ......+|.|.++ 
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~---~~~~~~-------------~~~~~~~L~I~~v-   63 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS---QRYQIE-------------SDGGSSSLTIKNV-   63 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS---SSEEEE-------------EETTEEEEEESSE-
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee---eeeeee-------------cccceeEEccCCC-
Confidence            78889999999999999999999999999999999999888764   222221             0113557999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ..+|+|.|+|.+.+..+... ..+.|.|
T Consensus        64 ~~~D~G~Y~C~~~n~~g~~~-~~~~l~V   90 (90)
T PF07679_consen   64 TREDAGTYTCVASNSSGEAT-ASVNLTV   90 (90)
T ss_dssp             SGGGSEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             ChhhCEEEEEEEEECCCEEE-EEEEEEC
Confidence            99999999999999987776 6677665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.68  E-value=7e-16  Score=94.67  Aligned_cols=84  Identities=30%  Similarity=0.561  Sum_probs=68.7

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      +...|.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+...   .+..                 ..++.|.|.++ ..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~---~~~~-----------------~~~~~L~i~~~-~~   60 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE---NRIE-----------------VEAGDLRITKL-SL   60 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC---CeEE-----------------EeCCEEEEeeC-CH
Confidence            456788899999999999999999999999999999877543   1111                 13567999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|+|.|+|.+.|..|... .++.|.|
T Consensus        61 ~D~G~Y~C~a~N~~G~~~-~~~~l~V   85 (85)
T cd05728          61 SDSGMYQCVAENKHGTIY-ASAELAV   85 (85)
T ss_pred             HHCEEEEEEEECCCCeEE-EEEEEEC
Confidence            999999999999998776 6666653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.67  E-value=1.2e-15  Score=95.88  Aligned_cols=92  Identities=28%  Similarity=0.527  Sum_probs=70.8

Q ss_pred             CCcceeec--eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKF--IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ||.|....  .+..+..|+++.|.|.+.|.|.+.+.|++++..+....  .++...               .....|.|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~--~~~~~~---------------~~~~~L~I~   63 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE--EKYSFN---------------EDGSEMTIL   63 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC--CEEEEe---------------CCCCEEEEC
Confidence            67776544  44578999999999999999999999999998775431  111110               113469999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      ++ ..+|+|.|+|.+.|..|... ..+.|.|..
T Consensus        64 ~v-~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~~   94 (95)
T cd05730          64 DV-DKLDEAEYTCIAENKAGEQE-AEIHLKVFA   94 (95)
T ss_pred             CC-ChhhCEEEEEEEEcCCCeEE-EEEEEEEEe
Confidence            99 99999999999999999876 788888764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.66  E-value=2.5e-15  Score=108.46  Aligned_cols=124  Identities=25%  Similarity=0.377  Sum_probs=88.3

Q ss_pred             CCcceecCCcEEEEeeeCccc-----------CceEEEEeCCccc--CC-Ccc--------eE-EecCCeEEEEecccCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP-----------IESITWQKGVQQL--PL-NRR--------QK-VFPNGTLLIENVQKDH  176 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~-----------~~~i~W~~~~~~~--~~-~~~--------~~-~~~~~~l~i~~~~~~~  176 (258)
                      ....+.+|+.+.|.|.+.+.+           ...+.|++++...  .. +.+        .. ...++.|.|.++.. +
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~-~  108 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN-I  108 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-H
Confidence            345678999999999986643           3489999986431  00 000        01 12356899999997 9


Q ss_pred             CCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccC----CCCceeEEEECCEecccccc
Q psy14532        177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG----DPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       177 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~g~~l~~~~~  251 (258)
                      |+|.|+|.|.|..+. ....+.|.|..++      ....+.+|+.+.|.|.+.++    .|.+.+.|+++|+.|..+..
T Consensus       109 DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r  180 (227)
T PHA02826        109 DEGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR  180 (227)
T ss_pred             HCEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence            999999999997653 4455666664321      23456789999999998544    45789999999999976544

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.66  E-value=1.7e-15  Score=90.96  Aligned_cols=75  Identities=33%  Similarity=0.748  Sum_probs=60.2

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.|.++|+|+|..+.......++                 ...+++|.|.++ +.+|+|.|.|.+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~-----------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N   62 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRR-----------------HVSSGALILTDV-QPSDTAVYQCEARN   62 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceE-----------------EeeCCEEEECCC-ChhhCEEEEEEEEC
Confidence            789999999999999999999999877643211111                 123578999999 99999999999999


Q ss_pred             CCcceeeceEEEEE
Q psy14532         97 KQGRSSSQNVHISV  110 (258)
Q Consensus        97 ~~~~~~~~~~~l~v  110 (258)
                      ..|... ..+.|.|
T Consensus        63 ~~G~~~-~~~~l~V   75 (76)
T cd05867          63 RHGNLL-ANAHVHV   75 (76)
T ss_pred             CCCeEE-EEEEEEE
Confidence            998876 6777765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=1e-15  Score=91.45  Aligned_cols=74  Identities=36%  Similarity=0.627  Sum_probs=60.0

Q ss_pred             CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      +|+++.|.|.+.+.|.|.+.|+|++..+...   .+.                .+..+++|.|.++ +.+|+|.|+|.+.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~---~~~----------------~~~~~~~L~I~~v-~~~D~G~Y~C~A~   60 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD---RRH----------------LVLSSGTLRISRV-ALHDQGQYECQAV   60 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC---CCe----------------EEccCCeEEEeeC-CHHhCEEEEEEEE
Confidence            6999999999999999999999999877543   111                1123568999999 9999999999999


Q ss_pred             eCCcceeeceEEEEE
Q psy14532         96 NKQGRSSSQNVHISV  110 (258)
Q Consensus        96 ~~~~~~~~~~~~l~v  110 (258)
                      |..|... ..+.|.|
T Consensus        61 N~~G~~~-~~~~L~V   74 (74)
T cd05745          61 NIVGSQR-TVAQLTV   74 (74)
T ss_pred             eCCCcee-EEEEEeC
Confidence            9998876 6666653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.65  E-value=2.3e-15  Score=94.61  Aligned_cols=87  Identities=26%  Similarity=0.316  Sum_probs=72.9

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+.   ..+.|.|.++.. +|.|.|+|.+.|..|. ..
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~-~D~G~Ytc~a~N~~G~-~~   83 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQ-EHCGCYTLEVENKLGS-RQ   83 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCCh-hhCEEEEEEEEcCCCc-ee
Confidence            456678899999999999999999999999999988766555543   245799999997 9999999999999994 55


Q ss_pred             ceEEEEeecCCc
Q psy14532        195 QNVHISVTVPPK  206 (258)
Q Consensus       195 ~~~~l~v~~~p~  206 (258)
                      ..+.|.|...|.
T Consensus        84 ~~~~l~V~~~P~   95 (98)
T cd05762          84 AQVNLTVVDKPD   95 (98)
T ss_pred             EEEEEEEecCCC
Confidence            678888887764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=1.3e-15  Score=90.99  Aligned_cols=73  Identities=37%  Similarity=0.674  Sum_probs=61.8

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      +|+.+.|.|.+.|.|.|.++|++++..+....+..+..++.|.|.++.. +|.|.|+|.|.|..|. .+..+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVAL-HDQGQYECQAVNIVGS-QRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCH-HhCEEEEEEEEeCCCc-eeEEEEEe
Confidence            5889999999999999999999999888766666666778999999997 9999999999999884 44455554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.65  E-value=4.8e-15  Score=92.57  Aligned_cols=89  Identities=27%  Similarity=0.459  Sum_probs=67.5

Q ss_pred             CCcceeeceeeeec---CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQ---PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .|.|+..|.++.+.   +|+++.|.|.+.|.|.+.++|+|++..+..... .++                 ...+++|.|
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~-~~~-----------------~~~~g~L~i   62 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESD-YRY-----------------SLIDGNLII   62 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCC-ceE-----------------EeeCCeEEE
Confidence            37888888887654   478999999999999999999999988754311 111                 123568999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHI  108 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  108 (258)
                      .++....|+|.|+|.+.|..|...+..+.|
T Consensus        63 ~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          63 SNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             ccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            887236899999999999998776555544

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.65  E-value=1.5e-15  Score=89.93  Aligned_cols=73  Identities=29%  Similarity=0.570  Sum_probs=59.0

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.+.+.|+|++..+...   .++                .+..+++|.|.++ +.+|+|.|.|.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~---~r~----------------~~~~~g~L~I~~v-~~~D~G~Y~C~A~N   60 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN---SRI----------------SIWDDGSLEILNI-TKLDEGSYTCFAEN   60 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccC---CCE----------------EEcCCCEEEECcC-ChhHCEEEEEEEEC
Confidence            789999999999999999999998766433   222                2234678999999 99999999999999


Q ss_pred             CCcceeeceEEEEE
Q psy14532         97 KQGRSSSQNVHISV  110 (258)
Q Consensus        97 ~~~~~~~~~~~l~v  110 (258)
                      ..|... ..+.|+|
T Consensus        61 ~~G~~~-~~~~l~~   73 (73)
T cd05852          61 NRGKAN-STGVLSV   73 (73)
T ss_pred             CCCcee-EEEEEEC
Confidence            998877 6666653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.64  E-value=3.2e-15  Score=91.65  Aligned_cols=83  Identities=22%  Similarity=0.422  Sum_probs=64.6

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      .+.+.+|+++.|.|.+.|.|.|.+.|+|++.++....  .++.+.             .....++|.|.++ ..+|+|.|
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~--~r~~~~-------------~~~~~~~L~I~~~-~~~D~G~Y   67 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE--GRVRVE-------------SYKDLSSFVIEGA-EREDEGVY   67 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC--CeEEEE-------------EcCCeEEEEECCC-ccCcCEEE
Confidence            4678899999999999999999999999998876431  122111             0011357999999 99999999


Q ss_pred             EEEEEeCCcceeeceEEEEE
Q psy14532         91 WCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|.+.|..|... ..+.|.|
T Consensus        68 ~c~a~N~~G~~~-~~~~l~V   86 (86)
T cd05894          68 TITVTNPVGEDH-ASLFVKV   86 (86)
T ss_pred             EEEEEeCCCcEE-EEEEEEC
Confidence            999999999876 6666654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.64  E-value=4.9e-15  Score=93.25  Aligned_cols=89  Identities=19%  Similarity=0.303  Sum_probs=66.3

Q ss_pred             eeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ..+.+.+|+++.|.|.+.+ .|.|.+.|+|+|.++....   ...+...        .........+|.|.++ ..+|+|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~---~~~~~~~--------~~~~~~~~~~L~i~~v-~~~D~G   78 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL---TEIVTSE--------NESEYRYVSELKLVRL-KESEAG   78 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc---ceeEEEe--------ccCcceEEEEEEEeec-CHhhCe
Confidence            4577899999999999999 8999999999999886431   1110000        0000012357999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEe
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .|+|.|.|..|... ..+.|.|.
T Consensus        79 ~Ytc~A~N~~G~~~-~t~~L~V~  100 (101)
T cd04975          79 TYTFLASNSDASKS-LTFELYVN  100 (101)
T ss_pred             eEEEEEECCCccEE-EEEEEEEE
Confidence            99999999999776 77777764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.63  E-value=9.6e-15  Score=91.26  Aligned_cols=90  Identities=27%  Similarity=0.458  Sum_probs=68.6

Q ss_pred             CCcceeeceeeeecCC---CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .|.|...|.++.+.+|   ++++|.|.+.+.|.+.++|+++|..+..... .++                 ...+++|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~-~~~-----------------~~~~g~L~I   62 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE-SRY-----------------TLVAGNLVI   62 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC-ceE-----------------EEECCeEEE
Confidence            3778888888877666   5799999999999999999999988753311 111                 113568999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .++....|+|.|.|.+.|..|...+..+.|.
T Consensus        63 ~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          63 NNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             ccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            8862468999999999999998776666553

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.63  E-value=6.5e-15  Score=93.77  Aligned_cols=94  Identities=33%  Similarity=0.672  Sum_probs=69.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI---   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---   78 (258)
                      ||.|...+.++.+.+|+++.|.|.+.+.|.+.+.|+|+|..+.........              +.....++.+.+   
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--------------~~~~~~~~~~~~~~i   66 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRS--------------HRIVLPSGSLFFLRV   66 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCc--------------ceEEecCCcEEEEEe
Confidence            689999999999999999999999999999999999999887652110000              011122333322   


Q ss_pred             --eecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         79 --ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        79 --~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                        .++ ..+|+|.|+|.+.|..|...+..+.|.|
T Consensus        67 ~~~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          67 VHGRK-GRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             eccCC-CcCcCEEEEEEEEccccceecceEEEEe
Confidence              223 5789999999999999986657777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.63  E-value=8.9e-15  Score=90.40  Aligned_cols=85  Identities=25%  Similarity=0.459  Sum_probs=66.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeC---CcEEEee
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN---GTLLIEN   80 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~   80 (258)
                      +...+.++.+.+|+++.|.|.+.|.|. .+.|+++ +..+...   .++.                +..+   .+|.|.+
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~---~r~~----------------~~~~g~~~~L~I~~   62 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS---QRVV----------------VQKEGVRSRLTIYN   62 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC---CCEE----------------EEeCCCeeEEEEec
Confidence            456788899999999999999999887 8999984 6555432   1111                1122   3799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      + ..+|+|.|+|.+.|..|....+++.|.+
T Consensus        63 v-~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          63 A-NIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             C-ChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            9 9999999999999999887657777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.63  E-value=5.8e-15  Score=91.42  Aligned_cols=87  Identities=29%  Similarity=0.417  Sum_probs=68.3

Q ss_pred             Ccce--eeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          3 PQLI--YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         3 p~~~--~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      |.|.  ..+.++.+.+|++++|.|.+.+. .+.+.|+|++..+...    +..+               ...+++|.|.+
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~----~~~~---------------~~~~~~L~I~~   61 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP----RLQL---------------SNDNRTLTFNN   61 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC----CEEE---------------eCCCCEEEECc
Confidence            5553  34456789999999999999999 8999999998876432    1111               11245799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      + +.+|+|.|.|.+.|..|...+..+.|.|
T Consensus        62 v-~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          62 V-TRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             C-ChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            9 9999999999999999987767777776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.63  E-value=2.4e-15  Score=89.04  Aligned_cols=72  Identities=31%  Similarity=0.574  Sum_probs=61.1

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      |+.+.|.|.+.|.|.|.++|++++..+....++.+..+++|.|.++.. +|.|.|+|.|.|..|+ ......|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITK-LDEGSYTCFAENNRGK-ANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCCh-hHCEEEEEEEECCCCc-eeEEEEEE
Confidence            678999999999999999999999877766777777888999999997 9999999999999884 33444443

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.63  E-value=8.4e-15  Score=91.43  Aligned_cols=91  Identities=22%  Similarity=0.327  Sum_probs=65.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCC-CeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      +...|.+..+.+|+++.|.|.+.|.|. +.+.|++ ++..+....  .++.+..            .....++|.|.++ 
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~--~r~~v~~------------~~~~~~~L~I~~v-   67 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQ--QRISVVR------------NDDYSSTLTIYNA-   67 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccC--CeEEEEe------------CCCCceEEEEecc-
Confidence            456777888999999999999999985 6999998 676554321  1111100            0001257999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +.+|+|.|+|.|.|..+.....++.|.|
T Consensus        68 ~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          68 NIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             ChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            9999999999999997444337777776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.63  E-value=4.2e-15  Score=85.82  Aligned_cols=65  Identities=22%  Similarity=0.417  Sum_probs=53.7

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|.++|+|+|..+...                        ...+.|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------------------------~~~~~L~i~~v-~~~D~G~YtC~a~N~~g   55 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK------------------------HSQHSLQIKDV-TEASAGTYTLVLWNSAA   55 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc------------------------CCcCEEEECCC-CHHHCEEEEEEEEECCc
Confidence            579999999999999999999888532                        02458999999 99999999999999988


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.+.+
T Consensus        56 ~~~-~~~~~~l   65 (67)
T cd05863          56 GLE-KRISLEL   65 (67)
T ss_pred             cEE-EEEEEEE
Confidence            765 5555554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.62  E-value=6.8e-15  Score=91.41  Aligned_cols=86  Identities=20%  Similarity=0.432  Sum_probs=65.8

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+.....   ...             .......+|.|.++ ..+
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~---~~~-------------~~~~~~~~L~I~~v-~~~   66 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRT---DTL-------------ETTVDIYNLQLSNI-TSE   66 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCcc---EEE-------------EecCCEEEEEEecC-Ccc
Confidence            4556677799999999999999999999999999987643311   000             01112347999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEE
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      |.|.|+|.+.|..|... ..+.|.
T Consensus        67 D~g~Y~C~A~N~~G~~~-~~~~L~   89 (90)
T cd04972          67 TQTTVTCTAENPVGQAN-VSVQVT   89 (90)
T ss_pred             cCEEEEEEEECCCCcee-EEEEEe
Confidence            99999999999998876 666654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.62  E-value=7e-15  Score=88.07  Aligned_cols=75  Identities=31%  Similarity=0.593  Sum_probs=59.2

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.|.|.|+|.|+|+|.++........                 .....+.|.|.++ +..|+|.|+|.+.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~-----------------~~~~~~~l~i~~v-~~~D~G~Y~C~A~N   62 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS-----------------RKVDGDTIIFSKV-QERSSAVYQCNASN   62 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCce-----------------EEecCCEEEECCC-CHhhCEEEEEEEEc
Confidence            78999999999999999999999988753311000                 0112457889999 99999999999999


Q ss_pred             CCcceeeceEEEEE
Q psy14532         97 KQGRSSSQNVHISV  110 (258)
Q Consensus        97 ~~~~~~~~~~~l~v  110 (258)
                      ..|... .++.|.|
T Consensus        63 ~~G~~~-~~~~l~v   75 (76)
T cd05868          63 EYGYLL-ANAFVNV   75 (76)
T ss_pred             CCCEEE-EEEEEEe
Confidence            999887 7777766

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.62  E-value=6.7e-15  Score=92.93  Aligned_cols=93  Identities=25%  Similarity=0.510  Sum_probs=66.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCc--cccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDR--HENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|+|.  +..+....  ...++.+.             .....++|.
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-------------~~~~~~~L~   67 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-------------GQHGESSLH   67 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe-------------ecCCeeEEE
Confidence            57775 47789999999999999999999999999994  33322110  00111110             001235799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      |.++ +.+|+|.|+|.+.|..|... .++.|.|
T Consensus        68 I~~v-~~~D~G~Y~C~A~N~~G~~~-~~~~l~~   98 (98)
T cd05870          68 IKDV-KLSDSGRYDCEAASRIGGHQ-KSMYLDI   98 (98)
T ss_pred             EeeC-CcCCCEEEEEEEeccCCcce-eEEEEeC
Confidence            9999 99999999999999999776 6666653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.62  E-value=6e-15  Score=92.01  Aligned_cols=84  Identities=26%  Similarity=0.402  Sum_probs=63.2

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      |..+.+.+|+++.|.|.+.+.|.|.+.|+|++..+...   .++.+..            ......+|.|.++ ..+|+|
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~---~~~~~~~------------~~~~~~~L~I~~v-~~~D~G   71 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS---DHYNVKV------------EQGKYASLTIKGV-SSEDSG   71 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC---CCEEEEE------------cCCCEEEEEEccC-ChhhCE
Confidence            45578899999999999999999999999999887543   1111110            0001236999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .|+|.+.|..|... ..+.|.
T Consensus        72 ~Y~C~a~N~~G~~~-~~~~v~   91 (92)
T cd05737          72 KYGIVVKNKYGGET-VDVTVS   91 (92)
T ss_pred             EEEEEEEECCCcce-EEEEEe
Confidence            99999999988776 555554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.62  E-value=9.9e-15  Score=90.11  Aligned_cols=83  Identities=33%  Similarity=0.637  Sum_probs=64.9

Q ss_pred             eceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .|.+..+.+|+++.|.|.+ .+.|.+.+.|+|++..+....  .+                .....+++|.|.++ +.+|
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~--~~----------------~~~~~~~~L~I~~~-~~~D   62 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN--ER----------------VRIVDDGNLLIAEA-RKSD   62 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCC--CC----------------EEEccCCEEEEeEC-Cccc
Confidence            4567888999999999998 678899999999988765431  11                11223568999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEE
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      +|.|+|.+.|..|...+..+.|.
T Consensus        63 ~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          63 EGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             CEEEEEEEEeccCceeeeeEEEE
Confidence            99999999999887665666554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.61  E-value=1.3e-14  Score=90.26  Aligned_cols=89  Identities=26%  Similarity=0.447  Sum_probs=67.1

Q ss_pred             CCcceeeceeeeecCCC---ceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGP---PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~---~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.|...|.++.+.++.   .+.|.|.+.|.|.+.+.|+|++..+....  .++                 ...++.|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~--~~~-----------------~~~~g~L~I   61 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTN--DRY-----------------SMVGGNLVI   61 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCC--CeE-----------------EEECCEEEE
Confidence            47788888877665544   89999999999999999999988764321  111                 123578999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .++....|+|.|.|.+.|..|...+..++|.
T Consensus        62 ~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          62 NNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            8872368999999999999998765666553

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=9.8e-15  Score=92.00  Aligned_cols=94  Identities=24%  Similarity=0.512  Sum_probs=68.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCcc--ccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRH--ENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.|...+....+..|++++|.|.+.|.|.|.++|++++..+.....  ..++.+.             .....++|.|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~L~I~   68 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR-------------SHARVSSLTLK   68 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE-------------cCccEEEEEEe
Confidence            58887777766677799999999999999999999998776543210  0111100             00112479999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ++ +.+|+|.|+|.+.|..|... ..+.|.|
T Consensus        69 ~v-~~~D~G~Y~C~A~N~~G~~~-~~~~l~v   97 (97)
T cd05869          69 YI-QYTDAGEYLCTASNTIGQDS-QSMYLEV   97 (97)
T ss_pred             cC-ccCcCEEEEEEEecCCCCee-EEEEEEC
Confidence            99 99999999999999999877 6666654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.61  E-value=1.5e-14  Score=90.87  Aligned_cols=89  Identities=36%  Similarity=0.623  Sum_probs=67.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc--
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ--   82 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--   82 (258)
                      |...|.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+..... .                +..+..+++|.|.++.  
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~-~----------------~~~~~~~~~l~i~~v~~~   64 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSD-E----------------RRQQLPNGSLLITSVVHS   64 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccC-c----------------ceEEccCCeEEEeeeecc
Confidence            45677888899999999999999999999999999988764311 0                0112245667777652  


Q ss_pred             --cCCCceEEEEEEEeC-CcceeeceEEEEE
Q psy14532         83 --KDHDRGVYWCTATNK-QGRSSSQNVHISV  110 (258)
Q Consensus        83 --~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v  110 (258)
                        ...|.|.|.|.+.|. .|...+..+.|.|
T Consensus        65 ~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          65 KHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             CCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence              368999999999999 8877667776654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.60  E-value=1.8e-14  Score=88.16  Aligned_cols=83  Identities=29%  Similarity=0.506  Sum_probs=61.8

Q ss_pred             CceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      +.+.|.|.+.+.|.+  .+.|++++..+.......++...            ......++|.|.++ +..|+|.|+|.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~------------~~~~~~~~L~I~~v-~~~D~G~YtC~A~   67 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM------------EVKETIGDLVIVNA-QLSHAGTYTCTAQ   67 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE------------EecceEeEEEEccC-ChhhCeEEEEEEe
Confidence            478999999998876  68999999887543211111100            01112468999999 9999999999999


Q ss_pred             eCCcceeeceEEEEEecCC
Q psy14532         96 NKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~  114 (258)
                      +..|... ..+.|.|..+|
T Consensus        68 n~~g~~~-~~~~L~V~~~P   85 (85)
T cd05854          68 TVVDSAS-ASATLVVRGPP   85 (85)
T ss_pred             cCCCCEE-EEEEEEEECCC
Confidence            9998887 88899988764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.60  E-value=1e-14  Score=86.61  Aligned_cols=75  Identities=28%  Similarity=0.436  Sum_probs=55.4

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      |.|.|.+.|.|.|.+.|+|++..+....  .++.+...            .....+|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~--~r~~~~~~------------~~g~~~L~I~~~-~~~D~G~Y~C~A~N~~G   65 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNT--DRISLYQD------------NSGRVTLLIKNV-NKKDAGWYTVSAVNEAG   65 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCC--CeEEEEEc------------CCCcEEEEECCC-ChhhCEEEEEEEEcCcC
Confidence            5799999999999999999998876431  12211100            001127999999 99999999999999999


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        66 ~~~-~~a~L~V   75 (75)
T cd05892          66 VAT-CHARLDV   75 (75)
T ss_pred             eEE-EEEEEeC
Confidence            877 6666654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.60  E-value=2.4e-14  Score=96.54  Aligned_cols=114  Identities=24%  Similarity=0.458  Sum_probs=79.0

Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCC-CcceecCCcEEEEeeeCcc-cC-ceEEEEeCC
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPLYLGCPVAGY-PI-ESITWQKGV  150 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~  150 (258)
                      ++|.|.++ +..|+|.|.|.+.+..+... ..+.|.|..+|.+.... ......|+.+.|.|.+.+. |. +.|.|++++
T Consensus         1 asL~i~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g   78 (139)
T cd05771           1 ASLTLPGL-TVHDEGTYICSVSTPPHQAQ-QIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREP   78 (139)
T ss_pred             CeEEECCC-CHHHCEEEEEEEEccCccee-eEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence            36899999 99999999999998777665 88899998887664432 2333478899999999884 54 589999987


Q ss_pred             cccCC-----Cc----ceEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        151 QQLPL-----NR----RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       151 ~~~~~-----~~----~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .....     ..    ......+++      |.+..... ++...|+|.+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~-~~g~~ytC~V~H~~l  132 (139)
T cd05771          79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE-DAGATYTCRVSHVSL  132 (139)
T ss_pred             CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc-CCCCEEEEEEEcCCC
Confidence            54221     11    112233444      34433322 456799999998643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=1.8e-14  Score=88.90  Aligned_cols=81  Identities=27%  Similarity=0.532  Sum_probs=64.7

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      .+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....+.. ..++.|.|.++.. +|.|.|+|.|.|..|. ....+
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~-~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~~   83 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS-MSGAVLKIFNIQP-EDEGTYECEAENIKGK-DKHQA   83 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe-cCCCEEEECcCCh-hhCEEEEEEEEcCCCc-eEEEE
Confidence            3556778899999999999999999999999988776544333 2456899999997 9999999999999985 44555


Q ss_pred             EEEe
Q psy14532        198 HISV  201 (258)
Q Consensus       198 ~l~v  201 (258)
                      .|.|
T Consensus        84 ~l~V   87 (88)
T cd05851          84 RVYV   87 (88)
T ss_pred             EEEE
Confidence            5544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.59  E-value=1.1e-14  Score=91.75  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=64.7

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEec--------CCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFP--------NGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ....+.+|+.+.|.|.+.| .|+|.+.|+|++..+..........        ...|.|.++.. +|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCCc
Confidence            4567889999999999999 8899999999999887544332221        25799999997 999999999999998


Q ss_pred             CCccceEEEEee
Q psy14532        191 RSSSQNVHISVT  202 (258)
Q Consensus       191 ~~~~~~~~l~v~  202 (258)
                       ..+..+.|.|.
T Consensus        90 -~~~~t~~L~V~  100 (101)
T cd04975          90 -SKSLTFELYVN  100 (101)
T ss_pred             -cEEEEEEEEEE
Confidence             45566666664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.59  E-value=1.5e-14  Score=91.26  Aligned_cols=93  Identities=24%  Similarity=0.440  Sum_probs=68.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCcc--ccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRH--ENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|+|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.....  ..++.+.             .....++|.|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~L~I~   67 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-------------GHARVSSLTLK   67 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-------------CCccEEEEEEC
Confidence            68885 56678899999999999999999999999998755432210  0011100             00123479999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ++ +.+|+|.|.|.+.|..|... .++.|.|
T Consensus        68 ~v-~~~D~G~Y~C~a~N~~G~~~-~s~~l~v   96 (96)
T cd05732          68 DV-QLTDAGRYDCEASNRIGGDQ-QSMYLEV   96 (96)
T ss_pred             cC-CcCcCEEeEEEEEeCCCCcE-EEEEEeC
Confidence            99 99999999999999999876 6666653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.59  E-value=1.4e-14  Score=87.52  Aligned_cols=78  Identities=23%  Similarity=0.527  Sum_probs=59.6

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      |.+..+.+|++++|.|.+.+. .+.+.|+|+|.++...   .+..+                 ...+|.|.++ +.+|+|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---~~~~~-----------------~~~~L~I~~~-~~~DsG   58 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---NRTRI-----------------TGEEVQIKDA-VPRDSG   58 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---ceEEE-----------------eCCEEEECCC-ChhhCE
Confidence            456778999999999999885 5689999999877543   11111                 2457999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .|+|.+.+..|... ..+.|.
T Consensus        59 ~Y~C~a~n~~g~~~-~~~~v~   78 (79)
T cd04973          59 LYACVTSSPSGSDT-TYFSVN   78 (79)
T ss_pred             EEEEEEeCCCCccc-EEEEEe
Confidence            99999999877654 444443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.58  E-value=2e-14  Score=88.44  Aligned_cols=82  Identities=26%  Similarity=0.541  Sum_probs=62.6

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      +.+.+|+++.|.|.+.+.|.+.+.|+|++..+........+..               .....+|.|.++ ..+|+|.|+
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~---------------~~~~~~l~i~~~-~~~D~G~Y~   67 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKV---------------RNQHWSLIMESV-VPSDKGNYT   67 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEE---------------eCCceEEEEccC-CcccCEEEE
Confidence            4578999999999999999999999999988764311111100               112457899999 999999999


Q ss_pred             EEEEeCCcceeeceEEEEE
Q psy14532         92 CTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~v  110 (258)
                      |.+.|..|... ..+.|.|
T Consensus        68 C~a~N~~G~~~-~~~~l~v   85 (85)
T cd05857          68 CVVENEYGSIN-HTYHLDV   85 (85)
T ss_pred             EEEEeCCCEEE-EEEEEEC
Confidence            99999999876 6666654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.58  E-value=3.2e-14  Score=84.08  Aligned_cols=71  Identities=25%  Similarity=0.512  Sum_probs=56.3

Q ss_pred             ceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         19 PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        19 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      ++.|.|.+.|.|.|.++|+|++..+...   .++                .+..++.|.|.++ +.+|+|.|+|.+.|..
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~---~~~----------------~~~~~~~l~i~~v-~~~D~G~Y~C~A~N~~   60 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS---DYF----------------KIVKEHNLQVLGL-VKSDEGFYQCIAENDV   60 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC---CCE----------------EEEecCCEEEEcC-CcccCEEEEEEEEcCC
Confidence            4899999999999999999998876543   111                1223567899999 9999999999999999


Q ss_pred             cceeeceEEEEE
Q psy14532         99 GRSSSQNVHISV  110 (258)
Q Consensus        99 ~~~~~~~~~l~v  110 (258)
                      |... ..+.|.|
T Consensus        61 G~~~-~~~~L~V   71 (71)
T cd05723          61 GNVQ-ASAQLII   71 (71)
T ss_pred             CEEE-EEEEEEC
Confidence            9877 6666653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.58  E-value=2.8e-14  Score=86.33  Aligned_cols=83  Identities=17%  Similarity=0.331  Sum_probs=62.1

Q ss_pred             CceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         18 PPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        18 ~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      +++.|.|.+.+.  +.+.|.|+++|+++.......++...            .....+++|.|.++ +..|+|.|+|.+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~------------~~~~~~~~L~I~nv-~~~dsG~YtC~a~   67 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV------------GGQDSAGDLMIRSI-QLKHAGKYVCMVQ   67 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe------------ccCCCCCcEEEecC-CHHHCEEEEEEEE
Confidence            578999999874  46689999999998632111121110            00123568999999 9999999999999


Q ss_pred             eCCcceeeceEEEEEecCC
Q psy14532         96 NKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~  114 (258)
                      +..+... .+..|.|..+|
T Consensus        68 n~~~~~~-a~a~L~V~~pP   85 (85)
T cd05853          68 TSVDKLS-AAADLIVRGPP   85 (85)
T ss_pred             cccCceE-EEEEEEEecCC
Confidence            9998887 88899998775

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.58  E-value=3e-14  Score=85.71  Aligned_cols=75  Identities=35%  Similarity=0.666  Sum_probs=60.0

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.|.+.|++++..+.......                 ......+.|.|.++ +..|+|.|+|.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-----------------~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N   62 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-----------------RRRVDGGTLILSNV-QPNDTAVYQCNASN   62 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-----------------eEEccCCEEEECCC-ChhhCEEEEEEEEc
Confidence            7899999999999999999999998776542110                 11223568999999 99999999999999


Q ss_pred             CCcceeeceEEEEE
Q psy14532         97 KQGRSSSQNVHISV  110 (258)
Q Consensus        97 ~~~~~~~~~~~l~v  110 (258)
                      ..|... ..+.|.|
T Consensus        63 ~~G~~~-~~~~l~V   75 (76)
T cd04978          63 VHGYLL-ANAFVHV   75 (76)
T ss_pred             cCCeEE-EeEEEEE
Confidence            988876 6777765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.57  E-value=2.9e-14  Score=84.91  Aligned_cols=73  Identities=33%  Similarity=0.576  Sum_probs=58.4

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.+.+.|+|++..+...   .++                ....+++|.|.++ +.+|+|.|+|.+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~---~~~----------------~~~~~~~L~i~~v-~~~D~G~Y~C~a~N   60 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS---SRI----------------CIWPDGSLEILNV-TKSDEGKYTCFAEN   60 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC---CCE----------------EECCCCeEEEccC-ChhHCEEEEEEEEC
Confidence            789999999999999999999998876533   111                1223568999999 99999999999999


Q ss_pred             CCcceeeceEEEEE
Q psy14532         97 KQGRSSSQNVHISV  110 (258)
Q Consensus        97 ~~~~~~~~~~~l~v  110 (258)
                      ..|... ..+.|.|
T Consensus        61 ~~G~~~-~~~~l~V   73 (73)
T cd04969          61 FFGKAN-STGSLSV   73 (73)
T ss_pred             CCCceE-EEEEEEC
Confidence            998876 6666553

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=3.9e-14  Score=87.28  Aligned_cols=86  Identities=19%  Similarity=0.306  Sum_probs=64.2

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+.++|.|.+.+.|.+.+.|+|++..+....  .++.+....         .......+|.|.++ ...|+|.|+|.+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~--~r~~~~~~~---------~~~~~~s~L~I~~~-~~~D~G~YtC~A~N   68 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM--SRYLVSTKE---------VGDEVISTLQILPT-VREDSGFFSCHAIN   68 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCC--CcEEEEEec---------CCCcEEEEEEECCC-CcccCEEEEEEEEc
Confidence            7899999999999999999999998775431  122211000         00011347999999 99999999999999


Q ss_pred             CCcceeeceEEEEEecCCe
Q psy14532         97 KQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~~  115 (258)
                      ..|... ..+.|.|..+|.
T Consensus        69 ~~G~~~-~~~~L~V~~~P~   86 (88)
T cd05735          69 SYGEDR-GIIQLTVQEPPD   86 (88)
T ss_pred             CCCcce-EEEEEEEeCCCC
Confidence            999887 888899987653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.57  E-value=3.2e-14  Score=84.63  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=55.1

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      |.|.|.+.|.|.|.+.|+|++..+....  .++.+...            .....+|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~--~~~~~~~~------------~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G   65 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNT--DRVSMHQD------------NCGYICLLIQGA-TKEDAGWYTVSAKNEAG   65 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCC--CeEEEEEc------------CCCEEEEEECCC-CHHHCEEEEEEEEcCCC
Confidence            5799999999999999999998875431  12211100            000125899999 99999999999999999


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        66 ~~~-~~a~L~V   75 (75)
T cd05893          66 IVS-CTARLDV   75 (75)
T ss_pred             EEE-EEEEEeC
Confidence            877 6666653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.57  E-value=2e-14  Score=85.63  Aligned_cols=72  Identities=33%  Similarity=0.592  Sum_probs=61.0

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      |+.+.|.|.+.|.|.+.++|++++..+....+..+..++.|.|.++.. +|+|.|+|.+.|..|. ....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTK-SDEGKYTCFAENFFGK-ANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCCh-hHCEEEEEEEECCCCc-eEEEEEEE
Confidence            678999999999999999999999888766677777778999999998 9999999999999884 44444444

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.56  E-value=4e-14  Score=87.64  Aligned_cols=79  Identities=29%  Similarity=0.437  Sum_probs=65.3

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      ..+.+.+|+.++|.|.+.|. .|.+.|++++..+.... ..+. ..+.|.|.++.. +|.|.|.|.|.|..|...+..+.
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTR-SDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCCh-hhCEEEEEEEEcCCCCEEeeeEE
Confidence            34578899999999999999 99999999988765433 3333 346899999997 99999999999999977777777


Q ss_pred             EEe
Q psy14532        199 ISV  201 (258)
Q Consensus       199 l~v  201 (258)
                      |.|
T Consensus        88 L~V   90 (91)
T cd05740          88 LNV   90 (91)
T ss_pred             EEe
Confidence            766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.56  E-value=7.3e-14  Score=88.09  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|+|.++.....  .......        .........+|.|.++ ..+|+|.|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~--~~~~~~~--------~~~~~~~~s~L~I~~v-~~~D~G~Y   80 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLT--EITTSEH--------NVQETRYVSKLKLIRA-KEEDSGLY   80 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcc--eEEeccc--------cccceeeccEEEEeeC-CHHHCEEE
Confidence            46688999999999999999999999999998875421  1100000        0000112357999999 99999999


Q ss_pred             EEEEEeCCcceeeceEEEEEe
Q psy14532         91 WCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +|.|.|..|... .++.|.|.
T Consensus        81 tc~A~N~~g~~~-~t~~l~V~  100 (101)
T cd05859          81 TALAQNEDAVKS-YTFALQIQ  100 (101)
T ss_pred             EEEEEcCCceEE-EEEEEEEE
Confidence            999999988776 67777764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.56  E-value=3.2e-14  Score=84.08  Aligned_cols=70  Identities=23%  Similarity=0.442  Sum_probs=58.0

Q ss_pred             cEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        129 PLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       129 ~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      .+.|.|.+.|.|.|.++|++++..+....++.+...+.|.|.++.. +|.|.|+|.|.|..|+ ....+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK-SDEGFYQCIAENDVGN-VQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCc-ccCEEEEEEEEcCCCE-EEEEEEEE
Confidence            3789999999999999999999887766666666778899999987 9999999999999884 44445444

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.56  E-value=5e-14  Score=84.86  Aligned_cols=79  Identities=23%  Similarity=0.448  Sum_probs=61.4

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      |...|.++.+.+|+++.|.|.+.|.|.| +|.|+|+|.++...     ..                 ...+.|.|..+  
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----~~-----------------~~~s~L~i~~~--   56 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----PA-----------------PSPSVLNVPGL--   56 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----CC-----------------CCCCEEEEccc--
Confidence            3456788999999999999999999999 79999999877531     00                 01346788766  


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHI  108 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l  108 (258)
                       .|+|.|.|.+.|..|...+..+.|
T Consensus        57 -~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          57 -NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             -cCCeEEEEEEEeccCcEEeeeEEe
Confidence             478999999999998766555544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.56  E-value=6.1e-14  Score=86.16  Aligned_cols=83  Identities=29%  Similarity=0.515  Sum_probs=61.3

Q ss_pred             CceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      +++.|.|.+.+.|.+  .+.|++++..+........+..            .......++|.|.++ +..|+|.|+|.+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~------------~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~   67 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRR------------VGGKDSNGDLMIRNA-QLKHAGKYTCTAQ   67 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEE------------EecccccceEEEccC-CHHhCeeeEEEEe
Confidence            578999999998876  6799999987754311111100            011123578999999 9999999999999


Q ss_pred             eCCcceeeceEEEEEecCC
Q psy14532         96 NKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        96 ~~~~~~~~~~~~l~v~~~~  114 (258)
                      |..+... ..+.|.|..+|
T Consensus        68 n~~g~~~-~~~~l~V~~pP   85 (85)
T cd04970          68 TVVDSLS-ASADLIVRGPP   85 (85)
T ss_pred             cCCCcEE-EEEEEEEECCC
Confidence            9888776 88889988764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.56  E-value=5.3e-14  Score=83.00  Aligned_cols=69  Identities=26%  Similarity=0.476  Sum_probs=54.6

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      |.|.|.+.|.|.|.+.|+|+|..+...   .+..                 ...++|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~-----------------~~~~~L~I~~v-~~~D~G~YtC~a~N~~g   59 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTK-----------------KSGHSLTIKDV-TEEDAGNYTVVLTNKQA   59 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---CEEE-----------------cCCCEEEECcC-CHHHCEEEEEEEEcCCc
Confidence            579999999999999999999887654   1111                 12468999999 99999999999999888


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.+.+
T Consensus        60 ~~~-~~~~~~~   69 (71)
T cd04976          60 KLE-KRLTFTL   69 (71)
T ss_pred             cEE-EEEEEEE
Confidence            765 5555544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.55  E-value=4.5e-14  Score=88.05  Aligned_cols=80  Identities=31%  Similarity=0.458  Sum_probs=63.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec----CCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+..    ...|.|.++.. +|+|.|+|.+.|..|. .+
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~   85 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGG-ET   85 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCc-ce
Confidence            345678899999999999999999999999998887665554432    23699999997 9999999999999884 33


Q ss_pred             ceEEEE
Q psy14532        195 QNVHIS  200 (258)
Q Consensus       195 ~~~~l~  200 (258)
                      ..+.|.
T Consensus        86 ~~~~v~   91 (92)
T cd05737          86 VDVTVS   91 (92)
T ss_pred             EEEEEe
Confidence            444443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.55  E-value=7e-14  Score=86.28  Aligned_cols=80  Identities=35%  Similarity=0.616  Sum_probs=65.3

Q ss_pred             CCcceecCCcEEEEeee-CcccCceEEEEeCCcccCC-CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        120 GNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      ....+.+|+++.|.|.+ .+.|.+.+.|++++..+.. ..+.....++.|.|.++.. +|+|.|+|.+.|..|...+..+
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~   82 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK-SDEGTYKCVATNMVGERESAAA   82 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCc-ccCEEEEEEEEeccCceeeeeE
Confidence            45677899999999998 6889999999999887765 3445555578899999997 9999999999999886666665


Q ss_pred             EEE
Q psy14532        198 HIS  200 (258)
Q Consensus       198 ~l~  200 (258)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05724          83 RLS   85 (86)
T ss_pred             EEE
Confidence            554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.55  E-value=5e-14  Score=86.42  Aligned_cols=80  Identities=29%  Similarity=0.489  Sum_probs=65.5

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+....+... .++.|.|.++.. +|+|.|+|.|.|..|. ....+
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~   81 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSL-SDSGMYQCVAENKHGT-IYASA   81 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCH-HHCEEEEEEEECCCCe-EEEEE
Confidence            45567788999999999999999999999999998876555543 567899999997 9999999999999884 44444


Q ss_pred             EEE
Q psy14532        198 HIS  200 (258)
Q Consensus       198 ~l~  200 (258)
                      .|.
T Consensus        82 ~l~   84 (85)
T cd05728          82 ELA   84 (85)
T ss_pred             EEE
Confidence            443

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.55  E-value=8.1e-14  Score=83.06  Aligned_cols=73  Identities=36%  Similarity=0.636  Sum_probs=56.9

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ++|.|.+.|.|.|.+.|+|++..+..... .++                ....+++|.|.++ +.+|+|.|+|.+.|..|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~-~~~----------------~~~~~g~L~i~~~-~~~D~G~Y~C~a~N~~G   62 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSN-GRI----------------KQLRSGALQIENS-EESDQGKYECVATNSAG   62 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCC-CCE----------------EEcCCcEEEECCC-ChhhCEEEEEEEECCCC
Confidence            57999999999999999999887653211 111                1224568999999 99999999999999998


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ...+..+.|.|
T Consensus        63 ~~~s~~a~l~v   73 (74)
T cd05738          63 TRYSAPANLYV   73 (74)
T ss_pred             ceEcccEEEEE
Confidence            87657777765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>KOG3515|consensus

Probab=99.54  E-value=1.6e-13  Score=112.06  Aligned_cols=223  Identities=20%  Similarity=0.300  Sum_probs=146.0

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      .......+..+..|+.|.|.|.+.+. |...|.|++.++.+..     +.                ....+.+|..... 
T Consensus         9 v~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~-----~~----------------~~~~~~~~~~~~~-   66 (741)
T KOG3515|consen    9 VCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG-----RY----------------ATIADPTLVTTGD-   66 (741)
T ss_pred             cccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCccccc-----cc----------------ccccCCceeeecc-
Confidence            33333344488999999999999876 5568999998765541     11                1112446666666 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeC--cccCceEEEEeCCcccCCCcc-
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVA--GYPIESITWQKGVQQLPLNRR-  158 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~--~~~~~~i~W~~~~~~~~~~~~-  158 (258)
                      ..+.-+.|.|++.+..+........+.+..++.-.. ........+..+.+.|.+.  +.|.+.+.|..++........ 
T Consensus        67 ~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~  146 (741)
T KOG3515|consen   67 VRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQ  146 (741)
T ss_pred             hhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCC
Confidence            666778999999998766555777777777664322 3334455678899999653  467889999987654322110 


Q ss_pred             -e---------EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc--cceEEEEeecCCc---cccCCCCCccCCCCeee
Q psy14532        159 -Q---------KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISVTVPPK---IAPFEFQPDLHSGDRAG  223 (258)
Q Consensus       159 -~---------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~--~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~  223 (258)
                       .         .......+.+...+. ++.|.|+|.+.+......  .....+.+..+..   +..........+|+.+.
T Consensus       147 ~~~~~~~a~gss~t~~s~l~~~v~Rk-a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~in  225 (741)
T KOG3515|consen  147 RGRVGAGALGSSYTEPSLLKQTVSRK-ADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTIN  225 (741)
T ss_pred             cccccccccCceeccccceeeEEEEe-cCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEE
Confidence             0         001233466666665 999999999998632222  2233333333221   11112225678899999


Q ss_pred             EEEEeccCCCCceeEEEECCEecccc
Q psy14532        224 VQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       224 l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      |.|.+.++.|.+.+.|+++...+..+
T Consensus       226 lvc~~~gg~P~~~~~w~~~s~~~~~~  251 (741)
T KOG3515|consen  226 LVCNAQGGNPSQQQTWYKDSRPQSES  251 (741)
T ss_pred             EEehhhcCCcchhhhhccccccchhh
Confidence            99999889999999999998888765

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.54  E-value=8.6e-14  Score=86.58  Aligned_cols=85  Identities=25%  Similarity=0.377  Sum_probs=63.5

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .|..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...   .++...        ..    .....+|.|.++ ..+|+
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~---~~~~~~--------~~----~~~~~~L~I~~~-~~~D~   70 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS---EHYSVK--------LE----QGKYASLTIKGV-TSEDS   70 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC---CCEEEE--------Ec----CCCEEEEEECCC-ChhhC
Confidence            456778999999999999999999999999998776533   111110        00    001136999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEE
Q psy14532         88 GVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      |.|+|.+.|..|... ..+.|.
T Consensus        71 G~Y~C~a~N~~G~~~-~~~~v~   91 (92)
T cd05891          71 GKYSINVKNKYGGET-VDVTVS   91 (92)
T ss_pred             EEEEEEEEeCCCcee-eEEEEE
Confidence            999999999988776 655554

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.54  E-value=9.2e-14  Score=86.45  Aligned_cols=89  Identities=27%  Similarity=0.386  Sum_probs=63.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +...|....+.+|+++.|.|.+.|.| +.+.|++ ++..+...   .+....            .......+|.|.++ +
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~---~~~~~~------------~~~~~~~~L~I~~v-~   65 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQ---QQISVV------------QNDDVRSTLTIYNA-N   65 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccC---CCEEEE------------eCCCCEEEEEEecC-C
Confidence            45677888999999999999999986 4999997 45444331   111100            00011347999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .+|+|.|+|.+.|..|.....++.|.|
T Consensus        66 ~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          66 IEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             cccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            999999999999987655446666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.53  E-value=1.8e-13  Score=82.16  Aligned_cols=74  Identities=32%  Similarity=0.636  Sum_probs=56.0

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      |+|.|.+.|.|.|.+.|+|+|.++....  ..+.+               ....++|.|.++ ..+|+|.|.|.+.|..|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~--~~~~~---------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G   62 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ--GNYSV---------------SSKERTLTLRSA-GPDDSGLYYCCAHNAFG   62 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCC--ccEEE---------------eCCCCEEEEeeC-CcccCEEEEEEEEeCCC
Confidence            5899999999999999999998775431  11111               112457999999 99999999999999988


Q ss_pred             cee-eceEEEEEe
Q psy14532        100 RSS-SQNVHISVT  111 (258)
Q Consensus       100 ~~~-~~~~~l~v~  111 (258)
                      ... +..+.|.|.
T Consensus        63 ~~~s~~~~~l~v~   75 (77)
T cd05760          63 SVCSSQNFTLSII   75 (77)
T ss_pred             eEeeCceEEEEEe
Confidence            754 356666664

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.53  E-value=1.1e-13  Score=80.95  Aligned_cols=61  Identities=23%  Similarity=0.341  Sum_probs=50.2

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|.+.|+|+|.++...   ..                  ......|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~---~~------------------~~~~~~L~I~~v-~~~D~G~YtC~a~N~~G   58 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN---HT------------------FKRGVHLTIYEV-TEKDAGNYTVVLTNPIT   58 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---CE------------------EccCCEEEECcC-CHHHCEEEEEEEEECCC
Confidence            478999999999999999999988643   11                  012347999999 99999999999999998


Q ss_pred             cee
Q psy14532        100 RSS  102 (258)
Q Consensus       100 ~~~  102 (258)
                      ...
T Consensus        59 ~~~   61 (70)
T cd05864          59 KEE   61 (70)
T ss_pred             cee
Confidence            665

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=5.9e-14  Score=83.67  Aligned_cols=71  Identities=35%  Similarity=0.533  Sum_probs=58.8

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccC--CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLP--LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ++|.|.+.|.|.|.+.|++++..+.  ...++....++.|.|.++.. +|+|.|+|.|.|..|...+....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence            4789999999999999999988775  34455566677899999987 99999999999999876667666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.53  E-value=1.6e-13  Score=88.03  Aligned_cols=100  Identities=24%  Similarity=0.365  Sum_probs=69.6

Q ss_pred             CCcceeeceeeee----cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKFIQQTL----QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~----~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|.|...+....+    ..|.++.|.|.+.|.|.+.+.|+|++..+....  .++....       ..  ......++|.
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~--~r~~~~~-------~~--~~~~~~s~L~   72 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN--PRYEETT-------EH--TGTVHTSILT   72 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCC--CeEEEEe-------ec--cCccceeEEE
Confidence            5677555542222    356899999999999999999999998875431  1211110       00  0001135799


Q ss_pred             Eeeccc-CCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         78 IENVQK-DHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        78 i~~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      |.++ . ..|.|.|+|.|.|..|... ..+.|.+...|
T Consensus        73 I~~v-~~~~D~G~Y~C~A~N~~G~~~-~~i~L~~~~~p  108 (109)
T cd05773          73 IINV-SAALDYALFTCTAHNSLGEDS-LDIQLVSTSRP  108 (109)
T ss_pred             ECcC-CccCCCEEEEEEEEeCCccCc-EEEEEEecCCC
Confidence            9998 6 6899999999999999887 88888887665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.53  E-value=9e-14  Score=85.94  Aligned_cols=81  Identities=28%  Similarity=0.544  Sum_probs=64.5

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEe-CCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+..|+.+.|.|.+.|.|. .+.|++ ++..+....+..+..++   .|.|.++.. +|+|.|+|.|.|..|....
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~   84 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI-EDAGIYRCQATDAKGQTQE   84 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCCh-HHCEEEEEEEEcCCCcEEE
Confidence            34566889999999999999887 899998 45565555556655554   799999997 9999999999999986666


Q ss_pred             ceEEEEe
Q psy14532        195 QNVHISV  201 (258)
Q Consensus       195 ~~~~l~v  201 (258)
                      ..+.|.+
T Consensus        85 ~~i~l~~   91 (92)
T cd05866          85 ATVVLEI   91 (92)
T ss_pred             EEEEEEE
Confidence            6666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=1.2e-13  Score=81.67  Aligned_cols=70  Identities=39%  Similarity=0.700  Sum_probs=55.1

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|.+.|+|++..+....   .                .....+++|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~---~----------------~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G   60 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR---T----------------KKLNNNKTLQLDNV-LESDDGEYVCTAENSEG   60 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc---e----------------eEEcCCCEEEEccc-CHHhCEEEEEEEEcCCC
Confidence            5799999999999999999987554320   0                01123568999999 99999999999999999


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        61 ~~~-~~~~l~V   70 (71)
T cd05876          61 SAR-HHYTVTV   70 (71)
T ss_pred             eEE-EEEEEEE
Confidence            876 6676665

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.52  E-value=1e-13  Score=85.02  Aligned_cols=78  Identities=28%  Similarity=0.560  Sum_probs=62.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+..   .+.|.|.++.. +|+|.|+|.|.|..|. .+..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~-~~~~   81 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAER-EDEGVYTITVTNPVGE-DHAS   81 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCcc-CcCEEEEEEEEeCCCc-EEEE
Confidence            356789999999999999999999999999888643 2344332   35799999997 9999999999999984 4455


Q ss_pred             EEEE
Q psy14532        197 VHIS  200 (258)
Q Consensus       197 ~~l~  200 (258)
                      +.|.
T Consensus        82 ~~l~   85 (86)
T cd05894          82 LFVK   85 (86)
T ss_pred             EEEE
Confidence            5554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.52  E-value=6.2e-14  Score=83.25  Aligned_cols=69  Identities=30%  Similarity=0.599  Sum_probs=53.9

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCC-cceEEecC--C--eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPN--G--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~--~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      +.|.|.+.|.|.|.++|++++..+... .++.+..+  +  +|.|.++.. +|+|.|+|.|.|..|. .+....|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~-~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGV-ATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCe-EEEEEEEe
Confidence            479999999999999999999888643 44444332  2  699999998 9999999999999884 33444444

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.52  E-value=2e-13  Score=79.86  Aligned_cols=68  Identities=25%  Similarity=0.526  Sum_probs=51.9

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |++++|.|.+.|.|.|.|.|+|++..+...   .+..                 .....|.|.++ .  |+|.|+|.+.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~---~~~~-----------------~~~~~L~i~~~-~--d~G~Y~C~A~N   57 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE---DEMP-----------------VGRNVLELTNI-Y--ESANYTCVAIS   57 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc---ccee-----------------cCccEEEEecc-c--cCeeEEEEEEe
Confidence            788999999999999999999999876443   1111                 12346888887 4  78999999999


Q ss_pred             CCcceeeceEEE
Q psy14532         97 KQGRSSSQNVHI  108 (258)
Q Consensus        97 ~~~~~~~~~~~l  108 (258)
                      ..|... ..+.|
T Consensus        58 ~~G~~~-~~a~l   68 (69)
T cd05739          58 SLGMIE-ATAQV   68 (69)
T ss_pred             CCCEEE-EEEEE
Confidence            998766 44443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.52  E-value=7.3e-14  Score=86.91  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=61.2

Q ss_pred             eeeeecCCCceEEEEEEee-----cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532         10 IQQTLQPGPPVSLKCIATG-----NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      ....+.+|+++.|.|.+.+     .|.+.+.|||++..+..... ...              + ....+++|.|.++ ..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~-~~~--------------r-~~~~~~~L~I~~~-~~   69 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTE-ERS--------------R-MHQQKDLLWFLPA-AL   69 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccc-ccc--------------e-eeecCCeEEEccC-Cc
Confidence            4567889999999999988     57889999999865432100 000              0 1113568999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|+|.|.|.+.|..+... ..+.|.|
T Consensus        70 ~DsG~Y~C~~~N~~g~~~-~~~~L~v   94 (94)
T cd05756          70 EDSGLYTCVVRNSTYCMK-VSISLTV   94 (94)
T ss_pred             ccCeEEEEEEcCCCccEE-EEEEEEC
Confidence            999999999999988776 6666653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.52  E-value=1.5e-13  Score=86.34  Aligned_cols=82  Identities=35%  Similarity=0.646  Sum_probs=64.7

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEec-----ccCCCCcEEEEEEEeC-CC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENV-----QKDHDRGVYWCTATNK-QG  190 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~-----~~~~~~g~y~C~~~~~-~~  190 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  .....++.+.|.++     .. .|.|.|+|.+.|. .|
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~-~D~G~Y~C~a~N~~~G   84 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNK-PDEGFYQCVAQNDSLG   84 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCC-CcCEEEEEEEECCccC
Confidence            4456677899999999999999999999999988764432  44456677888776     34 8999999999999 88


Q ss_pred             CCccceEEEEe
Q psy14532        191 RSSSQNVHISV  201 (258)
Q Consensus       191 ~~~~~~~~l~v  201 (258)
                      ...++.+.|.|
T Consensus        85 ~~~s~~~~l~v   95 (95)
T cd05722          85 SIVSRTARLTV   95 (95)
T ss_pred             cEEEeeeEEeC
Confidence            76677776654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.52  E-value=1.2e-13  Score=85.10  Aligned_cols=78  Identities=24%  Similarity=0.428  Sum_probs=62.0

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEec----C---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFP----N---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~----~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++.+..    .   ..|.|.++.. +|.|.|+|.|.|..|. ....+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~-~~~~~~   78 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGE-DRGIIQ   78 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCc-ceEEEE
Confidence            788999999999999999999999777543 2333221    1   4689999987 9999999999999994 557788


Q ss_pred             EEeecCCc
Q psy14532        199 ISVTVPPK  206 (258)
Q Consensus       199 l~v~~~p~  206 (258)
                      |.|..+|.
T Consensus        79 L~V~~~P~   86 (88)
T cd05735          79 LTVQEPPD   86 (88)
T ss_pred             EEEeCCCC
Confidence            88887764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.52  E-value=2.2e-13  Score=81.30  Aligned_cols=75  Identities=29%  Similarity=0.435  Sum_probs=54.7

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|.+.|+|++..+....  .++.+...            .....+|.|.++ +.+|+|.|+|.+.|..|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~--~r~~~~~~------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G   65 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNT--DRISLYQD------------NCGRICLLIQNA-NKEDAGWYTVSAVNEAG   65 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCC--CcEEEEEc------------CCCeEEEEECCC-CcccCEEEEEEEEcCCC
Confidence            5799999999999999999998875331  11111100            001125999999 99999999999999999


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        66 ~~~-~~~~l~v   75 (75)
T cd05744          66 VVS-CNARLDV   75 (75)
T ss_pred             cEE-EEEEEeC
Confidence            876 5666653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.52  E-value=1.6e-13  Score=85.63  Aligned_cols=81  Identities=27%  Similarity=0.472  Sum_probs=60.7

Q ss_pred             CCcceecCCcEEEEeeeCcccC-ceEEEEe-CCcccCC-CcceEEec----CCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPI-ESITWQK-GVQQLPL-NRRQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~-~~~~~~~-~~~~~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ....+..|+.+.|.|.+.|.|. +.+.|++ ++..+.. ..++.+..    .++|.|.++.. +|.|.|+|.|.|..+..
T Consensus         8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~~g~   86 (96)
T cd05865           8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNEDEGE   86 (96)
T ss_pred             CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCCCCc
Confidence            3456788999999999999984 7999998 6765544 33333322    25799999997 99999999999997435


Q ss_pred             ccceEEEEe
Q psy14532        193 SSQNVHISV  201 (258)
Q Consensus       193 ~~~~~~l~v  201 (258)
                      ....+.|.|
T Consensus        87 ~~~s~~l~v   95 (96)
T cd05865          87 SEATVNVKI   95 (96)
T ss_pred             EEEEEEEEE
Confidence            556666654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.52  E-value=1.8e-13  Score=86.02  Aligned_cols=81  Identities=27%  Similarity=0.523  Sum_probs=64.7

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      ...+..|+.+.|.|.+.|.|.+.+.|++++..+... .++..... ..|.|.++.. +|.|.|+|.|.|..|. ....+.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~   89 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDK-LDEAEYTCIAENKAGE-QEAEIH   89 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCCh-hhCEEEEEEEEcCCCe-EEEEEE
Confidence            346788999999999999999999999999877654 33333333 4699999997 9999999999999984 556777


Q ss_pred             EEeec
Q psy14532        199 ISVTV  203 (258)
Q Consensus       199 l~v~~  203 (258)
                      |.|..
T Consensus        90 L~V~~   94 (95)
T cd05730          90 LKVFA   94 (95)
T ss_pred             EEEEe
Confidence            77653

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.52  E-value=5.1e-14  Score=82.76  Aligned_cols=61  Identities=33%  Similarity=0.562  Sum_probs=54.2

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.|.|.+.|.|.|.+.|++++..+....++.+..++.|.|.++.. +|+|.|+|.|.|..|.
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~   61 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGV-ADQGRYECVARNTIGY   61 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCCh-hhCEEEEEEEECCCCc
Confidence            479999999999999999999888766667676788999999997 9999999999999884

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.52  E-value=9.8e-14  Score=81.54  Aligned_cols=68  Identities=35%  Similarity=0.660  Sum_probs=53.7

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      |.|.|.+.+.|.|.+.|+|++..+...   .++.                +..+++|.|.++ ..+|+|.|+|.+.|..|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~---~~~~----------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G   60 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES---GKFH----------------ISPEGYLAIRDV-GVADQGRYECVARNTIG   60 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC---CCEE----------------ECCCCEEEECcC-ChhhCEEEEEEEECCCC
Confidence            579999999999999999998876543   1111                123568999999 99999999999999998


Q ss_pred             ceeeceEEE
Q psy14532        100 RSSSQNVHI  108 (258)
Q Consensus       100 ~~~~~~~~l  108 (258)
                      ... ..+.|
T Consensus        61 ~~~-~~~~L   68 (69)
T cd05746          61 YAS-VSMVL   68 (69)
T ss_pred             cEE-EEEEe
Confidence            776 55444

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.52  E-value=2.1e-13  Score=84.72  Aligned_cols=85  Identities=32%  Similarity=0.449  Sum_probs=61.3

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.+.+.|+|++..+..... ..  .        ....+..+..+++|.|.++ +.+|+|.|+|.+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~--~--------~~~~r~~v~~~~~L~I~~v-~~~D~G~Y~C~a~N   68 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSY-QP--P--------QSSSRFSVSQTGDLTITNV-QRSDVGYYICQTLN   68 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecc-cC--C--------CCCCeEEECCCCeEEEeeC-ChhhCEEEEEEEEc
Confidence            78999999999999999999998653211000 00  0        0011222234568999999 99999999999999


Q ss_pred             CCcceeeceEEEEEecCC
Q psy14532         97 KQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        97 ~~~~~~~~~~~l~v~~~~  114 (258)
                      ..|... ..+.|.|....
T Consensus        69 ~~G~~~-~~~~l~V~~~~   85 (90)
T cd05726          69 VAGSIL-TKAYLEVTDVI   85 (90)
T ss_pred             CCCceE-EEEEEEEeecc
Confidence            999877 77888887543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.51  E-value=2.7e-13  Score=83.91  Aligned_cols=80  Identities=29%  Similarity=0.503  Sum_probs=63.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..++.|.|.++.. +|+|.|+|.+.|..|. ......
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~   84 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQF-EDEGTYECEAENIKGK-DTHQGR   84 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCc-ccCEEEEEEEEECCCc-EEEEEE
Confidence            455668899999999999999999999999877654443332 4567899999997 9999999999999885 445555


Q ss_pred             EEe
Q psy14532        199 ISV  201 (258)
Q Consensus       199 l~v  201 (258)
                      |.|
T Consensus        85 l~V   87 (88)
T cd04968          85 IYV   87 (88)
T ss_pred             EEE
Confidence            544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.51  E-value=1.6e-13  Score=85.34  Aligned_cols=74  Identities=24%  Similarity=0.460  Sum_probs=57.6

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      ++.+.|.|.+.|.|.|.++|++++..+..........++.|.|.++...+|+|.|+|.|.|..|...++.+.|.
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            45799999999999999999999887753322223456789998875338999999999999987666666554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=1e-13  Score=81.88  Aligned_cols=70  Identities=34%  Similarity=0.598  Sum_probs=55.8

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +.|.|.+.|.|.|.+.|++++..+...........++|.|.++.. +|.|.|+|.|.|..|. .+..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLE-SDDGEYVCTAENSEGS-ARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCH-HhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence            478999999999999999998876544333344567899999997 9999999999999984 445555554

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.51  E-value=1.4e-13  Score=86.86  Aligned_cols=80  Identities=21%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---------cCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---------PNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.........         ..++|.|.++.. +|+|.|+|.|.|..+.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCce
Confidence            456778899999999999999999999999988755432221         135799999997 9999999999999874


Q ss_pred             CccceEEEEee
Q psy14532        192 SSSQNVHISVT  202 (258)
Q Consensus       192 ~~~~~~~l~v~  202 (258)
                       .+.++.|.|.
T Consensus        91 -~~~t~~l~V~  100 (101)
T cd05859          91 -KSYTFALQIQ  100 (101)
T ss_pred             -EEEEEEEEEE
Confidence             4455666654

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.51  E-value=9.4e-14  Score=83.16  Aligned_cols=67  Identities=21%  Similarity=0.373  Sum_probs=55.3

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |.+...|....+.+|++|+|.|.+.+.|. ..+.|+|++..+...                          ..+|.|.++
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~--------------------------~~~l~i~~~   54 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT--------------------------TNSYRIRAA   54 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc--------------------------CCeEEEeec
Confidence            56778888899999999999999988765 479999999876321                          457888888


Q ss_pred             ccCCCceEEEEEEEeC
Q psy14532         82 QKDHDRGVYWCTATNK   97 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~   97 (258)
                        .+|+|.|+|.+.+.
T Consensus        55 --~~dsG~Y~C~a~~~   68 (78)
T cd05752          55 --NNDSGEYRCQTQGS   68 (78)
T ss_pred             --ccCCEEeEEECCCC
Confidence              77999999999865

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.51  E-value=2e-13  Score=81.54  Aligned_cols=74  Identities=31%  Similarity=0.552  Sum_probs=56.1

Q ss_pred             ceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         19 PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        19 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      ++.|.|.+.|.|.|.+.|+|++..+...   .+..+.             .......|.|.++ ...|+|.|+|.+.|..
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~---~~~~~~-------------~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~   63 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLS---GRVQIE-------------TTASSTSLVIKNA-ERSDSGKYTLTLKNPA   63 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCC---CeEEEE-------------ECCCeEEEEECCC-CcCcCEEEEEEEECCC
Confidence            4789999999999999999999887433   121111             0012357999999 9999999999999999


Q ss_pred             cceeeceEEEEE
Q psy14532         99 GRSSSQNVHISV  110 (258)
Q Consensus        99 ~~~~~~~~~l~v  110 (258)
                      |... ..+.|.|
T Consensus        64 G~~~-~~~~l~V   74 (74)
T cd05748          64 GEKS-ATINVKV   74 (74)
T ss_pred             ccEE-EEEEEEC
Confidence            8876 6666653

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.51  E-value=1.9e-13  Score=81.87  Aligned_cols=74  Identities=38%  Similarity=0.616  Sum_probs=53.9

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|.+.|+|++..........++.               .....+.|.|.++ +.+|+|.|.|.+.|..|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~---------------~~~~~~~L~I~~~-~~~D~G~Y~C~A~N~~G   64 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMH---------------VMPEDDVFFIVDV-KIEDTGVYSCTAQNTAG   64 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceE---------------EecCCCEEEEeeC-CcccCEEEEEEEEcCCC
Confidence            4799999999999999999875322111111111               1123457999999 99999999999999988


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        65 ~~~-~~~~l~V   74 (75)
T cd05763          65 SIS-ANATLTV   74 (75)
T ss_pred             EEE-eeEEEEE
Confidence            766 7777766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.51  E-value=2.5e-13  Score=84.68  Aligned_cols=75  Identities=25%  Similarity=0.468  Sum_probs=62.4

Q ss_pred             eccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +..+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..   .+.|.|.++.. +|.|.|+|.+.|..|.
T Consensus         7 ~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~   84 (92)
T cd05747           7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM-SDEGNYTVVVENSEGK   84 (92)
T ss_pred             cccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCc-ccCEeEEEEEEcCCCC
Confidence            344567789999999999999999999999999988776555554433   34799999987 9999999999999884

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.50  E-value=1.8e-13  Score=82.11  Aligned_cols=73  Identities=33%  Similarity=0.610  Sum_probs=57.5

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      |+.+.|.|.+.|.|.|.++|++++..+....  ......++.|.|.++.. +|+|.|+|.+.|..|. ....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQP-SDTAVYQCEARNRHGN-LLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCCh-hhCEEEEEEEECCCCe-EEEEEEEEE
Confidence            6789999999999999999999998765432  12223567899999997 9999999999999885 344555554

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.50  E-value=1.7e-13  Score=80.60  Aligned_cols=69  Identities=28%  Similarity=0.601  Sum_probs=53.6

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ++|.|.+.+.|.+.+.|+|++..+...    +                ......++|.|.++ +.+|+|.|+|.+.|..|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~----~----------------~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G   59 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG----R----------------AEILDDKSLKIRNV-TAGDEGSYTCEAENMVG   59 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC----c----------------EEEeeCCEEEECcC-ChhHCEEEEEEEEcCCC
Confidence            579999999999999999987654322    1                11124568999999 99999999999999998


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        60 ~~~-~~~~l~V   69 (69)
T cd05725          60 KIE-ASASLTV   69 (69)
T ss_pred             cEE-EEEEEEC
Confidence            776 6666553

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.50  E-value=1e-13  Score=80.04  Aligned_cols=65  Identities=20%  Similarity=0.327  Sum_probs=52.6

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +.|.|.+.|.|.|.+.|+|++..+...     ...+.|.|.++.. +|+|.|+|.|.|..+. .++.+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~-~D~G~YtC~a~N~~g~-~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTE-ASAGTYTLVLWNSAAG-LEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCH-HHCEEEEEEEEECCcc-EEEEEEEEE
Confidence            478999999999999999999888532     1346899999997 9999999999999884 445555544

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.50  E-value=2.3e-13  Score=84.96  Aligned_cols=74  Identities=24%  Similarity=0.483  Sum_probs=57.5

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE-EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK-VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      +|+.+.|.|.+.|.|.|.++|++++..+....... ...++.|.|.++...+|.|.|+|.|.|..|...+..+.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            47899999999999999999999998876433222 235678888887423899999999999998665555544

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.49  E-value=2e-13  Score=81.70  Aligned_cols=73  Identities=27%  Similarity=0.464  Sum_probs=56.9

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      |+.+.|.|.+.|.|.|.|+|++++..+....  .......+.|.|.++.. .|+|.|+|.|.|..|. ....+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQE-RSSAVYQCNASNEYGY-LLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCH-hhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence            6789999999999999999999998875322  12223445788889987 9999999999999984 445555554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.49  E-value=1.3e-13  Score=82.00  Aligned_cols=69  Identities=32%  Similarity=0.520  Sum_probs=53.7

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCC-cceEEecCC----eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      +.|.|.+.|.|.|.++|++++..+... .++.+...+    .|.|.++.. +|+|.|+|.|.|..|. .+....|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGI-VSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCE-EEEEEEEe
Confidence            479999999999999999998887643 344443332    589999997 9999999999999984 34445544

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.49  E-value=2.3e-13  Score=83.22  Aligned_cols=78  Identities=32%  Similarity=0.577  Sum_probs=59.3

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      +.+..|+++.|.|.+.+.|.+.+.|++++..+.....   ..               ......+|.|.++ ..+|+|.|+
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~---~~---------------~~~~~~~L~i~~v-~~~D~G~Y~   64 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI---GE---------------SRKKKWTLSLKNL-KPEDSGKYT   64 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc---ce---------------ecCceEEEEEccC-ChhhCEEEE
Confidence            4467899999999999999999999999876643310   00               0012357999999 999999999


Q ss_pred             EEEEeCCcceeeceEEEE
Q psy14532         92 CTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~  109 (258)
                      |.+.|..|... ..+.|.
T Consensus        65 C~a~N~~G~~~-~~~~v~   81 (82)
T cd05856          65 CHVSNRAGEIN-ATYKVD   81 (82)
T ss_pred             EEEEcCCccEE-EEEEEe
Confidence            99999988765 555554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.49  E-value=2.3e-13  Score=82.76  Aligned_cols=78  Identities=24%  Similarity=0.361  Sum_probs=60.1

Q ss_pred             eceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .+....+.+|++|+|.|.+.. .+...+.|+|++..+...                        ..+..|.|.++ +.+|
T Consensus         5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------------------------~~~~~l~I~~~-~~~d   59 (83)
T cd05753           5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------------------------HSNSNLSIPQA-TLSD   59 (83)
T ss_pred             ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------------------------CCCceEEECcc-CHHH
Confidence            344557899999999999854 456689999998765321                        02457999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEEE
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|.|+|.+.+..+...+..+.|+|
T Consensus        60 sG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          60 SGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             CEEEEEEEEeCCceecCCCEEEEC
Confidence            999999999988766666666654

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.48  E-value=4.6e-13  Score=83.13  Aligned_cols=76  Identities=33%  Similarity=0.476  Sum_probs=60.9

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCccc--------CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQL--------PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      |+.+.|.|.+.+.|.|.+.|++++...        ....++.+..++.|.|.++.. +|+|.|+|.+.|..|. ....+.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~   78 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQR-SDVGYYICQTLNVAGS-ILTKAY   78 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCCh-hhCEEEEEEEEcCCCc-eEEEEE
Confidence            678999999999999999999987643        123445555677899999997 9999999999999884 456677


Q ss_pred             EEeecC
Q psy14532        199 ISVTVP  204 (258)
Q Consensus       199 l~v~~~  204 (258)
                      |.|...
T Consensus        79 l~V~~~   84 (90)
T cd05726          79 LEVTDV   84 (90)
T ss_pred             EEEeec
Confidence            777653

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=5.3e-13  Score=79.74  Aligned_cols=73  Identities=33%  Similarity=0.646  Sum_probs=56.1

Q ss_pred             CCceEEEEEEeecCCCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         17 GPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      |+.+.|.|.+.+.|.+.+.|++ ++..+...   .+                .....+++|.|.++ ..+|.|.|+|.+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~---~~----------------~~~~~~~~L~i~~~-~~~D~G~Y~C~a~   60 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS---SR----------------TLVYDNGTLDILIT-TVKDTGSFTCIAS   60 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC---Ce----------------EEEecCCEEEEEEC-ChhhCEEEEEEEE
Confidence            7899999999999999999997 55554322   11                11234678999999 9999999999999


Q ss_pred             eCCcceeeceEEEEE
Q psy14532         96 NKQGRSSSQNVHISV  110 (258)
Q Consensus        96 ~~~~~~~~~~~~l~v  110 (258)
                      |..|... ..+.|.|
T Consensus        61 N~~G~~~-~~~~l~v   74 (74)
T cd05764          61 NAAGEAT-ATVELHI   74 (74)
T ss_pred             CCCCeEE-EEEEEEC
Confidence            9998765 6666553

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.48  E-value=2.4e-13  Score=80.17  Aligned_cols=69  Identities=26%  Similarity=0.409  Sum_probs=54.9

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +.|.|.+.|.|.|.+.|++++..+...... ....++|.|.++.. +|+|.|+|.+.|..+. ....+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~L~I~~v~~-~D~G~YtC~a~N~~g~-~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTE-EDAGNYTVVLTNKQAK-LEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE-EcCCCEEEECcCCH-HHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence            468999999999999999999888765433 34567899999997 9999999999998874 334444443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.48  E-value=6.9e-13  Score=84.36  Aligned_cols=83  Identities=33%  Similarity=0.607  Sum_probs=61.2

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-----cceEEecCCeEEEEec-----ccCCCCcEEEEEEEe
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-----RRQKVFPNGTLLIENV-----QKDHDRGVYWCTATN  187 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~l~i~~~-----~~~~~~g~y~C~~~~  187 (258)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .......++.+.+..+     .. +|+|.|+|.+.|
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~D~G~Y~C~a~N   85 (100)
T cd07693           7 HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGR-SDEGVYVCVAHN   85 (100)
T ss_pred             cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCc-CcCEEEEEEEEc
Confidence            345677889999999999999999999999999877641     2222233444333222     44 899999999999


Q ss_pred             CCCCCccceEEEEe
Q psy14532        188 KQGRSSSQNVHISV  201 (258)
Q Consensus       188 ~~~~~~~~~~~l~v  201 (258)
                      ..|...+..+.|.|
T Consensus        86 ~~G~~~s~~~~l~v   99 (100)
T cd07693          86 SLGEAVSRNASLEV   99 (100)
T ss_pred             cccceecceEEEEe
Confidence            99976777777665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.48  E-value=4.5e-13  Score=83.35  Aligned_cols=79  Identities=29%  Similarity=0.463  Sum_probs=61.5

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--cC--CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PN--GTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++...  ..  .+|.|.++.. +|+|.|+|.+.|..|. ..
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~   85 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGG-ET   85 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCc-ee
Confidence            45677889999999999999999999999998877655443321  21  2689999987 9999999999999884 33


Q ss_pred             ceEEE
Q psy14532        195 QNVHI  199 (258)
Q Consensus       195 ~~~~l  199 (258)
                      ..+.|
T Consensus        86 ~~~~v   90 (92)
T cd05891          86 VDVTV   90 (92)
T ss_pred             eEEEE
Confidence            44444

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.47  E-value=4.2e-13  Score=83.34  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=61.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE---ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+........   .....|.|.++.. +|.|.|+|.|.|..|. ...
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~-~~~   84 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITS-ETQTTVTCTAENPVGQ-ANV   84 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCc-ccCEEEEEEEECCCCc-eeE
Confidence            3445588999999999999999999999999987654332211   2234799999987 8999999999999884 444


Q ss_pred             eEEEE
Q psy14532        196 NVHIS  200 (258)
Q Consensus       196 ~~~l~  200 (258)
                      .+.|.
T Consensus        85 ~~~L~   89 (90)
T cd04972          85 SVQVT   89 (90)
T ss_pred             EEEEe
Confidence            45544

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.47  E-value=4.2e-13  Score=80.92  Aligned_cols=69  Identities=38%  Similarity=0.629  Sum_probs=53.1

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.|.+.|++++..+...   .++.+.             .....+.|.|.++ ..+|+|.|+|.+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~---~~~~~~-------------~~~~~~~L~I~~v-~~~D~G~Y~C~a~N   63 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDS---ARVSIT-------------SEGGYGTLTIRDV-KESDQGAYTCEAIN   63 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCC---CCEEEE-------------ECCCEEEEEECCC-ChHHCEEEEEEEEe
Confidence            789999999999999999999998766433   111111             0012357999999 99999999999999


Q ss_pred             CCccee
Q psy14532         97 KQGRSS  102 (258)
Q Consensus        97 ~~~~~~  102 (258)
                      ..|...
T Consensus        64 ~~G~~~   69 (78)
T cd05743          64 TRGMVF   69 (78)
T ss_pred             cCCEEE
Confidence            988765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.47  E-value=3.7e-13  Score=80.92  Aligned_cols=73  Identities=33%  Similarity=0.534  Sum_probs=58.2

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      |+.+.|.|.+.|.|.|.+.|++++..+.....  ......+.|.|.++.. +|.|.|+|.|.|..|. ....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQP-NDTAVYQCNASNVHGY-LLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCCh-hhCEEEEEEEEccCCe-EEEeEEEEE
Confidence            67899999999999999999999987754432  2334567899999997 9999999999999884 445555554

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.47  E-value=3.7e-13  Score=82.31  Aligned_cols=76  Identities=30%  Similarity=0.449  Sum_probs=59.4

Q ss_pred             CcEEEEeeeCcccCc--eEEEEeCCcccCCCc---ceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        128 EPLYLGCPVAGYPIE--SITWQKGVQQLPLNR---RQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       128 ~~~~l~C~~~~~~~~--~i~W~~~~~~~~~~~---~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +++.|.|.+.|.|.+  .++|++++..+....   ++..    ...++|.|.+++. .|+|.|+|.|.|..+ ..+..+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g-~~~~~~~   78 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVD-SASASAT   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCC-CEEEEEE
Confidence            468999999998876  689999998765321   2211    1346899999998 999999999999988 5667888


Q ss_pred             EEeecCC
Q psy14532        199 ISVTVPP  205 (258)
Q Consensus       199 l~v~~~p  205 (258)
                      |.|..+|
T Consensus        79 L~V~~~P   85 (85)
T cd05854          79 LVVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            8888765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.47  E-value=1.3e-12  Score=81.35  Aligned_cols=83  Identities=29%  Similarity=0.494  Sum_probs=62.0

Q ss_pred             CcceeeceeeeecCC---CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          3 PQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         3 p~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      |.|..+|.++.+.++   +++.|.|.+.+.|.+.++|++++..+..... ..+                 ...++.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~-~~~-----------------~~~~~~L~i~   63 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD-SRY-----------------SLVGGNLVIS   63 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC-CCE-----------------EEECCEEEEe
Confidence            677778887766554   5799999999999999999999987743210 111                 1235689998


Q ss_pred             ecccCCCceEEEEEEEeCCcceee
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSS  103 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~  103 (258)
                      ++....|+|.|+|.+.|..|...+
T Consensus        64 ~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          64 NPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             cCCccCCCEEEEEEEEcCCCEEEe
Confidence            882358999999999999886653

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.47  E-value=5.4e-13  Score=79.68  Aligned_cols=72  Identities=29%  Similarity=0.498  Sum_probs=57.5

Q ss_pred             CCcEEEEeeeCcccCceEEEEe-CCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+......++|.|.++.. +|.|.|+|.|.|..|. .+..+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTV-KDTGSFTCIASNAAGE-ATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECCh-hhCEEEEEEEECCCCe-EEEEEEEE
Confidence            6789999999999999999997 56555554555556778999999987 9999999999999884 44445444

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.47  E-value=7.3e-13  Score=82.75  Aligned_cols=73  Identities=29%  Similarity=0.533  Sum_probs=56.8

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCC--cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLN--RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      |+.+.|.|.+.|.|.+.++|++++..+...  .++. ..++.|.|.++....|.|.|+|.|.|..|...+..+.|.
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYT-LVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEE-EECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            468999999999999999999999887533  2333 346788887754338999999999999997666665543

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.47  E-value=1e-12  Score=82.94  Aligned_cols=94  Identities=20%  Similarity=0.277  Sum_probs=65.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.|. .+....+.+|+++.|.|.+.+.|.| .+.|++++..+..... .++.+.....        . ....++|.|.+
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~-~r~~i~~~~~--------~-~~~~s~L~I~~   70 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSS-GRYTVETDPS--------P-GGVLSTLTISN   70 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCC-CCEEEEEecC--------C-CceEEEEEECC
Confidence            67775 4567788999999999999999998 6999999987764321 1222211000        0 00123699999


Q ss_pred             cccC-CCceEEEEEEEeCCcceeeceEEE
Q psy14532         81 VQKD-HDRGVYWCTATNKQGRSSSQNVHI  108 (258)
Q Consensus        81 ~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l  108 (258)
                      + .. +|.|.|.|.|.|..|... ..+.|
T Consensus        71 v-~~~d~~G~Y~C~A~N~~G~~~-~~~~L   97 (98)
T cd05758          71 T-QESDFQTSYNCTAWNSFGSGT-AIISL   97 (98)
T ss_pred             c-cccccceeEEEEEEcCCCccc-EEEEe
Confidence            9 77 559999999999998766 44443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.47  E-value=7.5e-13  Score=83.61  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecc-cceeeccccccceeeeeCCcEEEeecccC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      ..++.+..+.+|++|.|.|.........+.|+|+..... ......+... ........+..|..+..+++|.|.++ +.
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~-~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v-~~   79 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSP-NFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNV-TQ   79 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCC-CEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecC-Cc
Confidence            345667788999999999976544455899999632111 1011111111 12233445678888999999999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .|+|.|+|.+.+.........+.|.
T Consensus        80 ~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          80 KDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             ccCEEEEEEEEeCCccEEEEEEEEE
Confidence            9999999999987754443555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=7.8e-13  Score=79.85  Aligned_cols=69  Identities=29%  Similarity=0.521  Sum_probs=57.4

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ....+.+|+.+.|.|.+.+. .+.+.|++++..+....+..+ ..+.|.|.++.. +|+|.|+|.+.|..+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~-~~~~L~I~~~~~-~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI-TGEEVQIKDAVP-RDSGLYACVTSSPSGS   70 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE-eCCEEEECCCCh-hhCEEEEEEEeCCCCc
Confidence            34567899999999999885 568999999998877666655 356899999997 9999999999998764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=7.5e-13  Score=82.07  Aligned_cols=85  Identities=24%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCE----eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGY----PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      |++++|.|.+.+.|.|.|+|+|++.    .+..... ......     .. ............|.|.++ +.+|+|.|+|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~-~~~~~~-----~~-~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C   72 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGL-PYVTVL-----KV-AGINTTDNESEVLYLRNV-SFDDAGEYTC   72 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCC-ceEEEE-----Ee-cCCcccccccceEEEecc-ccccCcEEEE
Confidence            7899999999999999999999642    2111100 000000     00 000001112347899999 9999999999


Q ss_pred             EEEeCCcceeeceEEEEE
Q psy14532         93 TATNKQGRSSSQNVHISV  110 (258)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v  110 (258)
                      .|.|..|... .++.|.|
T Consensus        73 ~A~N~~G~~~-~sa~L~V   89 (90)
T cd04974          73 LAGNSIGPSH-HSAWLTV   89 (90)
T ss_pred             EeecccCccc-CCEEEEe
Confidence            9999999877 7777776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.46  E-value=4.6e-13  Score=82.21  Aligned_cols=76  Identities=28%  Similarity=0.433  Sum_probs=59.5

Q ss_pred             CcEEEEeeeCcccCc--eEEEEeCCcccCCCcc-------eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        128 EPLYLGCPVAGYPIE--SITWQKGVQQLPLNRR-------QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       128 ~~~~l~C~~~~~~~~--~i~W~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +.+.|.|.+.+.|.+  .+.|++++..+.....       ......+.|.|.+++. .|+|.|+|.|.|..+. .+..+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~-~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDS-LSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCc-EEEEEE
Confidence            468999999998876  6799999887653321       1123457899999998 9999999999998874 567788


Q ss_pred             EEeecCC
Q psy14532        199 ISVTVPP  205 (258)
Q Consensus       199 l~v~~~p  205 (258)
                      |.|..+|
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            8888765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.46  E-value=1e-12  Score=82.93  Aligned_cols=84  Identities=24%  Similarity=0.464  Sum_probs=61.8

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccCC-----CcceEEec---CCeEEEEecccCCCCcEEEEE
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLPL-----NRRQKVFP---NGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~~-----~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      .+..+....+.+|+.+.|.|.+.|.|.|.+.|+++  +..+..     ..++.+..   ...|.|.++.. +|+|.|+|.
T Consensus         4 ~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~   82 (98)
T cd05870           4 HIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKL-SDSGRYDCE   82 (98)
T ss_pred             EEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCc-CCCEEEEEE
Confidence            33445667888999999999999999999999994  332221     12333322   34799999997 999999999


Q ss_pred             EEeCCCCCccceEEEE
Q psy14532        185 ATNKQGRSSSQNVHIS  200 (258)
Q Consensus       185 ~~~~~~~~~~~~~~l~  200 (258)
                      |.|..|. ....+.|.
T Consensus        83 A~N~~G~-~~~~~~l~   97 (98)
T cd05870          83 AASRIGG-HQKSMYLD   97 (98)
T ss_pred             EeccCCc-ceeEEEEe
Confidence            9999984 44555554

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.46  E-value=7.2e-13  Score=80.17  Aligned_cols=76  Identities=22%  Similarity=0.347  Sum_probs=60.1

Q ss_pred             CcEEEEeeeCc--ccCceEEEEeCCcccCCC---cceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        128 EPLYLGCPVAG--YPIESITWQKGVQQLPLN---RRQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       128 ~~~~l~C~~~~--~~~~~i~W~~~~~~~~~~---~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +++.|.|.+.+  .+++.+.|++++..+...   .++..    ...+.|.|.+++. .|+|.|+|.|.+..+ ..+....
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~-~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVD-KLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccC-ceEEEEE
Confidence            46899999976  457799999999988632   23333    2456899999997 999999999999987 4667788


Q ss_pred             EEeecCC
Q psy14532        199 ISVTVPP  205 (258)
Q Consensus       199 l~v~~~p  205 (258)
                      |.|..||
T Consensus        79 L~V~~pP   85 (85)
T cd05853          79 LIVRGPP   85 (85)
T ss_pred             EEEecCC
Confidence            8888776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.45  E-value=6.9e-13  Score=79.65  Aligned_cols=72  Identities=32%  Similarity=0.660  Sum_probs=52.9

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC----CCceEEEEEEE
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD----HDRGVYWCTAT   95 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~d~G~Y~C~~~   95 (258)
                      +.|.|.+.|.|.|.++|+|++..+..... .++..               ...+++|.|.++ ..    +|+|.|.|.+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~-~~~~~---------------~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~   63 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD-PRVTM---------------KPDSGTLVIDNM-NGGRAEDYEGEYQCYAS   63 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCC-CCEEE---------------eCCCCEEEEecc-CCCCCcCCCEEEEEEEE
Confidence            57999999999999999999987754311 11111               123678999887 53    68999999999


Q ss_pred             eCCcceeeceEEE
Q psy14532         96 NKQGRSSSQNVHI  108 (258)
Q Consensus        96 ~~~~~~~~~~~~l  108 (258)
                      |..|...+..+.|
T Consensus        64 N~~G~~~s~~~~l   76 (77)
T cd05733          64 NELGTAISNEIHL   76 (77)
T ss_pred             cCCCcEEccccEE
Confidence            9999776555544

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.45  E-value=6e-13  Score=79.45  Aligned_cols=70  Identities=29%  Similarity=0.548  Sum_probs=55.7

Q ss_pred             cEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        129 PLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       129 ~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      .+.|.|.+.|.|.|.+.|++++..+....+..+..   ...|.|.++.. +|+|.|+|.|.|..|. .+..+.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAER-SDSGKYTLTLKNPAGE-KSATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCc-CcCEEEEEEEECCCcc-EEEEEEEE
Confidence            37899999999999999999998886555554432   34799999997 9999999999999884 44555544

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=7.7e-13  Score=78.41  Aligned_cols=70  Identities=41%  Similarity=0.676  Sum_probs=54.0

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|.+.|+|++..+...    +..               .....++|.|.++ +.+|+|.|+|.+.|..|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~----~~~---------------~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G   60 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD----RTK---------------FENFNKTLKIDNV-SEEDDGEYRCTASNSLG   60 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC----cee---------------EecCCCEEEECCC-CHHHCEEEEEEEEeCCc
Confidence            579999999999999999988765432    000               0112457999999 99999999999999998


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ... ..+.|.|
T Consensus        61 ~~~-~~~~l~V   70 (71)
T cd05731          61 SAR-HTISVTV   70 (71)
T ss_pred             eEE-EEEEEEE
Confidence            766 6666665

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.45  E-value=1.1e-12  Score=82.74  Aligned_cols=85  Identities=29%  Similarity=0.497  Sum_probs=63.1

Q ss_pred             CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-----cceEEec---CCeEEEEecccCCCCcEEEEEE
Q psy14532        114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-----RRQKVFP---NGTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      |.+.......+.+|+.+.|.|.+.|.|.+.+.|++++..+...     .+..+..   .+.|.|.++.. +|.|.|+|.+
T Consensus         3 P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a   81 (96)
T cd05732           3 PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL-TDAGRYDCEA   81 (96)
T ss_pred             ccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCc-CcCEEeEEEE
Confidence            3344455677889999999999999999999999987655432     1222222   24799999997 9999999999


Q ss_pred             EeCCCCCccceEEEE
Q psy14532        186 TNKQGRSSSQNVHIS  200 (258)
Q Consensus       186 ~~~~~~~~~~~~~l~  200 (258)
                      .|..|. .+..+.|.
T Consensus        82 ~N~~G~-~~~s~~l~   95 (96)
T cd05732          82 SNRIGG-DQQSMYLE   95 (96)
T ss_pred             EeCCCC-cEEEEEEe
Confidence            999985 44555554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.44  E-value=9.1e-13  Score=81.05  Aligned_cols=78  Identities=28%  Similarity=0.535  Sum_probs=60.1

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce---EE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ---KV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~---~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      ..+..|+.+.|.|.+.|.|.+.+.|++++..+......   .. .....|.|.++.. +|+|.|+|.+.|..|. ....+
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~   81 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGS-INHTY   81 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCc-ccCEEEEEEEEeCCCE-EEEEE
Confidence            35678999999999999999999999999887654332   11 2234688889987 9999999999999884 44555


Q ss_pred             EEEe
Q psy14532        198 HISV  201 (258)
Q Consensus       198 ~l~v  201 (258)
                      .|.|
T Consensus        82 ~l~v   85 (85)
T cd05857          82 HLDV   85 (85)
T ss_pred             EEEC
Confidence            5543

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.44  E-value=8.6e-13  Score=80.39  Aligned_cols=81  Identities=31%  Similarity=0.468  Sum_probs=55.2

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |+++.|.|.+.+.|.+.+.|+|++..-..      ..+...     ....+......++|.|.++ +.+|+|.|+|.+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~------~~~~~~-----~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N   68 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKEN------LIMRPN-----HVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARN   68 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcc------eeecCC-----cccCCEEEccccEEEEccC-CcccCEEEEEEEec
Confidence            78999999999999999999997321000      000000     0000111223468999999 99999999999999


Q ss_pred             CCcceeeceEEEEE
Q psy14532         97 KQGRSSSQNVHISV  110 (258)
Q Consensus        97 ~~~~~~~~~~~l~v  110 (258)
                      ..|... ..+.|.|
T Consensus        69 ~~G~~~-~~~~l~v   81 (81)
T cd05765          69 SGGLLR-ANFPLSV   81 (81)
T ss_pred             CCceEE-EEEEEeC
Confidence            998766 6666654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.44  E-value=1.5e-12  Score=78.04  Aligned_cols=72  Identities=26%  Similarity=0.505  Sum_probs=51.8

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc----CCCceEEEEEEE
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK----DHDRGVYWCTAT   95 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~d~G~Y~C~~~   95 (258)
                      +.|.|.+.|.|.|.++|+|++..+.... ..++.               ....+++|.|.++ .    .+|+|.|.|.+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~-~~~~~---------------~~~~~~~L~i~~~-~~~~~~~d~G~Y~C~A~   63 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAK-DPRVS---------------MRRRSGTLVIDFS-GGGRPEDYEGEYQCFAR   63 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcC-CCcEE---------------EeCCCceEEEecc-CCCCCCCCCEEEEEEEE
Confidence            5799999999999999999998764321 11111               1123578888876 3    346999999999


Q ss_pred             eCCcceeeceEEE
Q psy14532         96 NKQGRSSSQNVHI  108 (258)
Q Consensus        96 ~~~~~~~~~~~~l  108 (258)
                      |..|...+..+.|
T Consensus        64 N~~G~~~s~~~~~   76 (77)
T cd05875          64 NNLGTALSNKILL   76 (77)
T ss_pred             eccceEEEEEEEE
Confidence            9999776565554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.44  E-value=1.4e-12  Score=80.78  Aligned_cols=87  Identities=22%  Similarity=0.363  Sum_probs=63.0

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .+..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.....               ... ........|.|.++ ..+|+
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~---------------~~~-~~~~~~~~L~I~~~-~~~D~   63 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE---------------PEE-RLLVTEDGLLIRSV-SPADA   63 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC---------------cCc-eEEEcCCCEEEccC-CHHHC
Confidence            355677899999999999876 7789999999876543310               000 01112346999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEec
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      |.|+|.+.+..+.....++.|.|..
T Consensus        64 G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          64 GVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             EEEEEEEecCccceeEeEEEEEEec
Confidence            9999999987665555777777753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.44  E-value=7.2e-13  Score=79.04  Aligned_cols=69  Identities=35%  Similarity=0.590  Sum_probs=53.2

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCC-cceEEecC--C--eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPN--G--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~--~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+...  +  +|.|.++.. +|+|.|+|.+.|..|. .+..+.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGV-VSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCc-EEEEEEEe
Confidence            479999999999999999999887643 34443322  2  599999987 9999999999999984 43445444

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.44  E-value=4.1e-13  Score=78.68  Aligned_cols=60  Identities=22%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|.|.+.|.|.|.+.|++++.++............+|.|.++.. +|+|.|+|.+.+...
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~a~~~~~   60 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTE-EDAGIYTILLGIKQY   60 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCH-HHCEEEEEEEEcccc
Confidence            368999999999999999999887654222233445899999997 999999999999753

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.44  E-value=1.4e-12  Score=81.17  Aligned_cols=79  Identities=30%  Similarity=0.517  Sum_probs=58.9

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEe-CCcccCCCcceEEecC----CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPN----GTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      ....+..|+.+.|.|.+.|.|. .+.|++ ++..+....+.....+    .+|.|.++.. +|+|.|+|.|.|..+....
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g~~~~   85 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKGTESE   85 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCCCcce
Confidence            4466889999999999999864 999998 5554443333333222    3799999997 9999999999998765555


Q ss_pred             ceEEEE
Q psy14532        195 QNVHIS  200 (258)
Q Consensus       195 ~~~~l~  200 (258)
                      .++.|.
T Consensus        86 ~sv~l~   91 (92)
T cd04977          86 ATVNLK   91 (92)
T ss_pred             eEEEEE
Confidence            666554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.44  E-value=9.4e-13  Score=79.65  Aligned_cols=71  Identities=32%  Similarity=0.677  Sum_probs=55.7

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccC--------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLP--------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ++|.|.+.|.|.|.++|++++....        ...+.....+++|.|.++.. +|.|.|.|.|.|..|...++.+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            4799999999999999999643211        22344445678899999987 99999999999999877677776654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.44  E-value=1.8e-12  Score=83.22  Aligned_cols=79  Identities=28%  Similarity=0.405  Sum_probs=61.1

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEe-------cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVF-------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~-------~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      .|..+.|.|.+.|.|.+.+.|++++..+... .++...       ..+.|.|.++...+|.|.|+|.|.|..|. ....+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEE
Confidence            4678999999999999999999999877532 232211       12468898886338999999999999985 56778


Q ss_pred             EEEeecCC
Q psy14532        198 HISVTVPP  205 (258)
Q Consensus       198 ~l~v~~~p  205 (258)
                      .|.+..+|
T Consensus       101 ~L~~~~~p  108 (109)
T cd05773         101 QLVSTSRP  108 (109)
T ss_pred             EEEecCCC
Confidence            88887766

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.44  E-value=6.3e-13  Score=77.75  Aligned_cols=59  Identities=27%  Similarity=0.353  Sum_probs=49.9

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.|.|.+.|.|.|.+.|++++..+.....  ......|.|.++.. +|+|.|+|.|.|..|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~-~D~G~YtC~a~N~~G~   59 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTE-KDAGNYTVVLTNPITK   59 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCH-HHCEEEEEEEEECCCc
Confidence            36899999999999999999998865433  33456799999987 9999999999999874

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.44  E-value=1.6e-12  Score=76.21  Aligned_cols=62  Identities=26%  Similarity=0.382  Sum_probs=48.4

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      +.|.|.+.|.|.|++.|+|++.++....  ..+.                 ....+|.|.++ ..+|+|.|+|.+.+...
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--~~~~-----------------~~~~~L~I~~v-~~~D~G~YtC~a~~~~~   60 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC--SRYH-----------------VDGYSLVIKDV-TEEDAGIYTILLGIKQY   60 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCC--cEEE-----------------eCCCEEEECcC-CHHHCEEEEEEEEcccc
Confidence            4699999999999999999998875431  1111                 12447999999 99999999999999754


Q ss_pred             ce
Q psy14532        100 RS  101 (258)
Q Consensus       100 ~~  101 (258)
                      ..
T Consensus        61 ~~   62 (72)
T cd07702          61 NL   62 (72)
T ss_pred             ce
Confidence            43

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.43  E-value=1.4e-12  Score=77.78  Aligned_cols=75  Identities=24%  Similarity=0.391  Sum_probs=53.2

Q ss_pred             EEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcce
Q psy14532         22 LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS  101 (258)
Q Consensus        22 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~  101 (258)
                      |.|.+.|.|.|.++|+|+|.++....... ..+..          .......++|.|.++ ...|+|.|+|.|.|..|..
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~-~~~~~----------~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~   70 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYIC-TKIHV----------INNTEYHGCLQLDNP-THLNNGIYTLVAKNEYGED   70 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCccee-eeeEe----------ecccceEEEEEECCC-CcccCEEEEEEEEcCCccc
Confidence            78999999999999999999986541110 00000          000112457999999 9999999999999999976


Q ss_pred             eeceEEEE
Q psy14532        102 SSQNVHIS  109 (258)
Q Consensus       102 ~~~~~~l~  109 (258)
                      . .++.+.
T Consensus        71 ~-~~~~~~   77 (79)
T cd05855          71 E-KNVSAH   77 (79)
T ss_pred             c-eEEEee
Confidence            6 555443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=9.2e-13  Score=77.47  Aligned_cols=68  Identities=29%  Similarity=0.612  Sum_probs=54.0

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      +.|.|.+.|.|.|.+.|++++..+... +......+.|.|.++.. +|+|.|+|.+.|..|. ....+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEILDDKSLKIRNVTA-GDEGSYTCEAENMVGK-IEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEeeCCEEEECcCCh-hHCEEEEEEEEcCCCc-EEEEEEEE
Confidence            478999999999999999997766433 34445677899999997 9999999999999884 44444443

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.43  E-value=1.2e-12  Score=79.09  Aligned_cols=79  Identities=33%  Similarity=0.596  Sum_probs=54.7

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      |+|.|.+.|.|.|.+.|++++......   ....        .....+.....+++|.|.++ ..+|+|.|.|.+.|..|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~---~~~~--------~~~~~r~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G   68 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQ---HTHT--------CCLAGRIQLLSNGSLLIKHV-LEEDSGYYLCKVSNDVG   68 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccc---cccc--------cccCCCEEEecCCeEEECcC-CcccCEEEEEEEEeCCC
Confidence            589999999999999999964321110   0000        00111222335688999999 99999999999999998


Q ss_pred             ceeeceEEEEE
Q psy14532        100 RSSSQNVHISV  110 (258)
Q Consensus       100 ~~~~~~~~l~v  110 (258)
                      ...+..+.|+|
T Consensus        69 ~~~s~~~~l~~   79 (79)
T cd05734          69 ADASKSMVLTV   79 (79)
T ss_pred             CCCceEEEEeC
Confidence            77657766654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.43  E-value=2.4e-12  Score=81.07  Aligned_cols=77  Identities=30%  Similarity=0.527  Sum_probs=57.5

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-----ceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-----~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ..+..|+.+.|.|.+.|.|.|.++|++++..+....     ++.+...   +.|.|.++.. +|+|.|+|.|.|..|. .
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~   89 (97)
T cd05869          12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQY-TDAGEYLCTASNTIGQ-D   89 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCcc-CcCEEEEEEEecCCCC-e
Confidence            344558999999999999999999999876654321     2222222   4799999987 9999999999999984 4


Q ss_pred             cceEEEE
Q psy14532        194 SQNVHIS  200 (258)
Q Consensus       194 ~~~~~l~  200 (258)
                      +..+.|.
T Consensus        90 ~~~~~l~   96 (97)
T cd05869          90 SQSMYLE   96 (97)
T ss_pred             eEEEEEE
Confidence            4555554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.43  E-value=5.9e-13  Score=78.91  Aligned_cols=70  Identities=37%  Similarity=0.611  Sum_probs=53.9

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +.|.|.+.|.|.|.+.|++++..+...........+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSE-EDDGEYRCTASNSLGS-ARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCH-HHCEEEEEEEEeCCce-EEEEEEEEE
Confidence            478999999999999999988766543322233456899999997 9999999999999883 445555544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.43  E-value=1.8e-12  Score=77.64  Aligned_cols=72  Identities=35%  Similarity=0.606  Sum_probs=51.3

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC----CCceEEEEEEE
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD----HDRGVYWCTAT   95 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~d~G~Y~C~~~   95 (258)
                      +.|.|.+.|.|.|+++|+|++..+..... ....               ....+++|.|..+ ..    .|+|.|+|.|.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~-~~~~---------------~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~   63 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD-PKVT---------------MKPNTGTLVINIM-NGEKAEAYEGVYQCTAR   63 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCC-CCEE---------------EeCCCceEEEecc-ccCCCCCCCEEEEEEEE
Confidence            57999999999999999999887643210 1111               1123567888777 53    37899999999


Q ss_pred             eCCcceeeceEEE
Q psy14532         96 NKQGRSSSQNVHI  108 (258)
Q Consensus        96 ~~~~~~~~~~~~l  108 (258)
                      |..|...+..+.|
T Consensus        64 N~~G~~~s~~~~~   76 (77)
T cd05874          64 NERGAAVSNNIVI   76 (77)
T ss_pred             cCCCeEEeeEEEE
Confidence            9998776555544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.42  E-value=1.8e-12  Score=77.86  Aligned_cols=72  Identities=28%  Similarity=0.493  Sum_probs=55.7

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCc-ceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCCCCc-cceEEEEee
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNR-RQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISVT  202 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~-~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v~  202 (258)
                      ++|.|.+.|.|.|.+.|++++..+.... ...+. ..+.|.|.++.. +|+|.|.|.+.|..|... +..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4799999999999999999998875443 22232 345899999997 999999999999988543 456666653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.42  E-value=6.4e-13  Score=82.75  Aligned_cols=81  Identities=31%  Similarity=0.586  Sum_probs=65.1

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+.   ....|.|.++.. +|+|.|+|.+.+..+. ..
T Consensus         6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~n~~g~-~~   83 (90)
T PF07679_consen    6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTR-EDAGTYTCVASNSSGE-AT   83 (90)
T ss_dssp             ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESG-GGSEEEEEEEEETTEE-EE
T ss_pred             ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCCh-hhCEEEEEEEEECCCE-EE
Confidence            356678899999999999999999999999999888776555543   234799999997 9999999999999763 33


Q ss_pred             ceEEEE
Q psy14532        195 QNVHIS  200 (258)
Q Consensus       195 ~~~~l~  200 (258)
                      ..+.|.
T Consensus        84 ~~~~l~   89 (90)
T PF07679_consen   84 ASVNLT   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.41  E-value=2.3e-12  Score=77.82  Aligned_cols=77  Identities=22%  Similarity=0.365  Sum_probs=53.5

Q ss_pred             EEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcce
Q psy14532         22 LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS  101 (258)
Q Consensus        22 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~  101 (258)
                      |.|.+.|.|.|.++|+|+|+.+...... ......        .........++|.|.++ +..|+|.|+|.|.|..|..
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~-~~~~~~--------~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~   72 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYI-RTEIHY--------EVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQD   72 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCce-eEEEEe--------ecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCe
Confidence            6899999999999999999988654210 000000        00001112457999999 9999999999999999887


Q ss_pred             eeceEEEE
Q psy14532        102 SSQNVHIS  109 (258)
Q Consensus       102 ~~~~~~l~  109 (258)
                      . ..+.|.
T Consensus        73 ~-~~~~~~   79 (81)
T cd04971          73 S-KSISAH   79 (81)
T ss_pred             e-eEEEee
Confidence            6 555543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.41  E-value=3.2e-12  Score=80.64  Aligned_cols=79  Identities=28%  Similarity=0.363  Sum_probs=60.5

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCC--cceEEecC-------CeEEEEecccCCCCcEEE
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLN--RRQKVFPN-------GTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~--~~~~~~~~-------~~l~i~~~~~~~~~g~y~  182 (258)
                      +|.+.......+..|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+...       +.|.|.++..++|.|.|+
T Consensus         2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~   81 (98)
T cd05758           2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN   81 (98)
T ss_pred             CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence            344444556678899999999999999988 69999998877543  34444332       369999998635589999


Q ss_pred             EEEEeCCCC
Q psy14532        183 CTATNKQGR  191 (258)
Q Consensus       183 C~~~~~~~~  191 (258)
                      |.|.|..|.
T Consensus        82 C~A~N~~G~   90 (98)
T cd05758          82 CTAWNSFGS   90 (98)
T ss_pred             EEEEcCCCc
Confidence            999999985

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.41  E-value=1.6e-12  Score=78.30  Aligned_cols=75  Identities=23%  Similarity=0.393  Sum_probs=57.7

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+..|+.+.|.|.+.|.|.| .|.|++++..+...  . ....+.|.|..+   .|.|.|.|.|.|..|...++..
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~-~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~~s~~a   78 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P-APSPSVLNVPGL---NETSKFSCEAHNAKGVTTSRTG   78 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C-CCCCCEEEEccc---cCCeEEEEEEEeccCcEEeeeE
Confidence            456778899999999999999999 79999999877541  1 123456888765   4679999999999986555544


Q ss_pred             EE
Q psy14532        198 HI  199 (258)
Q Consensus       198 ~l  199 (258)
                      +|
T Consensus        79 ~~   80 (81)
T cd05749          79 TV   80 (81)
T ss_pred             Ee
Confidence            43

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.41  E-value=4.8e-12  Score=75.96  Aligned_cols=73  Identities=30%  Similarity=0.551  Sum_probs=56.0

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC-CcEEEeecccCCCceEEEEEEEeCC
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      +.|.|.+.+.|.+.+.|+|++..+..... .++                ....+ ..|.|.++ ..+|.|.|+|.+.|..
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~-~~~----------------~~~~~~~~l~I~~~-~~~D~G~Y~C~a~N~~   62 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLS-KQL----------------TLIANGSELHISNV-RYEDTGAYTCIAKNEA   62 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCC-ccE----------------EEeCCCCEEEECcC-CcccCEEEEEEEEcCC
Confidence            46999999999999999999887754311 111                11122 35899999 9999999999999999


Q ss_pred             cceeeceEEEEEe
Q psy14532         99 GRSSSQNVHISVT  111 (258)
Q Consensus        99 ~~~~~~~~~l~v~  111 (258)
                      |... ..+.|.|.
T Consensus        63 G~~~-~~~~l~V~   74 (76)
T cd05736          63 GVDE-DISSLFVE   74 (76)
T ss_pred             CCcc-eEEEEEEE
Confidence            8877 77777775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.41  E-value=4.1e-12  Score=77.19  Aligned_cols=70  Identities=30%  Similarity=0.491  Sum_probs=55.6

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .|.+..+.+|+++.|.|.+.+ +.+.+.|+++|.++....  .++                 ...++.|.|.++ +.+|+
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~--~r~-----------------~~~~~~L~I~nv-~~~Ds   60 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES--AKY-----------------LLYRDGLLIFNA-SEADA   60 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC--ceE-----------------EEECCcEEEeCC-CHHHC
Confidence            467788999999999999764 567999999999876431  111                 123567999999 99999


Q ss_pred             eEEEEEEEeCC
Q psy14532         88 GVYWCTATNKQ   98 (258)
Q Consensus        88 G~Y~C~~~~~~   98 (258)
                      |.|+|.+....
T Consensus        61 G~Y~C~a~e~~   71 (87)
T cd05873          61 GRYQCLSVEKS   71 (87)
T ss_pred             EEEEEEEEecc
Confidence            99999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.40  E-value=1.6e-12  Score=78.38  Aligned_cols=65  Identities=32%  Similarity=0.615  Sum_probs=53.5

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+..   .+.|.|.++.. +|.|.|+|.+.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKE-SDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCCh-HHCEEEEEEEEecCCEE
Confidence            6789999999999999999999987776555444332   24799999997 99999999999998743

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.40  E-value=1.5e-12  Score=77.68  Aligned_cols=67  Identities=22%  Similarity=0.320  Sum_probs=51.9

Q ss_pred             EEeeeCcccCceEEEEeCCcccCCCcceEE--------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        132 LGCPVAGYPIESITWQKGVQQLPLNRRQKV--------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       132 l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      |.|.+.|.|.|.++|++++..+........        ...+.|.|.++.. +|+|.|+|.|.|..|+ .+..+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~-~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGE-DEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCcc-cceEEEee
Confidence            678999999999999999998875543211        1234799999997 9999999999999984 44444443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.40  E-value=2.2e-12  Score=79.24  Aligned_cols=78  Identities=29%  Similarity=0.439  Sum_probs=60.2

Q ss_pred             eeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      +..|....+.+|++++|.|.+.+ .+.+.+.|++++..+...                      ....++.|.|.++ +.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------------------~~~~~~~L~I~~v-~~   61 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----------------------AMDFNGILTIRNV-QL   61 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----------------------ccccCCEEEECCC-CH
Confidence            45667788999999999999865 677899999987543221                      0112568999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVH  107 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~  107 (258)
                      +|+|.|.|.+.|..|... ..+.
T Consensus        62 ~DsG~Y~C~a~n~~g~~~-~~~~   83 (85)
T cd05754          62 SDAGTYVCTGSNMLDTDE-ATAT   83 (85)
T ss_pred             HHCEEEEEEEeccCCeEe-EEEE
Confidence            999999999999887665 4443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.40  E-value=3e-12  Score=79.44  Aligned_cols=85  Identities=24%  Similarity=0.320  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCC----EeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDG----YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      |+++.|.|.+.+.|.|.+.|+|++    ..+..... .......    ....  ........+|.|.++ +.+|+|.|+|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~-~~~~~~~----~~~~--~~~~~~~~~L~I~~v-~~~D~G~Y~C   72 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGL-PYVTVLK----TAGV--NTTDKEMEVLYLRNV-TFEDAGEYTC   72 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCC-eeEEEec----cCCc--eecCCceeEEEEccC-CHHHCEEEEE
Confidence            789999999999999999999853    32221100 0000000    0000  000001247999999 9999999999


Q ss_pred             EEEeCCcceeeceEEEEE
Q psy14532         93 TATNKQGRSSSQNVHISV  110 (258)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v  110 (258)
                      .+.|..|... .++.|.|
T Consensus        73 ~A~N~~G~~~-~~a~L~V   89 (90)
T cd05858          73 LAGNSIGISH-HSAWLTV   89 (90)
T ss_pred             EEEeCCCccc-ceEEEEE
Confidence            9999999876 7777776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.39  E-value=2.1e-12  Score=78.92  Aligned_cols=76  Identities=25%  Similarity=0.444  Sum_probs=58.2

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      ....|+.+.|.|.+.+.|.+.+.|++++..+........ .....|.|.++.. +|+|.|+|.+.|..|. ....+.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKP-EDSGKYTCHVSNRAGE-INATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCCh-hhCEEEEEEEEcCCcc-EEEEEEEe
Confidence            456789999999999999999999999887754432222 2235799999997 9999999999999884 44444443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.38  E-value=5.4e-12  Score=76.67  Aligned_cols=80  Identities=35%  Similarity=0.698  Sum_probs=60.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+  ..+.+|++++|.|.+.+.+...+.|++++..+...                          ...+.|.++
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------------------------~~~~~~~~~   52 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------------------------QNGLFIPNV   52 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------------------------SSEEEESSE
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------------------------eeeeeeeee
Confidence            46666555  66889999999999998888899999988665522                          112677888


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       ..+|.|.|+|.+.+..+...+..+.|.|
T Consensus        53 -~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   53 -SPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             -EGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -ccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence             8999999999999976655556666664

...

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.37  E-value=2.7e-12  Score=77.51  Aligned_cols=68  Identities=22%  Similarity=0.331  Sum_probs=51.8

Q ss_pred             EEEeeeCcccCceEEEEeCCcccCCCcceEE----------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKV----------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       131 ~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      .|.|.+.|.|.|.++|++++..+........          ...+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~-~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQ-DSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCC-eeeEEEee
Confidence            3689999999999999999988875543221          1134699999997 9999999999999984 44444443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.37  E-value=4.4e-12  Score=78.92  Aligned_cols=78  Identities=22%  Similarity=0.424  Sum_probs=57.9

Q ss_pred             CcceecCCcEEEEeeeCc-----ccCceEEEEeCCcccCCC--cceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQLPLN--RRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|++++..+...  ...++ ..++.|.|.++.. +|+|.|+|.+.|..+. 
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~-~DsG~Y~C~~~N~~g~-   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAAL-EDSGLYTCVVRNSTYC-   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCc-ccCeEEEEEEcCCCcc-
Confidence            455778999999999988     678899999998764321  11222 2357899999997 9999999999998774 


Q ss_pred             ccceEEEE
Q psy14532        193 SSQNVHIS  200 (258)
Q Consensus       193 ~~~~~~l~  200 (258)
                      .+..+.|.
T Consensus        86 ~~~~~~L~   93 (94)
T cd05756          86 MKVSISLT   93 (94)
T ss_pred             EEEEEEEE
Confidence            33444444

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.36  E-value=4.3e-12  Score=76.03  Aligned_cols=70  Identities=29%  Similarity=0.575  Sum_probs=51.8

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCC--cceEE-ecCCeEEEEeccc---CCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLN--RRQKV-FPNGTLLIENVQK---DHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~---~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      +.|.|.+.|.|.|.++|++++..+...  ....+ ..+++|.|..+..   +.|.|.|+|.|.|..|...++.+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            479999999999999999998876322  22333 3467888877754   1378999999999998766655544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.36  E-value=7.6e-12  Score=74.86  Aligned_cols=70  Identities=37%  Similarity=0.603  Sum_probs=52.3

Q ss_pred             EEEEeeeCcccCceEEEEeCCccc-CC--CcceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQL-PL--NRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~-~~--~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +.|.|.+.|.|.|.++|++++... ..  ..+... ...+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~-~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKI-EDTGVYSCTAQNTAGS-ISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCc-ccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence            468999999999999999987632 21  222333 2346799999997 9999999999999884 445566654

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.36  E-value=4e-12  Score=79.07  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      .++.+.+|+++.|.|.+.+.|.+.+.|++++..+....  ........+.     ..........+|.|.++ +.+|+|.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~--~~~~~~~~r~-----~~~~~~~~~~~L~I~nV-~~~D~G~   76 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFG--EKRALRDNRI-----QLVKSTPTELIISISNV-QLSDEGE   76 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeC--CeEEEeCCeE-----EEEeCCCceEEEEECCC-CcccCEE
Confidence            56789999999999999999999999999765321100  0000000000     00000012358999999 9999999


Q ss_pred             EEEEEEeC
Q psy14532         90 YWCTATNK   97 (258)
Q Consensus        90 Y~C~~~~~   97 (258)
                      |+|.+...
T Consensus        77 YtC~~~t~   84 (95)
T cd05882          77 YTCSIFTM   84 (95)
T ss_pred             EEEEEEee
Confidence            99999873

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.35  E-value=5.1e-12  Score=75.71  Aligned_cols=69  Identities=30%  Similarity=0.456  Sum_probs=50.8

Q ss_pred             eEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      +.|.|.+.+ .|.+.+.|+|++..+..........+.             .....++|.|.++ +.+|+|.|+|.+.|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~-------------~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~   66 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR-------------NKKKNSELQINKA-KLADSGEYTCVVENIL   66 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE-------------ecCceEEEEEccC-CcccCeEEEEEEEEcC
Confidence            479999999 899999999999877654211110010             0012357999999 9999999999999998


Q ss_pred             ccee
Q psy14532         99 GRSS  102 (258)
Q Consensus        99 ~~~~  102 (258)
                      |...
T Consensus        67 G~~~   70 (75)
T cd05750          67 GNDT   70 (75)
T ss_pred             Ccee
Confidence            8765

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.35  E-value=6.4e-12  Score=75.27  Aligned_cols=70  Identities=23%  Similarity=0.485  Sum_probs=52.3

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccC--CCcceEE-ecCCeEEEEecc---cCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLP--LNRRQKV-FPNGTLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~--~~~~~~~-~~~~~l~i~~~~---~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      +.|.|.+.|.|.|.++|++++..+.  ...+..+ ..+++|.|..+.   .++|.|.|+|.|.|..|...+..+.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            4689999999999999999998653  2333333 356788888753   22579999999999998766665544

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.35  E-value=7.7e-12  Score=76.58  Aligned_cols=81  Identities=17%  Similarity=0.305  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         17 GPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        17 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      |++++|.|.+.+.  |.+.+.|++++..+.........           ..........++|.|.++ +..|+|.|+|.+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~L~I~~v-~~~DsG~Y~C~a   68 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-----------QSLSEATELSSTLTIPNA-TLKDSGTYTCAA   68 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-----------cccccceEEEEEEEECCC-ChhhCEEEEEEE
Confidence            7899999999998  78899999877654322110000           000001112457999999 999999999999


Q ss_pred             EeCCcceeeceEEEEE
Q psy14532         95 TNKQGRSSSQNVHISV  110 (258)
Q Consensus        95 ~~~~~~~~~~~~~l~v  110 (258)
                      .+..+... .+..|.|
T Consensus        69 ~n~~~~~~-~s~~v~v   83 (84)
T cd05742          69 SSGTMDQK-ESTKVNI   83 (84)
T ss_pred             ccCCCceE-EEEEEEE
Confidence            99987765 5666654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.35  E-value=8.3e-12  Score=73.03  Aligned_cols=61  Identities=26%  Similarity=0.509  Sum_probs=48.7

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      |+.+.|.|.+.|.|.|.|.|++++..+........ ....|.|.++   .|.|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~---~d~G~Y~C~A~N~~G~   61 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNI---YESANYTCVAISSLGM   61 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEecc---ccCeeEEEEEEeCCCE
Confidence            67899999999999999999999987755443322 3446888775   4689999999999884

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.34  E-value=1.9e-11  Score=74.61  Aligned_cols=81  Identities=23%  Similarity=0.438  Sum_probs=54.8

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCcccc-ceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHEN-KNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      |++++|.|.+.+.|.+.+.|++.++......... ...+.             ......+|.|.++ +.+|+|.|.|.+.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-------------~~~~~s~L~I~~~-~~~DsG~Y~C~a~   66 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP-------------ATTLRSTLTFPHA-TVEDSGTYECAAH   66 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecC-------------CcEEEEEEEECCC-CcCCCEEEEEEEE
Confidence            7899999999998889999998765322110000 00000             0112457999999 9999999999999


Q ss_pred             eCCc-ceeeceEEEEEe
Q psy14532         96 NKQG-RSSSQNVHISVT  111 (258)
Q Consensus        96 ~~~~-~~~~~~~~l~v~  111 (258)
                      +..+ .....++.|+|.
T Consensus        67 n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          67 ESTQDQKAFKKVNITVH   83 (84)
T ss_pred             ECccCcceeEEEEEEEe
Confidence            8765 223377777775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.34  E-value=1.4e-11  Score=76.35  Aligned_cols=73  Identities=27%  Similarity=0.393  Sum_probs=52.7

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCC----cccCCCc--ceEE----------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGV----QQLPLNR--RQKV----------FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~----~~~~~~~--~~~~----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |+.+.|.|.+.|.|.|.|+|++++    ..+....  ....          .....|.|.++.. +|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence            678999999999999999999963    2221111  1011          1234689999997 999999999999998


Q ss_pred             CCccceEEEEe
Q psy14532        191 RSSSQNVHISV  201 (258)
Q Consensus       191 ~~~~~~~~l~v  201 (258)
                      . ...++.|.|
T Consensus        80 ~-~~~sa~L~V   89 (90)
T cd04974          80 P-SHHSAWLTV   89 (90)
T ss_pred             c-ccCCEEEEe
Confidence            5 445666655

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.34  E-value=1.8e-11  Score=75.26  Aligned_cols=81  Identities=32%  Similarity=0.579  Sum_probs=59.1

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++..+..........               .......|.|.++ ..+|+|.|.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---------------~~~~~~~l~i~~~-~~~d~g~Y~   67 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK---------------VRKKKWTLILESV-VPSDSGKYT   67 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE---------------ccCcEEEEEEeEC-CcccCEEEE
Confidence            456789999999999998889999999987765331100000               0012346889999 999999999


Q ss_pred             EEEEeCCcceeeceEEEE
Q psy14532         92 CTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~  109 (258)
                      |.+.+..|... .++.|.
T Consensus        68 C~~~n~~g~~~-~~~~l~   84 (85)
T cd05729          68 CIVENKYGSIN-HTYKVD   84 (85)
T ss_pred             EEEEECCceEE-EEEEEe
Confidence            99999887755 566554

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.33  E-value=7.2e-12  Score=75.21  Aligned_cols=70  Identities=26%  Similarity=0.566  Sum_probs=52.8

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCC--cceEE-ecCCeEEEEeccc---CCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLN--RRQKV-FPNGTLLIENVQK---DHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~---~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      +.|.|.+.|.|.|.++|++++..+...  ..... ..++.|.|.++..   .+|+|.|+|.|.|..|...+..+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            478999999999999999999876432  23333 3467898888742   2689999999999998766655543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.33  E-value=1.5e-11  Score=76.02  Aligned_cols=71  Identities=30%  Similarity=0.473  Sum_probs=54.8

Q ss_pred             eeeecCCCceEEEEEEeec-----CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532         11 QQTLQPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      .+.+.+|+++.|.|...+.     +.+.+.|+|++.++....   .                 ....++.|.|.++ ..+
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~---~-----------------~~~~~~~L~I~~v-~~~   62 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR---K-----------------RFVKGSKLLIQNV-TEE   62 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc---c-----------------EEecCCEEEEeeC-Chh
Confidence            3568899999999986532     467999999998876431   1                 0114678999999 999


Q ss_pred             CceEEEEEEEeCCccee
Q psy14532         86 DRGVYWCTATNKQGRSS  102 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~  102 (258)
                      |+|.|+|.+.+..+...
T Consensus        63 DsG~YtC~~~n~~~~~~   79 (92)
T cd05757          63 DAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             hCEEEEEEEEecCCCEE
Confidence            99999999998876543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.31  E-value=1.4e-11  Score=74.89  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=55.5

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ....+..|+++.|.|.+.+ +.+.+.|++++..+..........++.|.|.+++. +|+|.|+|.+.+..
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~-~DsG~Y~C~a~e~~   71 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASE-ADAGRYQCLSVEKS   71 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCH-HHCEEEEEEEEecc
Confidence            4567889999999999864 67899999999988765333344667899999997 99999999999863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.31  E-value=1.3e-11  Score=76.37  Aligned_cols=86  Identities=19%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeC-cCCccccceecccceeeccccccceee--eeCCcEEEeecccCCCce
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKV--FPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~d~G   88 (258)
                      +.+.+|++|+|.|...+.+.+.+.|+++++.. ....  ....+........++..+...  ..+.+|.|.++ +.+|+|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~--~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsg   78 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQ--GSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSD   78 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcC--CEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCE
Confidence            45789999999999988888899999876332 2221  111111111111111111111  12346999999 999999


Q ss_pred             EEEEEEEeCCcc
Q psy14532         89 VYWCTATNKQGR  100 (258)
Q Consensus        89 ~Y~C~~~~~~~~  100 (258)
                      .|.|.+.+..+.
T Consensus        79 tY~C~v~~~~~~   90 (94)
T cd07690          79 TYICEVEDKKEE   90 (94)
T ss_pred             EEEEEECCccce
Confidence            999999887653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.31  E-value=1.1e-11  Score=83.47  Aligned_cols=78  Identities=18%  Similarity=0.363  Sum_probs=63.5

Q ss_pred             eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCE
Q psy14532        166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGL  244 (258)
Q Consensus       166 ~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~  244 (258)
                      +|.|.+++. +|+|.|.|.+.+..+. ....+.|.|..+|.+...+.......|+.+.|.|.+.+.+|. +.|.|+++|.
T Consensus         2 sL~i~~v~~-~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTV-HDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCH-HHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            588899998 9999999999987663 567888999999988776654444478999999999655675 6999999986


Q ss_pred             e
Q psy14532        245 P  245 (258)
Q Consensus       245 ~  245 (258)
                      .
T Consensus        80 ~   80 (139)
T cd05771          80 G   80 (139)
T ss_pred             C
Confidence            4

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.31  E-value=3.6e-11  Score=74.76  Aligned_cols=94  Identities=22%  Similarity=0.334  Sum_probs=64.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.| .....+.+.+|+++.|.|.+.+.|.| .+.|.+.+..+.... ..++.+.....         ......+|.|.+
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~-~~r~~I~~~~~---------~~g~~S~L~I~~   70 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT-SERYTVERTST---------GSGVLSTLTINN   70 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC-CCCEEEEEEcc---------CCCcEEEEEECC
Confidence            6777 56677889999999999999777776 689988876554431 12333221100         001234699999


Q ss_pred             cccCCC-ceEEEEEEEeCCcceeeceEEE
Q psy14532         81 VQKDHD-RGVYWCTATNKQGRSSSQNVHI  108 (258)
Q Consensus        81 ~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l  108 (258)
                      + ...| .|.|.|.+.|..|... ..+.|
T Consensus        71 ~-~~~d~~g~Y~C~a~N~~G~d~-~~i~L   97 (98)
T cd05898          71 I-MEADFQTHYNCTAWNSFGSGT-AIIQL   97 (98)
T ss_pred             C-ccccCCcEEEEEEEeCCccce-EEEEe
Confidence            9 7656 8999999999998876 54444

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.31  E-value=1.4e-11  Score=76.98  Aligned_cols=87  Identities=16%  Similarity=0.269  Sum_probs=56.1

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceee----eeCCcEEEeecccC
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV----FPNGTLLIENVQKD   84 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~   84 (258)
                      +.++.+.+|++++|.|.+.+.|.+.+.|++.+..+....  ......         ..|...    ....+|.|.++ +.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~--~~~~~~---------~~r~~~~~~~~~~~sL~I~~v-~~   71 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFD--DKKALR---------DNRIELVRASWHELSISISDV-SL   71 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEc--Cccccc---------CCCEEEEECCCCcEEEEECcC-Cc
Confidence            467889999999999999998889999997432111000  000000         011111    12357999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      +|+|.|.|.+...... . ....|.
T Consensus        72 ~DsG~Y~C~~~t~~~~-~-~~~~l~   94 (95)
T cd07701          72 SDEGQYTCSLFTMPVK-T-SKAYLT   94 (95)
T ss_pred             ccCEEEEEEeEeecCc-c-EEEEEE
Confidence            9999999999875433 2 444444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.30  E-value=1.9e-11  Score=75.87  Aligned_cols=73  Identities=27%  Similarity=0.389  Sum_probs=52.8

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCC----cccCCCc--ceEEec----------CCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGV----QQLPLNR--RQKVFP----------NGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~----~~~~~~~--~~~~~~----------~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |+.+.|.|.+.+.|.|.++|+++.    ..+....  ......          .+.|.|.+++. +|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence            678999999999999999999842    2222111  111111          14699999998 999999999999998


Q ss_pred             CCccceEEEEe
Q psy14532        191 RSSSQNVHISV  201 (258)
Q Consensus       191 ~~~~~~~~l~v  201 (258)
                      . ....+.|.|
T Consensus        80 ~-~~~~a~L~V   89 (90)
T cd05858          80 I-SHHSAWLTV   89 (90)
T ss_pred             c-ccceEEEEE
Confidence            4 455566655

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.30  E-value=2.1e-11  Score=74.22  Aligned_cols=72  Identities=40%  Similarity=0.587  Sum_probs=53.2

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCc---cc--CCC---cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQ---QL--PLN---RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~---~~--~~~---~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      |+.+.|.|.+.|.|.|.++|+++..   .+  ...   ........+.|.|.++.. +|+|.|+|.+.|..|. .+..+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~   78 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP-QDAGLYTCTARNSGGL-LRANFP   78 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCc-ccCEEEEEEEecCCce-EEEEEE
Confidence            6889999999999999999999742   11  111   112233456899999998 9999999999999884 445555


Q ss_pred             EE
Q psy14532        199 IS  200 (258)
Q Consensus       199 l~  200 (258)
                      |.
T Consensus        79 l~   80 (81)
T cd05765          79 LS   80 (81)
T ss_pred             Ee
Confidence            54

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.30  E-value=2.1e-11  Score=76.12  Aligned_cols=91  Identities=20%  Similarity=0.326  Sum_probs=61.3

Q ss_pred             CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |++|+|.|.........+.|++............ ............+..|..+..+++|.|.++ +.+|+|.|+|.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l-~~~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIAS-YIATNSTVFGPAYSGRETIYPNGSLLIQNL-TKEDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEE-EecCCceeECCCcCCeEEEcCCceEEEccC-CchhcEEEEEEEEc
Confidence            7899999988765566999999754332211000 001122222334566777777899999999 99999999999998


Q ss_pred             CCcceeeceEEEE
Q psy14532         97 KQGRSSSQNVHIS  109 (258)
Q Consensus        97 ~~~~~~~~~~~l~  109 (258)
                      ..+......+.|.
T Consensus        79 ~~~~~~~~~~~l~   91 (92)
T cd05741          79 TNGVTENAKFFLR   91 (92)
T ss_pred             CCCcEEEEEEEEE
Confidence            8765554555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.29  E-value=2.3e-11  Score=75.63  Aligned_cols=68  Identities=28%  Similarity=0.445  Sum_probs=52.2

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCC--cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLN--RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .|+.+.|.|.+.|.|.+.++|++++..+...  ..+. ..++.|.|.++...+|.|.|+|.|.|..|...+
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            3467999999999999999999999877432  2232 345788888776338999999999999885443

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.29  E-value=3.2e-11  Score=74.68  Aligned_cols=79  Identities=24%  Similarity=0.428  Sum_probs=60.8

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc----ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR----RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ...+.+|+.+.|.|.+.+ |.+.+.|++++..+....    +... ..+.|.|.++.. +|+|.|.|.+.+..+......
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSP-ADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCH-HHCEEEEEEEecCccceeEeE
Confidence            456788999999999877 778999999987765442    2322 345689999997 999999999998765455666


Q ss_pred             EEEEee
Q psy14532        197 VHISVT  202 (258)
Q Consensus       197 ~~l~v~  202 (258)
                      +.|.|.
T Consensus        82 ~~l~V~   87 (89)
T cd04979          82 YSLNVL   87 (89)
T ss_pred             EEEEEe
Confidence            777664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.29  E-value=2.6e-11  Score=72.58  Aligned_cols=71  Identities=25%  Similarity=0.382  Sum_probs=55.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      ++...+.+|+.++|.|.+.+.|. ..+.|++++..+.       .....|.|.++ . +|+|.|+|.+.+.   ..+..+
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-------~~~~~l~i~~~-~-~dsG~Y~C~a~~~---~~S~~v   74 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-------TTTNSYRIRAA-N-NDSGEYRCQTQGS---SLSDPV   74 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-------ccCCeEEEeec-c-cCCEEeEEECCCC---cCCCCE
Confidence            44567889999999999988775 4799999998762       13567899999 6 9999999999875   345555


Q ss_pred             EEEe
Q psy14532        198 HISV  201 (258)
Q Consensus       198 ~l~v  201 (258)
                      .|.|
T Consensus        75 ~l~V   78 (78)
T cd05752          75 HLEV   78 (78)
T ss_pred             EEeC
Confidence            5543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.28  E-value=2.7e-11  Score=73.62  Aligned_cols=75  Identities=27%  Similarity=0.376  Sum_probs=59.7

Q ss_pred             CcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        121 NVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      ...+.+|+.++|.|.+.+ .+...+.|++++..+...     .....|.|.+++. +|+|.|+|.+.+..++..+..+.|
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~s~~~~i   81 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATL-SDSGSYHCSGIIGSYDYSSEPVSI   81 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCH-HHCEEEEEEEEeCCceecCCCEEE
Confidence            346889999999999854 556789999998765421     1346799999998 999999999999988777777776


Q ss_pred             Ee
Q psy14532        200 SV  201 (258)
Q Consensus       200 ~v  201 (258)
                      .|
T Consensus        82 ~~   83 (83)
T cd05753          82 TV   83 (83)
T ss_pred             EC
Confidence            54

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.27  E-value=4.9e-11  Score=71.54  Aligned_cols=71  Identities=28%  Similarity=0.485  Sum_probs=54.8

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +.|.|.+.|.|.|.+.|++++..+....  +.....+ ..|.|.++.. +|.|.|+|.+.|..|. ....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY-EDTGAYTCIAKNEAGV-DEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCc-ccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence            3689999999999999999988775443  2333333 3699999997 9999999999999884 4466666654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>PHA03376 BARF1; Provisional

Probab=99.27  E-value=9.7e-11  Score=79.14  Aligned_cols=133  Identities=18%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             eeeecCCCceEEEEEEee---cCCCeEEEeeCC----EeCcCCccccceecccceeeccccccceee---eeCCcEEEee
Q psy14532         11 QQTLQPGPPVSLKCIATG---NPTPHISWKLDG----YPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIEN   80 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~   80 (258)
                      .+.+..|+.+.|+|....   .+...|+|+|.+    ..+-...  +.....    .+..+..+..+   ..+-+|.|.+
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~--ggdVv~----~QmEyRGrtD~~~~~gnvsLvI~~   93 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRM--HHDVIF----IEWPFRGFFDIHRSANTFFLVVTA   93 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEc--CCeeee----eeeccccEEEEEecCCeEEEEEEe
Confidence            567889999999998652   245589999953    2111110  111111    11122223222   2345789999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ  151 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~  151 (258)
                      + +.+|.|+|+|.+........ +.-.|.+..+-.+.. ........-+...+.|.+.|+|.|.+.|..+..
T Consensus        94 l-~lSDdGtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         94 A-NISHDGNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             e-eecCCceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            9 99999999999987654333 222333332211111 000011124667899998889999999987654

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.27  E-value=1.9e-11  Score=75.37  Aligned_cols=73  Identities=26%  Similarity=0.406  Sum_probs=54.0

Q ss_pred             eeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ....+.+|+.++|.|.. .+.|.+.+.|++++.++.... ..+               +.....+|.|.|.++ +.+|+|
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~-d~r---------------~~~~~~~G~L~fs~v-~~~D~g   73 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPE-DGR---------------RFVSQTNGNLYIAKV-EASDRG   73 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccccccc-CCC---------------eEEeCCCCcEEEeec-CHhhCc
Confidence            44668899999999975 457889999999975432211 011               111224789999999 999999


Q ss_pred             EEEEEEEeCCc
Q psy14532         89 VYWCTATNKQG   99 (258)
Q Consensus        89 ~Y~C~~~~~~~   99 (258)
                      .|.|.|.+...
T Consensus        74 ~Y~C~A~n~~~   84 (96)
T cd05727          74 NYSCFVSSPSS   84 (96)
T ss_pred             eeEEEEEeccc
Confidence            99999998754

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.26  E-value=2.6e-11  Score=74.58  Aligned_cols=79  Identities=23%  Similarity=0.304  Sum_probs=59.6

Q ss_pred             CCcce-eeceeeeecCCCceEEEEE-EeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      .|.|. .....+.+.+|+.+.|.|. ..+.|.+.+.|++++......                  ..|..+..+|.|.|.
T Consensus         2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~------------------~~Ri~~~~~GnL~fs   63 (95)
T cd05845           2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ------------------DERVSMGQNGNLYFA   63 (95)
T ss_pred             CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc------------------cccEEECCCceEEEE
Confidence            45553 3457788999999999997 588899999999765322111                  123344467999999


Q ss_pred             ecccCCCce-EEEEEEEeCCc
Q psy14532         80 NVQKDHDRG-VYWCTATNKQG   99 (258)
Q Consensus        80 ~~~~~~d~G-~Y~C~~~~~~~   99 (258)
                      ++ ...|.| .|.|.+.+...
T Consensus        64 ~v-~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          64 NV-EEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             EE-ehhhCCCCeEEEEEcccc
Confidence            99 999999 89999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.25  E-value=2.7e-11  Score=72.57  Aligned_cols=61  Identities=28%  Similarity=0.513  Sum_probs=49.0

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCcceE---E---ecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQK---V---FPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~---~---~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.|.|.+.+ .|.+.+.|++++..+.......   +   ...+.|.|.++.. +|.|.|+|.|.|..|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~   68 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKL-ADSGEYTCVVENILGN   68 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCc-ccCeEEEEEEEEcCCc
Confidence            468999999 8999999999998876543322   2   1235799999997 9999999999999884

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.24  E-value=5.6e-11  Score=71.27  Aligned_cols=69  Identities=26%  Similarity=0.472  Sum_probs=48.3

Q ss_pred             eEEEEEEee-cCCCeEEEeeCCEeCcCCcc-ccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRH-ENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      +.|.|.+.+ .|.+.+.|+++++.+..... ..++.+.             .....++|.|.++ ...|+|.|+|.+.|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-------------~~~~~~~L~I~~~-~~~DsG~Y~C~a~N~   66 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-------------KKKKSSELQISKA-SLADNGEYKCMVSSK   66 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-------------eCCcEEEEEECcC-CcccCEEEEEEEEeC
Confidence            579999865 57789999999887753210 0111100             0112357999999 999999999999999


Q ss_pred             Cccee
Q psy14532         98 QGRSS  102 (258)
Q Consensus        98 ~~~~~  102 (258)
                      .|...
T Consensus        67 ~g~~~   71 (76)
T cd05895          67 LGNDS   71 (76)
T ss_pred             CCcee
Confidence            87655

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.22  E-value=9.4e-11  Score=72.30  Aligned_cols=70  Identities=30%  Similarity=0.419  Sum_probs=55.7

Q ss_pred             CCcceecCCcEEEEeee-CcccCceEEEEeCCccc--CCCcceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        120 GNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQL--PLNRRQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~--~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ....+.+|+.+.|.|.. .+.|.+.+.|++++...  ....+..+. .+|.|.+.++.. +|.|.|+|.|.|...
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~-~D~g~Y~C~A~n~~~   84 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEA-SDRGNYSCFVSSPSS   84 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCH-hhCceeEEEEEeccc
Confidence            34568899999999976 67899999999997653  223333343 479999999998 999999999999864

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.21  E-value=1.7e-10  Score=71.29  Aligned_cols=72  Identities=22%  Similarity=0.253  Sum_probs=51.8

Q ss_pred             eeeecCCCceEEEEEE-e----ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532         11 QQTLQPGPPVSLKCIA-T----GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~-~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      .+.+.+|.+..|.|.- .    ..+.+.+.|||++.++.....  +...               ......|.|.++ ..+
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~--~~~~---------------~~~~~~L~I~~v-~~~   65 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNE--KFYS---------------LKGSTYLHIIDV-SLN   65 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCc--ceEe---------------cCCCCEEEEEEc-Chh
Confidence            3567899999999973 2    235669999999988764311  1100               011346999999 999


Q ss_pred             CceEEEEEEEeCCcc
Q psy14532         86 DRGVYWCTATNKQGR  100 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~  100 (258)
                      |+|.|+|.+.+..+.
T Consensus        66 D~G~YtC~~~~~~~g   80 (95)
T cd05897          66 DSGYYTCKLQFTHEG   80 (95)
T ss_pred             hCEEEEEEEEEeeCC
Confidence            999999999997644

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.21  E-value=2e-10  Score=71.04  Aligned_cols=85  Identities=18%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      .+.+.+|+++.|.|.. +.|.+.+.||+.+.......     ...        ...+. ...+++|.|.++ +.+|+|.|
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~-----~~~--------~~~r~-~~~~~~L~I~~~-~~~DsG~Y   68 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKE-----EVK--------TEERL-IHTERGLLLRSL-QRSDAGVY   68 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccc-----ccc--------ccccE-EEecCeEEEeeC-ChhHCEEE
Confidence            3567899999999986 47888999998432111000     000        00111 123567999999 99999999


Q ss_pred             EEEEEeCCcceeeceEEEEEe
Q psy14532         91 WCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +|.+.+.........+.|.|.
T Consensus        69 ~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          69 TCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             EEEEEccCCeEEEEEEEEEEe
Confidence            999985433333257777765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.20  E-value=1.9e-10  Score=66.13  Aligned_cols=62  Identities=40%  Similarity=0.706  Sum_probs=48.4

Q ss_pred             CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      +|++++|.|.+.+.+.+.+.|++++..+...   .                 ........|.|.++ ...|+|.|+|.+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---~-----------------~~~~~~~~L~i~~~-~~~d~G~Y~C~~~   59 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPES---N-----------------RLSASGSTLTIKSV-SLEDSGEYTCVAE   59 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCC---C-----------------EEecCCcEEEEeeC-CcccCEEEEEEEe
Confidence            5899999999887888899999988766511   0                 01123567999999 9999999999998


Q ss_pred             eCC
Q psy14532         96 NKQ   98 (258)
Q Consensus        96 ~~~   98 (258)
                      +..
T Consensus        60 n~~   62 (63)
T smart00408       60 NSA   62 (63)
T ss_pred             cCC
Confidence            764

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.19  E-value=1.9e-10  Score=71.12  Aligned_cols=68  Identities=24%  Similarity=0.413  Sum_probs=54.6

Q ss_pred             cceecCCcEEEEeeeCc-c----cCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        122 VSAIAGEPLYLGCPVAG-Y----PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-~----~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ..+..|....|.|...+ .    |.+.+.|++++..+....... ..++.|.|.++.. +|+|.|+|.+.+..+.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~-~DsG~YtC~~~n~~~~   77 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTE-EDAGNYTCKLTFTHNG   77 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCCh-hhCEEEEEEEEecCCC
Confidence            45678899999998643 2    567999999999887554433 3678899999997 9999999999998753

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.18  E-value=1.1e-10  Score=71.40  Aligned_cols=73  Identities=22%  Similarity=0.333  Sum_probs=52.8

Q ss_pred             CCcEEEEeeeCcc--cCceEEEEeCCcccCCCcce----E----EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        127 GEPLYLGCPVAGY--PIESITWQKGVQQLPLNRRQ----K----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       127 g~~~~l~C~~~~~--~~~~i~W~~~~~~~~~~~~~----~----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      |+.+.|.|.+.+.  |.+.+.|.+++.........    .    ....+.|.|.+++. +|+|.|+|.+.|..+. .+.+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~-~~~s   78 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMD-QKES   78 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCc-eEEE
Confidence            6889999999988  78899999876544322110    0    01234799999998 9999999999998874 4455


Q ss_pred             EEEEe
Q psy14532        197 VHISV  201 (258)
Q Consensus       197 ~~l~v  201 (258)
                      ..|.|
T Consensus        79 ~~v~v   83 (84)
T cd05742          79 TKVNI   83 (84)
T ss_pred             EEEEE
Confidence            55544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.18  E-value=5.3e-10  Score=69.53  Aligned_cols=85  Identities=25%  Similarity=0.307  Sum_probs=61.1

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCC--cceEEec-------CCeEEEEecccCCCCcEEE
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLN--RRQKVFP-------NGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~--~~~~~~~-------~~~l~i~~~~~~~~~g~y~  182 (258)
                      +|.+.......+.+|+.+.|.|.+.+.|.| .|.|..++..+...  .++.+..       ...|.|.++...++.|.|.
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~   81 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN   81 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence            455556667788999999999999888876 67888877665432  3444432       2369999987523479999


Q ss_pred             EEEEeCCCCCccceEE
Q psy14532        183 CTATNKQGRSSSQNVH  198 (258)
Q Consensus       183 C~~~~~~~~~~~~~~~  198 (258)
                      |.|.|..|. ....+.
T Consensus        82 C~a~N~~G~-d~~~i~   96 (98)
T cd05898          82 CTAWNSFGS-GTAIIQ   96 (98)
T ss_pred             EEEEeCCcc-ceEEEE
Confidence            999999985 334443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.17  E-value=3.7e-10  Score=69.94  Aligned_cols=85  Identities=13%  Similarity=0.188  Sum_probs=56.6

Q ss_pred             eeeeecCCCceEEEEEEe-----------ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532         10 IQQTLQPGPPVSLKCIAT-----------GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~-----------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ....+.+|+.+.|.|...           ......+.|||++..+.......             +...........|.|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~-------------~~~~Ri~~~~~~Lwf   74 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII-------------FDGVRMSKEEDSIWF   74 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc-------------ccceeEEEeCCEEEE
Confidence            346789999999999861           11233799999875444331100             000112234668999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .++ ..+|+|.|+|++.|...... .++.|+
T Consensus        75 ~Pa-~~eDSG~Y~C~~rN~t~C~~-~~i~l~  103 (104)
T cd05896          75 RPA-ELQDSGLYTCVLRNSTYCMK-VSMSLT  103 (104)
T ss_pred             EeC-ChhhCeEEEEEECCCCcceE-EEEEEE
Confidence            999 99999999999999876555 555554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.17  E-value=2.6e-10  Score=69.97  Aligned_cols=69  Identities=28%  Similarity=0.401  Sum_probs=55.3

Q ss_pred             CCCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +....+.+|+.++|.|.+.+ .|.+.+.|++++..+...   ....++.|.|.++.. +|+|.|.|.+.|..+.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g~   77 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQL-SDAGTYVCTGSNMLDT   77 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCH-HHCEEEEEEEeccCCe
Confidence            45567889999999999865 678899999988665332   223467899999997 9999999999998774

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.16  E-value=2e-10  Score=72.02  Aligned_cols=91  Identities=16%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ..++.+.+|++++|.|.+.+.+.+.+.|++.+..+....  .......     .++..........+|.|.++ +.+|+|
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~--~~~~~~~-----~r~~~~~~~~~~~~L~I~~v-~~~DsG   75 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFN--DKRALRD-----NRIQLVNFSANELSISISNV-SLSDEG   75 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEec--ccccccc-----CcEEEEcCCCCeeEEEEccC-CcccCE
Confidence            356778999999999999887788999986432110000  0000000     00100000112357999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      .|+|.+...... . ..+.|+
T Consensus        76 ~Y~C~~~~~~~~-~-~~~~~~   94 (95)
T cd05717          76 RYTCSLYTMPVQ-T-AKATVT   94 (95)
T ss_pred             EEEEEEecCCCc-e-EEEEEE
Confidence            999999876533 2 444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.15  E-value=2.6e-10  Score=70.19  Aligned_cols=70  Identities=23%  Similarity=0.299  Sum_probs=58.7

Q ss_pred             CCcceecCCcEEEEee-eCcccCceEEEEeCCcc-cCCCcceEEecCCeEEEEecccCCCCc-EEEEEEEeCCC
Q psy14532        120 GNVSAIAGEPLYLGCP-VAGYPIESITWQKGVQQ-LPLNRRQKVFPNGTLLIENVQKDHDRG-VYWCTATNKQG  190 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~-~~~~~~~~i~W~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g-~y~C~~~~~~~  190 (258)
                      ....+.+|+.+.|.|. ..|.|.+.|.|+.++.. +....+..+..+|.|.|.++.. .|.| .|.|.|.+...
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~-~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEE-QDSHPDYICHAHFPGL   83 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEeh-hhCCCCeEEEEEcccc
Confidence            4567889999999997 58899999999986543 4456677777889999999997 9999 79999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.15  E-value=4.5e-10  Score=69.00  Aligned_cols=77  Identities=30%  Similarity=0.481  Sum_probs=57.0

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+........    .....|.|.++.. +|.|.|.|.+.|..+. .+.++
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~-~~~~~   81 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGS-INHTY   81 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCce-EEEEE
Confidence            3456799999999999989899999999877653322221    1123688889987 9999999999998874 44455


Q ss_pred             EEE
Q psy14532        198 HIS  200 (258)
Q Consensus       198 ~l~  200 (258)
                      .|.
T Consensus        82 ~l~   84 (85)
T cd05729          82 KVD   84 (85)
T ss_pred             EEe
Confidence            444

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.15  E-value=3.9e-10  Score=64.80  Aligned_cols=62  Identities=35%  Similarity=0.646  Sum_probs=50.0

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +|+.+.|.|.+.+.+.+.+.|++++..+. ...........|.|.++.. .|.|.|+|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSL-EDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCc-ccCEEEEEEEecCC
Confidence            47889999998888888999999887776 2222334556899999987 99999999998864

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.15  E-value=4e-10  Score=68.75  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=53.2

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCc----ceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCC-CCccceEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR----RQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVH  198 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~----~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~  198 (258)
                      |+++.|.|.+.+.|.+.+.|++.++......    ...+.   ....|.|.+++. +|+|.|.|.+.+... ...+.++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence            7899999999998889999998665322111    11111   134799999997 999999999998754 23455666


Q ss_pred             EEee
Q psy14532        199 ISVT  202 (258)
Q Consensus       199 l~v~  202 (258)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            6654

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.13  E-value=9.5e-10  Score=70.95  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             eceeeeecCCCceEEEEEEeec----CCCeEEEeeCCEeCcCCccccceeccccee-eccccccceee-----eeCCcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN----PTPHISWKLDGYPLAGDRHENKNRIGEARV-QQLPLNRRQKV-----FPNGTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~   77 (258)
                      .+..+.+..|++++|.|.....    +...|.|.+....-........+..+.... ....+.+|...     ..+++|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            4566788999999999998653    335899954211000000001111111111 11223333322     3567899


Q ss_pred             EeecccCCCceEEEEEEEeCCcc
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~  100 (258)
                      |.++ +.+|+|.|+|.+.+..+.
T Consensus        84 I~nv-~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          84 IHNL-DYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             EccC-CcccCEEEEEEEEcCCCc
Confidence            9999 999999999999997763

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=99.12  E-value=3.1e-10  Score=71.25  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             cCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeee-CCcEEEeecccCCCceEEEE
Q psy14532         15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      ..|++|+|.|.... .....+.|++....+.......  ...........+..|..+.. +++|.|.++ +.+|+|.|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~--~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEE--TAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCC--CCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEE
Confidence            47999999998764 4456899998743322111000  00111112223333444433 488999999 9999999999


Q ss_pred             EEEeCCcceeeceEEEEEe
Q psy14532         93 TATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~  111 (258)
                      .+....+......+.|.|+
T Consensus        79 ~v~~~~~~~~~~~f~L~vy   97 (97)
T cd05775          79 EINTKNGVTITKEFTLHIY   97 (97)
T ss_pred             EEEcCCCCeEEEEEEEEeC
Confidence            9998877666677777764

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.12  E-value=1.2e-09  Score=66.89  Aligned_cols=83  Identities=27%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             CCceEEEEEEeecC--CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         17 GPPVSLKCIATGNP--TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        17 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      |++++|.|.+.+.+  ...+.|...++............          ...........+|.|.++ +..|+|.|+|.+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~----------~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a   69 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENR----------RSLQEHTELSSTLTIENV-TLSDLGRYTCTA   69 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccc----------ccccccceeeeEEEEecC-CcccCEEEEEEE
Confidence            78999999998754  45789988765432110000000          000001112457999999 999999999999


Q ss_pred             EeCCcceeeceEEEEEe
Q psy14532         95 TNKQGRSSSQNVHISVT  111 (258)
Q Consensus        95 ~~~~~~~~~~~~~l~v~  111 (258)
                      .+..+... ....|.|+
T Consensus        70 ~n~~~~~~-~~t~~~V~   85 (86)
T cd05862          70 SSGQMIAK-NSTIVIVH   85 (86)
T ss_pred             eecceEec-ccEEEEEe
Confidence            99876555 66677765

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=99.11  E-value=1.2e-09  Score=70.73  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             eceeeeecCCCceEEEEEEeecC----CCeEEEeeC----CEeCcCCccccceecccceeeccccccceee-----eeCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLD----GYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNG   74 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   74 (258)
                      .+..+.+.+|++++|.|.....+    ...+.|++.    +....    ...+..+........+..|...     ..+.
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~----v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~   79 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREES----VFYYHKRPYPPPDGRFKGRVVWDGNIMRRDA   79 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeE----EEEECCCccccCcccccCeEEEecCCcCCce
Confidence            45677899999999999976432    236999852    11100    0001111111111222233222     2356


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcc
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~  100 (258)
                      +|.|.++ +.+|+|.|+|.+.+....
T Consensus        80 sL~I~~v-~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          80 SILIWQL-QPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             EEEEeeC-ChhhCEEEEEEEEeCCCC
Confidence            7999999 999999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.11  E-value=8.6e-10  Score=70.60  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             CCCceEEEEEEeecC------------CCeEEEeeCC--EeCcCCccccceecccceeeccccccceee------eeCCc
Q psy14532         16 PGPPVSLKCIATGNP------------TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGT   75 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~------------~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~   75 (258)
                      .|++|+|.|......            .+.|.|+|..  +......     ...........+.+|..+      ..+.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~-----~~~~~~~~~~~f~~R~sl~~~~~~~~~as   75 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLV-----ATEGKVRVNTEYLDRVSLPNYPAIPSDAT   75 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEE-----EECCeEEECccccCeEEecccCCCCCCcE
Confidence            489999999986432            3589999842  1110000     000000011223333333      24778


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |+|.++ +.+|+|.|+|.+.+...-.. ..+.|.|.
T Consensus        76 L~I~nl-~~sDsG~Y~C~V~~g~~~~~-~~v~l~v~  109 (112)
T cd05900          76 LEITEL-RSNDSGTYRCEVMHGIEDNY-DTVEVQVK  109 (112)
T ss_pred             EEEeec-ccccCEEEEEEEecCCCCce-eEEEEEEE
Confidence            999999 99999999999996654444 66666664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.10  E-value=7.7e-10  Score=68.84  Aligned_cols=68  Identities=25%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccC--------CCcceEEe----cCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--------LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+.        ...++.+.    ....|.|.++.. +|+|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEEe
Confidence            45678899999999999999999999998765321        11222221    134799999998 999999999987


Q ss_pred             C
Q psy14532        188 K  188 (258)
Q Consensus       188 ~  188 (258)
                      .
T Consensus        84 ~   84 (95)
T cd05882          84 M   84 (95)
T ss_pred             e
Confidence            3

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>smart00409 IG Immunoglobulin

Probab=99.10  E-value=2.6e-09  Score=65.43  Aligned_cols=83  Identities=34%  Similarity=0.601  Sum_probs=59.3

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ..+.+.+|+++.|.|.+.+.+...+.|+++ +..+...   .+....             ......+|.|.++ +..|+|
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~---~~~~~~-------------~~~~~~~l~i~~~-~~~d~G   64 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES---GRFSVS-------------RSGSNSTLTISNV-TPEDSG   64 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC---CcEEEE-------------EcCCeeEEEEEee-ccccCe
Confidence            346678999999999998877789999998 6665411   111111             0001357999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .|.|.+.+..+... ..+.|.|
T Consensus        65 ~Y~C~v~~~~~~~~-~~~~l~V   85 (86)
T smart00409       65 TYTCAATNSSGSAS-STTTLTV   85 (86)
T ss_pred             EEEEEEEcCCCeEE-EEEEEEE
Confidence            99999997776655 3366655

>smart00410 IG_like Immunoglobulin like

Probab=99.10  E-value=2.6e-09  Score=65.43  Aligned_cols=83  Identities=34%  Similarity=0.601  Sum_probs=59.3

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ..+.+.+|+++.|.|.+.+.+...+.|+++ +..+...   .+....             ......+|.|.++ +..|+|
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~---~~~~~~-------------~~~~~~~l~i~~~-~~~d~G   64 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES---GRFSVS-------------RSGSNSTLTISNV-TPEDSG   64 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC---CcEEEE-------------EcCCeeEEEEEee-ccccCe
Confidence            346678999999999998877789999998 6665411   111111             0001357999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .|.|.+.+..+... ..+.|.|
T Consensus        65 ~Y~C~v~~~~~~~~-~~~~l~V   85 (86)
T smart00410       65 TYTCAATNSSGSAS-STTTLTV   85 (86)
T ss_pred             EEEEEEEcCCCeEE-EEEEEEE
Confidence            99999997776655 3366655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.09  E-value=8e-10  Score=68.55  Aligned_cols=87  Identities=18%  Similarity=0.294  Sum_probs=58.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+. ..+.+|++|+|.|... .+...+.|+|+|.......  .  .               .....+.+.|.++
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~--~---------------~~~~~~~f~i~~v   60 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--P--P---------------EPQNKAKFFIPSM   60 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc--c--C---------------CCceeEEEEccCC
Confidence            466766664 5688999999999875 4567899999876433210  0  0               0012457899999


Q ss_pred             ccCCCceEEEEEEEeCCc--ceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQG--RSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v  110 (258)
                       +.+|+|.|+|.+.+...  ...+..+.|.|
T Consensus        61 -~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          61 -KREHAGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             -ChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence             99999999999987631  12234455544

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>KOG3515|consensus

Probab=99.09  E-value=1.7e-09  Score=88.99  Aligned_cols=226  Identities=22%  Similarity=0.343  Sum_probs=133.9

Q ss_pred             eeeeecCCCceEEEEEEe--ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532         10 IQQTLQPGPPVSLKCIAT--GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .......+..+.+.|...  +.|.+++.|..+......... .........       .........-+.+... +.++.
T Consensus       105 ~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~-~~~~~~~~a-------~gss~t~~s~l~~~v~-Rka~~  175 (741)
T KOG3515|consen  105 GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVN-QRGRVGAGA-------LGSSYTEPSLLKQTVS-RKADN  175 (741)
T ss_pred             cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccC-Ccccccccc-------cCceeccccceeeEEE-EecCC
Confidence            344567888999999654  357779999987654332210 000000000       0001122345677777 89999


Q ss_pred             eEEEEEEEeCC--cceeeceEEEEEecCC--e-ecc-CCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcceE
Q psy14532         88 GVYWCTATNKQ--GRSSSQNVHISVTGAP--F-VRP-MGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        88 G~Y~C~~~~~~--~~~~~~~~~l~v~~~~--~-~~~-~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                      |.|+|.+.+..  +....+...+.+..+.  . +.. .....+.+|+.+.|.|.+. +.|.+.+.|+++...........
T Consensus       176 g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~  255 (741)
T KOG3515|consen  176 GNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLS  255 (741)
T ss_pred             ceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhccc
Confidence            99999999853  2222133344443332  1 111 2235678899999999774 47889999999877655431111


Q ss_pred             EecCC-----eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc-cccCCCCCccCCCCeeeEEEEeccCCCC
Q psy14532        161 VFPNG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK-IAPFEFQPDLHSGDRAGVQCLVTKGDPP  234 (258)
Q Consensus       161 ~~~~~-----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~  234 (258)
                      ...++     ++.+..- +.++.-...|++.|.    ......+.+..+|. ..+.+....+..|+...+.|....++|.
T Consensus       256 ~~~sg~~v~~~~~~~~~-r~~~~~~~kc~a~n~----~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~  330 (741)
T KOG3515|consen  256 QEPSGDTVSSTLVLRVG-RQDLQAQLKCKASNL----LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPP  330 (741)
T ss_pred             CCCCCCccccccccccc-ccchhhhhhccccCc----cccceeeecccccccccccCcccccccccccccceeccCCCCc
Confidence            11111     2333322 325556788999981    22334445555443 3333444458889999999998888999


Q ss_pred             ceeEEEECCEecccc
Q psy14532        235 LTISWLKNGLPILSA  249 (258)
Q Consensus       235 ~~~~W~~~g~~l~~~  249 (258)
                      ..+.|+++.......
T Consensus       331 ~~i~w~~~~~~~~~~  345 (741)
T KOG3515|consen  331 AHIAWYKDTKMPKGS  345 (741)
T ss_pred             cceeeeccCcccccc
Confidence            999999966655443

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.09  E-value=7.4e-10  Score=69.16  Aligned_cols=70  Identities=21%  Similarity=0.353  Sum_probs=51.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--------CcccCCCcceEEe----cCCeEEEEecccCCCCcEEEEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--------VQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--------~~~~~~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      ...+.+.+|+++.|.|.+.+.|.+.+.|++.        +.......++...    ...+|.|.++.. +|+|.|.|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeE
Confidence            3457788999999999999989999999852        2211122333321    234799999997 99999999999


Q ss_pred             eCC
Q psy14532        187 NKQ  189 (258)
Q Consensus       187 ~~~  189 (258)
                      ...
T Consensus        83 t~~   85 (95)
T cd07701          83 TMP   85 (95)
T ss_pred             eec
Confidence            753

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.09  E-value=3e-10  Score=68.89  Aligned_cols=72  Identities=32%  Similarity=0.584  Sum_probs=55.1

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ..+..|+.+.|.|.+.+.|...+.|++++..+...       ...+.+.++.. +|.|.|+|.+.+..+...+..+.|.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-------~~~~~~~~~~~-~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-------QNGLFIPNVSP-EDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-------SSEEEESSEEG-GGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-------eeeeeeeeecc-ccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            56889999999999998888899999987665422       12266677776 99999999999966545556666554

...

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.09  E-value=7e-10  Score=72.20  Aligned_cols=105  Identities=17%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      +...+..+.+.+|++|.|.|... ......+.|++....-....................+..+..+..+     .+|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            44457888999999999999988 4455689999842100000000000001112223333444444433     35999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .++ +.+|+|.|.|.+...........+.|.|
T Consensus        84 ~~l-~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   84 KNL-QPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SSE-SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCC-CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999 9999999999999874444435555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.09  E-value=3.5e-10  Score=67.81  Aligned_cols=61  Identities=26%  Similarity=0.495  Sum_probs=46.3

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCc----ceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNR----RQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~----~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.|.|.+.+ .|.+.+.|++++..+....    +....   ..+.|.|.++.. +|+|.|+|.+.|..+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~   69 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASL-ADNGEYKCMVSSKLGN   69 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCc-ccCEEEEEEEEeCCCc
Confidence            479999864 6778999999988775332    11221   235699999997 9999999999999874

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.07  E-value=1.9e-09  Score=64.10  Aligned_cols=62  Identities=18%  Similarity=0.262  Sum_probs=45.9

Q ss_pred             cEEEEeeeC-cccCceEEEEeCCcccCCCcc-----eEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        129 PLYLGCPVA-GYPIESITWQKGVQQLPLNRR-----QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       129 ~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      .+.|.|... +.|++.|.||+++..+.....     ......+.|.+..... +|++.|+|+|.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhC
Confidence            368999985 589999999999998854321     1112234577777765 9999999999998864

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.07  E-value=5.3e-10  Score=64.62  Aligned_cols=58  Identities=36%  Similarity=0.638  Sum_probs=45.4

Q ss_pred             CCcEEEEeee-CcccCceEEEEeCCcccCCCcceEEecCC-e----EEEEecccCCCCcEEEEEE
Q psy14532        127 GEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNG-T----LLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       127 g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~----l~i~~~~~~~~~g~y~C~~  185 (258)
                      |+++.|.|.+ .+.+...+.|++++............... .    |.|.++.. +|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence            7899999999 66678899999998877655443332222 2    99999998 9999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.06  E-value=4.2e-10  Score=65.03  Aligned_cols=63  Identities=29%  Similarity=0.602  Sum_probs=42.5

Q ss_pred             CCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         17 GPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        17 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      |++++|.|.+ .+.+...+.|++++...............            ..  ....|.|.++ +.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------------~~--~~~~L~i~~v-~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNS------------VS--STSRLTISNV-TPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETT------------TE--EEEEEEESSC-TGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeeccc------------ce--eeeEEEEccC-CHHHCEEEEEEC
Confidence            7899999999 55677799999987655433110000000            00  0003999999 999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.06  E-value=1.3e-09  Score=69.93  Aligned_cols=90  Identities=22%  Similarity=0.299  Sum_probs=55.9

Q ss_pred             CCCceEEEEEEeecC----------CCeEEEeeC--CEeCcCCccccceecccceeeccccccceee------eeCCcEE
Q psy14532         16 PGPPVSLKCIATGNP----------TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGTLL   77 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~----------~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~   77 (258)
                      .|++|+|.|.....+          ...+.|+|.  ++......    . ..........+.+|..+      ..+.+|.
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~----~-~~~~~~~~~~f~gR~~~~~~~~~~~~asL~   75 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLV----A-QDGVVKVGQEYQGRVSLPNYPENRGDASLE   75 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEE----E-ECCEEEecccccCeEEeccCCCCCCcEEEE
Confidence            389999999986532          357999985  22111000    0 00000112233334333      2456799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      |.++ +.+|+|.|+|.+........ ..+.|.|..
T Consensus        76 I~~l-~~sD~G~Y~C~v~~~~~~~~-~~v~l~V~g  108 (110)
T cd05878          76 ISRL-RSSDSGVYRCEVMHGIEDEQ-DTVPLEVTG  108 (110)
T ss_pred             ECCC-ChhhCEEEEEEEEeCCCcce-EEEEEEEEE
Confidence            9999 99999999999998665555 777777753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.06  E-value=1.4e-09  Score=67.51  Aligned_cols=86  Identities=14%  Similarity=0.245  Sum_probs=58.9

Q ss_pred             CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC-C-C
Q psy14532        114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ-G-R  191 (258)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-~-~  191 (258)
                      |.+...+...+..|++|+|.|... .+...+.|+++|..............+.+.|.+++. +|+|.|+|.+.+.. . +
T Consensus         3 P~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~~~~~~S   80 (91)
T cd05751           3 PSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKR-EHAGRYRCYYRSGVALWS   80 (91)
T ss_pred             CEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCCh-hHCEEEEEEEECCCCccC
Confidence            444444556788999999999876 456689999988764432111112345689999998 99999999998863 1 2


Q ss_pred             CccceEEEEe
Q psy14532        192 SSSQNVHISV  201 (258)
Q Consensus       192 ~~~~~~~l~v  201 (258)
                      ..+..+.|.|
T Consensus        81 ~~Sd~lel~V   90 (91)
T cd05751          81 EPSDPLELVV   90 (91)
T ss_pred             CCCCcEEEEe
Confidence            3455555554

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.05  E-value=2.9e-09  Score=64.25  Aligned_cols=80  Identities=24%  Similarity=0.409  Sum_probs=56.3

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      ....+.+|+++.|.|...+. ...+.|++++..+...   .++..                 ...-|.|.++ +..|+|.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~---~r~~~-----------------~~~GLlI~~~-~~~dsG~   61 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ---FSYRV-----------------GTDGLLILVT-SPEHSGT   61 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC---cceEE-----------------eCCCCEEEEC-CHhhCEE
Confidence            45778999999999998764 6699999999877532   22211                 1334789999 9999999


Q ss_pred             EEEEEEeCCcceeeceEEEEEe
Q psy14532         90 YWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        90 Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |.|.+.-..-......+.|.|.
T Consensus        62 Y~C~s~E~gf~~~~~~y~l~v~   83 (85)
T cd05872          62 YRCYSEEEGFQQLVASYSLNVV   83 (85)
T ss_pred             EEEEEecCCCeEEEEEEEEEEe
Confidence            9999874432222255555543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.04  E-value=3.7e-09  Score=67.76  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             CCCceEEEEEEeecC------CCeEEEeeCCEeCcCCccccceecccceeeccccccceeee----eCCcEEEeecccCC
Q psy14532         16 PGPPVSLKCIATGNP------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLIENVQKDH   85 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~   85 (258)
                      .|++|+|.|.....+      ...|.|+|....-.... ...+..+........+..|..+.    .+.+|.|.++ +.+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~   78 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEE-DVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLE   78 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeE-EEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChH
Confidence            489999999876542      34799998531100000 00000001111111222333322    2467999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |+|.|+|.+.+..+... ..+.|.|.
T Consensus        79 DsG~Y~C~v~~~~~~~~-~~~~l~v~  103 (106)
T cd05877          79 DYGRYRCEVIDGLEDES-VVVALRLR  103 (106)
T ss_pred             HCEEEEEEEEecccceE-EEEEEEEE
Confidence            99999999988766555 77777765

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.04  E-value=1.3e-09  Score=70.37  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEee
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIEN   80 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~   80 (258)
                      ...+..+.+.+|++|+|.|.+.+.+...+.|+|....-...   ........ .. .....|..+.     ...+|.|.+
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~---~l~~~~~~-~~-~~~~~r~~~~~~~~~~~~~L~I~~   76 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQ---FLIYISSN-GE-EKEKGRFSATLDKSRKSSSLHISA   76 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeE---EEEEEecC-CC-cccCCcEEEEEcccCCEEEEEECC
Confidence            35567788999999999999987677799999853110000   00000000 00 0111122111     345799999


Q ss_pred             cccCCCceEEEEEEEeCC
Q psy14532         81 VQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~   98 (258)
                      + +.+|+|.|.|.+.+..
T Consensus        77 ~-~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          77 A-QLSDSAVYFCALSESG   93 (109)
T ss_pred             C-CHHHCEEEEEEEecCC
Confidence            9 9999999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.03  E-value=3.2e-09  Score=65.61  Aligned_cols=78  Identities=24%  Similarity=0.372  Sum_probs=53.7

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCc--cc----CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL----PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      +...+|+.+.|.|.. +.|.+.+.|++...  ..    ....+... ..+.|.|.++.. +|+|.|+|.+.+........
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~-~DsG~Y~C~a~~~~~~~~~~   82 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQR-SDAGVYTCTAVEHSFSQTLA   82 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCCh-hHCEEEEEEEEccCCeEEEE
Confidence            456789999999996 47888999998432  21    11223332 446799999998 99999999998543223334


Q ss_pred             eEEEEee
Q psy14532        196 NVHISVT  202 (258)
Q Consensus       196 ~~~l~v~  202 (258)
                      .+.|.|.
T Consensus        83 ~~~l~v~   89 (91)
T cd05871          83 KYTLHVI   89 (91)
T ss_pred             EEEEEEe
Confidence            5666654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.03  E-value=2.6e-09  Score=67.69  Aligned_cols=88  Identities=18%  Similarity=0.281  Sum_probs=52.3

Q ss_pred             CCceEEEEEEeec---CCCeEEEeeCCE--eCcCCccccceecccceeeccccccceee------eeCCcEEEeecccCC
Q psy14532         17 GPPVSLKCIATGN---PTPHISWKLDGY--PLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGTLLIENVQKDH   85 (258)
Q Consensus        17 g~~v~l~C~~~~~---~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~   85 (258)
                      |++|+|.|.....   ....+.|+|...  .+... .......   ......+..|..+      ..+.+|.|.++ +.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~-~~~~~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~   75 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLY-RDGQDQY---GEQMPEYRGRTELLKDAIAEGSVALRIHNV-RAS   75 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEE-cCCcccc---cccCccccceEEeecccccCCcEEEEEEcC-Chh
Confidence            7899999998632   223789998542  11111 0000000   0011112223222      13467999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEE
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      |+|.|+|.+.+..+... ..+.|+|
T Consensus        76 D~G~Y~C~v~~~~~~~~-~~i~l~v   99 (100)
T cd05713          76 DEGLYTCFFQSDGFYEE-ATVELKV   99 (100)
T ss_pred             hCEEEEEEEecCCcEEE-EEEEEEE
Confidence            99999999998776644 7777766

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=99.03  E-value=4.4e-09  Score=68.50  Aligned_cols=92  Identities=16%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             eceeeeecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceecccce-eeccccccceeee-----eCCcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRIGEAR-VQQLPLNRRQKVF-----PNGTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~l~   77 (258)
                      .|..+.+.+|++|+|.|......    ...+.|++....-........+..+... .....+..|..+.     .+.+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            46677889999999999886432    2469998742100000000000000000 0112233332222     246799


Q ss_pred             EeecccCCCceEEEEEEEeCCcc
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~  100 (258)
                      |.++ +.+|+|.|.|.+.+....
T Consensus        84 I~~v-~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNL-QFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeC-CcccCEEEEEEEEeCCCC
Confidence            9999 999999999999987654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.02  E-value=1.4e-09  Score=69.75  Aligned_cols=94  Identities=22%  Similarity=0.263  Sum_probs=55.5

Q ss_pred             CCCceEEEEEEeecC------CCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeecccCC
Q psy14532         16 PGPPVSLKCIATGNP------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQKDH   85 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~   85 (258)
                      .|++|+|.|.....+      ...+.|+|....-..... .....+........+..+..    ...+.+|.|.++ +.+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~-v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~s   78 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVD-VLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLE   78 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEE-EEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHH
Confidence            489999999987542      458999986310000000 00000100011112222222    124678999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      |+|.|+|.+.+..+... ..+.|.|..
T Consensus        79 D~G~Y~C~v~~~~~~~~-~~v~L~V~~  104 (106)
T cd05714          79 DSGRYRCEVIDGIEDEQ-DTVELEVRG  104 (106)
T ss_pred             HCEEEEEEEEcCCCceE-EEEEEEEEE
Confidence            99999999998755444 777777753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.02  E-value=5.4e-09  Score=64.59  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             eeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ..+.|.+|+.+.|.|.+.+.|.+. +.|.+++..+...... ....          .......-.+.|.+.++ +..|.|
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~----------~~~~~~rY~S~L~L~Rl-k~~E~G   78 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKS----------RNESNNRYVSELHLTRL-KGTEGG   78 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEE----------eccCceEEEEEEEEeec-ChhhCc
Confidence            346689999999999999999997 9999987655433211 1100          00011112357999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEe
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .|+|.+.|...... .++.|.|.
T Consensus        79 ~YTf~a~N~~~~~s-~tF~l~v~  100 (101)
T cd05860          79 TYTFLVSNSDASAS-VTFNVYVN  100 (101)
T ss_pred             EEEEEEECCCCeEE-EEEEEEEe
Confidence            99999999988776 77777764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.00  E-value=2.2e-09  Score=66.30  Aligned_cols=68  Identities=19%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             cceecCCcEEEEeee-Cc----ccCceEEEEeCCcccCCCcce-EE-ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        122 VSAIAGEPLYLGCPV-AG----YPIESITWQKGVQQLPLNRRQ-KV-FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~-~~----~~~~~i~W~~~~~~~~~~~~~-~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..+..|....|.|.- .+    .+.+.++|++++..+...... .. .....|.|.++.. +|+|.|+|++.+..+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~~~~~~~   79 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSL-NDSGYYTCKLQFTHE   79 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcCh-hhCEEEEEEEEEeeC
Confidence            345678899999972 33    356799999999887644322 22 2345799999998 999999999999764

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.00  E-value=2.8e-09  Score=65.90  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      .++.+.+|++++|.|.+.+.....+.|++.+..+..... ... ..+.+.....+     .....+|.|.++ +.+|+|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~-~~~-~~d~Rf~~~~~-----~~~~~tL~I~~v-q~~D~G~   76 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRD-VRP-LKDSRFQLVNF-----SSNELRVSLSNV-SLSDEGR   76 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecC-ccc-cCCcCEEEEeC-----CCCEEEEEECcC-CcccCEE
Confidence            567899999999999998876678899976532211100 000 01111100000     012336999999 9999999


Q ss_pred             EEEEEEeCC
Q psy14532         90 YWCTATNKQ   98 (258)
Q Consensus        90 Y~C~~~~~~   98 (258)
                      |.|.+....
T Consensus        77 Y~Cqv~t~p   85 (95)
T cd05881          77 YFCQLYTDP   85 (95)
T ss_pred             EEEEEEccc
Confidence            999998644

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.99  E-value=6.6e-09  Score=65.32  Aligned_cols=92  Identities=21%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             CCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeecccCCCceEEE
Q psy14532         17 GPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        17 g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      |++|+|.|...... ...|.|+|........  ...+...........+..+..    ...+.+|.|.++ +.+|+|.|+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~--i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv-~~~D~G~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPEN--IATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNV-TLEDEGCYK   77 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceE--EEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCC-ceeeeEEEE
Confidence            78999999865432 2379999842110000  000000001111112222211    124578999999 999999999


Q ss_pred             EEEEeCCcceeeceEEEEEe
Q psy14532         92 CTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |.+...+.......+.|+|.
T Consensus        78 C~~~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          78 CIFNTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             EEEEeCCCCCeeeEEEEEEC
Confidence            99987655444477788763

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.99  E-value=3.9e-09  Score=71.87  Aligned_cols=98  Identities=24%  Similarity=0.356  Sum_probs=65.1

Q ss_pred             ceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeeccc
Q psy14532          9 FIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQK   83 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~   83 (258)
                      ...+.|.+|++|+|.|... +...+.+.|+|..+.+......+ ..+      ..++.+|..    -..+.+|.|.++ +
T Consensus        22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g-~~i------~~~Fk~Rve~mS~s~~~StItIknV-t   93 (189)
T PHA02987         22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCG-PVI------VDKFKNKIEYLSKSFNESTILIKNV-S   93 (189)
T ss_pred             eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCC-cEE------ChhhcCeEEEeccCCCcceEEEEeC-C
Confidence            3467789999999999974 55577899999644333222111 111      112222221    124567999999 9


Q ss_pred             CCCceEEEEEEEeCCcc-eeeceEEEEEecCC
Q psy14532         84 DHDRGVYWCTATNKQGR-SSSQNVHISVTGAP  114 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~  114 (258)
                      .+|+|.|+|.+...+.. ..+....|.|....
T Consensus        94 ~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987         94 LKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             hhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence            99999999998875433 55588899998664

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.98  E-value=2.2e-09  Score=69.29  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=52.5

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceee----ccccccceeeeeCCcEEEe
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQ----QLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~   79 (258)
                      .+.|..+.+.+|++|+|.|...+ +...+.|||..  +....-   ...........    ..++..........+|.|.
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   77 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLL---FYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIK   77 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEE---EEEcCCCceEecCccCCceEEECcCCCccEEEEC
Confidence            45677888999999999999887 66789999853  111100   00000000000    0111100000124579999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        78 ~~-~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          78 SA-EPEDSAVYLCASSLG   94 (110)
T ss_pred             CC-ChhhCEEEEEEeeCC
Confidence            99 999999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00410 IG_like Immunoglobulin like

Probab=98.98  E-value=1e-08  Score=62.75  Aligned_cols=79  Identities=37%  Similarity=0.574  Sum_probs=58.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeC-CcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKG-VQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+......   ..|.|.++.. .|+|.|.|.+.+..+... ..
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~-~~   80 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSAS-ST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEE-EE
Confidence            35577899999999998877889999998 666653444444333   5799999997 999999999997765333 22


Q ss_pred             EEEEe
Q psy14532        197 VHISV  201 (258)
Q Consensus       197 ~~l~v  201 (258)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            44443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.98  E-value=1e-08  Score=62.75  Aligned_cols=79  Identities=37%  Similarity=0.574  Sum_probs=58.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeC-CcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKG-VQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+......   ..|.|.++.. .|+|.|.|.+.+..+... ..
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~-~~   80 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSAS-ST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEE-EE
Confidence            35577899999999998877889999998 666653444444333   5799999997 999999999997765333 22


Q ss_pred             EEEEe
Q psy14532        197 VHISV  201 (258)
Q Consensus       197 ~~l~v  201 (258)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            44443

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.97  E-value=5e-09  Score=66.14  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             CceEEEEEEeecC---CCeEEEeeCCEeCcCCccccceecccceeeccccccceeee----eCCcEEEeecccCCCceEE
Q psy14532         18 PPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        18 ~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~Y   90 (258)
                      ++|+|.|......   ...|.|+|....-..  ....+...........+..|..+.    .+.+|.|.++ +.+|+|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~--~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y   77 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQ--NIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNY   77 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCE--EEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEE
Confidence            5799999987643   347999985421000  000000000000001122222222    3568999999 99999999


Q ss_pred             EEEEEeC-CcceeeceEEEEE
Q psy14532         91 WCTATNK-QGRSSSQNVHISV  110 (258)
Q Consensus        91 ~C~~~~~-~~~~~~~~~~l~v  110 (258)
                      .|.+... .|... ..+.|.|
T Consensus        78 ~C~v~~~~~g~~~-~~~~l~V   97 (98)
T cd05718          78 ICEFATFPQGNRQ-KVTTLTV   97 (98)
T ss_pred             EEEEEeCCCCcEE-EEEEEEe
Confidence            9999764 44444 7777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.96  E-value=1.1e-08  Score=64.02  Aligned_cols=39  Identities=21%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        72 ~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .+++|.|.++ +.+|+|.|+|.+.+......+..+.|.|+
T Consensus        61 ~daSi~i~nl-~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRL-ELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCC-ccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            4689999999 99999999999999544334478888774

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.96  E-value=4.6e-09  Score=67.25  Aligned_cols=84  Identities=19%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             eecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEeecccCCC
Q psy14532         13 TLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKDHD   86 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d   86 (258)
                      .+.+|++|+|.|.+... +...+.|+|....-... ........... ....+..+....     .+.+|.|.++ +.+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~-~i~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~sL~I~~v-~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPE-LLIYISSNGSQ-YAGGVKGRFSGTRDSSKSSFTLTISSL-QPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCE-EEEEEeCCCCc-cCccCCCcEEEEEeccCCEEEEEECCC-CHHH
Confidence            57899999999999875 66789999853210000 00000000000 011112222221     2347999999 9999


Q ss_pred             ceEEEEEEEeCCc
Q psy14532         87 RGVYWCTATNKQG   99 (258)
Q Consensus        87 ~G~Y~C~~~~~~~   99 (258)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.96  E-value=1.2e-08  Score=60.67  Aligned_cols=68  Identities=21%  Similarity=0.348  Sum_probs=48.5

Q ss_pred             ceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532         19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .+.|+|...+ .|.+.++|||+++++..... ..             .........++|.+... +.+|.+.|+|.+.|.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~-------------~~~~~~t~~s~L~~~~~-~~Ddg~~~~C~A~n~   65 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-QQ-------------ENGKTVSVSNTIRFPVD-RKDDGAILSCEASHP   65 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcc-cc-------------cCCceEEEEEEEEEEee-eccCCcEEEEEEECh
Confidence            3789999765 68889999999999864310 00             01111223456888888 899999999999998


Q ss_pred             Ccce
Q psy14532         98 QGRS  101 (258)
Q Consensus        98 ~~~~  101 (258)
                      .+..
T Consensus        66 a~~~   69 (80)
T cd05885          66 ALVS   69 (80)
T ss_pred             hhCC
Confidence            7643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.94  E-value=1.1e-08  Score=61.68  Aligned_cols=65  Identities=23%  Similarity=0.371  Sum_probs=52.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      ...+..|+.+.|.|...+. .+.+.|++++..+....+......+ |.|.+++. .|+|.|.|.+.-.
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G-LlI~~~~~-~dsG~Y~C~s~E~   69 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG-LLILVTSP-EHSGTYRCYSEEE   69 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC-CEEEECCH-hhCEEEEEEEecC
Confidence            4567899999999998764 6699999999988766555554444 66888887 9999999998744

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.94  E-value=2.3e-09  Score=63.99  Aligned_cols=74  Identities=36%  Similarity=0.555  Sum_probs=51.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.|...+.......+. +.|.|.+.+.+ .+.++|+........                   ........+++|.|.+
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~-------------------~~~~~~~~~~~L~i~~   60 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNS-------------------NSRGSSSSNSTLTISN   60 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEE-------------------EEEEEEEEEEEEEESS
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceee-------------------eeeeccceeeEEEEcc
Confidence            58888877777666666 99999998876 779999911000000                   0011223456799999


Q ss_pred             cccCCCceEEEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATN   96 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~   96 (258)
                      + ..+|.|.|+|.|.|
T Consensus        61 v-~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   61 V-TRSDNGTYTCIASN   75 (75)
T ss_dssp             C-CGGGTEEEEEEEEE
T ss_pred             C-CHHhCcEEEEEEEC
Confidence            9 99999999999975

...

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.94  E-value=1.5e-08  Score=64.00  Aligned_cols=86  Identities=16%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CceEEEEEEeecC---CCeEEEeeCCE---e--CcCCccccceecccceeeccccccceeee-----eCCcEEEeecccC
Q psy14532         18 PPVSLKCIATGNP---TPHISWKLDGY---P--LAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKD   84 (258)
Q Consensus        18 ~~v~l~C~~~~~~---~~~v~W~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~   84 (258)
                      .+|+|.|......   ...|.|+|...   +  +...    ....+...  ...+.+|....     .+++|.|.++ +.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~----~~~~~~~~--~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~   73 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALL----HFKYGQTE--FHAYEGRVRFETPNPIADGALILRNA-VQ   73 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEE----eccCCccc--CCCccCcEEEeCCCCCCceEEEEecC-cc
Confidence            3689999986543   34899998421   1  1100    00001000  11222232222     3668999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|+|.|.|.+.+.........+.|.|
T Consensus        74 sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          74 ADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             ccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            99999999999854443347777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA03376 BARF1; Provisional

Probab=98.92  E-value=3.9e-08  Score=66.83  Aligned_cols=119  Identities=20%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             CcceecCCcEEEEeeeCc---ccCceEEEEeCCc----cc-------------CCCcceEE---ecCCeEEEEecccCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAG---YPIESITWQKGVQ----QL-------------PLNRRQKV---FPNGTLLIENVQKDHD  177 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~---~~~~~i~W~~~~~----~~-------------~~~~~~~~---~~~~~l~i~~~~~~~~  177 (258)
                      .+....|+.+.|.|....   .....|.|+|.+.    .+             ....+..+   ..+-+|.|.+++. +|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l-SD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee-cC
Confidence            456778999999998752   2455899999432    10             01111222   1223688899997 99


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEEC
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN  242 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  242 (258)
                      .|.|+|.+........ .--.|.+..+-.+.+.........-+...+.|.+ +++|.|.++|.-+
T Consensus        99 dGtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~s-ggfP~P~~~Wle~  161 (221)
T PHA03376         99 DGNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMP  161 (221)
T ss_pred             CceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEec-CCcCCchheeccc
Confidence            9999999987653211 1111221111111111111112225678999995 9999999999864

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.92  E-value=1.2e-08  Score=60.84  Aligned_cols=73  Identities=16%  Similarity=0.322  Sum_probs=49.9

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCcceE-Ee-----cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQK-VF-----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~-~~-----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +.|.|.+.| +|.+.|.|++++..+....... ..     ..+.|.+.... ++|+..|+|+|.|..-........|+|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~-eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTK-EDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECch-hhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999866 7899999999998876542211 11     12246665444 4777799999999875445666667765


Q ss_pred             c
Q psy14532        203 V  203 (258)
Q Consensus       203 ~  203 (258)
                      +
T Consensus        81 y   81 (82)
T cd05883          81 Y   81 (82)
T ss_pred             E
Confidence            4

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.91  E-value=2e-08  Score=64.35  Aligned_cols=88  Identities=17%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +.+.|..+.+.+|++|+|.|.+.+.. ...+.|||..  +....-   .............++... .......|.|.++
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l---~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~~   78 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLL---IYGASTLASGTPSRFSGS-GSGTDFTLTISRV   78 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEE---EECccccCCCCCCCEEEe-ccCCEEEEEECCC
Confidence            45677888999999999999987654 5679999842  111000   000000000000011110 0112346999999


Q ss_pred             ccCCCceEEEEEEEeC
Q psy14532         82 QKDHDRGVYWCTATNK   97 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~   97 (258)
                       +.+|+|.|.|.+.+.
T Consensus        79 -~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          79 -EPEDAAVYYCQQYGT   93 (106)
T ss_pred             -ChHHCEEEEEEEeCC
Confidence             999999999998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.91  E-value=1.4e-08  Score=63.68  Aligned_cols=70  Identities=24%  Similarity=0.374  Sum_probs=50.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCccc--------CCCcceEEe----cCCeEEEEecccCCCCcEEEEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL--------PLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      .....+.+|+++.|.|.+.+.+.+.+.|++.+..+        ....++.+.    ....|.|.+++. +|+|.|+|.+.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~   82 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLY   82 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEe
Confidence            34567889999999999988778899998522211        011233331    234689999998 99999999998


Q ss_pred             eCC
Q psy14532        187 NKQ  189 (258)
Q Consensus       187 ~~~  189 (258)
                      ...
T Consensus        83 ~~~   85 (95)
T cd05717          83 TMP   85 (95)
T ss_pred             cCC
Confidence            764

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.90  E-value=1.3e-08  Score=62.32  Aligned_cols=74  Identities=28%  Similarity=0.327  Sum_probs=50.7

Q ss_pred             CCcEEEEeeeCccc--CceEEEEeCCcccCCC---c--ceE----EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        127 GEPLYLGCPVAGYP--IESITWQKGVQQLPLN---R--RQK----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       127 g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~---~--~~~----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      |+.+.|.|.+.+.+  ...+.|...+......   .  +..    ....+.|.|.++.. .|+|.|+|.+.|..+ ....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~-~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQM-IAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecce-Eecc
Confidence            68899999997644  4588998866533111   1  000    11245799999997 999999999999876 3445


Q ss_pred             eEEEEee
Q psy14532        196 NVHISVT  202 (258)
Q Consensus       196 ~~~l~v~  202 (258)
                      ...|.|+
T Consensus        79 ~t~~~V~   85 (86)
T cd05862          79 STIVIVH   85 (86)
T ss_pred             cEEEEEe
Confidence            5556554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.90  E-value=1.7e-08  Score=62.56  Aligned_cols=90  Identities=23%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             CceEEEEEEeec-CCCeEEEeeCC----EeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532         18 PPVSLKCIATGN-PTPHISWKLDG----YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        18 ~~v~l~C~~~~~-~~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      ++|+|.|..... ...+|.|.|-.    ..+..........+......+..+.  .....+++|.|.++ +.+|+|.|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~--~~~~~d~sl~i~nv-~~~D~G~Y~C   77 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK--NYSLLDATIMLENV-GFSDIGVYIC   77 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc--CCCCCccEEEEeCC-CccccEEEEE
Confidence            468999998642 34489998842    1111111001111111111111111  11234789999999 9999999999


Q ss_pred             EEEeCCcceeeceEEEEE
Q psy14532         93 TATNKQGRSSSQNVHISV  110 (258)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v  110 (258)
                      .+...+.........|.|
T Consensus        78 ~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          78 KAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEeCCCCCeeEEEEEEE
Confidence            998766544447777776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.90  E-value=8.8e-09  Score=65.68  Aligned_cols=90  Identities=20%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeecC-------CCeEEEeeCC--EeCcCCcccccee-cccceeeccccccceeee------eCCcEEEee
Q psy14532         17 GPPVSLKCIATGNP-------TPHISWKLDG--YPLAGDRHENKNR-IGEARVQQLPLNRRQKVF------PNGTLLIEN   80 (258)
Q Consensus        17 g~~v~l~C~~~~~~-------~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~l~i~~   80 (258)
                      |++|+|.|...-.|       .+.+.|.|.-  +.....   ..+. .+........+..|..+.      .+.+|.|.+
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~---~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~n   78 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQR---PVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSR   78 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEE---EEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECC
Confidence            78999999965322       3689999841  111100   0000 111111234455555543      356899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      + +.+|+|.|+|.+........ ..+.|.|.
T Consensus        79 v-~~~D~G~Y~C~v~~g~~~~~-~~v~L~V~  107 (110)
T cd05902          79 L-RYSDSGTYRCEVVLGINDEQ-DTVPLEVT  107 (110)
T ss_pred             C-CHHHCEEEEEEEEECCcccE-EEEEEEEE
Confidence            9 99999999999998654444 77777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.90  E-value=1.2e-08  Score=63.52  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+ ...+.+|++|+|.|.... ....+.|+|+|............                .....+.+.|..+
T Consensus         1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~----------------~~~~~a~f~I~~~   62 (94)
T cd05711           1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKH----------------HGGFQASFPLGPV   62 (94)
T ss_pred             CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceeccccc----------------CCeEEEEEEecCC
Confidence            46676655 466889999999997764 45589999987643221000000                0011346889999


Q ss_pred             ccCCCceEEEEEEEe
Q psy14532         82 QKDHDRGVYWCTATN   96 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~   96 (258)
                       +.+|+|.|+|....
T Consensus        63 -~~~~~G~Y~C~~~~   76 (94)
T cd05711          63 -TPAHAGTYRCYGSY   76 (94)
T ss_pred             -CcccCEEEEEEEEC
Confidence             99999999999764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.88  E-value=2.2e-08  Score=60.89  Aligned_cols=70  Identities=20%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCcce-EEecC-------CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEE
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQ-KVFPN-------GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHI  199 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~-~~~~~-------~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l  199 (258)
                      +.|.|.+.| .|.+.++|++++..+...... ....+       +.|.+..... ++.|.|+|.|.|.... ....++.|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH-DTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee-cCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 688899999999876533211 11112       2456665554 7888999999997632 33445544


Q ss_pred             E
Q psy14532        200 S  200 (258)
Q Consensus       200 ~  200 (258)
                      +
T Consensus        81 ~   81 (82)
T cd05759          81 D   81 (82)
T ss_pred             c
Confidence            4

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.88  E-value=2.3e-08  Score=65.20  Aligned_cols=87  Identities=18%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             eeceeeeecCCCceEEEEEEee--cCCCeEEEeeCC--EeCcCCccccceecccc-eeeccccccceeee-----eCCcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YPLAGDRHENKNRIGEA-RVQQLPLNRRQKVF-----PNGTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~l   76 (258)
                      +.+..+.+.+|++|+|.|.+.+  .+...+.|||..  .....-   ........ ......+..+....     ...+|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   79 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERL---LYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTL   79 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEE---EEEecCCCcEEeCcccCCCEEEEEECCCCEEEE
Confidence            4567788999999999999876  566789999852  111000   00000000 00000111122211     23469


Q ss_pred             EEeecccCCCceEEEEEEEeC
Q psy14532         77 LIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .|.++ +.+|+|.|.|.+...
T Consensus        80 ~I~~~-~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          80 TIQNL-EKEDSATYYCAYWES   99 (116)
T ss_pred             EEEEC-CHHHCEEEEEEEecC
Confidence            99999 999999999998643

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.88  E-value=2.5e-08  Score=63.10  Aligned_cols=78  Identities=26%  Similarity=0.414  Sum_probs=55.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCccc-------------------CCCcceEEecCCeEEEEecccCCCCcEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL-------------------PLNRRQKVFPNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~-------------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+|+.+.|.|.........+.|+|.....                   ....+..+..+++|.|.+++. +|+|.|
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~-~D~G~Y   85 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQ-KDTGFY   85 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCc-ccCEEE
Confidence            345778999999997643344589999953211                   123455667788999999997 999999


Q ss_pred             EEEEEeCCCCCccceEEE
Q psy14532        182 WCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l  199 (258)
                      +|.+.+.........+.|
T Consensus        86 ~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          86 TLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEeCCccEEEEEEEE
Confidence            999998764333344443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.86  E-value=2.6e-08  Score=63.70  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=56.1

Q ss_pred             CCceEEEEEEeecC-----------CCeEEEeeCC-----EeCcCCccccceecccceeeccccccceeee------eCC
Q psy14532         17 GPPVSLKCIATGNP-----------TPHISWKLDG-----YPLAGDRHENKNRIGEARVQQLPLNRRQKVF------PNG   74 (258)
Q Consensus        17 g~~v~l~C~~~~~~-----------~~~v~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   74 (258)
                      |++++|.|.....|           ...|.|++-.     +.....  .-....+........+.+|..+.      .+.
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~--~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~a   79 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKET--TVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDA   79 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCcc--EEEEEECCEEEECCcccCcEEeeccCCcCCce
Confidence            78899999987432           2379999731     110000  00001111111223444454442      467


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +|.|.++ +.+|+|.|+|.+........ ..+.|.|.
T Consensus        80 sL~i~~v-~~sD~G~Y~C~V~~g~~~~~-~~v~L~V~  114 (117)
T cd05901          80 SLTIVKL-RASDAGVYRCEVMHGIEDTQ-DTVSLDVS  114 (117)
T ss_pred             EEEEccc-ccccCEEEEEEEEECCcccE-EEEEEEEE
Confidence            8999999 99999999999998876555 77777775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.85  E-value=2.4e-08  Score=62.22  Aligned_cols=73  Identities=29%  Similarity=0.533  Sum_probs=52.8

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccC------------------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLP------------------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      |++|+|.|.........+.|++......                  ...+..+..+++|.|.+++. +|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~-~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTK-EDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCc-hhcEEEEEEEEcC
Confidence            7899999988765566899998653221                  12334455667899999997 9999999999987


Q ss_pred             CCCCccceEEEE
Q psy14532        189 QGRSSSQNVHIS  200 (258)
Q Consensus       189 ~~~~~~~~~~l~  200 (258)
                      .+......+.|.
T Consensus        80 ~~~~~~~~~~l~   91 (92)
T cd05741          80 NGVTENAKFFLR   91 (92)
T ss_pred             CCcEEEEEEEEE
Confidence            654444444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.85  E-value=2.3e-08  Score=62.05  Aligned_cols=84  Identities=17%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             CceEEEEEEee-cCCCeEEEeeCCE----eCcCCccccceecccceeeccccccceeee----eCCcEEEeecccCCCce
Q psy14532         18 PPVSLKCIATG-NPTPHISWKLDGY----PLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLIENVQKDHDRG   88 (258)
Q Consensus        18 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G   88 (258)
                      +.++|.|.... ....+|.|.|...    .+..........+.      .++.+|....    .+.+|.|.++ +.+|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~------~~y~~Rv~f~~~~~~d~sI~i~nv-t~~D~G   73 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIE------DKYRGRVYFLNSTREDMSLSFNNA-TEEDVG   73 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEEC------ccccCeEEEecCCCCccEEEEcCC-CcccCE
Confidence            46899999764 2455899998421    12111111111111      1222332222    4688999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHI  108 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l  108 (258)
                      .|+|.+...+.....+.+.+
T Consensus        74 ~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          74 LYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             EEEEEEEeCCCCCeEEEEEE
Confidence            99999987654443254443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.84  E-value=3.3e-08  Score=61.15  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=58.6

Q ss_pred             CCcceecCCcEEEEeeeCcccCce-EEEEeCCcccCCCcc--eEEe------cCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRR--QKVF------PNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~~~~~~~--~~~~------~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ....+.+|+.+.|.|.++++|.|. +.|.+++..+.....  ....      ..+.|.|..++. ++.|.|+|.|.|...
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCC
Confidence            346788999999999999999996 999998765432222  1111      124689999987 999999999999876


Q ss_pred             CCccceEEEEe
Q psy14532        191 RSSSQNVHISV  201 (258)
Q Consensus       191 ~~~~~~~~l~v  201 (258)
                       ..+.++.|.|
T Consensus        90 -~~s~tF~l~v   99 (101)
T cd05860          90 -SASVTFNVYV   99 (101)
T ss_pred             -eEEEEEEEEE
Confidence             3445555544

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.83  E-value=1.1e-08  Score=63.32  Aligned_cols=67  Identities=22%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccC--------------CCcceEEe----c--CCeEEEEecccCCCCcEEE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--------------LNRRQKVF----P--NGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~--------------~~~~~~~~----~--~~~l~i~~~~~~~~~g~y~  182 (258)
                      .+..|++++|.|.+.+.+.+.+.|++++....              ...+....    .  +..|.|.++.. +|+|.|.
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEEE
Confidence            46789999999999888888999996552211              01111111    1  12599999998 9999999


Q ss_pred             EEEEeCCC
Q psy14532        183 CTATNKQG  190 (258)
Q Consensus       183 C~~~~~~~  190 (258)
                      |.+.+..+
T Consensus        82 C~v~~~~~   89 (94)
T cd07690          82 CEVEDKKE   89 (94)
T ss_pred             EEECCccc
Confidence            99998754

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.81  E-value=8.1e-08  Score=58.36  Aligned_cols=70  Identities=27%  Similarity=0.411  Sum_probs=44.7

Q ss_pred             ceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532         19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .+.|.|.+.+ .|.+.+.|+|++..+..... ......          ..........|.|... ..+|.|.|+|.+.+.
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~----------~~~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~   68 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLK----------DGKRETTVSTLPITPS-DHDTGRTFTCRARNE   68 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEec----------CCCeEEEEEEEEEeCc-eecCCCEEEEEEcCc
Confidence            3689999987 57789999999988754311 000000          0001111235667766 777889999999987


Q ss_pred             Ccc
Q psy14532         98 QGR  100 (258)
Q Consensus        98 ~~~  100 (258)
                      ...
T Consensus        69 ~l~   71 (82)
T cd05759          69 ALP   71 (82)
T ss_pred             cCC
Confidence            643

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.79  E-value=7.4e-08  Score=59.82  Aligned_cols=68  Identities=21%  Similarity=0.373  Sum_probs=48.8

Q ss_pred             cceecCCcEEEEeeeC------cc-----cCceEEEEeCCcccCCCcc-----eEE-ecCCeEEEEecccCCCCcEEEEE
Q psy14532        122 VSAIAGEPLYLGCPVA------GY-----PIESITWQKGVQQLPLNRR-----QKV-FPNGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~------~~-----~~~~i~W~~~~~~~~~~~~-----~~~-~~~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      ..+.+|+.+.|.|...      ++     ....+.|+|++........     .++ .....|.|.++.. +|+|.|+|.
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~-eDSG~Y~C~   88 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAEL-QDSGLYTCV   88 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCCh-hhCeEEEEE
Confidence            4577899999999861      11     1347999998754443221     122 3556799999998 999999999


Q ss_pred             EEeCCC
Q psy14532        185 ATNKQG  190 (258)
Q Consensus       185 ~~~~~~  190 (258)
                      +.|...
T Consensus        89 ~rN~t~   94 (104)
T cd05896          89 LRNSTY   94 (104)
T ss_pred             ECCCCc
Confidence            998753

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.78  E-value=3.9e-08  Score=64.09  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee-----eCCcE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTL   76 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l   76 (258)
                      +.+.+..+.+.+|++|+|.|..... ....+.|+|..  ..+.       ..+.........+..|..+.     .+.+|
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~-------~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL   74 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMT-------FLIRQKSIYGNATKGRYSVNFQKAQKSISL   74 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceE-------EEEEecCccCCccCCeEEEEEeccCCEEEE
Confidence            4567778889999999999997653 34579999842  1110       00000000111112222221     23469


Q ss_pred             EEeecccCCCceEEEEEEEeC
Q psy14532         77 LIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .|.++ +.+|+|.|.|.+...
T Consensus        75 ~I~~~-~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          75 TISAL-QLEDSAKYFCALSTL   94 (116)
T ss_pred             EECCC-CHHHCEEEEEEEECC
Confidence            99999 999999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.77  E-value=3.3e-08  Score=62.30  Aligned_cols=80  Identities=14%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             eecCCCceEEEEEEeec--CCCeEEEeeCCE--eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         13 TLQPGPPVSLKCIATGN--PTPHISWKLDGY--PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      .+.+|++|+|.|.....  ....+.|||...  ....-   .............++... ......+|.|.++ +.+|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l---~~~~~~~~~~~~~rf~~~-~~~~~~~L~I~~~-~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYL---IYEDSDRPSGIPDRFSGS-KSGNTASLTISGA-QTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEE---EEeccccCCCCCCCEEEE-ccCCEEEEEECCC-ChhhCE
Confidence            57899999999998654  456799998421  11100   000000000000111110 1112346999999 999999


Q ss_pred             EEEEEEEeC
Q psy14532         89 VYWCTATNK   97 (258)
Q Consensus        89 ~Y~C~~~~~   97 (258)
                      .|.|.+.+.
T Consensus        77 ~Y~C~~~~~   85 (98)
T cd04984          77 DYYCQVWDS   85 (98)
T ss_pred             EEEEEEccC
Confidence            999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.73  E-value=8.6e-08  Score=62.66  Aligned_cols=88  Identities=17%  Similarity=0.157  Sum_probs=51.1

Q ss_pred             eeceeeeecCCCceEEEEEEeecC------CCeEEEeeCCEeCcCCccccceecccceeeccccccceee-----eeCCc
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNGT   75 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   75 (258)
                      ..|..+.+.+|++|+|.|......      ...+.|||....-....  ..............+..|...     ..+.+
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~--~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s   81 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRP--PVATNNRSRLVHESTRGRFRLLGDLGKKNCS   81 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCC--cEEEcCCCccccccccccEEEecCCCCCEEE
Confidence            356778899999999999865321      34689998532100000  000001011111122233222     22457


Q ss_pred             EEEeecccCCCceEEEEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.|.++ +.+|+|.|.|.+...
T Consensus        82 L~I~~l-~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDA-QPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccC-ChhhCeEEEEEEEcC
Confidence            999999 999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.70  E-value=1.7e-08  Score=60.23  Aligned_cols=61  Identities=36%  Similarity=0.596  Sum_probs=42.1

Q ss_pred             cCCcEEEEeeeCccc-CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        126 AGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      .+..+.|.|.+.+.+ .+.+.|+.................+.|.|.++.. +|.|.|+|.|.|
T Consensus        14 ~~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~~~g~y~C~a~N   75 (75)
T PF13927_consen   14 SGGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTR-SDNGTYTCIASN   75 (75)
T ss_dssp             TTEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCG-GGTEEEEEEEEE
T ss_pred             eceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCH-HhCcEEEEEEEC
Confidence            333499999998877 8899999111111111222233456799999987 999999999986

...

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.66  E-value=2.4e-07  Score=57.73  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc---ceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR---RQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      |.+...+...+..|++|+|.|.... ....+.|+|++.......   .........+.|.+++. +|+|.|.|....
T Consensus         2 P~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCc-ccCEEEEEEEEC
Confidence            3444555667889999999998754 445799999887643211   00011223688999987 999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.64  E-value=5.6e-07  Score=53.80  Aligned_cols=79  Identities=16%  Similarity=0.294  Sum_probs=49.8

Q ss_pred             ceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532         19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .+.|.|.+.+ .|...|.|+|++.++...... .....            .......+|.+..- ..+|...|+|.+.+.
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~------------~~~t~~S~L~~~p~-~eDdG~~~~C~a~~~   66 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWS------------RMFTVTSQLMLKVT-KEDDGVPVICLVDHP   66 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccC------------CCcEEEEEEEEECc-hhhCCCEEEEEEcCc
Confidence            3789999877 588899999999888654110 00000            01112335666555 777778999999987


Q ss_pred             CcceeeceEEEEEe
Q psy14532         98 QGRSSSQNVHISVT  111 (258)
Q Consensus        98 ~~~~~~~~~~l~v~  111 (258)
                      ..........|.|.
T Consensus        67 ~l~~~~~~~~L~V~   80 (82)
T cd05883          67 AVKDLQTQRYLEVQ   80 (82)
T ss_pred             ccCCceeeEEEEEE
Confidence            64333356666654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.60  E-value=5.6e-07  Score=55.71  Aligned_cols=68  Identities=21%  Similarity=0.343  Sum_probs=48.4

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCccc--------CCCcceEEec-CC---eEEEEecccCCCCcEEEEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL--------PLNRRQKVFP-NG---TLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~~-~~---~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      ..+.+.+|+++.|.|.+.+.....+.|++-+..+        ....++.... ++   +|.|.++.. +|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEEc
Confidence            4567889999999999987655667777644221        2333444322 12   589999997 999999999986


Q ss_pred             C
Q psy14532        188 K  188 (258)
Q Consensus       188 ~  188 (258)
                      .
T Consensus        84 ~   84 (95)
T cd05881          84 D   84 (95)
T ss_pred             c
Confidence            4

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.59  E-value=5.4e-07  Score=58.62  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=47.9

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee--e---CCcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF--P---NGTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~l~i   78 (258)
                      .|....+.+|++|+|.|......  ...+.|||..  +....-  ...............+..+....  .   ...|.|
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l--~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I   80 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWI--GFINPGGGETYYADSVKGRFTITRDTSKSTVYLQL   80 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEE--EEEecCCCceEeCcccCCcEEEEEEccCCEEEEEE
Confidence            45667889999999999876432  4579999842  211000  00000000000011111222221  1   125899


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ ..+|+|.|.|.+..
T Consensus        81 ~~~-~~~Dsa~YyCa~~~   97 (117)
T cd04981          81 NSL-TPEDTAVYYCARGL   97 (117)
T ss_pred             CCC-CHHHCEEEEEEEEc
Confidence            999 99999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.58  E-value=1.1e-07  Score=59.98  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=48.7

Q ss_pred             eeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEeecccCC
Q psy14532         12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKDH   85 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~   85 (258)
                      +.+.+|++|+|.|.... .....+.|+|.......    ..+ . ........+..+..+.     ...+|.|.++ +.+
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~----~~l-~-~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~   74 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCC----LII-V-SEGSVQSQYEGRVSLTDDPDNGVFTVTLNQL-RKE   74 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCC----eEE-E-CCCccccccCCCEEEEecCCCCEEEEEEcCC-CHH
Confidence            45789999999998765 34567999985321100    000 0 0011111222232222     2346999999 999


Q ss_pred             CceEEEEEEEeCC
Q psy14532         86 DRGVYWCTATNKQ   98 (258)
Q Consensus        86 d~G~Y~C~~~~~~   98 (258)
                      |+|.|.|.+....
T Consensus        75 DsG~Y~C~~~~~~   87 (98)
T cd05716          75 DAGWYWCGVGDDG   87 (98)
T ss_pred             HCEEEEEEcccCC
Confidence            9999999987654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.58  E-value=9.3e-07  Score=56.69  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=49.7

Q ss_pred             cCCcEEEEeeeCccc------------CceEEEEeCC--ccc--------------CCCcceEEe------cCCeEEEEe
Q psy14532        126 AGEPLYLGCPVAGYP------------IESITWQKGV--QQL--------------PLNRRQKVF------PNGTLLIEN  171 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~------------~~~i~W~~~~--~~~--------------~~~~~~~~~------~~~~l~i~~  171 (258)
                      .|++++|.|......            .+.|.|++..  ...              ....+..+.      .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999885422            3589999842  110              111233332      355799999


Q ss_pred             cccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       172 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      ++. +|+|.|.|.+.+... ..+..+.|.|.
T Consensus        81 l~~-sDsG~Y~C~V~~g~~-~~~~~v~l~v~  109 (112)
T cd05900          81 LRS-NDSGTYRCEVMHGIE-DNYDTVEVQVK  109 (112)
T ss_pred             ccc-ccCEEEEEEEecCCC-CceeEEEEEEE
Confidence            998 999999999997644 34455556554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.57  E-value=5.5e-07  Score=54.57  Aligned_cols=60  Identities=22%  Similarity=0.314  Sum_probs=39.7

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCcceEEe-cCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVF-PNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~-~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|.|.+.+ +|.+.|+|++++..+......... .+++      |.+..... ++++.|+|.|.|...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhc
Confidence            689999966 688899999999877533211111 2222      33333333 667799999999864

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.55  E-value=9.2e-07  Score=55.09  Aligned_cols=81  Identities=12%  Similarity=0.176  Sum_probs=51.7

Q ss_pred             cceeeceeeeecCCCceEEEEEEee-cCCCe--EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPH--ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ++...+.+..+.+|+.++|.|.+.+ .|...  +.|||++..+.......  ..            ........+|.+.-
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--~~------------~~~~~~~stlt~~~   68 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--NT------------KSPVNAPATITITV   68 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--cc------------CCCceeEEEEEEec
Confidence            4556666677899999999999987 46665  79999998875431100  00            00011223455554


Q ss_pred             cccCCCceEEEEEEEeCCc
Q psy14532         81 VQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~   99 (258)
                      . +.+|...|+|.+.+...
T Consensus        69 ~-r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          69 D-REDHGANFSCETELDLR   86 (100)
T ss_pred             c-hhhCCcEEEEEEEeccC
Confidence            4 55555699999987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.55  E-value=3e-07  Score=58.89  Aligned_cols=83  Identities=19%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             eecCCCceEEEEEEeec-CCCeEEEeeCCEeC-cCCccccceec-ccceeecccc-ccceee--ee---CCcEEEeeccc
Q psy14532         13 TLQPGPPVSLKCIATGN-PTPHISWKLDGYPL-AGDRHENKNRI-GEARVQQLPL-NRRQKV--FP---NGTLLIENVQK   83 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~---~~~l~i~~~~~   83 (258)
                      .+.+|++|+|.|...+. ....+.|||..... ......-.... .........+ ..+...  ..   ...|.|.++ +
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-K   80 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-C
Confidence            57899999999998653 34579999852210 00000000000 0000000001 111111  11   235999999 9


Q ss_pred             CCCceEEEEEEEe
Q psy14532         84 DHDRGVYWCTATN   96 (258)
Q Consensus        84 ~~d~G~Y~C~~~~   96 (258)
                      .+|+|.|.|....
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999764

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.55  E-value=3e-07  Score=57.69  Aligned_cols=76  Identities=24%  Similarity=0.358  Sum_probs=52.6

Q ss_pred             ecCCcEEEEeeeCc-ccCceEEEEeCCcccC-----------------CCcceEEec-CCeEEEEecccCCCCcEEEEEE
Q psy14532        125 IAGEPLYLGCPVAG-YPIESITWQKGVQQLP-----------------LNRRQKVFP-NGTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       125 ~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~-----------------~~~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      ..|++|+|.|.... .....+.|++....+.                 ...+..+.. +.+|.|.+++. +|+|.|.|.+
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~-~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKM-EDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCch-HHCEEEEEEE
Confidence            36899999998754 4456899997532110                 011233323 36799999998 9999999999


Q ss_pred             EeCCCCCccceEEEEe
Q psy14532        186 TNKQGRSSSQNVHISV  201 (258)
Q Consensus       186 ~~~~~~~~~~~~~l~v  201 (258)
                      ....+......+.|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9887655556666655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.54  E-value=1e-06  Score=56.74  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcc--c------------CCCcceEEec-----CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ--L------------PLNRRQKVFP-----NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~--~------------~~~~~~~~~~-----~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|++++|.|.+.+.+...+.|++....  .            ....++.+..     ...|.|.+++. +|+|
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG   83 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SDSA   83 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HHCE
Confidence            4456788999999999998767779999985321  0            0122333321     23699999997 9999


Q ss_pred             EEEEEEEeCC
Q psy14532        180 VYWCTATNKQ  189 (258)
Q Consensus       180 ~y~C~~~~~~  189 (258)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.50  E-value=1.2e-06  Score=56.05  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=50.5

Q ss_pred             cCCcEEEEeeeCccc------CceEEEEeCC---cc---c--CCC----------cceEE----ecCCeEEEEecccCCC
Q psy14532        126 AGEPLYLGCPVAGYP------IESITWQKGV---QQ---L--PLN----------RRQKV----FPNGTLLIENVQKDHD  177 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~------~~~i~W~~~~---~~---~--~~~----------~~~~~----~~~~~l~i~~~~~~~~  177 (258)
                      .|++++|.|.....+      ...|.|++..   ..   +  ...          .+...    ..+.+|.|.+++. +|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence            488999999986532      4589999862   10   0  000          01111    1235799999997 99


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      +|.|.|.+.+..+ .....+.|.|..
T Consensus        80 ~G~Y~C~v~~~~~-~~~~~v~L~V~~  104 (106)
T cd05714          80 SGRYRCEVIDGIE-DEQDTVELEVRG  104 (106)
T ss_pred             CEEEEEEEEcCCC-ceEEEEEEEEEE
Confidence            9999999998654 445677777653

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.50  E-value=6.4e-07  Score=57.24  Aligned_cols=66  Identities=26%  Similarity=0.375  Sum_probs=46.6

Q ss_pred             ceecCCcEEEEeeeCcc-cCceEEEEeCCcc--c---------------CCCcceEEe-----cCCeEEEEecccCCCCc
Q psy14532        123 SAIAGEPLYLGCPVAGY-PIESITWQKGVQQ--L---------------PLNRRQKVF-----PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~--~---------------~~~~~~~~~-----~~~~l~i~~~~~~~~~g  179 (258)
                      .+.+|+.++|.|.+... +...+.|++....  .               ....+..+.     ....|.|.+++. +|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence            46789999999998775 5678999984321  0               011222221     123689999998 9999


Q ss_pred             EEEEEEEeCC
Q psy14532        180 VYWCTATNKQ  189 (258)
Q Consensus       180 ~y~C~~~~~~  189 (258)
                      .|.|.+.+..
T Consensus        81 ~Y~C~v~~~~   90 (105)
T cd00099          81 VYYCAVSLSG   90 (105)
T ss_pred             EEEEEEecCC
Confidence            9999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.50  E-value=1.7e-06  Score=51.67  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             eeeecCCCceEEEEEEeecCC--CeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532         11 QQTLQPGPPVSLKCIATGNPT--PHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      +..+..|++++|+|.....+.  +.++|...+. .+...                       .....+|.+.++ ...|+
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----------------------~~~~ktL~~~qv-~~qdS   63 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----------------------NQDKKTLNLVQL-GPNDS   63 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec-----------------------cCCccEEEecee-CcccC
Confidence            456889999999999865444  4999996432 22111                       012458999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEe
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |.++|.+........ ..+.+.|.
T Consensus        64 G~WtC~V~~~~k~~~-~~~~V~Vl   86 (88)
T cd07694          64 GTWDCIVSVNSSEKT-LKLDIKVL   86 (88)
T ss_pred             CEEEEEEEECceEEE-EEeeEEEE
Confidence            999999986532222 44555543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.47  E-value=3.2e-06  Score=51.23  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCcc-eEEecC-Ce------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNRR-QKVFPN-GT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~-~~~~~~-~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|.|.+.+ +|.+.|+|++++..+..... .....+ ++      |.+.... +++...|+|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~-~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTR-EDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecc-hhCCCEEEEEEECccc
Confidence            689999977 68889999999987654322 111222 23      3333333 3677899999999864

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.46  E-value=1.7e-06  Score=54.67  Aligned_cols=73  Identities=22%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             CCcEEEEeeeCccc---CceEEEEeCCcc-----------cC------CCcceEEe------cCCeEEEEecccCCCCcE
Q psy14532        127 GEPLYLGCPVAGYP---IESITWQKGVQQ-----------LP------LNRRQKVF------PNGTLLIENVQKDHDRGV  180 (258)
Q Consensus       127 g~~~~l~C~~~~~~---~~~i~W~~~~~~-----------~~------~~~~~~~~------~~~~l~i~~~~~~~~~g~  180 (258)
                      |+++.|.|......   ...+.|++....           ..      ...+..+.      .+.+|.|.+++. +|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence            67899999875321   236888874311           00      11222221      124699999997 99999


Q ss_pred             EEEEEEeCCCCCccceEEEEe
Q psy14532        181 YWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       181 y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      |+|.+.+..+. ....+.|.|
T Consensus        80 Y~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          80 YTCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEEecCCcE-EEEEEEEEE
Confidence            99999986553 445555554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.46  E-value=1.7e-06  Score=55.35  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=49.8

Q ss_pred             cCCcEEEEeeeCccc------CceEEEEeCCcc--------cC----------CCcceEEec----CCeEEEEecccCCC
Q psy14532        126 AGEPLYLGCPVAGYP------IESITWQKGVQQ--------LP----------LNRRQKVFP----NGTLLIENVQKDHD  177 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~------~~~i~W~~~~~~--------~~----------~~~~~~~~~----~~~l~i~~~~~~~~  177 (258)
                      .|++++|.|.....|      ...|.|++....        +.          ...+..+..    +.+|.|.+++. +|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence            488999999876542      357999985311        00          112222211    24699999997 99


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEee
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +|.|.|.+.+..+ .....+.|.|.
T Consensus        80 sG~Y~C~v~~~~~-~~~~~~~l~v~  103 (106)
T cd05877          80 YGRYRCEVIDGLE-DESVVVALRLR  103 (106)
T ss_pred             CEEEEEEEEeccc-ceEEEEEEEEE
Confidence            9999999988765 34566666664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.45  E-value=2.3e-06  Score=55.29  Aligned_cols=71  Identities=23%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             CCCcceecCCcEEEEeeeCcc----cCceEEEEe---------------CCcccC-----CCcceEE-----ecCCeEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY----PIESITWQK---------------GVQQLP-----LNRRQKV-----FPNGTLLI  169 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~----~~~~i~W~~---------------~~~~~~-----~~~~~~~-----~~~~~l~i  169 (258)
                      +..+.+..|+.+.|.|.+...    +...+.|..               ++....     ...+...     ..+.++.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            345678899999999998542    245899943               222211     1122222     23457999


Q ss_pred             EecccCCCCcEEEEEEEeCCC
Q psy14532        170 ENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       170 ~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+++. +|.|.|+|.+.|...
T Consensus        85 ~nv~~-sD~G~Y~C~v~n~p~  104 (116)
T cd05879          85 HNLDY-TDNGTFTCDVKNPPD  104 (116)
T ss_pred             ccCCc-ccCEEEEEEEEcCCC
Confidence            99998 999999999998754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.45  E-value=1.2e-06  Score=54.80  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             cCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532         15 QPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      ..|+.++|.|.+.++ | ...++|+++|..+............          ..........|.|... ...|.+.|+|
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~----------~~gt~~~~s~l~v~~~-~~~~~~~y~C   79 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPN----------SDGTYSVSSQLTVSPS-DWNSGDTYTC   79 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccC----------CCCCEEEEEEEEECHH-HhCCCCCEEE
Confidence            479999999999997 5 3589999999887655210000000          0001111223555555 5569999999


Q ss_pred             EEEeCCcc
Q psy14532         93 TATNKQGR  100 (258)
Q Consensus        93 ~~~~~~~~  100 (258)
                      .+.+....
T Consensus        80 ~v~h~~~~   87 (95)
T cd00098          80 VVTHESLP   87 (95)
T ss_pred             EEEeCCCC
Confidence            99987643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.44  E-value=3.5e-06  Score=50.99  Aligned_cols=60  Identities=20%  Similarity=0.269  Sum_probs=40.3

Q ss_pred             EEEEeeeCc-ccCceEEEEeCCcccCCCcceEE--ecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQKV--FPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~--~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|.|.+.+ +|...|+|++++..+........  ..++      .|.+..... ++...|+|+|.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechhc
Confidence            689999977 77889999999988754322111  1222      344444333 667799999998753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.44  E-value=3.7e-07  Score=58.05  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             eecCCCceEEEEEEeecCCCeEEEeeCCEe-CcCCccccceecccce--eeccccccceee---eeCCcEEEeecccCCC
Q psy14532         13 TLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEAR--VQQLPLNRRQKV---FPNGTLLIENVQKDHD   86 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~l~i~~~~~~~d   86 (258)
                      .+.+|++|+|.|.........+.|||.... ................  ........+...   ....+|.|.++ +.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHH
Confidence            468999999999886544567999985311 0000000000000000  001111111111   12346999999 9999


Q ss_pred             ceEEEEEEEe
Q psy14532         87 RGVYWCTATN   96 (258)
Q Consensus        87 ~G~Y~C~~~~   96 (258)
                      +|.|.|.+..
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.43  E-value=4.9e-06  Score=54.12  Aligned_cols=71  Identities=25%  Similarity=0.436  Sum_probs=46.7

Q ss_pred             CCCcceecCCcEEEEeeeCccc----CceEEEEeCCc--c-----c--------C-CC----cceEEec-----CCeEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP----IESITWQKGVQ--Q-----L--------P-LN----RRQKVFP-----NGTLLI  169 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~~~--~-----~--------~-~~----~~~~~~~-----~~~l~i  169 (258)
                      +..+.+..|+.++|.|......    ...+.|++...  .     +        . ..    .+..+..     +.+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556788999999999875422    24699986321  0     0        0 00    1111111     246999


Q ss_pred             EecccCCCCcEEEEEEEeCCC
Q psy14532        170 ENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       170 ~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+++. +|+|.|.|.+.+...
T Consensus        85 ~~v~~-~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQF-TDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCc-ccCEEEEEEEEeCCC
Confidence            99998 999999999998754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.42  E-value=3.5e-06  Score=51.01  Aligned_cols=69  Identities=19%  Similarity=0.332  Sum_probs=41.8

Q ss_pred             ceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532         19 PVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        19 ~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .+.|.|.+.+. |.+.|.|+++++.+....   .....        ... ........|.+... ..++.+.|+|.+.+.
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~---~~~~~--------~~~-~~~~~~s~l~~~~~-~~d~g~~~~C~v~h~   67 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGVK---LKEED--------ENG-KTFTVTSSLRFQVD-REDDGAPIICRVDHP   67 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCce---eeEec--------CCC-CEEEEEEEEEEEcc-hhhCCCEEEEEEeCh
Confidence            37899999875 788999999998875331   00000        000 01111223444444 555667999999987


Q ss_pred             Ccc
Q psy14532         98 QGR  100 (258)
Q Consensus        98 ~~~  100 (258)
                      ...
T Consensus        68 ~l~   70 (82)
T cd05761          68 ALK   70 (82)
T ss_pred             hcC
Confidence            644

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.41  E-value=2.9e-06  Score=53.44  Aligned_cols=72  Identities=26%  Similarity=0.469  Sum_probs=45.8

Q ss_pred             CcEEEEeeeCccc---CceEEEEeCCcc---------------cC--CCcceEEe----cCCeEEEEecccCCCCcEEEE
Q psy14532        128 EPLYLGCPVAGYP---IESITWQKGVQQ---------------LP--LNRRQKVF----PNGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       128 ~~~~l~C~~~~~~---~~~i~W~~~~~~---------------~~--~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C  183 (258)
                      ++++|.|.....+   ...|.|++....               +.  ...+..+.    .+.+|.|.+++. +|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence            4789999886533   447999985431               00  01122222    245799999997 99999999


Q ss_pred             EEEeC-CCCCccceEEEEe
Q psy14532        184 TATNK-QGRSSSQNVHISV  201 (258)
Q Consensus       184 ~~~~~-~~~~~~~~~~l~v  201 (258)
                      .+... .+ .....+.|.|
T Consensus        80 ~v~~~~~g-~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQG-NRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCC-cEEEEEEEEe
Confidence            99754 34 3445555554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.40  E-value=6.3e-06  Score=51.23  Aligned_cols=78  Identities=22%  Similarity=0.336  Sum_probs=46.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL---   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---   76 (258)
                      ||.+........   |+.++|.|.+.++ |.. .+.|+++++.+..........                ...+++.   
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~----------------~~~d~ty~~~   62 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEIL----------------PNGDGTYQLW   62 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceE----------------ECCCCeEEEE
Confidence            677755443332   7889999999995 443 899999986433221111100                0112221   


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+.+.|+|.+.+...
T Consensus        63 s~l~v-~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          63 VTLEV-PPEDKARYSCRVEHSGL   84 (93)
T ss_pred             EEEEE-CCCCCCEEEEEEEeCCC
Confidence            13344 55588999999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.39  E-value=2.1e-06  Score=53.52  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             ceecCCcEEEEeeeCc-ccCce--EEEEeCCcccCCCcceE-----EecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        123 SAIAGEPLYLGCPVAG-YPIES--ITWQKGVQQLPLNRRQK-----VFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~-~~~~~--i~W~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      .+.+|+.++|.|.+.+ .|.+.  |.|++++..+.......     .....++.+... +++|...|+|+|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence            4679999999999976 67775  79999988775422111     112234555543 435555999999987653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.37  E-value=5.9e-06  Score=49.40  Aligned_cols=64  Identities=14%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      ...+..|++++|+|.....+  .+.|.|...+...-   ........+|.+.++.. .|+|.++|.+...
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~---~~~~~~~ktL~~~qv~~-qdSG~WtC~V~~~   73 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK---QILNQDKKTLNLVQLGP-NDSGTWDCIVSVN   73 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc---eeccCCccEEEeceeCc-ccCCEEEEEEEEC
Confidence            44678999999999996534  45999987443311   11113456799999997 9999999999865

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.36  E-value=2.8e-06  Score=54.72  Aligned_cols=68  Identities=18%  Similarity=0.313  Sum_probs=48.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--ccC----------------CCcceEEe----cCCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QLP----------------LNRRQKVF----PNGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~~----------------~~~~~~~~----~~~~l~i~~~~~~~  176 (258)
                      +....+.+|++++|.|.+.+ +...+.|+|...  ...                ...+....    ...+|.|.+++. +
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~-~   82 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP-E   82 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh-h
Confidence            44567889999999999977 667899998532  111                01222221    123699999997 9


Q ss_pred             CCcEEEEEEEeC
Q psy14532        177 DRGVYWCTATNK  188 (258)
Q Consensus       177 ~~g~y~C~~~~~  188 (258)
                      |+|.|.|.+.+.
T Consensus        83 Dsg~Y~Ca~~~~   94 (110)
T cd05899          83 DSAVYLCASSLG   94 (110)
T ss_pred             hCEEEEEEeeCC
Confidence            999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.35  E-value=5.2e-06  Score=53.34  Aligned_cols=76  Identities=22%  Similarity=0.365  Sum_probs=50.2

Q ss_pred             cCCcEEEEeeeCccc----------CceEEEEeCC--ccc--------------CCCcceEEe------cCCeEEEEecc
Q psy14532        126 AGEPLYLGCPVAGYP----------IESITWQKGV--QQL--------------PLNRRQKVF------PNGTLLIENVQ  173 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~----------~~~i~W~~~~--~~~--------------~~~~~~~~~------~~~~l~i~~~~  173 (258)
                      .|++++|.|.....+          ...|.|++..  ...              ....+..+.      .+.+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999885432          2579999852  111              011232221      23469999999


Q ss_pred             cCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        174 KDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      . +|+|.|.|.+..... .....+.|.|..
T Consensus        81 ~-sD~G~Y~C~v~~~~~-~~~~~v~l~V~g  108 (110)
T cd05878          81 S-SDSGVYRCEVMHGIE-DEQDTVPLEVTG  108 (110)
T ss_pred             h-hhCEEEEEEEEeCCC-cceEEEEEEEEE
Confidence            8 999999999998543 445666776653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.33  E-value=1e-05  Score=52.42  Aligned_cols=71  Identities=24%  Similarity=0.374  Sum_probs=46.8

Q ss_pred             CCCcceecCCcEEEEeeeCccc----CceEEEEeC---Ccc---c-------------CCCcceEEe-----cCCeEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP----IESITWQKG---VQQ---L-------------PLNRRQKVF-----PNGTLLIE  170 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~---~~~---~-------------~~~~~~~~~-----~~~~l~i~  170 (258)
                      +..+.+..|++++|.|.....+    ...|.|++.   +..   +             ....+..+.     .+.+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4556788999999999875322    236999752   111   0             000111111     23469999


Q ss_pred             ecccCCCCcEEEEEEEeCCC
Q psy14532        171 NVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       171 ~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +++. +|+|.|+|.+.+...
T Consensus        85 ~v~~-~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQP-TDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCCh-hhCEEEEEEEEeCCC
Confidence            9998 999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.33  E-value=2.2e-06  Score=53.64  Aligned_cols=65  Identities=23%  Similarity=0.414  Sum_probs=45.3

Q ss_pred             ecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        125 IAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..|+.+.|.|.+.|. | ...++|++++..+.....   .....+++      |.+..... .+.+.|+|.|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCC
Confidence            467899999999986 5 468999999987765432   11223333      44444333 689999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.32  E-value=5.4e-06  Score=53.03  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CCCcceecCCcEEEEeeeCccc-CceEEEEeCC--cccC------------CCcceEEecC---CeEEEEecccCCCCcE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQKGV--QQLP------------LNRRQKVFPN---GTLLIENVQKDHDRGV  180 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~~~--~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~  180 (258)
                      +....+.+|++++|.|.+.+.. ...+.|++..  ....            ...+.....+   ..|.|.++.. +|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsg~   85 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP-EDAAV   85 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh-HHCEE
Confidence            4456788999999999987654 5679999843  1110            0112222211   2588999997 99999


Q ss_pred             EEEEEEeC
Q psy14532        181 YWCTATNK  188 (258)
Q Consensus       181 y~C~~~~~  188 (258)
                      |.|.+.+.
T Consensus        86 Y~Ca~~~~   93 (106)
T cd04980          86 YYCQQYGT   93 (106)
T ss_pred             EEEEEeCC
Confidence            99998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.32  E-value=1e-05  Score=48.95  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=41.8

Q ss_pred             eEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      ++|.|.+.+ .|...++|+|+|..+.....   ...        ............+|.+... ...+...|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~---~~~--------~~~~~~t~~~~s~L~~~~~-~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY---LKE--------EDANRKTFTVSSTLDFRVD-RSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCcee---eEe--------eCCCCCEEEEEEEEEEEcc-cccCCCEEEEEEechh
Confidence            689999988 46789999999998754311   000        0000011112234555544 5666789999999865


Q ss_pred             cc
Q psy14532         99 GR  100 (258)
Q Consensus        99 ~~  100 (258)
                      ..
T Consensus        70 l~   71 (83)
T cd05884          70 LN   71 (83)
T ss_pred             cC
Confidence            43

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.32  E-value=1.7e-05  Score=49.03  Aligned_cols=79  Identities=16%  Similarity=0.222  Sum_probs=48.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE--
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL--   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--   77 (258)
                      ||.+.+.... .+..|+..+|.|.+.++ | ...+.|.|+|+.+. ........                ...+++..  
T Consensus         1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~----------------p~~d~tyq~~   62 (93)
T cd05770           1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLS----------------FSKDWTFYLL   62 (93)
T ss_pred             CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEE----------------ECCCCCEEEE
Confidence            4666443222 34567788999999995 3 44899999999876 42111111                11233332  


Q ss_pred             -EeecccCCCceEEEEEEEeCCc
Q psy14532         78 -IENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        78 -i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                       ...+ ...+...|+|.+.+...
T Consensus        63 s~l~~-~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          63 KSTEF-TPTKGDEYACRVRHNSM   84 (93)
T ss_pred             EEEEE-CCCCCCeEEEEEEECCC
Confidence             2334 56678899999988643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.30  E-value=1.5e-05  Score=49.43  Aligned_cols=44  Identities=20%  Similarity=0.543  Sum_probs=30.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      ||++.+-... ....|+.++|.|.+.++ | ...++|.++|..+...
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~   46 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG   46 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCc
Confidence            5666443322 24457778999999995 4 3589999999887543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.30  E-value=1.4e-05  Score=48.50  Aligned_cols=69  Identities=16%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             eEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         20 VSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        20 v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      +.|+|.+.+. |...|.|+++|+.+..... .....+          ..........|.+... ..+|...|+|.+.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~----------~~~t~~~~s~l~~~~~-~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDG----------NGKTFTVSSSVEFQVT-REDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECC----------CCCEEEEEEEEEEEec-chhCCCEEEEEEECcc
Confidence            6899999885 7889999999988765311 000000          0001111233555444 5667789999999876


Q ss_pred             cc
Q psy14532         99 GR  100 (258)
Q Consensus        99 ~~  100 (258)
                      ..
T Consensus        70 l~   71 (83)
T cd07705          70 LH   71 (83)
T ss_pred             cC
Confidence            43

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>smart00406 IGv Immunoglobulin V-Type

Probab=98.28  E-value=2.3e-06  Score=51.73  Aligned_cols=74  Identities=22%  Similarity=0.290  Sum_probs=39.1

Q ss_pred             ceEEEEEEeecCC--CeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEeecccCCCceEEE
Q psy14532         19 PVSLKCIATGNPT--PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        19 ~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      +|+|.|.+.....  ..+.|++......... ...............+..|....     ...+|.|.++ +.+|+|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~   78 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEW-LGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYY   78 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEE-EEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEE
Confidence            4789999876443  3799998532100000 00000001111111222232222     2356999999 999999999


Q ss_pred             EEE
Q psy14532         92 CTA   94 (258)
Q Consensus        92 C~~   94 (258)
                      |.+
T Consensus        79 C~v   81 (81)
T smart00406       79 CAV   81 (81)
T ss_pred             EcC
Confidence            963

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.28  E-value=6.8e-06  Score=51.75  Aligned_cols=87  Identities=16%  Similarity=0.274  Sum_probs=49.9

Q ss_pred             CCcceee-ceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYK-FIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~-~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ||.+..- +.......++.++|.|.+.++ | ...|.|+++|+.+............          ..........|.+
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~----------~dgty~~~s~L~v   70 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQ----------SDNTYSLSSYLTL   70 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEEC----------CCCCEEEEEEEEE
Confidence            5666443 333345578889999999985 4 4589999999987543111111000          0000111223444


Q ss_pred             eecccCCCceEEEEEEEeCCc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ..- ...+...|+|.+.+...
T Consensus        71 ~~~-~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          71 TKS-DWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             cHH-HhCCCCeEEEEEEecCC
Confidence            433 34456899999988653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.23  E-value=7.3e-06  Score=53.37  Aligned_cols=68  Identities=22%  Similarity=0.458  Sum_probs=47.7

Q ss_pred             CCCcceecCCcEEEEeeeCc--ccCceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG--YPIESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~  172 (258)
                      +..+.+.+|++++|.|.+.+  .+...+.|++..  ....                 ...++.+..     ...|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            34566788999999999876  567789999842  2110                 112333321     236899999


Q ss_pred             ccCCCCcEEEEEEEe
Q psy14532        173 QKDHDRGVYWCTATN  187 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~  187 (258)
                      .. +|+|.|.|.+..
T Consensus        85 ~~-~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EK-EDSATYYCAYWE   98 (116)
T ss_pred             CH-HHCEEEEEEEec
Confidence            98 999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.23  E-value=1.1e-05  Score=50.67  Aligned_cols=64  Identities=19%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             ceecCCcEEEEeeeCcc--cCceEEEEeCCc--ccC------------CCcceEEecC---CeEEEEecccCCCCcEEEE
Q psy14532        123 SAIAGEPLYLGCPVAGY--PIESITWQKGVQ--QLP------------LNRRQKVFPN---GTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~--~~~~i~W~~~~~--~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C  183 (258)
                      .+.+|++++|.|...+.  ....+.|++...  ...            ...+.....+   ..|.|.+++. +|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQT-EDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCh-hhCEEEEE
Confidence            46789999999998664  455799998432  111            0112222222   2589999997 99999999


Q ss_pred             EEEe
Q psy14532        184 TATN  187 (258)
Q Consensus       184 ~~~~  187 (258)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.22  E-value=2.7e-05  Score=48.38  Aligned_cols=73  Identities=25%  Similarity=0.406  Sum_probs=46.1

Q ss_pred             CcEEEEeeeCcc-cCceEEEEeCCc----cc-------------CCCcceEE----ecCCeEEEEecccCCCCcEEEEEE
Q psy14532        128 EPLYLGCPVAGY-PIESITWQKGVQ----QL-------------PLNRRQKV----FPNGTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       128 ~~~~l~C~~~~~-~~~~i~W~~~~~----~~-------------~~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      ++++|.|..... ....|+|.+...    .+             ....+...    ..+.+|.|.+++. +|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEE
Confidence            368899987642 334899987421    11             01112222    2356899999997 9999999998


Q ss_pred             EeCCCCCccceEEEEe
Q psy14532        186 TNKQGRSSSQNVHISV  201 (258)
Q Consensus       186 ~~~~~~~~~~~~~l~v  201 (258)
                      .....-..+..+.|.|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence            7654324556666655

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.21  E-value=1.9e-05  Score=54.22  Aligned_cols=84  Identities=21%  Similarity=0.399  Sum_probs=58.7

Q ss_pred             CcceecCCcEEEEeeeC-cccCceEEEEeCCcccC------------CCcceEE----ecCCeEEEEecccCCCCcEEEE
Q psy14532        121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLP------------LNRRQKV----FPNGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~------------~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C  183 (258)
                      ...+.+|+++.|.|... +...+.++|.|..+.+.            ..++..+    ..+..+.|.+++. +|+|.|.|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~-sDeGcY~C  102 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL-KDNGCYTC  102 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh-hhCeEEEE
Confidence            45678999999999984 55677899998643221            1122221    1345799999997 99999999


Q ss_pred             EEEeCC-CCCccceEEEEeecCC
Q psy14532        184 TATNKQ-GRSSSQNVHISVTVPP  205 (258)
Q Consensus       184 ~~~~~~-~~~~~~~~~l~v~~~p  205 (258)
                      .+.... |...+....|.|....
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEchh
Confidence            987654 4356677778887644

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.18  E-value=4.3e-05  Score=47.45  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=43.4

Q ss_pred             ecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE---EeecccCCCce
Q psy14532         14 LQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL---IENVQKDHDRG   88 (258)
Q Consensus        14 ~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~~d~G   88 (258)
                      +..|+.++|.|.+.++ |. ..+.|+++|+.+..........                ...+++..   ...+ ...+..
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~----------------~~~dgTy~~~s~L~~-~~~~~~   73 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELI----------------PNGDWTYQILVMLET-TPSRGD   73 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceE----------------ECCCCcEEEEEEEEE-cCCCCC
Confidence            3578999999999985 43 3899999998876531111100                01122221   2234 445677


Q ss_pred             EEEEEEEeCCcc
Q psy14532         89 VYWCTATNKQGR  100 (258)
Q Consensus        89 ~Y~C~~~~~~~~  100 (258)
                      .|+|.+.+....
T Consensus        74 ~ysC~V~H~~l~   85 (94)
T cd05766          74 TYTCVVEHSSLQ   85 (94)
T ss_pred             EEEEEEEeCCCC
Confidence            999999987643

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.18  E-value=1.9e-05  Score=50.84  Aligned_cols=91  Identities=18%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             CCCcce-eeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          1 SHPQLI-YKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         1 ~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ++|.+. ..+....+.+++.++|.|.+.++ |. ..|.|+|++..+..+..........         +.........|.
T Consensus         1 ~~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~---------~~gTYs~~S~L~   71 (115)
T cd05769           1 TPPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRE---------NTSTYSISSRLR   71 (115)
T ss_pred             CCCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecC---------CCCeEEEEEEEE
Confidence            467764 34444445577889999999985 44 4899999998876542111111100         000111122344


Q ss_pred             EeecccCCC-ceEEEEEEEeCCcce
Q psy14532         78 IENVQKDHD-RGVYWCTATNKQGRS  101 (258)
Q Consensus        78 i~~~~~~~d-~G~Y~C~~~~~~~~~  101 (258)
                      |... ...+ ...|+|.+.+.....
T Consensus        72 v~~~-~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          72 VSAT-EWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             EChH-HhccCCCeEEEEEEEeCCcc
Confidence            4433 3323 579999999875433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.17  E-value=5.7e-05  Score=48.42  Aligned_cols=35  Identities=29%  Similarity=0.620  Sum_probs=27.8

Q ss_pred             eeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcC
Q psy14532         11 QQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAG   45 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~   45 (258)
                      ...+..|+.++|.|.+.++ | ...++|+|||+.+..
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~   51 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA   51 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence            3445678899999999985 5 358999999998754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.17  E-value=1.7e-05  Score=48.94  Aligned_cols=85  Identities=21%  Similarity=0.385  Sum_probs=47.3

Q ss_pred             CcceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |.|.......... |+.+.|.|.+.+ .|.+.+.|+.++..+..... ......          .........+|.+..-
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~-~~~~~~----------~~~~~~~~S~l~~~~~   68 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNT-TQSSSP----------DNGLFTVSSTLTLTPT   68 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEE-EEEEET----------TTTTEEEEEEEEEETT
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeee-eeeecc----------CCCcceEEEEEEEEcC
Confidence            4555554333333 889999998754 78899999998766511100 000000          0001111224555444


Q ss_pred             ccCCCceEEEEEEEeCCcc
Q psy14532         82 QKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~  100 (258)
                       ..++...++|.+.+....
T Consensus        69 -~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   69 -REDHGKTLTCRASHPALS   86 (89)
T ss_dssp             -GGGTTEEEEEEEEETTCC
T ss_pred             -hHHCCeEEEEEEECCccC
Confidence             556778999999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.17  E-value=2.3e-05  Score=49.13  Aligned_cols=74  Identities=26%  Similarity=0.385  Sum_probs=46.8

Q ss_pred             CCcEEEEeeeCccc-CceEEEEeCCccc-----------------CCCcceEE----ecCCeEEEEecccCCCCcEEEEE
Q psy14532        127 GEPLYLGCPVAGYP-IESITWQKGVQQL-----------------PLNRRQKV----FPNGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       127 g~~~~l~C~~~~~~-~~~i~W~~~~~~~-----------------~~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      |++++|.|...... .-.+.|++.....                 ....+...    ..+.+|.|.+++. +|+|.|.|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence            68899999865432 2369998843210                 00111111    1234699999998 999999999


Q ss_pred             EEeCCCCCccceEEEEe
Q psy14532        185 ATNKQGRSSSQNVHISV  201 (258)
Q Consensus       185 ~~~~~~~~~~~~~~l~v  201 (258)
                      +........+..+.|.|
T Consensus        80 ~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEeCCCCCeeeEEEEEE
Confidence            88654334556666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00096 Ig Immunoglobulin domain

Probab=98.17  E-value=1.1e-05  Score=46.97  Aligned_cols=66  Identities=36%  Similarity=0.610  Sum_probs=45.0

Q ss_pred             eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      +.|.|.+.+.+...+.|++++.........            ..............|.|.++ ...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE------------EeccccCcceeEEEEEECcc-CcccCcEEEEEEecCc
Confidence            478999988677799999987665433110            00011112234557889999 8899999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.15  E-value=4.5e-06  Score=54.02  Aligned_cols=69  Identities=25%  Similarity=0.417  Sum_probs=47.7

Q ss_pred             CCCcceecCCcEEEEeeeC-cccCceEEEEeCCcc-----cC--------------CCcceEEecC-----CeEEEEecc
Q psy14532        119 MGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQ-----LP--------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~-----~~--------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      +..+.+.+|+++.|.|... ......+.|++....     +.              ...+..+..+     .+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            3456788999999999987 445568999984331     10              0111111111     259999999


Q ss_pred             cCCCCcEEEEEEEeC
Q psy14532        174 KDHDRGVYWCTATNK  188 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~  188 (258)
                      . +|+|.|.|.+...
T Consensus        88 ~-~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 P-SDSGTYFCQVSTS  101 (114)
T ss_dssp             G-GGEEEEEEEEEES
T ss_pred             c-CcCEEEEEEEEEC
Confidence            7 9999999999986

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>KOG1480|consensus

Probab=98.14  E-value=1.4e-06  Score=71.55  Aligned_cols=190  Identities=20%  Similarity=0.293  Sum_probs=110.0

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |.|+..+.+..+..|.++.|.|.+...  +++.+.-++.-+....+......+..  .       .......++.|... 
T Consensus        25 ~~~~~~p~~~yii~~~p~~l~c~a~~a--~~i~~kc~~~wv~~~~~~~~~~~d~t--s-------g~~~~~~si~Isr~-   92 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKNKPLRLQCKANPA--TQIRFKCNSEWVHQSRHEKLEGTDET--S-------GLGVREVSIDISRQ-   92 (909)
T ss_pred             ceeeecCCccceecCCCccceecCCcc--cccccccChhhhcCccceeeeccCcc--c-------ceeEEeeeeeeehh-
Confidence            456778888889999999999987643  33333222222222111111000000  0       01111223444443 


Q ss_pred             cCCCc---eEEEEE--EEeCCcceeeceEEEEEec--CCeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCcccC
Q psy14532         83 KDHDR---GVYWCT--ATNKQGRSSSQNVHISVTG--APFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLP  154 (258)
Q Consensus        83 ~~~d~---G~Y~C~--~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~  154 (258)
                      ..++.   .-|.|+  +....|...+....+.+.+  +-+...+.-..+..+..+++.|.. .+.|...+.|++++..+.
T Consensus        93 ~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~  172 (909)
T KOG1480|consen   93 QVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID  172 (909)
T ss_pred             hhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCC
Confidence            33332   246654  4444442221211111111  112222333456677788888876 678888999999998887


Q ss_pred             CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       155 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      ...+........+.+.++.. .|.|+|+|++.|..++.....+.+.++...
T Consensus       173 pd~n~~~~~d~~li~~~arl-sd~~nytc~a~ni~~~r~~~~~~v~vyv~g  222 (909)
T KOG1480|consen  173 PDANVIRASDHNLIISQARL-SDSGNYTCEATNIVAKRKSDPATVQVYVNG  222 (909)
T ss_pred             ccccchhhhcCCccccchhh-hhcccceeeeehhhccccccceEEEEEEcC
Confidence            76555556677888988885 999999999999988777777777776543

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.14  E-value=3.5e-05  Score=45.76  Aligned_cols=69  Identities=16%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             ceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532         19 PVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        19 ~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++|.|.+.++ |. ..+.|+|+|+++............          ..........|.|... ...+...|+|.+.+
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~----------~~gt~~~~s~L~v~~~-~~~~~~~~tC~V~H   69 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKN----------SDGTYFLSSYLTVSAS-TWESGDTYTCQVTH   69 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEEC----------CCCCEEEEEEEEEccc-cCCCCCEEEEEEEE
Confidence            47899999986 44 589999999875433111100000          0001111223555444 45677899999987


Q ss_pred             CC
Q psy14532         97 KQ   98 (258)
Q Consensus        97 ~~   98 (258)
                      ..
T Consensus        70 ~~   71 (75)
T smart00407       70 EG   71 (75)
T ss_pred             cC
Confidence            64

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.14  E-value=3e-05  Score=48.18  Aligned_cols=65  Identities=23%  Similarity=0.286  Sum_probs=42.6

Q ss_pred             ecCCcEEEEeeeCc-ccCc-eEEEEeCCcccCCC---cceEEecCCeEEEE---ecccCCCCcEEEEEEEeCCC
Q psy14532        125 IAGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLN---RRQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       125 ~~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~~~~---~~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..|+.++|.|.+.| +|.. .++|++++..+...   .......++++.+.   .+.. .+...|+|.+.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCCC
Confidence            35788999999988 5544 89999999876543   11122233443332   2333 566699999998753

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.11  E-value=6.6e-05  Score=47.03  Aligned_cols=36  Identities=25%  Similarity=0.595  Sum_probs=28.7

Q ss_pred             CCeEEEEecccCCCCcEEEEEEEeC-CCCCccceEEEEe
Q psy14532        164 NGTLLIENVQKDHDRGVYWCTATNK-QGRSSSQNVHISV  201 (258)
Q Consensus       164 ~~~l~i~~~~~~~~~g~y~C~~~~~-~~~~~~~~~~l~v  201 (258)
                      +.+|.|.+++. +|.|.|+|.+.+. .| ..+..+.|.|
T Consensus        62 daSi~i~nl~~-~D~G~Y~C~v~t~P~g-~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLEL-EDEGVYICEFATFPTG-NRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCcc-ccCEEEEEEEEeCCCC-CeEEEEEEEE
Confidence            36899999997 9999999999994 45 4556666665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.10  E-value=6.7e-06  Score=46.13  Aligned_cols=52  Identities=31%  Similarity=0.548  Sum_probs=36.4

Q ss_pred             cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      ..|.+|+|+|+....   .+.|+++++.+...                          +..+.+.+- . ++.|.|+|.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~--------------------------~~~~~~~~~-~-e~~G~Y~C~~   53 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS--------------------------DEKYLSLNH-F-SSSGYYHCTA   53 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC--------------------------CceEEeecc-C-CCCceEEEEe
Confidence            469999999976532   39999998554432                          224555566 5 7899999998


Q ss_pred             EeC
Q psy14532         95 TNK   97 (258)
Q Consensus        95 ~~~   97 (258)
                      .+.
T Consensus        54 ~~~   56 (65)
T cd07692          54 DNA   56 (65)
T ss_pred             CCC
Confidence            643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.08  E-value=2.3e-05  Score=50.07  Aligned_cols=74  Identities=22%  Similarity=0.350  Sum_probs=48.2

Q ss_pred             CCcEEEEeeeCccc-------CceEEEEeCC--ccc-----------------CCCcceEEec------CCeEEEEeccc
Q psy14532        127 GEPLYLGCPVAGYP-------IESITWQKGV--QQL-----------------PLNRRQKVFP------NGTLLIENVQK  174 (258)
Q Consensus       127 g~~~~l~C~~~~~~-------~~~i~W~~~~--~~~-----------------~~~~~~~~~~------~~~l~i~~~~~  174 (258)
                      |++++|.|...-.|       .+.|.|.+..  ...                 ....+..+..      +.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67899999864221       3689998741  100                 1112333322      34799999998


Q ss_pred             CCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        175 DHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                       +|+|.|.|.+..... .....+.|.|.
T Consensus        82 -~D~G~Y~C~v~~g~~-~~~~~v~L~V~  107 (110)
T cd05902          82 -SDSGTYRCEVVLGIN-DEQDTVPLEVT  107 (110)
T ss_pred             -HHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence             999999999998542 45566666664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.07  E-value=4.8e-05  Score=47.99  Aligned_cols=71  Identities=18%  Similarity=0.366  Sum_probs=44.8

Q ss_pred             cEEEEeeeCccc---CceEEEEeCCcc-----c---C----------CCcceEEe-----cCCeEEEEecccCCCCcEEE
Q psy14532        129 PLYLGCPVAGYP---IESITWQKGVQQ-----L---P----------LNRRQKVF-----PNGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       129 ~~~l~C~~~~~~---~~~i~W~~~~~~-----~---~----------~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~  182 (258)
                      ++.|.|......   ...|.|++....     +   .          ...+..+.     .+.+|.|.+++. +|+|.|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~-sD~GtY~   80 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQ-ADEGKYK   80 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCcc-ccceEEE
Confidence            578999875432   337899884211     0   0          11222332     245799999998 9999999


Q ss_pred             EEEEeC-CCCCccceEEEEe
Q psy14532        183 CTATNK-QGRSSSQNVHISV  201 (258)
Q Consensus       183 C~~~~~-~~~~~~~~~~l~v  201 (258)
                      |.+.+. .| ..+..+.|.|
T Consensus        81 C~v~~~p~g-~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAG-NFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCC-CeeeEEEEEe
Confidence            999974 44 3455566654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.06  E-value=0.0031  Score=49.15  Aligned_cols=166  Identities=18%  Similarity=0.278  Sum_probs=98.7

Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeCC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKGV  150 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~~  150 (258)
                      .|.|..+ +...+|.|+-...+..+. ...+.+.|..+..|.+... ...+..|+...-.|.+.. +|+  ..+.|++|+
T Consensus       183 ~L~I~sl-t~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~-~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQEL-TLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIR-PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEc-ccccceEEEEEEecCCCceeeeeEEEEEEecCCccccc-CCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            4889999 999999999998775542 2335566777766664442 345778999999999866 453  389999999


Q ss_pred             cccCCCc----ceEEecCCeEEEEecccCCC-----CcEEEEEEEeCCCCCc----cceEEEEeecCCccccCCCCCccC
Q psy14532        151 QQLPLNR----RQKVFPNGTLLIENVQKDHD-----RGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPDLH  217 (258)
Q Consensus       151 ~~~~~~~----~~~~~~~~~l~i~~~~~~~~-----~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~  217 (258)
                      ..+....    ......++...++-++.+.+     .-..+|++........    +....-.|+.+|.+.+.     +.
T Consensus       261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----F~  335 (466)
T PHA03270        261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----FG  335 (466)
T ss_pred             ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE-----Ee
Confidence            8774321    12222333223333333122     2378999987653221    22222334444443332     12


Q ss_pred             CCCeeeEEEEeccCCC-CceeEEEECCEecccccc
Q psy14532        218 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSAMG  251 (258)
Q Consensus       218 ~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~~~  251 (258)
                       ++  ...|.+ ..-| ...+.|+-++......+.
T Consensus       336 -dG--~AVCtA-~CVPegV~l~W~V~D~~~pa~~~  366 (466)
T PHA03270        336 -GD--EAVCTA-ACVPEGVTLAWLLGADPAPAEKA  366 (466)
T ss_pred             -CC--EEEEec-cccCCCCEEEEEecCCCCCCccc
Confidence             22  345776 3333 478999987766655543

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.05  E-value=3.5e-05  Score=49.49  Aligned_cols=37  Identities=24%  Similarity=0.506  Sum_probs=29.5

Q ss_pred             CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       164 ~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +.+|.|.+++. .|+|.|.|++.+... .....+.|.|.
T Consensus        78 ~asL~i~~v~~-sD~G~Y~C~V~~g~~-~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRA-SDAGVYRCEVMHGIE-DTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEccccc-ccCEEEEEEEEECCc-ccEEEEEEEEE
Confidence            45799999997 999999999998754 45566667664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=98.01  E-value=9.1e-05  Score=45.86  Aligned_cols=71  Identities=20%  Similarity=0.340  Sum_probs=45.5

Q ss_pred             cCCCcceecCCcEEE-Eeee-CcccCceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        118 PMGNVSAIAGEPLYL-GCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l-~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ......+.+|+.+.+ .|.+ .++|.+.|+|+.+..... ........+++      +.+..... +|+..++|.+.+..
T Consensus         7 ~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~-d~G~~vtC~V~H~a   84 (97)
T cd07704           7 PGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRH-ANGHPLTCVVSHPA   84 (97)
T ss_pred             CCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHH-HCCcEEEEEEeCcc
Confidence            344456678888888 8877 568999999998643322 12222233343      44444443 67779999999875


Q ss_pred             C
Q psy14532        190 G  190 (258)
Q Consensus       190 ~  190 (258)
                      -
T Consensus        85 l   85 (97)
T cd07704          85 L   85 (97)
T ss_pred             c
Confidence            3

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.01  E-value=1.3e-05  Score=49.39  Aligned_cols=63  Identities=24%  Similarity=0.391  Sum_probs=40.1

Q ss_pred             CCcEEEEeeeC-cccCceEEEEeCCcccCCCcc--eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        127 GEPLYLGCPVA-GYPIESITWQKGVQQLPLNRR--QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       127 g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |+.+.+.|.+. ++|.+.|+|+.++..+.....  .....+      ..|.+... ++++...++|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~-~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT-REDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT-GGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC-hHHCCeEEEEEEECCcc
Confidence            67999999874 589999999998877621111  111111      23444433 33567799999998753

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.00  E-value=4.4e-05  Score=47.98  Aligned_cols=67  Identities=21%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             cceecCCcEEEEeeeCc-ccCceEEEEeCCccc-------------CCCcceEEec-----CCeEEEEecccCCCCcEEE
Q psy14532        122 VSAIAGEPLYLGCPVAG-YPIESITWQKGVQQL-------------PLNRRQKVFP-----NGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~-------------~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~  182 (258)
                      +.+.+|++++|.|.... .....+.|++....-             ....+..+..     ...|.|.+++. +|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence            35678999999998765 345678999854211             1112233321     12589999997 9999999


Q ss_pred             EEEEeCC
Q psy14532        183 CTATNKQ  189 (258)
Q Consensus       183 C~~~~~~  189 (258)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.00  E-value=7.1e-05  Score=46.44  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=44.1

Q ss_pred             ceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      |.......++.++|.|.+.++ |. ..|.|+++|..+.............          .........|.+..- ...+
T Consensus         6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~----------~~Ty~~~S~L~v~~~-~w~~   74 (94)
T cd05847           6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEE----------GSTFSTTSELNVTQE-DWKS   74 (94)
T ss_pred             cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECC----------CCcEEEEEEEEEchH-HhcC
Confidence            333333456779999999985 43 5899999998764321111111100          001111223444433 3345


Q ss_pred             ceEEEEEEEeCCc
Q psy14532         87 RGVYWCTATNKQG   99 (258)
Q Consensus        87 ~G~Y~C~~~~~~~   99 (258)
                      ...|+|.+.+...
T Consensus        75 ~~~ytC~V~H~~~   87 (94)
T cd05847          75 GKTYTCKVTHQGT   87 (94)
T ss_pred             CCeEEEEEEECCe
Confidence            6799999988654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.99  E-value=0.0015  Score=51.53  Aligned_cols=164  Identities=18%  Similarity=0.272  Sum_probs=95.8

Q ss_pred             cEEEeecccCCCceEEEEEEEeCCc--ceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKG  149 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~  149 (258)
                      .|.|..+ +..++|.|.-++.+...  ......+.|.++..|.+.. ....+.+|+.-.-.|.+.. +|+  ..+.|++|
T Consensus       290 pL~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV-~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        290 SLHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV-IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ceEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc-cCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4899999 99999999877764332  2233667777777774443 3345789999999999976 453  37999999


Q ss_pred             CcccCCC---cceEEecCCeEEEE-ecccCC------CCcEEEEEEEeCCCCCc----cceEEEEeecCCccccCCCCCc
Q psy14532        150 VQQLPLN---RRQKVFPNGTLLIE-NVQKDH------DRGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPD  215 (258)
Q Consensus       150 ~~~~~~~---~~~~~~~~~~l~i~-~~~~~~------~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~  215 (258)
                      +..+...   .......+|.+... -++..+      ..-..+|.+........    +....-.|+.+|.+.+.     
T Consensus       368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~-----  442 (566)
T PHA03269        368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE-----  442 (566)
T ss_pred             CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE-----
Confidence            8877632   22233344432221 111101      13357999987654222    12222334444443322     


Q ss_pred             cCCCCeeeEEEEeccCCCC--ceeEEEECCEecccc
Q psy14532        216 LHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSA  249 (258)
Q Consensus       216 ~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~l~~~  249 (258)
                      ...|   ...|.+ ...|.  ..+.|+-++....++
T Consensus       443 FedG---~AVCtA-~CVP~~~V~l~WlVgD~p~~~~  474 (566)
T PHA03269        443 IIDG---HIVCLA-KCVPRGVVHFNWWINDIPIEHE  474 (566)
T ss_pred             EeCC---EEEEec-ccccCCCceEEEEecCCCCCCc
Confidence            2223   456777 45543  589998766554443

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.98  E-value=5.7e-05  Score=47.68  Aligned_cols=38  Identities=24%  Similarity=0.508  Sum_probs=27.8

Q ss_pred             eceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAG   45 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~   45 (258)
                      .+....+..|+.++|.|.+.++ |. ..+.|+++|+.+..
T Consensus         7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768           7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            3333344568899999999995 33 37899999988654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.97  E-value=8.9e-05  Score=45.95  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=40.6

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc---ceEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR---RQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++..+|.|.+.| +| ...++|.++|..+..+.   ......++++.+.   .+.. .+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~-~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP-EEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC-CCCCeEEEEEEeCC
Confidence            3566799999998 55 35889999998765431   1222334443332   2333 55669999999864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.97  E-value=0.00013  Score=46.82  Aligned_cols=65  Identities=15%  Similarity=0.309  Sum_probs=40.8

Q ss_pred             ceecCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcceE-EecC-Ce------EEEEecccCCCC-cEEEEEEEeCC
Q psy14532        123 SAIAGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRRQK-VFPN-GT------LLIENVQKDHDR-GVYWCTATNKQ  189 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~~~-~~~~-~~------l~i~~~~~~~~~-g~y~C~~~~~~  189 (258)
                      ....|+.++|.|.+.+ +|. ..++|++||..+....... ...+ ++      |.+... . .|. ..|+|.+.+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~-~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-E-DDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-c-ccccCceEEEEEeCC
Confidence            3456788999999988 564 5999999998875332111 1122 23      333322 2 343 36999999975

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.94  E-value=7e-05  Score=47.92  Aligned_cols=64  Identities=20%  Similarity=0.372  Sum_probs=42.4

Q ss_pred             ceecCCcEEEEeeeCcc-cCceEEEEeCCcc---c--C------C-----------CcceEE--ecC---CeEEEEeccc
Q psy14532        123 SAIAGEPLYLGCPVAGY-PIESITWQKGVQQ---L--P------L-----------NRRQKV--FPN---GTLLIENVQK  174 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~---~--~------~-----------~~~~~~--~~~---~~l~i~~~~~  174 (258)
                      .+.+|++++|.|...+. ....+.|++....   .  .      .           ..+..+  ..+   ..|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998653 3457999984321   0  0      0           112221  111   2489999987


Q ss_pred             CCCCcEEEEEEEe
Q psy14532        175 DHDRGVYWCTATN  187 (258)
Q Consensus       175 ~~~~g~y~C~~~~  187 (258)
                       +|+|.|.|...+
T Consensus        82 -~Dsg~YyCa~~~   93 (107)
T cd07700          82 -EDSGTYFCMTVG   93 (107)
T ss_pred             -HHCEEEEEeEcC
Confidence             999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA02982 hypothetical protein; Provisional

Probab=97.94  E-value=0.0001  Score=51.23  Aligned_cols=136  Identities=13%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             eeeeecCCCceEEEEEEee-cCCCeEEEeeCC-EeCcCCccccceecccceeecccccc---ceeeeeCCcEEEeecccC
Q psy14532         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDG-YPLAGDRHENKNRIGEARVQQLPLNR---RQKVFPNGTLLIENVQKD   84 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~   84 (258)
                      .++.+.+|++|.|.|.... .......|++++ .-+... ......+........++..   .+.....++|+|.++ ..
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~-~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~-~i  109 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQE-ANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKP-DP  109 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEee-ecCcceeccccccCCccceeEEEEEeccceeEEeccC-Cc
Confidence            4567889999999998543 233478899853 222211 0011111111111111111   122223567999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCc
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ  151 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~  151 (258)
                      +..|.|+|.+....+..+.....|.|+.......-    ........+.|-+-....+-..|..+|.
T Consensus       110 ~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W----~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        110 QNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYVV----EEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             ccCCceEEEEecCCCchheeheeeeEecceEEEEE----EecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            99999999999877666544556666433221110    1123456788987544333237876654

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.93  E-value=6e-05  Score=44.73  Aligned_cols=59  Identities=24%  Similarity=0.413  Sum_probs=37.4

Q ss_pred             EEEEeeeCcc-cC-ceEEEEeCCcccCCCcc---eEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        130 LYLGCPVAGY-PI-ESITWQKGVQQLPLNRR---QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       130 ~~l~C~~~~~-~~-~~i~W~~~~~~~~~~~~---~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ++|.|.+.|. |. ..++|++++..+..+..   .....+++      |.+..... ++...|+|.|.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence            6899999884 54 58999999886432211   11123443      33333333 56679999998864

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.92  E-value=1.5e-05  Score=51.75  Aligned_cols=91  Identities=12%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             cCCCceEEEEEEeec-----CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         15 QPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      .=+++|.|.|.+...     +...|.|..+++.+........... ........+  .....++++|.+... +.- .|+
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~-~~~f~sa~i--~~l~kG~aSL~~~~~-~a~-~Gn   99 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKST-SDNFPSAKI--SELLKGNASLKMDKS-DAV-EGN   99 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEE-EGGGTT-BE--GGGGGTB--EEEEHH-HHH--EE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceec-ccCccccch--hHhhCCCEEEEEcch-hcc-ccc
Confidence            448899999998641     2346899998887654322222111 111111112  333445678988887 443 899


Q ss_pred             EEEEEEeCCcceeeceEEEEEe
Q psy14532         90 YWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        90 Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |+|.+........ ..+.|...
T Consensus       100 YTCeVt~~~~ege-~~i~Lk~~  120 (130)
T PF08204_consen  100 YTCEVTELSREGE-TTIELKYR  120 (130)
T ss_dssp             EEEEEEETTEEEE-EEEEEEE-
T ss_pred             eEEEEEecCCCce-EEEEEEEE
Confidence            9999998877666 66666664

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.92  E-value=0.00013  Score=45.01  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             ecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc---eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        125 IAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR---QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       125 ~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~---~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..|...+|.|.+.| +| ...++|.+||..+. +..   .....++++.+.   .+.. .+...|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEECC
Confidence            34666799999998 45 44889999998865 321   222345555443   2344 67779999999863

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.91  E-value=0.00014  Score=45.24  Aligned_cols=63  Identities=21%  Similarity=0.381  Sum_probs=40.4

Q ss_pred             CCcEEEEeeeCcc-cCc-eEEEEeCCcccCCC---cceEEecCCeEEE---EecccCCCCcEEEEEEEeCCC
Q psy14532        127 GEPLYLGCPVAGY-PIE-SITWQKGVQQLPLN---RRQKVFPNGTLLI---ENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       127 g~~~~l~C~~~~~-~~~-~i~W~~~~~~~~~~---~~~~~~~~~~l~i---~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ++.++|.|.+.|. |.. .++|.+++......   .......++++.+   ..+.. .+...|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence            6789999999995 543 89999998532211   1222233444332   23444 677899999998753

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.90  E-value=0.0002  Score=44.52  Aligned_cols=39  Identities=10%  Similarity=0.205  Sum_probs=28.2

Q ss_pred             eceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      .+....+..+..++|.|.+.++ | ...+.|.++|..+..+
T Consensus         7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~   47 (96)
T cd07697           7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILG   47 (96)
T ss_pred             CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCC
Confidence            3443444557789999999995 4 3488999999886544

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.89  E-value=7.2e-05  Score=46.40  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             cCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCc---ceEEecCCeEE------EEecccCCCCcEEEEEEEeCCC
Q psy14532        126 AGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNR---RQKVFPNGTLL------IENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~---~~~~~~~~~l~------i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .++.++|.|.+.| +|. ..++|.+++..+....   ......++++.      +..-.. .+...|+|.|.+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w-~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW-KSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHh-cCCCeEEEEEEECCe
Confidence            4567999999988 554 5899999988753221   11122333333      332222 356799999998653

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.87  E-value=5.4e-05  Score=48.07  Aligned_cols=83  Identities=12%  Similarity=0.070  Sum_probs=46.9

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--C-CeEEEeeCCE-eCcCCccccceecccceeeccccccceee-----eeCCcE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--T-PHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNGTL   76 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~-~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l   76 (258)
                      ..++....+..|+.++|+|.+.++.  . ..+.|+|... .+..-   ...........  ....+...     ....+|
T Consensus         2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c---~~~~~~g~~~~--~~~~r~tcs~~~s~ntv~L   76 (115)
T cd05721           2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVC---AVTGNMSNQLQ--TSLDGFNCDGTLGNEQVNF   76 (115)
T ss_pred             eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEE---EEEeCCCcccc--ccCCCeEEeEeCCCCEEEE
Confidence            3455667789999999999997743  3 3688998521 21110   00000000000  01111111     112358


Q ss_pred             EEeecccCCCceEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~   94 (258)
                      .|.++ +.+|++.|.|..
T Consensus        77 ~l~~L-~a~DTa~Y~Ca~   93 (115)
T cd05721          77 TLQNL-RANQTDIYFCKI   93 (115)
T ss_pred             EEcCC-CHHHCeEEEEEe
Confidence            89999 999999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.85  E-value=0.00027  Score=43.92  Aligned_cols=61  Identities=20%  Similarity=0.383  Sum_probs=39.9

Q ss_pred             CcEEEEeeeCc-ccCceEEEEeCCc----ccC-------------CCcceEEe----cCCeEEEEecccCCCCcEEEEEE
Q psy14532        128 EPLYLGCPVAG-YPIESITWQKGVQ----QLP-------------LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       128 ~~~~l~C~~~~-~~~~~i~W~~~~~----~~~-------------~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      +.++|.|.... .....++|.+...    .+.             ...+....    .+.+|.|.+++. +|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~-~D~G~Y~C~~   79 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATE-EDVGLYCCSL   79 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCc-ccCEEEEEEE
Confidence            36789998753 2345788988422    110             11222222    346899999998 9999999999


Q ss_pred             EeCC
Q psy14532        186 TNKQ  189 (258)
Q Consensus       186 ~~~~  189 (258)
                      ...-
T Consensus        80 ~t~P   83 (96)
T cd05889          80 VTYP   83 (96)
T ss_pred             EeCC
Confidence            7653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.83  E-value=5.7e-05  Score=47.57  Aligned_cols=65  Identities=15%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             eecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc---ceEEecCCeEE------EEecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR---RQKVFPNGTLL------IENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l~------i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ...++.++|.|.+.| +| ...+.|+++|..+....   ......++++.      +..-.. .+...|+|.|.+..
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW-NKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEecC
Confidence            445678999999988 56 55899999998874321   11112244433      332222 45679999999875

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=97.82  E-value=6.5e-05  Score=43.51  Aligned_cols=59  Identities=37%  Similarity=0.571  Sum_probs=42.3

Q ss_pred             EEEEeeeCcccCceEEEEeCCcccCCCc-------ceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        130 LYLGCPVAGYPIESITWQKGVQQLPLNR-------RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +.|.|.+.+.+...+.|++++.......       .........|.|.++.. .|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCc
Confidence            4689999886778999999776543322       11122334688888886 89999999998764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.80  E-value=8.8e-05  Score=48.23  Aligned_cols=69  Identities=25%  Similarity=0.338  Sum_probs=47.1

Q ss_pred             CCCcceecCCcEEEEeeeCcc-cCceEEEEeCC--ccc------------CCCcceEEec-----CCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-PIESITWQKGV--QQL------------PLNRRQKVFP-----NGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~--~~~------------~~~~~~~~~~-----~~~l~i~~~~~~~~~  178 (258)
                      +..+.+..|++++|.|..... ....+.|++..  ..+            ....++.+..     ..+|.|.++.. +|+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~Ds   84 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-EDS   84 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-HHC
Confidence            445678899999999987653 45679999842  111            1123333321     23589999997 999


Q ss_pred             cEEEEEEEeC
Q psy14532        179 GVYWCTATNK  188 (258)
Q Consensus       179 g~y~C~~~~~  188 (258)
                      |.|.|.+...
T Consensus        85 g~Y~C~~~~~   94 (116)
T cd07706          85 AKYFCALSTL   94 (116)
T ss_pred             EEEEEEEECC
Confidence            9999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.80  E-value=9.4e-05  Score=46.70  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=39.9

Q ss_pred             eecCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcc--eE--Ee--cCCeEE------EEecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRR--QK--VF--PNGTLL------IENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~--~~--~~--~~~~l~------i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +..++.++|.|.+.| +|. ..++|.+++..+.....  ..  ..  .++++.      +..-.. .+...|+|.|.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w-~~~~~ytC~V~H~~   91 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDW-NAGDVFTCVVGHEA   91 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHh-cCCCcEEEEeEeCC
Confidence            345678999999998 453 37899999887643211  01  11  134433      322212 35568999999864

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.77  E-value=0.00033  Score=43.55  Aligned_cols=61  Identities=16%  Similarity=0.290  Sum_probs=37.9

Q ss_pred             CcEEEEeee-CcccCceEEEEeCCcccCCCcceEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        128 EPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       128 ~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ....+.|.+ .|+|.+.|+|+++..... ........++      .|.+.... ++++..|+|.+.+...
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~-~d~G~~~tC~v~h~~l   83 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSR-EANGKELTCVVSHPTL   83 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCH-HHCCCEEEEEEeCccc
Confidence            467889998 568999999999721111 1111122333      34454444 3666799999998763

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.77  E-value=0.0036  Score=49.28  Aligned_cols=158  Identities=24%  Similarity=0.371  Sum_probs=92.2

Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeCC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKGV  150 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~~  150 (258)
                      .|.|..+ +...+|.|+-...+..+. .....+.+..+.+|.+.. ....+.+|+.-.-.|.+.. +|+  ..+.|++|+
T Consensus       199 ~LtI~sl-taaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv-~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSV-DWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDL-SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEec-chhhceEEEEEEecCCCceeeeeEEEEEEecCCcccc-cCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            3899999 999999998776554432 222455555566665443 2345779999999999876 453  389999999


Q ss_pred             cccCCCc----ceEEecCCe------EEEEecccCCCCcEEEEEEEeCCCCCc----cceEEEEeecCCccccCCCCCcc
Q psy14532        151 QQLPLNR----RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPDL  216 (258)
Q Consensus       151 ~~~~~~~----~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~  216 (258)
                      ..+....    ......++.      |.+......+..-..+|.+........    +....-.|..+|.+.+.     .
T Consensus       277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~-----F  351 (486)
T PHA03273        277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT-----V  351 (486)
T ss_pred             eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE-----E
Confidence            8876221    122222232      222222111333478999987654221    11222334444443322     1


Q ss_pred             CCCCeeeEEEEeccCCCC--ceeEEEECC
Q psy14532        217 HSGDRAGVQCLVTKGDPP--LTISWLKNG  243 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p~--~~~~W~~~g  243 (258)
                      . ++  ...|.+ ...|.  ..+.|+-++
T Consensus       352 ~-~G--~AVCtA-~CVP~egV~l~W~v~D  376 (486)
T PHA03273        352 E-DG--DAVCTA-KCVPSTGVFVSWSVND  376 (486)
T ss_pred             e-CC--EEEEec-ccccCCCeeEEEEccC
Confidence            2 22  456777 45554  789998755

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.74  E-value=0.00024  Score=44.27  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             eceeeeecCCCceEEEEEEeec--CC-CeEEEeeCCE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN--PT-PHISWKLDGY   41 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~--~~-~~v~W~~~~~   41 (258)
                      .|....+..|+.++|.|.+.++  |. ..|+|.|++.
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            3344446679999999999987  33 3789999864

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.74  E-value=0.00019  Score=40.70  Aligned_cols=49  Identities=27%  Similarity=0.477  Sum_probs=35.4

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      .+.|.|.|...    ..|.|++ |..+...      .+.+|.+.+... +..|.|.|.+++
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~------~~~tlnLGs~~~-DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV------SNTLLDLGSRIN-DPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc------cccEEeccCccc-CCCcceEecCcc
Confidence            45799999762    5699999 4433221      145677777776 899999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.72  E-value=0.00028  Score=43.75  Aligned_cols=61  Identities=16%  Similarity=0.223  Sum_probs=37.8

Q ss_pred             CcEEEEeeeC-cccCceEEEEeCCcccCCCcceEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        128 EPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       128 ~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ....+.|.+. ++|.+.|+|+++..... ........++      .|.+.... ++|+..|+|++.+...
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~-~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTP-EANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCH-HHCCCEEEEEEeCccc
Confidence            4578999875 68999999998732211 1111122233      34444443 3667799999999753

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.70  E-value=0.00026  Score=42.91  Aligned_cols=69  Identities=20%  Similarity=0.347  Sum_probs=42.6

Q ss_pred             cCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE---EeecccCCCceE
Q psy14532         15 QPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL---IENVQKDHDRGV   89 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~~d~G~   89 (258)
                      ..++.++|.|.+.++ |.. .|.|++++..+...........                ..+++..   ...+ ...+...
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~----------------~~dgty~~~s~l~v-~~~~~~~   68 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP----------------NSDGTYSVTSSLTV-TWNSGDE   68 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE----------------ETTSEEEEEEEEEE-ETTTTGG
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc----------------ccccceeeeEEEEe-cCCCCCE
Confidence            348999999999985 433 8999999987765421111110                1222211   2333 3456668


Q ss_pred             EEEEEEeCCcc
Q psy14532         90 YWCTATNKQGR  100 (258)
Q Consensus        90 Y~C~~~~~~~~  100 (258)
                      |+|.+.+....
T Consensus        69 ysC~V~H~~l~   79 (83)
T PF07654_consen   69 YSCRVTHESLP   79 (83)
T ss_dssp             EEEEEEETTSS
T ss_pred             EEEEEEECCCC
Confidence            99999887543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.70  E-value=0.00024  Score=44.30  Aligned_cols=68  Identities=18%  Similarity=0.317  Sum_probs=40.7

Q ss_pred             cceecCCcEEEEeeeCcc--c-CceEEEEeCCccc-CCC-cceEEecCCeEEEEecc---c--CCCCcEEEEEEEeCC
Q psy14532        122 VSAIAGEPLYLGCPVAGY--P-IESITWQKGVQQL-PLN-RRQKVFPNGTLLIENVQ---K--DHDRGVYWCTATNKQ  189 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~--~-~~~i~W~~~~~~~-~~~-~~~~~~~~~~l~i~~~~---~--~~~~g~y~C~~~~~~  189 (258)
                      ..+..|+.++|.|.+.|.  | ...++|.|+++.. ... .......++++.+...-   .  ..+...|+|.|.+..
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            345568899999999887  4 3488999986432 111 11122334444443211   1  134558999999875

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=97.68  E-value=0.00016  Score=39.81  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             CCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      ...|+|.++ ..+|+|.|.|.+.+...... .++.|+|...
T Consensus        17 ~~nLwilpa-~~sDSGiYiC~~rn~t~c~~-~si~l~V~~~   55 (63)
T PHA02633         17 CNNMLILNP-TQSDSGIYMCITKNETYSDM-MKFDLCICLR   55 (63)
T ss_pred             cccEEEecc-ccccCcEEEEEEcCCCeeEE-EEEEEEEeec
Confidence            346999999 99999999999998766665 6777777644

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.66  E-value=0.00042  Score=45.26  Aligned_cols=69  Identities=23%  Similarity=0.271  Sum_probs=45.5

Q ss_pred             CCCcceecCCcEEEEeeeCccc------CceEEEEeCCcc-----cC------------CCcceEEe-----cCCeEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP------IESITWQKGVQQ-----LP------------LNRRQKVF-----PNGTLLIE  170 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~------~~~i~W~~~~~~-----~~------------~~~~~~~~-----~~~~l~i~  170 (258)
                      +..+.+.+|+.|+|.|......      ...+.|++....     +.            ...++.+.     .+..|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            4556788999999999764221      246899985321     00            11222221     12369999


Q ss_pred             ecccCCCCcEEEEEEEeC
Q psy14532        171 NVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       171 ~~~~~~~~g~y~C~~~~~  188 (258)
                      +++. +|+|.|.|.+...
T Consensus        86 ~l~~-~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQP-EDSGKYFFRVELG  102 (119)
T ss_pred             cCCh-hhCeEEEEEEEcC
Confidence            9997 9999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.63  E-value=0.00021  Score=40.51  Aligned_cols=50  Identities=28%  Similarity=0.476  Sum_probs=34.8

Q ss_pred             CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532         16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      ..+.|.|+|..    ...|.|++ |..+...                         .+.+|.+-.. ..+-.|.|.|.+.
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~-------------------------~~~tlnLGs~-~~DPRG~Y~C~~s   53 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEV-------------------------SNTLLDLGSR-INDPRGTYSCKES   53 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Ccccccc-------------------------cccEEeccCc-ccCCCcceEecCc
Confidence            34579999955    25699999 5443322                         1345667777 7778899999886


Q ss_pred             e
Q psy14532         96 N   96 (258)
Q Consensus        96 ~   96 (258)
                      +
T Consensus        54 ~   54 (69)
T cd07691          54 E   54 (69)
T ss_pred             c
Confidence            6

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.62  E-value=0.00061  Score=41.27  Aligned_cols=64  Identities=25%  Similarity=0.464  Sum_probs=42.6

Q ss_pred             cCCcEEEEeeeCc-ccCc-eEEEEeCCcccCCCcceE--E-ecCCeEEEE---ecccCCCCcEEEEEEEeCCC
Q psy14532        126 AGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRRQK--V-FPNGTLLIE---NVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~~~~~~~~--~-~~~~~l~i~---~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .++.++|.|.+.+ +|.. .|.|.+++..+.......  . ..++++.+.   .+.. .+...|+|+|.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTW-NSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEET-TTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecC-CCCCEEEEEEEECCC
Confidence            4789999999988 4533 899999998765433211  1 345543322   2334 667799999998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.59  E-value=0.0003  Score=44.67  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcc----cC------C------------CcceEEec---CCeEEEEecccCCC
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQ----LP------L------------NRRQKVFP---NGTLLIENVQKDHD  177 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~----~~------~------------~~~~~~~~---~~~l~i~~~~~~~~  177 (258)
                      .+..|+.++|.|.........+.|++....    ..      .            ..+.....   ...|.|.++.. +|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK-EN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH-HH
Confidence            357899999999886544457999984321    10      0            01111111   12589999997 99


Q ss_pred             CcEEEEEEEe
Q psy14532        178 RGVYWCTATN  187 (258)
Q Consensus       178 ~g~y~C~~~~  187 (258)
                      +|.|.|.+.+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.59  E-value=0.00095  Score=41.51  Aligned_cols=27  Identities=30%  Similarity=0.636  Sum_probs=22.3

Q ss_pred             CCCceEEEEEEeec-C-CCeEEEeeCCEe
Q psy14532         16 PGPPVSLKCIATGN-P-TPHISWKLDGYP   42 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~   42 (258)
                      .++.++|.|.+.++ | ...|.|+|+|+.
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            56779999999985 3 348999999987

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.59  E-value=0.0014  Score=40.79  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=38.9

Q ss_pred             ceecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc--eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        123 SAIAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR--QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ....++.++|.|.+.+ +| ...++|.++|..+..+..  .....++++.+.   .+...+....|+|.|.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence            3444577999999998 55 348899999987543211  011112233322   1222123446999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.58  E-value=0.00032  Score=45.17  Aligned_cols=66  Identities=21%  Similarity=0.334  Sum_probs=40.9

Q ss_pred             eecCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcc---eEEecC-Ce------EEEEecccCCC-CcEEEEEEEeCCC
Q psy14532        124 AIAGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRR---QKVFPN-GT------LLIENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~---~~~~~~-~~------l~i~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                      +..++.++|.|.+.+ +|. ..++|.+|+..+..+..   .....+ ++      |.+..... .+ ...|+|.|.+...
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w-~~~~~~ytC~V~H~g~   93 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW-FNPRNTFTCIVQFYGG   93 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh-ccCCCeEEEEEEEeCC
Confidence            335678999999988 554 48999999977653321   111222 33      33333222 23 5689999998754

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.54  E-value=0.00052  Score=38.64  Aligned_cols=52  Identities=33%  Similarity=0.603  Sum_probs=35.2

Q ss_pred             eecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      ...|.+|+|+|+...   ..+.|.+++..+...       ...+.+.+-.  ++.|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~-------~~~~~~~~~~--e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGS-------DEKYLSLNHF--SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCC---CCceEEeCCccCCCC-------CceEEeeccC--CCCceEEEEeCC
Confidence            357899999998653   239999988554321       1233444443  689999999864

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.49  E-value=0.00054  Score=44.56  Aligned_cols=68  Identities=21%  Similarity=0.446  Sum_probs=44.6

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEe--c-C--CeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVF--P-N--GTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~--~-~--~~l~i~~~  172 (258)
                      +....+.+|++++|.|...+..  ...+.|++..  +...                 ...++...  . .  ..|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            3456788999999999875432  4569999842  2110                 01122221  1 1  15899999


Q ss_pred             ccCCCCcEEEEEEEe
Q psy14532        173 QKDHDRGVYWCTATN  187 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~  187 (258)
                      .. +|+|.|.|.+..
T Consensus        84 ~~-~Dsa~YyCa~~~   97 (117)
T cd04981          84 TP-EDTAVYYCARGL   97 (117)
T ss_pred             CH-HHCEEEEEEEEc
Confidence            98 999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.41  E-value=0.038  Score=43.16  Aligned_cols=163  Identities=21%  Similarity=0.276  Sum_probs=87.2

Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeCC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKGV  150 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~~  150 (258)
                      .+.|.++ ...|+|.|+-...+.... ...+.+.+.+...|.........+..|+.-.-.|.+.. +|+  ..+.|++||
T Consensus       208 ~v~I~sv-D~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG  286 (490)
T PHA03271        208 GVEIRNV-DYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNG  286 (490)
T ss_pred             eEEEEEe-ecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            5889999 999999765554443322 22255556665443322223345779999999999976 453  379999998


Q ss_pred             cccCCCcce-EE-----ecCC-----eEEEEecccCCCCcEEEEEEEeCCCCCccc---eEEEEeecCCccccCCCCCcc
Q psy14532        151 QQLPLNRRQ-KV-----FPNG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTVPPKIAPFEFQPDL  216 (258)
Q Consensus       151 ~~~~~~~~~-~~-----~~~~-----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~---~~~l~v~~~p~~~~~~~~~~~  216 (258)
                      ..+...... ..     ...+     ++.+.+.. .+..-..+|.+........++   ...-.|+.+|.+.+.     .
T Consensus       287 ~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~-~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv~-----F  360 (490)
T PHA03271        287 NIATPRKDRDGSFWWFESGRGATLVSTITLGNSG-IDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISLA-----F  360 (490)
T ss_pred             ccccCccccceeEEEecCCCceeEEEEEEccccc-CCCCCCceEEEEEccCCceeeeecccCCccccCCeEEEE-----E
Confidence            776432211 10     1111     12222221 133348899998765422211   112223333333222     2


Q ss_pred             CCCCeeeEEEEeccCCC-CceeEEEECCEeccc
Q psy14532        217 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  248 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~  248 (258)
                      ..|   ...|.+ ..-| ...+.|+-++...++
T Consensus       361 edG---~AVCtA-~CVP~gV~lrWlVgD~p~pn  389 (490)
T PHA03271        361 KDG---YAICTI-ECVPSGITVRWLVHDEPQPN  389 (490)
T ss_pred             eCC---EEEEec-cccCCCcEEEEEecCCCCCC
Confidence            223   345666 3333 578999876655433

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.37  E-value=0.0012  Score=41.00  Aligned_cols=62  Identities=16%  Similarity=0.439  Sum_probs=37.7

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc---ceEEecCCeE------EEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR---RQKVFPNGTL------LIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l------~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.+ +| ...++|.+++.. ..+.   ......+++.      .+..... .....|+|.|.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEW-KGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence            4567999999998 45 348899999986 3221   1111124433      3332221 23568999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.36  E-value=0.0025  Score=39.59  Aligned_cols=79  Identities=14%  Similarity=0.260  Sum_probs=43.3

Q ss_pred             eeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      .+.............+.|.+. +.|.+.|.|+++.   ..... ......         .+ ........|.+... ..+
T Consensus         5 ~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~-~~~~~~---------~~-g~~tv~S~l~~~p~-~~d   69 (95)
T cd05719           5 AEAGPVALGGEPVTVATCVSANGKPPATISWETTL---GGEAE-TQSKEN---------PN-GTVTVTSEYRLVPS-REA   69 (95)
T ss_pred             cceeccccCCCccEEEEEECCCCcCCCEEEEEeCC---CCcce-eEeecC---------CC-CCEEEEEEEEEecC-HHH
Confidence            334444445566678899985 5789999999971   11100 000000         00 00111224555444 555


Q ss_pred             CceEEEEEEEeCCcc
Q psy14532         86 DRGVYWCTATNKQGR  100 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~  100 (258)
                      |...|+|.+.+....
T Consensus        70 ~G~~~tC~v~h~~l~   84 (95)
T cd05719          70 NGKELTCVVSHPTLQ   84 (95)
T ss_pred             CCCEEEEEEeCcccC
Confidence            667999999987643

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.32  E-value=0.0011  Score=41.32  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeecC---CCeEEEeeCCEe
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYP   42 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~~~   42 (258)
                      .|.+. ..|....+..+..++|.|.+.++-   ...|.|.++|..
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            35553 334444455788999999999853   348999998764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.31  E-value=0.001  Score=41.47  Aligned_cols=66  Identities=20%  Similarity=0.295  Sum_probs=39.4

Q ss_pred             eecCCcEEEEeeeCc-c-c-CceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        124 AIAGEPLYLGCPVAG-Y-P-IESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~-~-~-~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ...+..++|.|.+.+ + | ...++|.+++..-..........+++      |.+..-.+ ..+..|+|.|.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W-~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEW-NKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHh-cCCCeEEEEEECCCc
Confidence            445788999999988 4 4 35899999886511111111123443      33332222 344579999998753

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.25  E-value=0.00086  Score=40.21  Aligned_cols=56  Identities=23%  Similarity=0.575  Sum_probs=34.3

Q ss_pred             cEEEEeeeCcccC--ceEEEEeCCc--cc----------------CCCcceEEecC-----CeEEEEecccCCCCcEEEE
Q psy14532        129 PLYLGCPVAGYPI--ESITWQKGVQ--QL----------------PLNRRQKVFPN-----GTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       129 ~~~l~C~~~~~~~--~~i~W~~~~~--~~----------------~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C  183 (258)
                      ++.|.|.+.....  ..+.|++...  ..                ....+......     .+|.|.+++. +|+|.|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYC   79 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEE
Confidence            3678998765433  3788987432  10                01122222221     2588999997 99999999


Q ss_pred             EE
Q psy14532        184 TA  185 (258)
Q Consensus       184 ~~  185 (258)
                      .+
T Consensus        80 ~v   81 (81)
T smart00406       80 AV   81 (81)
T ss_pred             cC
Confidence            64

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.20  E-value=0.0034  Score=38.97  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=43.2

Q ss_pred             ceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          9 FIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ...+.......+.+.|.+. +.|...|.|+++......    ......        ..+  .......|.+... ..+|.
T Consensus         7 ~~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~----~~~~~~--------~~g--t~tv~S~l~~~P~-~~d~G   71 (95)
T cd07703           7 AVEVSAGTIPVPVAKCVSANGRPPARISWSSTLGGNAN----TTSKEN--------GDG--TVTVTSEYSLVPT-PEANG   71 (95)
T ss_pred             EEEeecCCCccEEEEEEcCCCCCCcEEEEEcCCCCCee----EEEEeC--------CCC--CEEEEEEEEEecC-HHHCC
Confidence            3344455566789999876 468889999987211100    000000        000  0111224555444 56667


Q ss_pred             eEEEEEEEeCCcce
Q psy14532         88 GVYWCTATNKQGRS  101 (258)
Q Consensus        88 G~Y~C~~~~~~~~~  101 (258)
                      ..|+|++.+.....
T Consensus        72 k~ltC~v~h~al~~   85 (95)
T cd07703          72 KEVTCKVEHETLQE   85 (95)
T ss_pred             CEEEEEEeCcccCC
Confidence            79999999976443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.92  E-value=0.0065  Score=37.57  Aligned_cols=66  Identities=21%  Similarity=0.268  Sum_probs=40.9

Q ss_pred             eecCCcEEEEeeeCc-ccC--ceEEEEeCCcccCCCcceE-------EecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        124 AIAGEPLYLGCPVAG-YPI--ESITWQKGVQQLPLNRRQK-------VFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~~--~~i~W~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..|..+++.|.+.+ +|.  ..+.|+++...+....-..       ......+.+... ++++...|+|.|.-...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence            478999999999975 554  5899998665443221100       011234555554 43444499999986543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.89  E-value=0.0081  Score=37.14  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=25.2

Q ss_pred             eecCCCceEEEEEEee-cCC--CeEEEeeCCEeCcC
Q psy14532         13 TLQPGPPVSLKCIATG-NPT--PHISWKLDGYPLAG   45 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~   45 (258)
                      .+.+|..+++.|.+.+ .|.  ..+.|+++...+..
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~   46 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPS   46 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecc
Confidence            3589999999999975 343  47999997766543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.71  E-value=0.0059  Score=37.99  Aligned_cols=40  Identities=33%  Similarity=0.506  Sum_probs=31.9

Q ss_pred             eeCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        71 ~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .++.+|.|+.+ +..|+|.|.-.+.+..|....+.+.+.|.
T Consensus        68 ~enlaLlIkaA-q~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   68 SENLALLIKAA-QPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTTEEEESS--SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ccCceEEEeec-CcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            45678999999 99999999999999988877677776664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.70  E-value=0.025  Score=43.85  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=75.9

Q ss_pred             ceeeeecCCCceEEEEEEee---cCCCeEEEeeCCEeCcCC---ccccc-eecccceeecccc---ccceeeeeCCcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGD---RHENK-NRIGEARVQQLPL---NRRQKVFPNGTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~l~i   78 (258)
                      .....+..|..|.|.|..+-   .......|+-.+-++..-   ..... ...+...-....+   .+-+......+|+|
T Consensus       271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI  350 (500)
T PHA02914        271 FDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI  350 (500)
T ss_pred             cceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence            35567788999999998764   344578898755433211   00000 0000000000000   01112223568999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcc--cCceEEEEeCCccc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQQL  153 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~~~~  153 (258)
                      .++ ....+|.|.|.+........ ....|.|.......    -...........|-+..+  .++.+.|..+|...
T Consensus       351 kka-~I~N~GCY~~~a~~g~~~~e-c~~Cl~V~d~V~f~----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~  421 (500)
T PHA02914        351 KKA-HINNAGCYEAQAFMGKFKEE-CRHCFKVADHVFFK----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSF  421 (500)
T ss_pred             eeE-EEEcCCceEEEEecCcchhh-hhhheEeccEEEEE----EEeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence            999 99999999999988754333 44445554332110    001112345678887443  45679998877543

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.65  E-value=0.027  Score=44.22  Aligned_cols=81  Identities=14%  Similarity=0.331  Sum_probs=63.0

Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEE
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLK  241 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~  241 (258)
                      ..|.|..+.. ...|.|+=.+.+..+. ...+.+++..+.+|.+.+.+.  .+..|+...-.|.+.+.+|.  ..+.|+.
T Consensus       182 ~~L~I~slt~-aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQELTL-ATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             ceEEEEEccc-ccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            4589999997 8999999887665442 234567777788888776653  36789999999999767775  5799999


Q ss_pred             CCEeccc
Q psy14532        242 NGLPILS  248 (258)
Q Consensus       242 ~g~~l~~  248 (258)
                      ||..+..
T Consensus       259 ng~~V~~  265 (466)
T PHA03270        259 GGDEVFA  265 (466)
T ss_pred             CCccccC
Confidence            9999864

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.62  E-value=0.02  Score=35.61  Aligned_cols=75  Identities=12%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             eeeeecCCCceEE-EEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532         10 IQQTLQPGPPVSL-KCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus        10 ~~~~~~~g~~v~l-~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ....+.+|+.+.+ .|.+. +.|.+.|.|+.+.......    . ...        ..+. .......+.+... +..|.
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~----~-~~~--------~~ng-T~TV~S~~~l~p~-r~d~G   73 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES----H-SQE--------HPNG-TTTVTSEYIWVPS-RHANG   73 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce----e-eec--------CCCC-CEEEEEEEEEEeC-HHHCC
Confidence            3455678999999 99875 4788899999763221100    0 000        0000 1111224555555 66677


Q ss_pred             eEEEEEEEeCCc
Q psy14532         88 GVYWCTATNKQG   99 (258)
Q Consensus        88 G~Y~C~~~~~~~   99 (258)
                      -.++|.+.+...
T Consensus        74 ~~vtC~V~H~al   85 (97)
T cd07704          74 HPLTCVVSHPAL   85 (97)
T ss_pred             cEEEEEEeCccc
Confidence            799999998754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.59  E-value=0.0058  Score=44.58  Aligned_cols=49  Identities=24%  Similarity=0.355  Sum_probs=41.0

Q ss_pred             cCceEEEEe-CCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        140 PIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       140 ~~~~i~W~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..|.+.|.. ++..+.......+...|.|.+.+... .++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~e-smSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQE-SMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeecccc-ccCCceEEEEEEEe
Confidence            368899998 45666666678888999999999986 99999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.58  E-value=0.022  Score=45.31  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=60.9

Q ss_pred             eEEEEecccCCCCcEEEEEEEeCCC--CCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEE
Q psy14532        166 TLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLK  241 (258)
Q Consensus       166 ~l~i~~~~~~~~~g~y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~  241 (258)
                      .|.|.++.. .+.|.|+=.+.+...  ......+.+.+..+|.+.+.+.  .+.+|+...-.|.+...+|.  ..+.|+.
T Consensus       290 pL~I~slta-ATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSLDA-STEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeeccc-ccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            489999997 999999866654332  1234667777788887766543  46889999999999766775  5799999


Q ss_pred             CCEeccc
Q psy14532        242 NGLPILS  248 (258)
Q Consensus       242 ~g~~l~~  248 (258)
                      ||.++..
T Consensus       367 ng~~V~~  373 (566)
T PHA03269        367 NFGNIGK  373 (566)
T ss_pred             CCcccCc
Confidence            9999985

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.53  E-value=0.034  Score=44.06  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=59.4

Q ss_pred             eEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEEC
Q psy14532        166 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKN  242 (258)
Q Consensus       166 ~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~  242 (258)
                      .|.|..+.. ...|.|+=.+.+..+. .....+.+....+|.+.+.+.  .+..|+...-.|.+...+|.  ..+.|+.|
T Consensus       199 ~LtI~slta-aTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        199 PLTIKSVDW-RTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             ceEEEecch-hhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            389999987 9999998665443331 223455555677888776653  46889999999999766775  57999999


Q ss_pred             CEeccc
Q psy14532        243 GLPILS  248 (258)
Q Consensus       243 g~~l~~  248 (258)
                      |.++..
T Consensus       276 g~~V~~  281 (486)
T PHA03273        276 AKEVDF  281 (486)
T ss_pred             Ceeccc
Confidence            999983

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.46  E-value=0.31  Score=38.20  Aligned_cols=118  Identities=17%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             eecCCcEEEEeeeCc---ccCceEEEEeCCcccC-----------------CCcceEE---------ecCCeEEEEeccc
Q psy14532        124 AIAGEPLYLGCPVAG---YPIESITWQKGVQQLP-----------------LNRRQKV---------FPNGTLLIENVQK  174 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~---~~~~~i~W~~~~~~~~-----------------~~~~~~~---------~~~~~l~i~~~~~  174 (258)
                      +..|..+.|.|.+.-   .....+.|.--+-++.                 ....+.+         ..+++|+|.+++.
T Consensus       276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I  355 (500)
T PHA02914        276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI  355 (500)
T ss_pred             eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence            345888899997642   2345788875432211                 1111111         1235799999997


Q ss_pred             CCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCC-CeeeEEEEeccC-CCCceeEEEECCEecccc
Q psy14532        175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSG-DRAGVQCLVTKG-DPPLTISWLKNGLPILSA  249 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-~p~~~~~W~~~g~~l~~~  249 (258)
                       +.+|-|+|++.....+..... -|.|.....      -....+| ......|-+-.. ..++++.|.-+|......
T Consensus       356 -~N~GCY~~~a~~g~~~~ec~~-Cl~V~d~V~------f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~  424 (500)
T PHA02914        356 -NNAGCYEAQAFMGKFKEECRH-CFKVADHVF------FKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE  424 (500)
T ss_pred             -EcCCceEEEEecCcchhhhhh-heEeccEEE------EEEEeccCceEEEEEEEEecccCCceeEEEEccEEecCe
Confidence             999999999997643222221 122211000      0112233 345677988333 345689999888766543

>KOG1480|consensus

Probab=96.40  E-value=0.0017  Score=54.16  Aligned_cols=85  Identities=22%  Similarity=0.375  Sum_probs=59.5

Q ss_pred             eeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ..+.-+.|.++..+.|.|... +.|...+.|++++..+...   ....                ...++.+.+..+ +..
T Consensus       134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd---~n~~----------------~~~d~~li~~~a-rls  193 (909)
T KOG1480|consen  134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD---ANVI----------------RASDHNLIISQA-RLS  193 (909)
T ss_pred             cChhhheecccccccccccCcccchhhhhhccccCCCCCcc---ccch----------------hhhcCCccccch-hhh
Confidence            345556678899999999864 4677789999998766542   1111                123567899999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |.|+|+|++.+..+......+.+.++
T Consensus       194 d~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  194 DSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hcccceeeeehhhccccccceEEEEE
Confidence            99999999998776554344444443

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.38  E-value=0.028  Score=35.94  Aligned_cols=66  Identities=14%  Similarity=0.154  Sum_probs=41.7

Q ss_pred             CCcceecCCcEEEEeeeCccc--C-ceEEEEeCCc-ccC--------------CCcceEEecC-----CeEEEEecccCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--I-ESITWQKGVQ-QLP--------------LNRRQKVFPN-----GTLLIENVQKDH  176 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~-~~i~W~~~~~-~~~--------------~~~~~~~~~~-----~~l~i~~~~~~~  176 (258)
                      ....+..|+.++|.|.+.+..  . -.+.|+|... .+.              ...+.....+     -+|.|.+++. +
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~   84 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-N   84 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-H
Confidence            345577888999999987643  3 4788988422 110              1111111111     1588889987 9


Q ss_pred             CCcEEEEEEE
Q psy14532        177 DRGVYWCTAT  186 (258)
Q Consensus       177 ~~g~y~C~~~  186 (258)
                      |.+.|.|..+
T Consensus        85 DTa~Y~Ca~e   94 (115)
T cd05721          85 QTDIYFCKIE   94 (115)
T ss_pred             HCeEEEEEee
Confidence            9999999764

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=96.34  E-value=0.015  Score=32.26  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       163 ~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      ....|.|-++.. +|+|.|.|.+.|... ....++.|.|....
T Consensus        16 ~~~nLwilpa~~-sDSGiYiC~~rn~t~-c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQ-SDSGIYMCITKNETY-SDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEecccc-ccCcEEEEEEcCCCe-eEEEEEEEEEeecc
Confidence            344688888887 999999999997653 23345666665443

>PHA02982 hypothetical protein; Provisional

Probab=96.28  E-value=0.065  Score=37.83  Aligned_cols=119  Identities=13%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             CcceecCCcEEEEeeeCc-ccCceEEEEeCCcc-cC----------C--------CcceEE---ecCCeEEEEecccCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQ-LP----------L--------NRRQKV---FPNGTLLIENVQKDHD  177 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~-~~----------~--------~~~~~~---~~~~~l~i~~~~~~~~  177 (258)
                      ++....+++|.|.|.... .......|..+... +.          .        ...+..   ...++|+|.++.. +.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence            345667899999998643 33457889774321 11          0        001111   2345799999998 89


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEec
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  246 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l  246 (258)
                      .|.|+|++....+....-..-|.++....+-.     ...-.....++|-+ .+.-..-..|.-+|...
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~-----W~e~nNeT~V~CyV-gS~~~dvp~W~V~GVvt  174 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYV-----VEEHNNETIITCFV-GSKHGDVPRFIVAGIVT  174 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecceEEEE-----EEecCCeEEEEEEE-EeccCCCccEEEeeEEe
Confidence            99999999986643332122233321111000     01123455778887 44333223888776643

>PHA03042 CD47-like protein; Provisional

Probab=96.25  E-value=0.033  Score=40.98  Aligned_cols=71  Identities=14%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             cCCcEEEEeeeCcc-----cCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        126 AGEPLYLGCPVAGY-----PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-----~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      =++++.+.|.+..-     ....+.|..++..+-..+..   ...+|.+...  +.-.|+|+|+|.+...+ ....+.|.
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~--~~l~GNYTCEv~~l~n~-gk~~IeLk  103 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFS--KNLSGNYTCEAINKFNK-IKNTIELQ  103 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEecc--ccCCCceeEEEeecccC-ccEEEEEE
Confidence            35789999998652     34579999988765322211   1234655543  26789999999987653 23445554


Q ss_pred             ee
Q psy14532        201 VT  202 (258)
Q Consensus       201 v~  202 (258)
                      ..
T Consensus       104 ~~  105 (286)
T PHA03042        104 YV  105 (286)
T ss_pred             EE
Confidence            43

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.21  E-value=0.01  Score=43.38  Aligned_cols=49  Identities=29%  Similarity=0.556  Sum_probs=36.3

Q ss_pred             CCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532         30 PTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        30 ~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      ..|.+.|... |..+...   +..                .+..+|.|.+.+. +..++|.|+|.+....
T Consensus        11 iDP~y~W~GP~g~~l~gn---~~~----------------nIT~TG~L~~~~F-~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGN---SYV----------------NITETGKLMFKNF-QESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCC---CeE----------------EEccCceEEeecc-ccccCCceEEEEEEEe
Confidence            4678999975 4444433   222                3346889999999 9999999999998755

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.12  E-value=0.017  Score=37.80  Aligned_cols=74  Identities=14%  Similarity=0.301  Sum_probs=40.1

Q ss_pred             cCCcEEEEeeeCc-----ccCceEEEEeCCcccCC---Ccc-e--------EE----ecCCeEEEEecccCCCCcEEEEE
Q psy14532        126 AGEPLYLGCPVAG-----YPIESITWQKGVQQLPL---NRR-Q--------KV----FPNGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       126 ~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~---~~~-~--------~~----~~~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      =++++.|.|.+..     .+...|.|..++..+-.   ... .        .+    ..+.+|.+....  .-.|+|+|+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~--a~~GnYTCe  103 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD--AVEGNYTCE  103 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH--HH-EEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh--ccccceEEE
Confidence            3588999999865     23457999887765311   000 0        00    122347777654  348999999


Q ss_pred             EEeCCCCCccceEEEEee
Q psy14532        185 ATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       185 ~~~~~~~~~~~~~~l~v~  202 (258)
                      +..... ..+..+.|...
T Consensus       104 Vt~~~~-ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSR-EGETTIELKYR  120 (130)
T ss_dssp             EEETTE-EEEEEEEEEE-
T ss_pred             EEecCC-CceEEEEEEEE
Confidence            988754 33455555543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.11  E-value=0.064  Score=42.01  Aligned_cols=83  Identities=23%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeec-CCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEE
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTV-PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWL  240 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~  240 (258)
                      -.+.|.++.. .++|.|+-...+...+ ...+.+.+.+.. +|.+.+.+.  .+..|+...-.|.+...+|+  ..+.|+
T Consensus       207 m~v~I~svD~-~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf  283 (490)
T PHA03271        207 MGVEIRNVDY-ADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWR  283 (490)
T ss_pred             eeEEEEEeec-ccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            3589999997 8999775444443332 223455555544 555665543  36789999999999766775  579999


Q ss_pred             ECCEeccccc
Q psy14532        241 KNGLPILSAM  250 (258)
Q Consensus       241 ~~g~~l~~~~  250 (258)
                      .||..+....
T Consensus       284 ~nG~~V~~~~  293 (490)
T PHA03271        284 QNGNIATPRK  293 (490)
T ss_pred             eCCccccCcc
Confidence            9999886544

>KOG4597|consensus

Probab=96.08  E-value=0.0092  Score=47.20  Aligned_cols=91  Identities=18%  Similarity=0.114  Sum_probs=62.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC---CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD---GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +..-+....+..|++..++|-+.|.+.+.|+|.+-   ...+...   .....+           +-.......|.|-+.
T Consensus       199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~---~nq~~e-----------~p~vtstcql~ic~e  264 (560)
T KOG4597|consen  199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR---PNQTVE-----------NPVVTSTCQLVICNE  264 (560)
T ss_pred             cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec---CccccC-----------CcceeeeeeEEEcch
Confidence            44456667789999999999999999999999862   2221111   111111           112233456899999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       ...|+|.|+|.+.+..|... ..+.+.+.
T Consensus       265 -wq~~a~w~tCs~rcg~g~~~-rdv~c~s~  292 (560)
T KOG4597|consen  265 -WQADAGWYTCSARCGAGFLR-RDVPCSSV  292 (560)
T ss_pred             -hhcCCCceeeccccccceee-ccceeeee
Confidence             99999999999999888766 55555443

>PHA03042 CD47-like protein; Provisional

Probab=96.08  E-value=0.036  Score=40.78  Aligned_cols=71  Identities=17%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             CCCceEEEEEEeec-----CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         16 PGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      =++++.+.|.+...     ....+.|..+++.+......                      ..++|.+..  ..+-.|+|
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----------------------n~aSL~~~f--~~~l~GNY   85 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----------------------NTSSLKFNF--SKNLSGNY   85 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----------------------cceEEEEec--cccCCCce
Confidence            37899999998642     24479999988766433100                      013455443  34458999


Q ss_pred             EEEEEeCCcceeeceEEEEEe
Q psy14532         91 WCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +|.+.+...... ..+.|+-.
T Consensus        86 TCEv~~l~n~gk-~~IeLk~~  105 (286)
T PHA03042         86 TCEAINKFNKIK-NTIELQYV  105 (286)
T ss_pred             eEEEeecccCcc-EEEEEEEE
Confidence            999987654443 44455544

>TIGR00864 PCC polycystin cation channel protein

Probab=95.33  E-value=3.5  Score=41.23  Aligned_cols=191  Identities=12%  Similarity=0.078  Sum_probs=108.6

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ......+..|+.|.|.-.........+.|..++..-...                         .+.++. .   +-...
T Consensus      1703 ~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~-------------------------s~p~~t-H---tf~~~ 1753 (2740)
T TIGR00864      1703 QASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLET-------------------------SEPFMS-H---SFPSA 1753 (2740)
T ss_pred             eccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCccc-------------------------CCCceE-E---EccCC
Confidence            334455678999999877666667789998754211100                         000110 0   23456


Q ss_pred             eEEEEEEE--eCCcceeeceEEEEEecCCe---eccCC--C-cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce
Q psy14532         88 GVYWCTAT--NKQGRSSSQNVHISVTGAPF---VRPMG--N-VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        88 G~Y~C~~~--~~~~~~~~~~~~l~v~~~~~---~~~~~--~-~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      |.|...+.  |..+... .++.+.|..+..   +....  . ..+..|..+.+.-.+.......+.|..++..-..... 
T Consensus      1754 G~y~VtVta~N~vss~~-~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~- 1831 (2740)
T TIGR00864      1754 GLHLVTMKAFNELGSAN-ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH- 1831 (2740)
T ss_pred             ceEEEEEEEEccccccc-eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce-
Confidence            88877654  5555544 566777765531   11111  1 1345567777766653333446777776543221111 


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEE--EEeCCCCCccceEEEEeecCCc-cccCCCCCccCCCCeeeEEEEeccCCCCce
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCT--ATNKQGRSSSQNVHISVTVPPK-IAPFEFQPDLHSGDRAGVQCLVTKGDPPLT  236 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~--~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  236 (258)
                             ..   ... .+.|.|+-.  |.|..+ ....+..+.|+.+.. +........+..|+.++|.+.+. ..+...
T Consensus      1832 -------v~---~Tf-~~aG~ytV~L~AsN~vs-~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~-~GS~Vt 1898 (2740)
T TIGR00864      1832 -------AC---MTF-PDAGTFAIRLNASNAVS-GKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLA-AGSAVN 1898 (2740)
T ss_pred             -------eE---Eec-CCCeEEEEEEEEEcccC-cceeeeeEEEEEecceEEEecccccccCCCEEEEEEEec-CCCceE
Confidence                   11   234 678888654  556654 334555667776653 33334445677899999999995 444789


Q ss_pred             eEEEEC
Q psy14532        237 ISWLKN  242 (258)
Q Consensus       237 ~~W~~~  242 (258)
                      +.|.++
T Consensus      1899 f~w~fG 1904 (2740)
T TIGR00864      1899 FRLQIG 1904 (2740)
T ss_pred             EEEEeC
Confidence            999875

Note: this model has been restricted to the amino half because for technical reasons.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=95.23  E-value=0.23  Score=38.32  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=17.5

Q ss_pred             ceEEEEEEeec-C-CCeEEEeeC
Q psy14532         19 PVSLKCIATGN-P-TPHISWKLD   39 (258)
Q Consensus        19 ~v~l~C~~~~~-~-~~~v~W~~~   39 (258)
                      .++|+|.+.|+ | ...+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            58999999996 3 348899999

>KOG0613|consensus

Probab=95.20  E-value=0.17  Score=45.49  Aligned_cols=167  Identities=15%  Similarity=0.073  Sum_probs=91.9

Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec----------------CC----eeccCCCcceecCCcEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----------------AP----FVRPMGNVSAIAGEPLYLGC  134 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----------------~~----~~~~~~~~~~~~g~~~~l~C  134 (258)
                      +..|.+. ...+.+.|+|...+..+... ..+...+..                ++    .......+....+..+.+.|
T Consensus       279 t~~i~~~-~~~~~~s~t~~~~~~~~q~~-~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~  356 (1205)
T KOG0613|consen  279 TKTIQND-GPEPELSWTVADKRQGCQDR-FKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT  356 (1205)
T ss_pred             ccccccc-CCccccceeeecccCCcccc-eeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence            4566676 77788888888877765544 222111110                00    00112233445567789999


Q ss_pred             eeCcccCc-eEEEEeCCcccCCCcceEE-----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccc
Q psy14532        135 PVAGYPIE-SITWQKGVQQLPLNRRQKV-----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA  208 (258)
Q Consensus       135 ~~~~~~~~-~i~W~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~  208 (258)
                      ...+.+.+ .+.|+++.........-..     ..+..+.+..+.. .+.+.|.|.+.|..+........+.....+...
T Consensus       357 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~  435 (1205)
T KOG0613|consen  357 ALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQ  435 (1205)
T ss_pred             cccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcccccchhhcccccCCCC
Confidence            98887766 4999987655443321111     1233466666766 888999999999887433222222222222111


Q ss_pred             cC----CCCCc--cCCCCeeeEEEEeccCCCC--ceeEEEECCEe
Q psy14532        209 PF----EFQPD--LHSGDRAGVQCLVTKGDPP--LTISWLKNGLP  245 (258)
Q Consensus       209 ~~----~~~~~--~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~  245 (258)
                      ..    ....+  +..-+.+.+.|.+ .+.+.  ..++|++++-.
T Consensus       436 ~~~~kk~~~~t~~L~~~~~i~~~~~~-~s~~~~~~~~tt~~~~~~  479 (1205)
T KOG0613|consen  436 PPKFKKDVSTTDLLTVKDEITVRTPD-SSTSMPMTTVTTIKDGLP  479 (1205)
T ss_pred             CccccccccccccccCCcccccccCC-CCccccceeEeeccCCcc
Confidence            11    11122  3334788888888 56664  45566665443

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=94.70  E-value=0.32  Score=29.83  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=39.2

Q ss_pred             cEEEEeee-CcccCceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        129 PLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       129 ~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      .+.-.|.+ .|+|++.|+|.-+-..-. ........+++      +.+.+... .|....+|.+.+... ....++.|+
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~-~~gk~lTCvV~h~~~-~~~~~~~L~   97 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSRE-AHKQKLTCIVNYRND-RFTDSVTLN   97 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHH-HcCCEeEEEEEeccc-cccccEEec
Confidence            45677884 789999999975321111 11111123332      44445554 788899999998632 333444443

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.18  E-value=0.68  Score=27.68  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=16.6

Q ss_pred             cEEEeecccCCCceEEEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .+...+. ...|+|.+.|.|..
T Consensus        44 ~~~~~~~-~~~d~G~w~C~a~~   64 (80)
T PF05790_consen   44 LVSTFTP-TTEDSGTWVCTASD   64 (80)
T ss_dssp             EEEEESB-TCGGSEEEEEEEEE
T ss_pred             EEEEecC-CCCCCEEEEEEEcC
Confidence            4556777 78899999999953

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=94.07  E-value=0.19  Score=40.26  Aligned_cols=79  Identities=22%  Similarity=0.204  Sum_probs=53.0

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEe---CCcccCCCc-----ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQK---GVQQLPLNR-----RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~---~~~~~~~~~-----~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ...+..+++..++|.+.|.+.+.|+|.+   ++..+....     +.....-..|.|-+... .|+|.|+|.+.+..+. 
T Consensus       205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq-~~a~w~tCs~rcg~g~-  282 (560)
T KOG4597|consen  205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQ-ADAGWYTCSARCGAGF-  282 (560)
T ss_pred             hhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhh-cCCCceeeccccccce-
Confidence            3456678999999999999999999976   232221111     11122334578888876 9999999999998874 


Q ss_pred             ccceEEEEe
Q psy14532        193 SSQNVHISV  201 (258)
Q Consensus       193 ~~~~~~l~v  201 (258)
                      ..+.+.+.+
T Consensus       283 ~~rdv~c~s  291 (560)
T KOG4597|consen  283 LRRDVPCSS  291 (560)
T ss_pred             eeccceeee
Confidence            334444443

>PHA03052 Hypothetical protein; Provisional

Probab=93.76  E-value=0.24  Score=28.05  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CCCccCCCCeeeEEEEeccCCCC--ceeEEEECCEecccc
Q psy14532        212 FQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSA  249 (258)
Q Consensus       212 ~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~l~~~  249 (258)
                      ....+..|..++|.|.+.-+.+.  +.+.|.-|+..+...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~   44 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED   44 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence            34567789999999999756554  578999999999433

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.30  E-value=0.33  Score=37.52  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=17.3

Q ss_pred             cEEEEeeeCc-cc-CceEEEEeC
Q psy14532        129 PLYLGCPVAG-YP-IESITWQKG  149 (258)
Q Consensus       129 ~~~l~C~~~~-~~-~~~i~W~~~  149 (258)
                      .++|.|-+.| +| ...++|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999998 45 348899998

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=93.05  E-value=2.5  Score=30.50  Aligned_cols=141  Identities=19%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcceeeceEE----
Q psy14532         32 PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH----  107 (258)
Q Consensus        32 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~----  107 (258)
                      ..+.|+.+|.++.............        .  ......++|.+.........-..+|.+.-.........+.    
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~--------~--G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~   76 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWS--------D--GLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATAT   76 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEec--------C--CcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccc
Confidence            3789999998877442222211110        0  0122233455533213334557899987544433212222    


Q ss_pred             EEEecCCeeccCCCcceecCCcEEEEeeeCccc--CceEEEEeCCcccCCCcceEE-----ecCCeEEEEeccc-CCCCc
Q psy14532        108 ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP--IESITWQKGVQQLPLNRRQKV-----FPNGTLLIENVQK-DHDRG  179 (258)
Q Consensus       108 l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~-~~~~g  179 (258)
                      -.|+.+|.+.    +....|   ...|.+.-.|  ...+.|.-++...........     ...+...|.+... ....|
T Consensus        77 P~Vy~~P~vs----v~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~  149 (211)
T PF02124_consen   77 PSVYPKPRVS----VRFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDG  149 (211)
T ss_pred             cceecCCEEE----EEecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCC
Confidence            2222333221    223223   4568776655  268999987765422221111     1223455544332 13445


Q ss_pred             --EEEEEEEeCC
Q psy14532        180 --VYWCTATNKQ  189 (258)
Q Consensus       180 --~y~C~~~~~~  189 (258)
                        .|+|.+...-
T Consensus       150 ~~~YtC~l~GYP  161 (211)
T PF02124_consen  150 PVEYTCRLIGYP  161 (211)
T ss_pred             ceeEEEEEeeCC
Confidence              8999998653

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=92.67  E-value=1.5  Score=26.96  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      +...|....+..|+++.+.|...-.....+-|.-.  ...+..+    .                    .=..+.+.++ 
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g----~--------------------~W~~f~LsnV-   60 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSG----P--------------------QWKAFQLSNV-   60 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEE----T--------------------TEEEEEEEEE-
T ss_pred             EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCC----C--------------------cEEEEEEEcc-
Confidence            45678889999999999999875322224555422  1111110    0                    0013567788 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      +. | ....|.+.-. +.....++.++|+.+|
T Consensus        61 ~~-d-s~~~C~~~C~-g~Q~~~~~~ItVY~~P   89 (91)
T PF03921_consen   61 TE-D-SSPLCFFNCS-GEQSSASANITVYKPP   89 (91)
T ss_dssp             -S-C-EEEEEEEEET-TEEEEEEEEEEEEB--
T ss_pred             cc-C-CeEEEEEEcC-CeEEEeEEeeEEeCCC
Confidence            54 4 5667998865 4444488899998776

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.27  E-value=0.38  Score=30.22  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=28.9

Q ss_pred             ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ..+..|.|+.++. .|+|.|.-++.+..|......+.+.|
T Consensus        68 ~enlaLlIkaAq~-qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   68 SENLALLIKAAQP-QDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTTEEEESS-SG-GG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ccCceEEEeecCc-ccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            3566899999998 99999999999988865555555554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03052 Hypothetical protein; Provisional

Probab=91.93  E-value=0.63  Score=26.39  Aligned_cols=35  Identities=11%  Similarity=0.223  Sum_probs=27.2

Q ss_pred             ceeeeecCCCceEEEEEEee---cCCCeEEEeeCCEeC
Q psy14532          9 FIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPL   43 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~   43 (258)
                      |..+.+..|..++|.|.+.-   .....|.|.-++..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            35677889999999999852   235578999888776

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.92  E-value=1.9  Score=26.45  Aligned_cols=39  Identities=26%  Similarity=0.522  Sum_probs=27.9

Q ss_pred             eceeeeecCCCceEEEEEEeec-----CCCeEEEeeCCEeCcCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGD   46 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~   46 (258)
                      .+....+..|++++..|.....     ....+.|..++..++..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~   52 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS   52 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh
Confidence            4566778999999999997532     34579999888766654

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.92  E-value=2.2  Score=25.48  Aligned_cols=52  Identities=13%  Similarity=0.179  Sum_probs=28.6

Q ss_pred             CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        141 IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       141 ~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      .+.+.|+..+....       .....+.+..... .|.|.+.|.|...........+.|.
T Consensus        26 ~~~~~l~~~~~k~~-------~~~~~~~~~~~~~-~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen   26 KPSLFLENPGKKSL-------ETKKLVSTFTPTT-EDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             CEEEEEECSSCEEE-------EESSEEEEESBTC-GGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             ChhheeeccCcccc-------ccceEEEEecCCC-CCCEEEEEEEcCCceEEEEEEEEEE
Confidence            45677766544321       1233445555655 8999999999643332333333343

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=90.80  E-value=2.5  Score=25.80  Aligned_cols=72  Identities=22%  Similarity=0.234  Sum_probs=42.0

Q ss_pred             CCcceeeceeeeecCC----CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKFIQQTLQPG----PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g----~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|+|........+...    +...|.+.+.+. ...+.|+-||..+.....                        ...+.
T Consensus        10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~------------------------~~~~~   64 (89)
T PF06832_consen   10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP------------------------GHQLF   64 (89)
T ss_pred             CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC------------------------CCeEE
Confidence            4555544443333222    245566666655 459999999998833311                        11232


Q ss_pred             EeecccCCCceEEEEEEEeCCccee
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSS  102 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~  102 (258)
                      +    .....|.|+-.+....|...
T Consensus        65 ~----~~~~~G~h~l~vvD~~G~~~   85 (89)
T PF06832_consen   65 W----QPDRPGEHTLTVVDAQGRSA   85 (89)
T ss_pred             e----CCCCCeeEEEEEEcCCCCEE
Confidence            2    34467999998887777554

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.56  E-value=1.8  Score=26.50  Aligned_cols=53  Identities=11%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             CCCcceecCCcEEEEeeeCc-----ccCceEEEEeCCcccCCCcceEEecCC--eEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQLPLNRRQKVFPNG--TLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~~~~~~~~~~~--~l~i~~~  172 (258)
                      ++...+..|+.++..|....     .....|.|..++..++......+ .+.  .+++.+.
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-n~~~SsVT~~~~   69 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-NDTVSSVTLPNL   69 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-STTEEEEEESS-
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-CCeEEEEEEccC
Confidence            44566889999999998742     24568999998886655443333 333  3444443

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>TIGR00864 PCC polycystin cation channel protein

Probab=90.29  E-value=23  Score=36.11  Aligned_cols=202  Identities=12%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ....+..|+.++|.+.+...+...+.|..++. .....                          .+.....   .-...|
T Consensus      1875 s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t--------------------------~~~t~~H---sY~~~G 1925 (2740)
T TIGR00864      1875 SKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ--------------------------PGPRFSH---SFPRVD 1925 (2740)
T ss_pred             ccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec--------------------------CCCeEEe---ecCCCC
Confidence            44467799999999988776777889987642 21110                          0001111   122345


Q ss_pred             EEEEEE--EeCCcceeeceEEEEEecCC-eeccCC--CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec
Q psy14532         89 VYWCTA--TNKQGRSSSQNVHISVTGAP-FVRPMG--NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP  163 (258)
Q Consensus        89 ~Y~C~~--~~~~~~~~~~~~~l~v~~~~-~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~  163 (258)
                      .|...+  .|..+... ..+.+.|..+. .+....  ...+..|+...+.-.+....+..+.|+.+-..+..... .+..
T Consensus      1926 ~Y~VtV~A~N~Vs~~~-a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~-~~~~ 2003 (2740)
T TIGR00864      1926 DHMVNLRAKNEVSCAQ-ANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL-VIHM 2003 (2740)
T ss_pred             cEEEEEEEEeccceee-eeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc-eeec
Confidence            565544  44444433 55555555442 111111  11257788888888875545567999865322221111 1111


Q ss_pred             CCeEEEEecccCCCCcEEEE--EEEeCCCCCccceEEEEeecCCccccC-CCCCccCCCCeeeEEEEeccCCCCceeEEE
Q psy14532        164 NGTLLIENVQKDHDRGVYWC--TATNKQGRSSSQNVHISVTVPPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPLTISWL  240 (258)
Q Consensus       164 ~~~l~i~~~~~~~~~g~y~C--~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  240 (258)
                      ......   .. ...|.|.-  +|.|..+. ......+.|+.+...... ........+..+.|.|.+..+.-...+.|-
T Consensus      2004 G~~vty---~~-~~~G~~~I~v~A~N~l~s-~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WD 2078 (2740)
T TIGR00864      2004 GKDVSY---TA-EAAGLLEIQLGAFNALGA-ENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWD 2078 (2740)
T ss_pred             CCceEE---cc-CCCcEEEEEEEEEcccCc-ccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEE
Confidence            111111   12 46787765  45566653 234445555554432221 123345668899999999433334789998


Q ss_pred             EC-CEecc
Q psy14532        241 KN-GLPIL  247 (258)
Q Consensus       241 ~~-g~~l~  247 (258)
                      ++ |....
T Consensus      2079 FGDGt~~~ 2086 (2740)
T TIGR00864      2079 FGDGSAGQ 2086 (2740)
T ss_pred             ecCCCCcc
Confidence            84 65543

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03112 IL-18 binding protein; Provisional

Probab=87.27  E-value=5.2  Score=26.74  Aligned_cols=28  Identities=18%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             eecCCCceEEEEEEeec-CC-CeEEEeeCC
Q psy14532         13 TLQPGPPVSLKCIATGN-PT-PHISWKLDG   40 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~   40 (258)
                      .-.+|++++|+|.+-+. |. ..+.|..++
T Consensus        34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn   63 (141)
T PHA03112         34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN   63 (141)
T ss_pred             ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence            34679999999998754 43 478999764

>PHA03240 envelope glycoprotein M; Provisional

Probab=87.14  E-value=1.7  Score=31.00  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=21.2

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKL   38 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~   38 (258)
                      ..+.+.+|..|+|.-.--..+.-.+.||+
T Consensus        31 ievt~r~G~nVTLga~~~lhpgq~v~Wy~   59 (258)
T PHA03240         31 EEHTTREGDPLLLGGGHGLGAGQKAHWYK   59 (258)
T ss_pred             eecccccCCceeeCCcccCCCCCEEEEEe
Confidence            45678899999997543324566899998

>PHA03189 UL14 tegument protein; Provisional

Probab=86.43  E-value=7.1  Score=29.77  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=17.5

Q ss_pred             eceeeeecCCCceEEEEEEeec
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN   29 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~   29 (258)
                      .+.++.+-.|+.+++.|.+..+
T Consensus        58 spAP~l~pyGdrvtVpC~fp~H   79 (348)
T PHA03189         58 SPAPLLVPYGDRVTVPCTFPTH   79 (348)
T ss_pred             CCCccccCCCceeeeeeeecCC
Confidence            3566778899999999997653

>KOG0613|consensus

Probab=86.37  E-value=2.2  Score=38.95  Aligned_cols=163  Identities=12%  Similarity=0.037  Sum_probs=89.3

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      ........+..+..+.+.|...+.+.+ .++|+.++......... ...             -........+.|..+ ..
T Consensus       338 ~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~ts~~~~~~~~-~~  402 (1205)
T KOG0613|consen  338 LVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA-LPC-------------PVGTVTSHTYTIKDA-GP  402 (1205)
T ss_pred             ccccceeccccCcceeecccccCCcCCchheeecccccccccccc-ccc-------------ccccccCcchhhhhc-Cc
Confidence            344566778889999999999887766 49999876543322100 000             001112345778888 89


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCC-----eeccCCCcceecC--CcEEEEeeeCcccCc--eEEEEeCCcccCC
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAIAG--EPLYLGCPVAGYPIE--SITWQKGVQQLPL  155 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-----~~~~~~~~~~~~g--~~~~l~C~~~~~~~~--~i~W~~~~~~~~~  155 (258)
                      .+.+.|.|.+.|..+........+.....+     .+..........+  +.+.+.|...+.+.+  .++|++++.....
T Consensus       403 ~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~  482 (1205)
T KOG0613|consen  403 GEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD  482 (1205)
T ss_pred             ccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccc
Confidence            999999999999887655333333322222     1222222233333  778888988776644  4455555443321


Q ss_pred             CcceEE-ecCCeEEEEecccCCCCcEEEEE
Q psy14532        156 NRRQKV-FPNGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       156 ~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      ...... ..-.+|.+.-... .+++.|.-.
T Consensus       483 ~s~~l~r~~~tslLlk~~~~-~~~A~~~~a  511 (1205)
T KOG0613|consen  483 RSVTLTRDVLTSLLLKVASL-SDGAQYTRA  511 (1205)
T ss_pred             ccccccccchhhheeeccCC-Cccchhhhh
Confidence            111110 1112344444443 677776433

>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines

Probab=82.67  E-value=4.4  Score=22.89  Aligned_cols=58  Identities=21%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             EEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcc
Q psy14532         21 SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        21 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~  100 (258)
                      +|+|....  ..-+.||-+|..+-.-                         ...++.+.++     .++|+|+-..... 
T Consensus         2 tltC~s~~--sLPiswYcN~TRLlRl-------------------------t~~Tlt~~~l-----tcNFtCV~qSGh~-   48 (71)
T PF11049_consen    2 TLTCPSNA--SLPISWYCNGTRLLRL-------------------------TQQTLTVVTL-----TCNFTCVGQSGHR-   48 (71)
T ss_pred             ceecCCCC--CCcccEEECCceeeee-------------------------cCCeEeeeee-----eEEeeecCCCCCC-
Confidence            57886543  3468899998765322                         1335666555     5788888654432 


Q ss_pred             eeeceEEEEEecCC
Q psy14532        101 SSSQNVHISVTGAP  114 (258)
Q Consensus       101 ~~~~~~~l~v~~~~  114 (258)
                         .++.++=...|
T Consensus        49 ---hSiWItW~~qP   59 (71)
T PF11049_consen   49 ---HSIWITWYAQP   59 (71)
T ss_pred             ---ceEEEEEcCch
Confidence               45555555444

This domain would appear to be the cytoplasmic region of the protein [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-48
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-07
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-18
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		4e-15
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		7e-09
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-13
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-08
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		7e-12
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		1e-10
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		7e-12
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		1e-10
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		7e-11
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		6e-06
3kld_A	384	Ptprg Cntn4 Complex Length = 384		7e-11
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-10
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-10
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-10
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		3e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-10
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		9e-10
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		5e-09
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		6e-09
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-08
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		5e-04
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-08
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		4e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-08
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-08
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		9e-08
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-07
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-07
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-07
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-07
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-07
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-04
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-04
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		8e-07
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		1e-06
2ocw_A	585	Solution Structure Of Human Secretory Component Len		3e-06
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		3e-06
3s58_A	223	Rage Recognizes Nucleic Acids And Promotes Inflamma		3e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		3e-06
3cjj_A	219	Crystal Structure Of Human Rage Ligand-Binding Doma		4e-06
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		4e-06
3o3u_N	581	Crystal Structure Of Human Receptor For Advanced Gl		4e-06
3oq3_B	329	Structural Basis Of Type-I Interferon Sequestration		6e-06
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-05
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		1e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		1e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-05
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-05
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		8e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		1e-04
1t66_H	220	The Structure Of Fab With Intermediate Affinity For		1e-04
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		1e-04
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		1e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		1e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-04
4fab_H	216	Three-Dimensional Structure Of A Fluorescein-Fab Co		2e-04
1flr_H	219	4-4-20 Fab Fragment Length = 219		2e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		3e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		5e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		3e-04
1rjl_B	221	Structure Of The Complex Between Ospb-Ct And Bacter		3e-04
3bfo_A	91	Crystal Structure Of Ig-Like C2-Type 2 Domain Of Th		3e-04
1l6z_A	216	Crystal Structure Of Murine Ceacam1a[1,4]: A Corona		3e-04
3r4d_A	208	Crystal Structure Of Mouse Coronavirus Receptor-Bin		3e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		4e-04
1ehl_H	219	64m-2 Antibody Fab Complexed With D(5ht)(6-4)t Leng		4e-04
1pz5_B	220	Structural Basis Of Peptide-Carbohydrate Mimicry In		4e-04
1m71_B	220	Crystal Structure Of A Monoclonal Fab Specific For		4e-04
1keg_H	220	Antibody 64m-2 Fab Complexed With Dtt(6-4)tt Length		4e-04
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		4e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		4e-04
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		4e-04
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		6e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		7e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 155/261 (59%), Gaps = 19/261 (7%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +   F ++T++PGP V LKC+A GNPTP ISW+LDG  +A +   ++ ++G    Q +
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN---DRYQVG----QYV 482
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            +N     + N T +  N     D G+Y C A +K G  +  +  ++V G P++R M   
Sbjct: 483 TVNGDVVSYLNITSVHAN-----DGGLYKCIAKSKVG-VAEHSAKLNVYGLPYIRQMEKK 536
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
           + +AGE L + CPVAGYPI+SI W++  + LP+NR+QKVFPNGTL+IENV+++ D+  Y 
Sbjct: 537 AIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596
Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDPPLTISWLK 241
           C A N++G S+  ++ + V V P+I PF F+      G    + C V  GD PL I W  
Sbjct: 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL 656
Query: 242 NGLPILSAMG-----VGRKGN 257
           +G  I   +G     VGR+G+
Sbjct: 657 DGQAISEDLGITTSRVGRRGS 677

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
           V P+G L I  V  +     Y C   ++   + R S+    + +T  P    +  V ++A
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT-EPISSAVPKVVSLA 253
Query: 127 ---------GEPLYLGCPVAGYPIESITWQKGV------QQLPLNRRQKVFPNGTLLIEN 171
                       + L CP  GYP+    W K +      Q + LN R K   +GTL+I++
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV-SGTLIIKD 312
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP--PKIAPFEFQPDLHSGDRAGVQCLVT 229
              + D G Y C   N  G  S + V ++VT P   KI P     D   G  A   C  T
Sbjct: 313 AVVE-DSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQTVDF--GRPAVFTCQYT 368
Query: 230 KGDPPLTISWLKNGLPILSAMGVGR 254
            G+P  T+SW+K+G  I  +  V R
Sbjct: 369 -GNPIKTVSWMKDGKAIGHSESVLR 392

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 8   KFIQQTLQ----PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           +F+ QT       G  V LKC   G+P P I W+             KN   +  +  +P
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ-------------KN---QQDLNPIP 166
Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FV 116
            + R  V P+G L I  +Q   D GVY C+A N     +     + +   P       F+
Sbjct: 167 GDSRVVVLPSGALQISRLQPG-DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFL 225
Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT-LLIENVQKD 175
           +   NV AI G+   L C V+GYP  S TW +G + + L  ++     G+ LLI NV  D
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV-TD 284
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL 235
            D G Y C  T K   + S +  ++V VPP           +       +C V+ G P  
Sbjct: 285 DDSGTYTCVVTYKN-ENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVS-GKPVP 342
Query: 236 TISWLKNG 243
           T++W+KNG
Sbjct: 343 TVNWMKNG 350

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
           +  C     P P ISW              +N+I    + +L  + R  +  NG LL   
Sbjct: 26  TFMCAVESYPQPEISW-------------TRNKI----LIKL-FDTRYSIRENGQLLTIL 67
Query: 81  VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGY 139
             +D D G+Y CTA N  G +      + V   P   RP  NV  I G    L C   G 
Sbjct: 68  SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 140 PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199
           P  S++W KG   L  N R  V  +G+L I NVQK+ D G Y C A N  G + S+ V +
Sbjct: 128 PKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKL 186
Query: 200 SVTV 203
            V V
Sbjct: 187 EVEV 190

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 113 APFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIE 170
           AP +  P+  V A+  E     C V  YP   I+W +    + L + R  +  NG LL  
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTK 230
              +D D G+Y CTA N  G +      + V + PKI        +  G +A + C  T 
Sbjct: 67  LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC-TTM 125
Query: 231 GDPPLTISWLK 241
           G+P  ++SW+K
Sbjct: 126 GNPKPSVSWIK 136

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 22/212 (10%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++       +  G P +L C A G PTP I W   G  +  D+ + ++          
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS---------- 59
Query: 63  PLNRRQKVFPNGTL----LIENVQKDHDRGVYWCTATNKQGRSSSQN--VHISVTGAPFV 116
                + + P+G+L    ++   +   D GVY C A N  G + S +  + +++    F 
Sbjct: 60  ----HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR 115
Query: 117 RPMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
           +   +V    GEP  + C P  G+P  +I+W+K    L     +     G L+I   +K 
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKS 175
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
            D G Y C  TN  G   S+   ++V   P  
Sbjct: 176 -DAGKYVCVGTNMVGERESEVAELTVLERPSF 206

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTL----LIENVQKDHD 177
           GEP  L C   G P  +I W KG +++  ++      + + P+G+L    ++   +   D
Sbjct: 24  GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPP 234
            GVY C A N  G + S +  + V +      F   P    +  G+ A ++C   +G P 
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEVAILRD--DFRQNPSDVMVAVGEPAVMECQPPRGHPE 141
Query: 235 LTISWLKNGLPI 246
            TISW K+G P+
Sbjct: 142 PTISWKKDGSPL 153

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 31/215 (14%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I       ++   P +L C   G P P I W  DG P++ +  ++       RVQ  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH------RVQ-- 61
Query: 63  PLNRRQKVFPNGTLLIENV---QKDHDRGVYWCTATNKQGRSSSQ--NVHISVTGAPFVR 117
                   F +G L        +K+ D G YWC A N+ G++ S+  ++ I+V    F  
Sbjct: 62  --------FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
Query: 118 PMGNVSAIAGEPLYLGC-PVAGYPIESITWQKG--------VQQLPLNRRQKVFPNGTLL 168
              +     GE   L C P  G P  ++ W K               + R ++   G LL
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           I NV+   D G Y C A N  G   S    + V V
Sbjct: 174 ISNVEP-IDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK---VFPNGTLLIENV---QKDHDRGVY 181
           EP  L C V G P  +I W K  + +  N ++     F +G L        +K+ D G Y
Sbjct: 25  EPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTIS 238
           WC A N+ G++ S+  H S+ +      F  +P    +  G+ A ++C   KG P  T+ 
Sbjct: 85  WCVAKNRVGQAVSR--HASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 239 WLKNGLPI--LSAMGVG 253
           W+K+G+P+  L AM  G
Sbjct: 143 WIKDGVPLDDLKAMSFG 159

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 31/215 (14%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I       ++   P +L C   G P P I W  DG P++ +  ++       RVQ  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH------RVQ-- 61
Query: 63  PLNRRQKVFPNGTLLIENV---QKDHDRGVYWCTATNKQGRSSSQ--NVHISVTGAPFVR 117
                   F +G L        +K+ D G YWC A N+ G++ S+  ++ I+V    F  
Sbjct: 62  --------FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
Query: 118 PMGNVSAIAGEPLYLGC-PVAGYPIESITWQKG--------VQQLPLNRRQKVFPNGTLL 168
              +     GE   L C P  G P  ++ W K               + R ++   G LL
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           I NV+   D G Y C A N  G   S    + V V
Sbjct: 174 ISNVEP-IDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK---VFPNGTLLIENV---QKDHDRGVY 181
           EP  L C V G P  +I W K  + +  N ++     F +G L        +K+ D G Y
Sbjct: 25  EPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTIS 238
           WC A N+ G++ S+  H S+ +      F  +P    +  G+ A ++C   KG P  T+ 
Sbjct: 85  WCVAKNRVGQAVSR--HASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 239 WLKNGLPI--LSAMGVG 253
           W+K+G+P+  L AM  G
Sbjct: 143 WIKDGVPLDDLKAMSFG 159

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Query: 15  QPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
           + G  V L+C A GNP P I W + DG P+A     +K+                    N
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS--------------------N 256
Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
           G L I N Q++ D G Y C A N +G++ ++          +V+ + ++     E ++  
Sbjct: 257 GILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE 315
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
           C   G P  +  W K    L L R +     GTL I  V    D G+Y C A NK G
Sbjct: 316 CKANGRPKPTYRWLKNGDPL-LTRDRIQIEQGTLNITIVNLS-DAGMYQCVAENKHG 370

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 33/204 (16%)
Query: 65  NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP---FVRPMG- 120
           NRR      G L I  V+K  D G Y C  TN          +  V G P    +R  G 
Sbjct: 147 NRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTV-------TNHKVLGPPTPLILRNDGV 198
Query: 121 --------------NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT 166
                          V A  G  + L C   G P+ +I W++   +    + ++   NG 
Sbjct: 199 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 258
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGV-- 224
           L I N Q++ D G Y C A N +G++ ++        P  +   +   D+H      V  
Sbjct: 259 LEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWV---QIINDIHVAMEESVFW 314
Query: 225 QCLVTKGDPPLTISWLKNGLPILS 248
           +C    G P  T  WLKNG P+L+
Sbjct: 315 ECKAN-GRPKPTYRWLKNGDPLLT 337

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Query: 15  QPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
           + G  V L+C A GNP P I W + DG P+A     +K+                    N
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS--------------------N 257
Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
           G L I N Q++ D G Y C A N +G++ ++          +V+ + ++     E ++  
Sbjct: 258 GILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE 316
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
           C   G P  +  W K    L L R +     GTL I  V    D G+Y C A NK G
Sbjct: 317 CKANGRPKPTYRWLKNGDPL-LTRDRIQIEQGTLNITIVNLS-DAGMYQCVAENKHG 371

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 33/204 (16%)
Query: 65  NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP---FVRPMG- 120
           NRR      G L I  V+K  D G Y C  TN          +  V G P    +R  G 
Sbjct: 148 NRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTV-------TNHKVLGPPTPLILRNDGV 199
Query: 121 --------------NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT 166
                          V A  G  + L C   G P+ +I W++   +    + ++   NG 
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGV-- 224
           L I N Q++ D G Y C A N +G++ ++        P  +   +   D+H      V  
Sbjct: 260 LEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWV---QIINDIHVAMEESVFW 315
Query: 225 QCLVTKGDPPLTISWLKNGLPILS 248
           +C    G P  T  WLKNG P+L+
Sbjct: 316 ECKAN-GRPKPTYRWLKNGDPLLT 338

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I K   Q ++ G   S  C A G+P P I W+ +G  ++G          ++R   L
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT---------QSRYTVL 59
Query: 63  PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-------TGA 113
                    P G   L IE V+   D   Y C A N  G + S +  +++        G 
Sbjct: 60  EQ-------PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 112
Query: 114 PFVRPMGNVSAI-AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENV 172
           P +        I  G  + + C   G P  +I W K   ++ ++  +    +G L IEN 
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN- 171
Query: 173 QKDHDRGVYWCTATNKQG--RSSSQNVHISV-TVPPKIA 208
            ++ D+G Y C A N  G   S + N+++ V  VPP  +
Sbjct: 172 SREEDQGKYECVAENSMGTEHSKATNLYVKVRRVPPTFS 210

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 27/211 (12%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I K   Q ++ G   S  C A G+P P I W+ +G  ++G          ++R   L
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT---------QSRYTVL 57
Query: 63  PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-------TGA 113
                    P G   L IE V+   D   Y C A N  G + S +  +++        G 
Sbjct: 58  EQ-------PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
Query: 114 PFVRPMGNVSAI-AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENV 172
           P +        I  G  + + C   G P  +I W K   ++ ++  +    +G L IEN 
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN- 169
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
            ++ D+G Y C A N  G   S+  ++ V V
Sbjct: 170 SREEDQGKYECVAENSMGTEHSKATNLYVKV 200

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 100/241 (41%), Gaps = 33/241 (13%)
Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G P++L+C   G P   I+W          +   K R   A   Q   N         +L
Sbjct: 20  GEPITLQCKVDGTPEIRIAWY---------KEHTKLRSAPAYKMQFKNNV-------ASL 63
Query: 77  LIENVQKDH-DRGVYWCTATNKQGRSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYL 132
           +I  V  DH D G Y C A N  G  +S  V +         F R + +V    G P+  
Sbjct: 64  VINKV--DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 133 GCPVAGYPIESITWQKGVQQLPLNRR-QKVFPNGTLLIENVQKDHDR-GVYWCTATNKQG 190
            C + G     ++W K  + L  +   Q  F +    ++ +Q D    G Y C+A+N  G
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 191 R-SSSQNVHISV-TVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
             SSS  + +S   VPP    F+ +P   DL  G+    +C VT G  P+ I+W K+   
Sbjct: 182 TASSSAKLTLSEHEVPPF---FDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNRE 237
Query: 246 I 246
           I
Sbjct: 238 I 238

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL---PLNRRQKVFPNGTLLIEN 171
           F+ P+ +V A  GEP+ L C V G P   I W K   +L   P  + Q      +L+I  
Sbjct: 8   FIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINK 67
Query: 172 VQKDH-DRGVYWCTATNKQGRSSSQNVHI--SVTVPPKIAPFEFQPDLHS--GDRAGVQC 226
           V  DH D G Y C A N  G  +S  V +     +PP  A      D+H   G     +C
Sbjct: 68  V--DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFA--RKLKDVHETLGFPVAFEC 123
Query: 227 LVTKGDPPLTISWLKNG 243
            +  G  PL +SW K+G
Sbjct: 124 RIN-GSEPLQVSWYKDG 139

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 35/250 (14%)
Query: 14  LQPGPPVSLKCIAT-GNPTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           +Q G P++L+C    G P+P I W      P+  D+  ++   G+              F
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL------------YF 175
Query: 72  PNGTLLIENVQKDHD-RGVYWCTATNKQGRSSSQNV----HISVTGAPFVRPMGNVSA-- 124
            N  ++++++Q D+     +  T T +Q    +  V     ++     F+ P G  S+  
Sbjct: 176 SN--VMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233
Query: 125 -IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
            + G  L L C  +G P   I W K    LP ++ +    N  L I NV ++ D G Y+C
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEE-DSGEYFC 292
Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFEF-QPD---LHSGDRAGVQCLVTKGDPPLTISW 239
            A+NK G     ++  +++V  K AP+   +P    L  G+   + C    G+P  T+ W
Sbjct: 293 LASNKMG-----SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRAN-GNPKPTVQW 346
Query: 240 LKNGLPILSA 249
           + NG P+ SA
Sbjct: 347 MVNGEPLQSA 356

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 17  GPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
           G  V+L+C A GNP P I W K+DG                           Q      T
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGSL-----------------------SPQWTTAEPT 257
Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCP 135
           L I +V  + D G Y C A N +GR + Q   I      +++ + +  A  G  L  GC 
Sbjct: 258 LQIPSVSFE-DEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCA 316
Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
            AG P  ++ W +  + L    R +V   G L    +  + D G+Y C A NK G
Sbjct: 317 AAGKPRPTVRWLRNGEPLASQNRVEVLA-GDLRFSKLSLE-DSGMYQCVAENKHG 369

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 20/176 (11%)
Query: 86  DRGVYWCTATNKQGRSS----SQNVHISVTG------APFVRPM--GNVSAIAGEPLYLG 133
           D G Y C AT+    S+    S+   +++        AP ++        A+ G+ + L 
Sbjct: 168 DLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLE 227
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C   G P+  I W+K    L     Q      TL I +V  + D G Y C A N +GR +
Sbjct: 228 CFAFGNPVPRIKWRKVDGSL---SPQWTTAEPTLQIPSVSFE-DEGTYECEAENSKGRDT 283
Query: 194 SQNVHISVTVPPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
            Q   I    P  +    + + D+ S  R G       G P  T+ WL+NG P+ S
Sbjct: 284 VQGRIIVQAQPEWLKVISDTEADIGSNLRWGC---AAAGKPRPTVRWLRNGEPLAS 336

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 42/272 (15%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I +   Q    G   S  C ATG+P P ++W   G            ++   R + +
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKG-----------KKVNSQRFETI 55
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------GA 113
             +          L I+ ++   D  VY C A N  G  +   VH  +T         G 
Sbjct: 56  EFDESA----GAVLRIQPLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGF 108
Query: 114 PFVRPMGNVSAIA-GEPLYLGCPVAGYPIESITWQKGVQQLPL-----NRRQKVFPNGTL 167
           P +     +  +       + C  +G P   ITW K    LP+     N R K   +G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGAL 166
Query: 168 LIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISV-TVPPKIAPFEFQPDLHSGDRAGV 224
            IE+  ++ D+G Y C ATN  G   SS  N+++ V  V P+ +      ++  G    +
Sbjct: 167 QIES-SEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225
Query: 225 QCLVTKGDPPLTISWLKNGLPIL--SAMGVGR 254
            C V  G P   + W++    +     M VGR
Sbjct: 226 TC-VAVGSPMPYVKWMQGAEDLTPEDDMPVGR 256

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 3   PQLIYKFIQQTLQ-PGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQ 60
           P +  KF   T    G  V+L+C A GNP P I W KLDG                    
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG-------------------- 246
Query: 61  QLPLNRRQKVFPNGTLL-IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
               ++  K   +  LL I+NV  + D G Y C A N +GR + Q   I      ++  +
Sbjct: 247 ----SQTSKWLSSEPLLHIQNVDFE-DEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVI 301
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
            +  A  G  L   C  +G P  ++ W +  Q  PL  + ++  +G  L  +     D G
Sbjct: 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ--PLASQNRIEVSGGELRFSKLVLEDSG 359
Query: 180 VYWCTATNKQG 190
           +Y C A NK G
Sbjct: 360 MYQCVAENKHG 370

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 21/189 (11%)
Query: 73  NGTLLIENVQKDHDRGVYWCTATN------KQGRSSSQNVHISVTGAPFVRPM------G 120
            G L I   +   D G Y C AT+      K   S    + ++   A    P        
Sbjct: 157 TGNLYIAKTEAS-DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPA 215
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLL-IENVQKDHDRG 179
           +  A+ G+ + L C   G P+  I W+K    L  ++  K   +  LL I+NV  + D G
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRK----LDGSQTSKWLSSEPLLHIQNVDFE-DEG 270
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
            Y C A N +GR + Q   I +   P         +   G      C V  G P   + W
Sbjct: 271 TYECEAENIKGRDTYQG-RIIIHAQPDWLDVITDTEADIGSDLRWSC-VASGKPRPAVRW 328
Query: 240 LKNGLPILS 248
           L++G P+ S
Sbjct: 329 LRDGQPLAS 337

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 6   IYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLAGDRHENKNRIGEARVQQLP 63
           I +   +T      V+L C A G P P I+WK  +DG+           RI E + Q   
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI-EVKGQH-- 60
Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
                    + +L I++V K  D G Y C A ++ G    +++++ +  AP F+      
Sbjct: 61  --------GSSSLHIKDV-KLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIY 110
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ--KVFPNGTLLIENVQ--KDHDR 178
            +  G P+ + C V   P  SI W++    LP       K +  G  +I  +    D+D 
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170
Query: 179 GVYWCTATNKQGRSSSQNVHISVTVP 204
           G Y CTATN  G    + +     VP
Sbjct: 171 GRYNCTATNHIGTRFQEYILALADVP 196

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 6   IYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLAGDRHENKNRIGEARVQQLP 63
           I +   +T      V+L C A G P P I+WK  +DG+           RI E + Q   
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI-EVKGQH-- 60
Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
                    + +L I++V K  D G Y C A ++ G    +++++ +  AP F+      
Sbjct: 61  --------GSSSLHIKDV-KLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIY 110
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ--KVFPNGTLLIENVQ--KDHDR 178
            +  G P+ + C V   P  SI W++    LP       K +  G  +I  +    D+D 
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170
Query: 179 GVYWCTATNKQGRSSSQNVHISVTVP 204
           G Y CTATN  G    + +     VP
Sbjct: 171 GRYNCTATNHIGTRFQEYILALADVP 196

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 34/200 (17%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S PQ   K    T + G  ++  C A+G+P P ISW  +G  +     EN+  I +    
Sbjct: 6   SMPQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI----EENEKYILKG--- 55
Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
                       N  L + N+  + D G Y C ATNK G    Q   + V   P +  + 
Sbjct: 56  -----------SNTELTVRNI-INSDGGPYVCRATNKAGEDEKQ-AFLQVFVQPHIIQLK 102
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP----------NGTLLIE 170
           N +      + L C   G PI  ITW++ V         K             + +L I+
Sbjct: 103 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 162
Query: 171 NVQKDHDRGVYWCTATNKQG 190
           +V K  D G Y C A ++ G
Sbjct: 163 DV-KLSDSGRYDCEAASRIG 181

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           N +A  GE +   C  +G P  +I+W +  + +  N +  +  + T L      + D G 
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 72
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
           Y C ATNK G    Q   + V V P I   + +    +G    V     +G+P   I+W
Sbjct: 73  YVCRATNKAGEDEKQ-AFLQVFVQPHIIQLKNETTYENGQVTLV--CDAEGEPIPEITW 128

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 29/190 (15%)
Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           +PQ  ++FI   L      SL C+A   PTP   W              K   G  R Q 
Sbjct: 217 NPQDKHQFIDVEL--ASSYSLLCMAQSYPTPSFRWY-------------KFIEGTTRKQA 261
Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG- 120
           + LN R K   +GTL+I++   + D G Y C   N  G  S + V ++VT AP    +  
Sbjct: 262 VVLNDRVKQV-SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETV-LTVT-APLSAKIDP 317
Query: 121 -NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
              +   G P    C   G PI++++W K  + +             L IE+V+K+ D+G
Sbjct: 318 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-------HSESVLRIESVKKE-DKG 369
Query: 180 VYWCTATNKQ 189
           +Y C   N +
Sbjct: 370 MYQCFVRNDR 379

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTG-APFVRPMGN---- 121
           V P+G L I  V  +     Y C   ++   + R S+    + +T     VRP  N    
Sbjct: 162 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDK 221
Query: 122 ---VSAIAGEPLYLGCPVAGYPIESITWQKGV------QQLPLNRRQKVFPNGTLLIENV 172
              +         L C    YP  S  W K +      Q + LN R K   +GTL+I++ 
Sbjct: 222 HQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQV-SGTLIIKDA 280
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVP--PKIAPFEFQPDLHSGDRAGVQCLVTK 230
             + D G Y C   N  G  S + V ++VT P   KI P     D   G  A   C  T 
Sbjct: 281 VVE-DSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQTVDF--GRPAVFTCQYT- 335
Query: 231 GDPPLTISWLKNGLPILSAMGVGR 254
           G+P  T+SW+K+G  I  +  V R
Sbjct: 336 GNPIKTVSWMKDGKAIGHSESVLR 359

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 34/215 (15%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P  +     QT   G   S  C ATG P P I+W   G  ++  R E           
Sbjct: 6   SKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIE-------- 57
Query: 61  QLPLNRRQKVFPNGT---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV------- 110
                     F +G    L I+ ++   D  +Y CTATN  G  ++ +  +SV       
Sbjct: 58  ----------FDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINT-SAKLSVLEEDQLP 106
Query: 111 TGAPFVRPMGNVSAIA-GEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGT 166
           +G P +     +  +  G    + C   G P   I+W K    V     N R K   +G 
Sbjct: 107 SGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGA 166
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
           L IE+  ++ D+G Y C ATN  G   S   ++ V
Sbjct: 167 LQIES-SEESDQGKYECVATNSAGTRYSAPANLYV 200

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 11/150 (7%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGT---LLIE 170
           FV+   + + ++G      C   G P   ITW K  +++   R + + F +G    L I+
Sbjct: 10  FVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQ 69
Query: 171 NVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDL---HSGDRAGV 224
            ++   D  +Y CTATN  G    S+  +V     +P      +  P L     G  A +
Sbjct: 70  PLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATM 129
Query: 225 QCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
            C    G+P   ISW K+ LP+  A   GR
Sbjct: 130 LC-AAGGNPDPEISWFKDFLPVDPAASNGR 158

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 86/220 (39%), Gaps = 40/220 (18%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P  I     QT   G   S  C ATG P P I+W   G  ++  R E           
Sbjct: 5   SKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIE-------- 56
Query: 61  QLPLNRRQKVFPNGT---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT------ 111
                     F +G    L I+ ++   D  +Y CTATN  G  ++ +  +SV       
Sbjct: 57  ----------FDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINT-SAKLSVLEEEQLP 105
Query: 112 -GAPFVR--PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-----NRRQKVFP 163
            G P +   P   V   A     L C   G P   I+W K    LP+     N R K   
Sbjct: 106 PGFPSIDMGPQLKVVEKARTATML-CAAGGNPDPEISWFKDF--LPVDPATSNGRIKQLR 162
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           +G L IE+  ++ D+G Y C ATN  G   S   ++ V V
Sbjct: 163 SGALQIES-SEESDQGKYECVATNSAGTRYSAPANLYVRV 201

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGT---LLIE 170
           F++   + + ++G      C   G P   ITW K  +++   R + + F +G    L I+
Sbjct: 9   FIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQ 68
Query: 171 NVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCL 227
            ++   D  +Y CTATN  G    S+  +V     +PP     +  P L   ++A    +
Sbjct: 69  PLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATM 128
Query: 228 VTK--GDPPLTISWLKNGLPILSAMGVGR 254
           +    G+P   ISW K+ LP+  A   GR
Sbjct: 129 LCAAGGNPDPEISWFKDFLPVDPATSNGR 157

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 29/189 (15%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P L+ K ++  L     +SL C A G P P   W              K   G  R Q +
Sbjct: 215 PALVQKPLE--LMVAHTISLLCPAQGFPAPSFRW-------------YKFIEGTTRKQAV 259
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-- 120
            LN R K   +GTL+I++   + D G Y C   N  G  S + V ++VT AP    +   
Sbjct: 260 VLNDRVKQV-SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETV-LTVT-APLSAKIDPP 315
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
             +   G P    C   G PI++++W K  + +  +          L IE+V+K+ D+G+
Sbjct: 316 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKE-DKGM 367
Query: 181 YWCTATNKQ 189
           Y C   N +
Sbjct: 368 YQCFVRNDR 376

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
           V P+G L I  V  +     Y C   ++   + R S+    + +T  P         A+ 
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT-EPISSSAPRTPALV 218
Query: 127 GEPLYLG--------CPVAGYPIESITWQKGV------QQLPLNRRQKVFPNGTLLIENV 172
            +PL L         CP  G+P  S  W K +      Q + LN R K   +GTL+I++ 
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV-SGTLIIKDA 277
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVP--PKIAPFEFQPDLHSGDRAGVQCLVTK 230
             + D G Y C   N  G  S + V ++VT P   KI P     D   G  A   C  T 
Sbjct: 278 VVE-DSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQTVDF--GRPAVFTCQYT- 332
Query: 231 GDPPLTISWLKNGLPILSAMGVGR 254
           G+P  T+SW+K+G  I  +  V R
Sbjct: 333 GNPIKTVSWMKDGKAIGHSESVLR 356

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 29/189 (15%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P L+ K ++  L     +SL C A G P P   W              K   G  R Q +
Sbjct: 221 PALVQKPLE--LMVAHTISLLCPAQGFPAPSFRW-------------YKFIEGTTRKQAV 265
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-- 120
            LN R K   +GTL+I++   + D G Y C   N  G  S + V ++VT AP    +   
Sbjct: 266 VLNDRVKQV-SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETV-LTVT-APLSAKIDPP 321
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
             +   G P    C   G PI++++W K  + +  +          L IE+V+K+ D+G+
Sbjct: 322 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKE-DKGM 373
Query: 181 YWCTATNKQ 189
           Y C   N +
Sbjct: 374 YQCFVRNDR 382

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
           V P+G L I  V  +     Y C   ++   + R S+    + +T  P         A+ 
Sbjct: 166 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT-EPISSSAPRTPALV 224
Query: 127 GEPLYLG--------CPVAGYPIESITWQKGV------QQLPLNRRQKVFPNGTLLIENV 172
            +PL L         CP  G+P  S  W K +      Q + LN R K   +GTL+I++ 
Sbjct: 225 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV-SGTLIIKDA 283
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVP--PKIAPFEFQPDLHSGDRAGVQCLVTK 230
             + D G Y C   N  G  S + V ++VT P   KI P     D   G  A   C  T 
Sbjct: 284 VVE-DSGKYLCVVNNSVGGESVETV-LTVTAPLSAKIDPPTQTVDF--GRPAVFTCQYT- 338
Query: 231 GDPPLTISWLKNGLPILSAMGVGR 254
           G+P  T+SW+K+G  I  +  V R
Sbjct: 339 GNPIKTVSWMKDGKAIGHSESVLR 362

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 38/218 (17%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P  I K + Q    G   S  C ATG+P P ++W   G            ++   R +
Sbjct: 5   SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKG-----------KKVNSQRFE 53
Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT--------- 111
            +  +          L I+ ++   D  +Y C A N  G  +   VH  +T         
Sbjct: 54  TIEFDESA----GAVLRIQPLRTPRDENIYECVAQNPHGEVT---VHAKLTVLREDQLPP 106
Query: 112 GAPFVRPMGNVSAIA-GEPLYLGCPVAGYPIESITWQKGVQQLPL-----NRRQKVFPNG 165
           G P +     +  +       + C  +G P   ITW K    LP+     N R K   +G
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF--LPVDPSTSNGRIKQLRSG 164
Query: 166 TLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISV 201
            L IE+  ++ D+G Y C A+N  G   SS  N+++ V
Sbjct: 165 GLQIES-SEETDQGKYECVASNSAGVRYSSPANLYVRV 201

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 15/152 (9%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV----FPNGTLLIE 170
           F++   +   ++G      C   G P   +TW K  +++   R + +         L I+
Sbjct: 9   FIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV------PPKIAPFEFQPDLHSGDRAGV 224
            ++   D  +Y C A N  G  +   VH  +TV      PP     +  P L   +R   
Sbjct: 69  PLRTPRDENIYECVAQNPHGEVT---VHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRT 125
Query: 225 QCLV--TKGDPPLTISWLKNGLPILSAMGVGR 254
             ++    G+P   I+W K+ LP+  +   GR
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSTSNGR 157

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
           +L C  TG+P P + W   G  +  D  +        R+Q+      Q       L+I +
Sbjct: 21  TLVCKVTGHPKPIVKWYRQGKEIIADGLK-------YRIQEFKGGYHQ-------LIIAS 66
Query: 81  VQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGA----PFVRPMGNVSAIAGEPLYLGCP 135
           V  D D  VY   ATN+ G  S + ++ + V         +  MG V A+ GE + +  P
Sbjct: 67  VTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 125
Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQG 190
            +G P   ITWQKG   +  N   +V       +L+  N  +  D G Y   A N+ G
Sbjct: 126 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 183

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
           +L C  TG+P P + W   G  +  D  +        R+Q+      Q       L+I +
Sbjct: 23  TLVCKVTGHPKPIVKWYRQGKEIIADGLK-------YRIQEFKGGYHQ-------LIIAS 68
Query: 81  VQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGA----PFVRPMGNVSAIAGEPLYLGCP 135
           V  D D  VY   ATN+ G  S + ++ + V         +  MG V A+ GE + +  P
Sbjct: 69  VTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQG 190
            +G P   ITWQKG   +  N   +V       +L+  N  +  D G Y   A N+ G
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
           +L C  TG+P P + W   G  +  D  +        R+Q+      Q       L+I +
Sbjct: 23  TLVCKVTGHPKPIVKWYRQGKEIIADGLK-------YRIQEFKGGYHQ-------LIIAS 68
Query: 81  VQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGA----PFVRPMGNVSAIAGEPLYLGCP 135
           V  D D  VY   ATN+ G  S + ++ + V         +  MG V A+ GE + +  P
Sbjct: 69  VT-DDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQG 190
            +G P   ITWQKG   +  N   +V       +L+  N  +  D G Y   A N+ G
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 38/216 (17%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   R E       A     
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA----- 61
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------GA 113
                        L I+ ++   D  VY C A N  G  +   VH  +T         G 
Sbjct: 62  ----------GAVLRIQPLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGF 108
Query: 114 PFVRPMGNVSAIA-GEPLYLGCPVAGYPIESITWQKGVQQLPL-----NRRQKVFPNGTL 167
           P +     +  +       + C  +G P   ITW K    LP+     N R K   +G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGAL 166
Query: 168 LIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISV 201
            IE+  ++ D+G Y C ATN  G   SS  N+++ V
Sbjct: 167 QIES-SEETDQGKYECVATNSAGVRYSSPANLYVRV 201

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 15/152 (9%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV----FPNGTLLIE 170
           F++   +   ++G      C   G P   +TW K  +++   R + +         L I+
Sbjct: 9   FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV------PPKIAPFEFQPDLHSGDRAGV 224
            ++   D  VY C A N  G  +   VH  +TV      P      +  P L   +R   
Sbjct: 69  PLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 225 QCLV--TKGDPPLTISWLKNGLPILSAMGVGR 254
             ++    G+P   I+W K+ LP+  +   GR
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 38/216 (17%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   R E       A     
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA----- 61
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------GA 113
                        L I+ ++   D  VY C A N  G  +   VH  +T         G 
Sbjct: 62  ----------GAVLRIQPLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGF 108
Query: 114 PFVRPMGNVSAIA-GEPLYLGCPVAGYPIESITWQKGVQQLPL-----NRRQKVFPNGTL 167
           P +     +  +       + C  +G P   ITW K    LP+     N R K   +G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGAL 166
Query: 168 LIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISV 201
            IE+  ++ D+G Y C ATN  G   SS  N+++ V
Sbjct: 167 QIES-SEETDQGKYECVATNSAGVRYSSPANLYVRV 201

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 15/152 (9%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV----FPNGTLLIE 170
           F++   +   ++G      C   G P   +TW K  +++   R + +         L I+
Sbjct: 9   FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV------PPKIAPFEFQPDLHSGDRAGV 224
            ++   D  VY C A N  G  +   VH  +TV      P      +  P L   +R   
Sbjct: 69  PLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 225 QCLV--TKGDPPLTISWLKNGLPILSAMGVGR 254
             ++    G+P   I+W K+ LP+  +   GR
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV--RPMGNVSAIAGEPL 130
           +G  L+       D GVY C   N  G+    ++ ++V  AP    +P   +    G+ +
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDV 327
Query: 131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
            + C V G P  ++ W    +  PL+  +    +  L+I+ V K+ D+G Y C ATN+ G
Sbjct: 328 TIPCKVTGLPAPNVVWSHNAK--PLSGGRATVTDSGLVIKGV-KNGDKGYYGCRATNEHG 384

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 77/195 (39%), Gaps = 45/195 (23%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNPTP ISW  +G              GE R+  + L  +Q      +L++E
Sbjct: 33  VRFRCPAAGNPTPSISWLKNGREFR----------GEHRIGGIKLRHQQ-----WSLVME 77
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLG 133
           +V    DRG Y C   NK G S  Q   + V      RP+       N +A+ G  +   
Sbjct: 78  SVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 135
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLI--------ENVQKD---------- 175
           C V       I W K V+        KV P+GT  +        E+V+ D          
Sbjct: 136 CKVYSDAQPHIQWLKHVEV----NGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191
Query: 176 HDRGVYWCTATNKQG 190
            D G Y C ATN  G
Sbjct: 192 RDGGEYLCRATNFIG 206

>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component Length = 585

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 61/164 (37%), Gaps = 17/164 (10%)
Query: 73  NGTL-LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGE--- 128
           NGT  +I N     D G YWC         ++  + I + G P ++  GNV+A+ GE   
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKI-IEGEPNLKVPGNVTAVLGETLK 461
Query: 129 -PLYLGCPVAGYPIESITWQK-GVQQLPLNRR--QKVFPNG------TLLIENVQKDHDR 178
            P +  C  + Y      W   G Q LP       K F N         L  N+    D 
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521
Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRA 222
           G YWC    KQG    +   + V V  + A       L   D A
Sbjct: 522 GWYWCGV--KQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAA 563

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 26/193 (13%)
Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           ++ T+  G PV L C   G   P I W  DG  +     +N +++       +P++ +  
Sbjct: 10  VKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVV-----QNLDQL------YIPVSEQHW 58
Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF--VRPMGNVSAIAG 127
           +   G L +++V++  D G YWC   +      SQ V ++V G PF  V P  +++    
Sbjct: 59  I---GFLSLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPK-DLAVPPN 113
Query: 128 EPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
            P  L C   G P   +I W +G  ++         P  +  + NV        + C A 
Sbjct: 114 APFQLSCEAVGPPEPVTIVWWRGTTKIG-------GPAPSPSVLNVTGVTQSTXFSCEAH 166
Query: 187 NKQGRSSSQNVHI 199
           N +G +SS+   +
Sbjct: 167 NLKGLASSRTATV 179

>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory Responses To Dna Length = 223

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQL------------PLNRRQKVFPNGTL 167
           N++A  GEPL L C  A   P + + W+    +             P +   +V PNG+L
Sbjct: 7   NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 66
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-TVPPKIAPFEFQPDLHSGDRAGVQC 226
            +  V    D G++ C A N+ G+ +  N  + V  +P K    +   +L +G    V  
Sbjct: 67  FLPAV-GIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT 125
Query: 227 LVTKGDPPL-TISWLKNGLPIL 247
            V++G  P  T+SW  +G P++
Sbjct: 126 CVSEGSYPAGTLSWHLDGKPLV 147

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----------FVRPMGNV 122
           NG L I NV+   D+G Y C  ++     S  +  I +   P           V    +V
Sbjct: 65  NGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLL-IENVQKDHDRGVY 181
            A+ G+ + L C   G P+  I W+K ++ +P     ++  +G +L I N+Q + D G+Y
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPMP--STAEISTSGAVLKIFNIQLE-DEGIY 180
Query: 182 WCTATNKQGRSSSQ 195
            C A N +G+   Q
Sbjct: 181 ECEAENIRGKDKHQ 194

>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain Length = 219

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQL------------PLNRRQKVFPNGTL 167
           N++A  GEPL L C  A   P + + W+    +             P +   +V PNG+L
Sbjct: 4   NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 63
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-TVPPKIAPFEFQPDLHSGDRAGVQC 226
            +  V    D G++ C A N+ G+ +  N  + V  +P K    +   +L +G    V  
Sbjct: 64  FLPAV-GIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT 122
Query: 227 LVTKGDPPL-TISWLKNGLPIL 247
            V++G  P  T+SW  +G P++
Sbjct: 123 CVSEGSYPAGTLSWHLDGKPLV 144

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 128 EPLYLGCPVAGYPIESITWQKGVQ-----------QLPLNRRQKV-FPNGTLLIENVQKD 175
           E + L C  +G+    + W K VQ           Q+      +V F +  +   +V + 
Sbjct: 17  ESIKLTCTYSGFSSPRVEW-KFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR- 74
Query: 176 HDRGVYWCTATNKQGRSSSQ-NVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
            D G Y C  + + G++  + ++H++V VPP          +  G+RA + C    G PP
Sbjct: 75  KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPP 134
Query: 235 LTISWLKNGLPILSA 249
              SW K+G+ +L+A
Sbjct: 135 SEYSWFKDGISMLTA 149

>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation Endproducts (Rage) Length = 581

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQL------------PLNRRQKVFPNGTL 167
           N++A  GEPL L C  A   P + + W+    +             P +   +V PNG+L
Sbjct: 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 434
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-TVPPKIAPFEFQPDLHSGDRAGVQC 226
            +  V    D G++ C A N+ G+ +  N  + V  +P K    +   +L +G    V  
Sbjct: 435 FLPAVGI-QDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT 493
Query: 227 LVTKGDPPL-TISWLKNGLPIL 247
            V++G  P  T+SW  +G P++
Sbjct: 494 CVSEGSYPAGTLSWHLDGKPLV 515

>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A Poxvirus Decoy Receptor Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIES-------------ITWQK-GVQQLPLNRRQK 160
           F   M +++A+ GEP    CP    PIE              + W+K G  + PLNRR K
Sbjct: 33  FGGTMNDMAAL-GEPFSAKCP----PIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87
Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGD 220
              NG L I N   +     Y CT T K G      V   +  PP   P  ++   H   
Sbjct: 88  ---NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKY 144
Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPIL 247
              + C +        I+W KN   ++
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELI 171

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 113 APFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT--LLI 169
           AP +R  M +V+   GE   L C + G P+  I W +  ++L  +R+ K+  +G    L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQN 196
              ++  D GVY C ATN+ G   + +
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSS 93

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 79/199 (39%), Gaps = 48/199 (24%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNPTP ISW  +G    G+     +RIG  ++      R Q+     +L++E
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRGE-----HRIGGIKL------RHQQ----WSLVME 185
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLG 133
           +V    DRG Y C   NK G S  Q   + V      RP+       N +A+ G  +   
Sbjct: 186 SVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT--------------------LLIENVQ 173
           C V       I W K V+        KV P+GT                    L + NV 
Sbjct: 244 CKVYSDAQPHIQWLKHVEV----NGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299
Query: 174 KDHDRGVYWCTATNKQGRS 192
            + D G Y C A N  G S
Sbjct: 300 FE-DAGEYTCLAGNSIGFS 317

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
           T+Q G    + C  +G PTP +SW+LDG P+   R ++ +++         L R   V  
Sbjct: 20  TVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV---RPDSAHKM---------LVRENGVH- 66
Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSS 102
             +L+IE V    D G+Y C ATN+ G++S
Sbjct: 67  --SLIIEPVTS-RDAGIYTCIATNRAGQNS 93

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQL  K +++T       ++ C A+GNP P I+W  D  P+  D   N  RI + R + +
Sbjct: 115 PQL--KVVERTRT----ATMLCAASGNPDPEITWFKDFLPV--DTSNNNGRIKQLRSESI 166
Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                      G L IE   ++ D+G Y C ATN  G   S   ++ V G
Sbjct: 167 -----------GALQIEQ-SEESDQGKYECVATNSAGTRYSAPANLYVRG 204

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 84/219 (38%), Gaps = 43/219 (19%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+     + QT   G   S  C ATG+P P I W   G  ++  R E             
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIE---------- 56
Query: 63  PLNRRQKVFPNGT---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
                   F +G+   L I+ ++   D  +Y C A+N  G  S  +  ++V     + P 
Sbjct: 57  --------FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV-STRLTVLREDQI-PR 106
Query: 120 GNVSAIAGEPL---------YLGCPVAGYPIESITWQKGVQQLPL-----NRRQKVFPN- 164
           G  +   G  L          + C  +G P   ITW K    LP+     N R K   + 
Sbjct: 107 GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF--LPVDTSNNNGRIKQLRSE 164
Query: 165 --GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
             G L IE   ++ D+G Y C ATN  G   S   ++ V
Sbjct: 165 SIGALQIEQ-SEESDQGKYECVATNSAGTRYSAPANLYV 202

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGT---LLIE 170
           F R   + + ++G      C   G P   I W K  +++   R + + F +G+   L I+
Sbjct: 9   FTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQ 68
Query: 171 NVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCL 227
            ++   D  +Y C A+N  G    S+   V     +P      +  P L   +R     +
Sbjct: 69  PLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATM 128
Query: 228 V--TKGDPPLTISWLKNGLPILSAMGVGR 254
           +    G+P   I+W K+ LP+ ++   GR
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDTSNNNGR 157

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 27/237 (11%)
Query: 14  LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
           L  G      C A G P       +D Y   G++  +  R+    VQ+  +  R  ++ N
Sbjct: 16  LSVGESKFFTCTAIGEPES-----IDWYNPQGEKIISTQRV---VVQKEGVRSRLTIY-N 66
Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA-GEPLYL 132
             +         D G+Y C AT+ +G++    V + +      R + +      GE   +
Sbjct: 67  ANI--------EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 133 GCPVAGYPIESITW---QKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA-TNK 188
            C V+  P  +++W    + V  +  NR   +  N   ++   + D   G+Y C      
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE--GIYRCEGRVEA 176
Query: 189 QGRSSSQNVHISVTVPPKIA--PFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
           +G    +++ + V VPP I+     F      G+     C  + G P   ISW +NG
Sbjct: 177 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNG 232

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 9/180 (5%)
Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAI-AGEPLY 131
           + TL I N   D D G+Y C  T + G  S   V++ +      +          GE   
Sbjct: 61  SSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 132 LGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTA-TNK 188
           + C V      +I W+   + + L +  R  V  N  L I  ++K  D G Y C      
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK-TDEGTYRCEGRILA 178
Query: 189 QGRSSSQNVHISVTVPPKIAPFE--FQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           +G  + +++ + V VPP +   +       + G    + C    G P  T+SW K+G PI
Sbjct: 179 RGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCD-ADGFPEPTMSWTKDGEPI 237

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 66  RRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGN 121
           +  K  PNG  + LI N     D G Y C   N      SQ   + V   P  F R +  
Sbjct: 54  KMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDG 113
Query: 122 VSA--------------IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTL 167
           VS               + G  L L C   G PI    W K   +LPL    K       
Sbjct: 114 VSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN--ELPLTHETKKL----Y 167
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
           ++  V  +H +G YWC   N +    S+ V I +
Sbjct: 168 MVPYVDLEH-QGTYWCHVYNDRDSQDSKKVEIII 200

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTLLIENV----QKDHD 177
           GEP  L C   G P  +I W KG +++  ++      + + P+G+L    +    +   D
Sbjct: 24  GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 178 RGVYWCTATNKQGRSSSQNVHISV 201
            GVY C A N  G + S +  + V
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEV 107

>pdb|1T66|H Chain H, The Structure Of Fab With Intermediate Affinity For Fluorescein. Length = 220

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISW--KLDGYPLAGDRHENKNRIGEAR 58
           +QPG P+ L C+A+G             +P   + W  ++   P   + + + +  G   
Sbjct: 12  VQPGRPMKLSCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFT 71
Query: 59  VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV----TGAP 114
           + +   + +  V+    L + N++ + D G+Y+CT+    G    Q   ++V    T AP
Sbjct: 72  ISRD--DSKSSVY----LQMNNLRAE-DMGIYYCTSYGYHGAYWGQGTLVTVSAAKTTAP 124
Query: 115 FVRPMG-NVSAIAGEPLYLGCPVAGYPIE--SITWQKG 149
            V P+    +A+    + LGC V GY  E  ++TW  G
Sbjct: 125 SVYPLAPGTAALKSSMVTLGCLVKGYFPEPVTVTWNSG 162

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           QTL       LKC ATG+P P ISW  +G+   G       R   A +Q+          
Sbjct: 18  QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG-------RDPRATIQE---------- 60
Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSS 102
             GTL I+N+ +  D G Y C AT+  G +S
Sbjct: 61  -QGTLQIKNL-RISDTGTYTCVATSSSGETS 89

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 92/236 (38%), Gaps = 23/236 (9%)
Query: 14  LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
           L  G  + L C A       I +  + YP    +H++K  +      Q     ++ +   
Sbjct: 106 LSVGEKLVLNCTARTELNVGIDFNWE-YP--SSKHQHKKLVNRDLKTQSGSEMKKFL--- 159
Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN-VHISVTGAPFVRPMGN-----VSAIAG 127
            TL I+ V +  D+G+Y C A++  G  + +N   + V   PFV   G+     V A  G
Sbjct: 160 STLTIDGVTRS-DQGLYTCAASS--GLMTKKNSTFVRVHEKPFV-AFGSGMESLVEATVG 215
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
           E + +     GYP   I W K    +PL     +     L I  V  + D G Y    TN
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYK--NGIPLESNHTIKAGHVLTIMEVS-ERDTGNYTVILTN 272
Query: 188 KQGRSS-SQNVHISVTVPPKIAPFEFQPDLHS---GDRAGVQCLVTKGDPPLTISW 239
              +   S  V + V VPP+I        + S   G    + C V    PP  I W
Sbjct: 273 PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 328

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 90/240 (37%), Gaps = 43/240 (17%)
Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
           +PG  +SL C A  NP    SW +DG                  +QQ      Q++F   
Sbjct: 394 RPGVNLSLSCHAASNPPAQYSWLIDG-----------------NIQQ----HTQELF--- 429
Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEP----- 129
              I N+  + + G+Y C A N     S   V      A   +P  ++S+   +P     
Sbjct: 430 ---ISNI-TEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKP--SISSNNSKPVEDKD 483
Query: 130 -LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
            +   C         + W  G Q LP++ R Q    N TL + NV ++  R  Y C   N
Sbjct: 484 AVAFTCEPEAQNTTYLWWVNG-QSLPVSPRLQLSNGNRTLTLFNVTRNDARA-YVCGIQN 541
Query: 188 KQGRSSSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
               + S  V + V   P   P    PD    SG    + C  +  +P    SW  NG+P
Sbjct: 542 SVSANRSDPVTLDVLYGPD-TPIISPPDSSYLSGANLNLSCH-SASNPSPQYSWRINGIP 599

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 22/188 (11%)
Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q  + G    + C  + +P P +SW           +E    I + R   L  N  Q   
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVSWLY--------HNEEVTTISDNRFAMLANNNLQI-- 61
Query: 72  PNGTLLIENVQKDHDRGVYWCTA-TNKQGRSSSQNVHISVTGAPFV---RPMGNVSAIAG 127
                         D G+Y C      +G    +++ + V   P +   +   N +A  G
Sbjct: 62  --------LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 113
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
           E +   C  +G P  +I+W +  + +  N +  +  + T L      + D G Y C ATN
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 188 KQGRSSSQ 195
           K G    Q
Sbjct: 174 KAGEDEKQ 181

>pdb|4FAB|H Chain H, Three-Dimensional Structure Of A Fluorescein-Fab Complex Crystallized In 2-Methyl-2,4-Pentanediol Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISW--KLDGYPLAGDRHENKNRIGEAR 58
           +QPG P+ L C+A+G             +P   + W  ++   P   + + + +  G   
Sbjct: 12  VQPGRPMKLSCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFT 71
Query: 59  VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT----NKQGRSSSQNVHISVTGAP 114
           + +   + +  V+     L  N  +  D G+Y+CT +    +  G+ +S  V  + T AP
Sbjct: 72  ISR--DDSKSSVY-----LQMNNLRVEDMGIYYCTGSYYGMDYWGQGTSVTVSSAKTTAP 124
Query: 115 FVRPMGNVSA-IAGEPLYLGCPVAGYPIE--SITWQKG 149
            V P+  V     G  + LGC V GY  E  ++TW  G
Sbjct: 125 SVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 162

>pdb|1FLR|H Chain H, 4-4-20 Fab Fragment Length = 219

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISW--KLDGYPLAGDRHENKNRIGEAR 58
           +QPG P+ L C+A+G             +P   + W  ++   P   + + + +  G   
Sbjct: 12  VQPGRPMKLSCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFT 71
Query: 59  VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT----NKQGRSSSQNVHISVTGAP 114
           + +   + +  V+     L  N  +  D G+Y+CT +    +  G+ +S  V  + T AP
Sbjct: 72  ISR--DDSKSSVY-----LQMNNLRVEDMGIYYCTGSYYGMDYWGQGTSVTVSSAKTTAP 124
Query: 115 FVRPMGNVSA-IAGEPLYLGCPVAGYPIE--SITWQKG 149
            V P+  V     G  + LGC V GY  E  ++TW  G
Sbjct: 125 SVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 162

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 27/193 (13%)
Query: 19  PVSLKCIATGNPTPHISWKLDGYPLAGDRHE---NKNRIGEARVQQLPLNRRQKVFPNGT 75
           PV L C  +G  +P + WK D     GD        N+I  +         R    P G 
Sbjct: 21  PVKLSCAYSGFSSPRVEWKFD----QGDTTRLVCYNNKITAS------YEDRVTFLPTG- 69
Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV--SAIAGEPLYLG 133
           +  ++V ++ D G Y C  + + G S  +     +   P  +P  N+  SA  G    L 
Sbjct: 70  ITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128
Query: 134 CPVA-GYPIESITWQKGVQQLPLN-RRQKVFPNGTL--------LIENVQKDHDRGVYWC 183
           C    G P    TW K    +P N +  + F N +         L+ +     D G Y C
Sbjct: 129 CSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 184 TATNKQGRSSSQN 196
            A N  G   + N
Sbjct: 189 EARNGYGTPMTSN 201

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 24/148 (16%)
Query: 119 MGNVSAIAGEP---------LYLGCPVAGYPIESITW---QKGVQQL---------PLNR 157
           MG+V+  + EP         + L C  +G+    + W   Q    +L             
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTVPPKIAPFEFQPDL 216
           R    P G +  ++V ++ D G Y C  + + G S  +  V + V VPP           
Sbjct: 62  RVTFLPTG-ITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSA 119
Query: 217 HSGDRAGVQCLVTKGDPPLTISWLKNGL 244
             G+RA + C    G PP   +W K+G+
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGI 147

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 42/260 (16%)
Query: 23  KCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82
           + ++  NP P   W+      + +  +  N+I   + Q   +  + K     TL+I   Q
Sbjct: 472 QAVSVTNPYPCEEWR------SVEDFQGGNKIEVNKNQFALIEGKNKTV--STLVI---Q 520
Query: 83  KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIE 142
             +   +Y C A NK GR   + +   VT  P +    ++     E + L C       E
Sbjct: 521 AANVSALYKCEAVNKVGRGE-RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFE 579
Query: 143 SITWQK-GVQQLPLNRRQ-----------------KVFPNGT--LLIENVQKD--HDRGV 180
           ++TW K G Q LP++  +                  +F N T  +LI  ++     D+G 
Sbjct: 580 NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAP-----FEFQPDLHSGDRAGVQCLVTKGDPPL 235
           Y C A +++ +     V   +TV  ++AP      E Q     G+   V C  + G+PP 
Sbjct: 640 YVCLAQDRKTKKRHCVVR-QLTVLERVAPTITGNLENQTT-SIGESIEVSCTAS-GNPPP 696
Query: 236 TISWLKNGLPILSAMGVGRK 255
            I W K+   ++   G+  K
Sbjct: 697 QIMWFKDNETLVEDSGIVLK 716

>pdb|1RJL|B Chain B, Structure Of The Complex Between Ospb-Ct And Bactericidal Fab-H6831 Length = 221

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 31/160 (19%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           ++PG  V L C A+G              P   + W  + +P +G+ H N+   G+A + 
Sbjct: 12  VRPGASVKLSCKASGFTFTSSWMHWAKQRPGQGLEWIGEIHPNSGNTHYNEKFKGKATLT 71
Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT--------ATNKQGRSSSQNVHISVTG 112
            +  +         +L  E      D  VY+C         A +  G+ +S  V  + T 
Sbjct: 72  -VDTSSSTAYVDLSSLTSE------DSAVYYCARMRYGDYYAMDNWGQGTSVTVSSAKTT 124
Query: 113 APFVRPMGNVSA-IAGEPLYLGCPVAGYPIESIT--WQKG 149
           AP V P+  V     G  + LGC V GY  ES+T  W  G
Sbjct: 125 APPVYPLAPVCGDTTGSSVTLGCLVKGYFPESVTLLWNSG 164

>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 26/99 (26%)
Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q L PG  + L+C+A G+P PH  W  +  PL    HE K                 K++
Sbjct: 13  QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT---HETK-----------------KLY 52
Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                ++  V  +H +G YWC   N +    S+ V I +
Sbjct: 53  -----MVPYVDLEH-QGTYWCHVYNDRDSQDSKKVEIII 85

>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus Receptor And Cell Adhesion Molecule In The Cea Family Length = 216

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV---TGAPFVRPMGNVS 123
           R+ ++ NG+LL + +    D GVY    T++  R +   V   V      PF++ + N +
Sbjct: 64  REIIYSNGSLLFQMITM-KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQ-VTNTT 121
Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
               + + L C ++     +I W    Q L L  R  +  N ++L  +  K  D G Y C
Sbjct: 122 VKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 184 TATNKQGRSSSQNVHISVTVPP 205
             +N      S ++ + +   P
Sbjct: 181 EISNPVSVRRSNSIKLDIIFDP 202

>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding Domain Complexed With Its Murine Receptor Length = 208

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV---TGAPFVRPMGNVS 123
           R+ ++ NG+LL + +    D GVY    T++  R +   V   V      PF++ + N +
Sbjct: 64  REIIYSNGSLLFQMITM-KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQ-VTNTT 121
Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
               + + L C ++     +I W    Q L L  R  +  N ++L  +  K  D G Y C
Sbjct: 122 VKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 184 TATNKQGRSSSQNVHISVTVPP 205
             +N      S ++ + +   P
Sbjct: 181 EISNPVSVRRSNSIKLDIIFDP 202

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V+L C A G P P ++W  DG P+  + +E K                   +    L+I+
Sbjct: 31  VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFN---------------YDGSELIIK 75
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            V K  D   Y C A NK G   +  +H+ V
Sbjct: 76  KVDK-SDEAEYICIAENKAGEQDA-TIHLKV 104

>pdb|1EHL|H Chain H, 64m-2 Antibody Fab Complexed With D(5ht)(6-4)t Length = 219

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 33/160 (20%)
Query: 15  QPGPPVSLKCIATG-------------NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           +PG  V + C A+G              P   + W    YP   D   N+   G+A++  
Sbjct: 13  RPGASVKMSCKASGYSFTSFWMHWVKQRPGQGLEWIGTIYPGNSDTSYNQKFKGKAKLT- 71
Query: 62  LPLNRRQKVFPNGTLLIE-NVQKDHDRGVYWCT--------ATNKQGRSSSQNVHISVTG 112
                   V    T  +E +   + D  VY+CT        A +  G+ +S  V  + T 
Sbjct: 72  -------AVTSASTAYMEVSSLTNEDSAVYYCTRRSGYKYYALDYWGQGTSVTVSSAKTT 124
Query: 113 APFVRPMGNVSA-IAGEPLYLGCPVAGYPIE--SITWQKG 149
           AP V P+  V     G  + LGC V GY  E  ++TW  G
Sbjct: 125 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 164

>pdb|1PZ5|B Chain B, Structural Basis Of Peptide-Carbohydrate Mimicry In An Antibody Combining Site Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 33/177 (18%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISWKLDGYPLAGDRHENKN---RIGEA 57
           +QPG  + L C+A+G             +P   + W      +A  R ++ N      E+
Sbjct: 12  VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEW------VAEIRLKSNNYATHYAES 65
Query: 58  RVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT------ATNKQGRSSSQNVHISVT 111
              +  ++R      +   L  N  +  D G+Y+CT      A +  G+ +S  V  + T
Sbjct: 66  VKGRFTISRDDS--KSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATT 123
Query: 112 GAPFVRPMG-NVSAIAGEPLYLGCPVAGYPIESIT--WQKGVQQLPLNRRQKVFPNG 165
            AP V P+    S  +G  + LGC V GY  E +T  W  G     +     V  +G
Sbjct: 124 TAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSG 180

>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For Shigella Flexneri Y Lipopolysaccharide Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 33/177 (18%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISWKLDGYPLAGDRHENKN---RIGEA 57
           +QPG  + L C+A+G             +P   + W      +A  R ++ N      E+
Sbjct: 12  VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEW------VAEIRLKSNNYATHYAES 65
Query: 58  RVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT------ATNKQGRSSSQNVHISVT 111
              +  ++R      +   L  N  +  D G+Y+CT      A +  G+ +S  V  + T
Sbjct: 66  VKGRFTISRDDS--KSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATT 123
Query: 112 GAPFVRPMG-NVSAIAGEPLYLGCPVAGYPIESIT--WQKGVQQLPLNRRQKVFPNG 165
            AP V P+    S  +G  + LGC V GY  E +T  W  G     +     V  +G
Sbjct: 124 TAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSG 180

>pdb|1KEG|H Chain H, Antibody 64m-2 Fab Complexed With Dtt(6-4)tt Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 33/160 (20%)
Query: 15  QPGPPVSLKCIATG-------------NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           +PG  V + C A+G              P   + W    YP   D   N+   G+A++  
Sbjct: 13  RPGASVKMSCKASGYSFTSFWMHWVKQRPGQGLEWIGTIYPGNSDTSYNQKFKGKAKLT- 71
Query: 62  LPLNRRQKVFPNGTLLIE-NVQKDHDRGVYWCT--------ATNKQGRSSSQNVHISVTG 112
                   V    T  +E +   + D  VY+CT        A +  G+ +S  V  + T 
Sbjct: 72  -------AVTSASTAYMEVSSLTNEDSAVYYCTRRSGYKYYALDYWGQGTSVTVSSAKTT 124
Query: 113 APFVRPMGNVSA-IAGEPLYLGCPVAGYPIE--SITWQKG 149
           AP V P+  V     G  + LGC V GY  E  ++TW  G
Sbjct: 125 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 164

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQ--KGVQQLPLNRR--QKVFPNGTLLIENVQ 173
            +  V    GE  +  C   G P ESI W   +G + +   R   QK      L I N  
Sbjct: 8   SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 66
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISV----TVPPKIAPFEFQPDLHSGDRAGVQCLVT 229
            + D G+Y C AT+ +G++    V + +    T    ++P EF+     G+ A V C V+
Sbjct: 67  IE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFK----QGEDAEVVCRVS 121
Query: 230 KGDPPLTISWL 240
               P  +SWL
Sbjct: 122 SSPAP-AVSWL 131

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 40/195 (20%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNP P + W  +G        + ++RIG  +V+            + +L++E
Sbjct: 27  VKFRCPAGGNPMPTMRWLKNGKEF-----KQEHRIGGYKVRN----------QHWSLIME 71
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLG 133
           +V    D+G Y C   N+ G S +   H+ V      RP+       N S + G  +   
Sbjct: 72  SVVPS-DKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 129
Query: 134 CPVAGYPIESITWQKGVQQ---------LPLNRRQKVFPNGT-------LLIENVQKDHD 177
           C V       I W K V++         LP  +  K     T       L I NV  + D
Sbjct: 130 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE-D 188
Query: 178 RGVYWCTATNKQGRS 192
            G Y C A N  G S
Sbjct: 189 AGEYTCLAGNSIGIS 203

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 40/195 (20%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNP P + W  +G        + ++RIG  +V+            + +L++E
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEF-----KQEHRIGGYKVRN----------QHWSLIME 73
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLG 133
           +V    D+G Y C   N+ G S +   H+ V      RP+       N S + G  +   
Sbjct: 74  SVVPS-DKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 131
Query: 134 CPVAGYPIESITWQKGVQQ---------LPLNRRQKVFPNGT-------LLIENVQKDHD 177
           C V       I W K V++         LP  +  K     T       L I NV  + D
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE-D 190
Query: 178 RGVYWCTATNKQGRS 192
            G Y C A N  G S
Sbjct: 191 AGEYTCLAGNSIGIS 205

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 40/195 (20%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNP P + W  +     G   + ++RIG  +V+            + +L++E
Sbjct: 28  VKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRN----------QHWSLIME 72
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLG 133
           +V    D+G Y C   N+ G S +   H+ V      RP+       N S + G  +   
Sbjct: 73  SVVPS-DKGNYTCVVENEYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 130
Query: 134 CPVAGYPIESITWQKGVQQ---------LPLNRRQKVFPNGT-------LLIENVQKDHD 177
           C V       I W K V++         LP  +  K     T       L I NV  + D
Sbjct: 131 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE-D 189
Query: 178 RGVYWCTATNKQGRS 192
            G Y C A N  G S
Sbjct: 190 AGEYTCLAGNSIGIS 204

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 40/195 (20%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           V  +C A GNP P + W  +     G   + ++RIG  +V+            + +L++E
Sbjct: 29  VKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRN----------QHWSLIME 73
Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLG 133
           +V    D+G Y C   N+ G S +   H+ V      RP+       N S + G  +   
Sbjct: 74  SVVPS-DKGNYTCVVENEYG-SINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 134 CPVAGYPIESITWQKGVQQ---------LPLNRRQKVFPNGT-------LLIENVQKDHD 177
           C V       I W K V++         LP  +  K     T       L I NV  + D
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE-D 190
Query: 178 RGVYWCTATNKQGRS 192
            G Y C A N  G S
Sbjct: 191 AGEYTCLAGNSIGIS 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-75
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-54
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-39
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-31
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-64
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-61
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-42
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-61
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-50
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-40
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-27
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-58
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-56
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-35
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-55
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-41
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-26
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-53
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-48
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-44
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-53
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-44
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-29
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-52
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-41
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-29
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-52
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-36
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-36
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-36
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-22
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-51
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-27
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-51
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-28
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-51
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-47
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-42
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-27
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-50
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-49
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-45
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-39
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-33
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-49
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	9e-26
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-48
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-40
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-40
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-47
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-33
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-21
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-47
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-24
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-47
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-44
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-35
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-46
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-43
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-42
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-25
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-46
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-31
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-45
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-44
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-44
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-30
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-45
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-30
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-30
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-44
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-43
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-40
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-26
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-12
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-43
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-43
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-32
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-43
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-23
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-43
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-16
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-43
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-26
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-42
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-36
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-42
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-41
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-28
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-41
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-39
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-38
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-34
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-38
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-38
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-31
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-38
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-37
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-26
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-37
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-25
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-37
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-36
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-18
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-35
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-28
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-18
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-35
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-29
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-35
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-26
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-34
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-28
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-34
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-34
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-17
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-33
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-32
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-24
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-30
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-22
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	7e-30
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-27
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-29
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-13
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-29
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-20
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-29
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-12
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-28
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-27
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-24
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-23
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	9e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-27
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-27
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-26
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-26
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	9e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-26
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-20
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-26
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	9e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-26
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-10
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-24
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-24
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	9e-14
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-24
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-19
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-23
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-23
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-23
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-12
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-23
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-23
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-23
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-22
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-21
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-22
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-20
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-22
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-21
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-21
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-10
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-20
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-20
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-11
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-20
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-17
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-16
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-19
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-16
2ens_A	96	Advanced glycosylation END product-specific recept	2e-18
2ens_A	96	Advanced glycosylation END product-specific recept	1e-17
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-18
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-15
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-18
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-15
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-15
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-16
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-16
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-16
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-16
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-16
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-15
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-16
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-13
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-15
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	7e-15
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	7e-15
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-15
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-13
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-15
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-14
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-14
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-14
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-05
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-14
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-14
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	6e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-13
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-12
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	8e-12
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-11
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-07
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	7e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	1e-10
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	5e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-10
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	8e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-09
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	2e-09
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	9e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-09
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	6e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	9e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	8e-09
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	6e-06
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-08
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	9e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-08
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-07
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-08
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	4e-08
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	8e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	2e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-07
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	7e-07
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	9e-07
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-06
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	2e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	5e-06
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	5e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	1e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-05
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	3e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	4e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-05
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	4e-05
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	6e-05
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	9e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	2e-04
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	3e-04
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	3e-04
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	3e-04
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	3e-04
1a64_A	97	CD2; domain swapping, hinge loop, oligomer evoluti	5e-04
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	6e-04
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	6e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	7e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  242 bits (620), Expect = 3e-75
 Identities = 97/254 (38%), Positives = 143/254 (56%), Gaps = 14/254 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +   F ++T++PGP V LKC+A GNPTP ISW+LDG  +A +              Q+
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR-----------YQV 478

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
                        L I +V  + D G+Y C A +K G +   +  ++V G P++R M   
Sbjct: 479 GQYVTVNGDVVSYLNITSVHAN-DGGLYKCIAKSKVGVAEH-SAKLNVYGLPYIRQMEKK 536

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
           + +AGE L + CPVAGYPI+SI W++  + LP+NR+QKVFPNGTL+IENV+++ D+  Y 
Sbjct: 537 AIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLK 241
           C A N++G S+  ++ + V V P+I PF F+      G    + C V  GD PL I W  
Sbjct: 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL 656

Query: 242 NGLPILSAMGVGRK 255
           +G  I   +G+   
Sbjct: 657 DGQAISEDLGITTS 670

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  185 bits (471), Expect = 5e-54
 Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 29/244 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           + +  G  + + C   G P   I W+ D                    + LP+NR+QKVF
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDN-------------------RALPINRKQKVF 576

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG--NVSAIAGEP 129
           PNGTL+IENV+++ D+  Y C A N++G S+  ++ + V   P + P       A  G+ 
Sbjct: 577 PNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQY 636

Query: 130 LYLGCPVAGYPI-ESITWQKGVQQLPLNRR----QKVFPNGTLLIENVQKDHDRGVYWCT 184
           L L C V G  +  +I W    Q +  +      +       L IE V+     G + C 
Sbjct: 637 LTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-HAGNFTCH 695

Query: 185 ATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGL 244
           A N  G        ++V VPP+            G  A V+C    G P   ++W K   
Sbjct: 696 ARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD-GFPKPQVTWKKAVG 753

Query: 245 PILS 248
               
Sbjct: 754 DTPG 757

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  161 bits (409), Expect = 2e-45
 Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 34/247 (13%)

Query: 8   KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
           KF  +T      ++L C A G P P   W          +              + LN R
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA-------------VVLNDR 300

Query: 68  QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIA 126
            K   +GTL+I++   + D G Y C   N  G  S +   ++VT            +   
Sbjct: 301 VKQV-SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDF 357

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
           G P    C   G PI++++W K  + +  +          L IE+V+K+ D+G+Y C   
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKE-DKGMYQCFVR 409

Query: 187 NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLK 241
           N +  + +      + +  +  P   +          G    ++C+   G+P   ISW  
Sbjct: 410 NDRESAEA---SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEISWEL 465

Query: 242 NGLPILS 248
           +G  I +
Sbjct: 466 DGKKIAN 472

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  160 bits (406), Expect = 4e-45
 Identities = 57/255 (22%), Positives = 95/255 (37%), Gaps = 42/255 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
                    QT+  G P    C  TGNP   +SW  DG  +                   
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------- 387

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP--FVRPM 119
                        L IE+V+K+ D+G+Y C   N +    +S  + +     P    +  
Sbjct: 388 ----------ESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAF 436

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--------FPNGTLLIEN 171
              +   G  ++L C   G P   I+W+   +++  N R +V             L I +
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS 496

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
           V  + D G+Y C A +K G +   +  ++V   P I   E +  + +G+   V C V  G
Sbjct: 497 VHAN-DGGLYKCIAKSKVGVAEH-SAKLNVYGLPYIRQME-KKAIVAGETLIVTCPVA-G 552

Query: 232 DPPLTISWLKNGLPI 246
            P  +I W ++   +
Sbjct: 553 YPIDSIVWERDNRAL 567

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  155 bits (394), Expect = 2e-43
 Identities = 52/260 (20%), Positives = 87/260 (33%), Gaps = 36/260 (13%)

Query: 12  QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
           + +  G    +KC+      +    +SW  D                         + + 
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN--------------YFPGAEYDGKY 193

Query: 69  KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISVTGAP---------FVR 117
            V P+G L I  V  +     Y C   ++    +  S      V   P          + 
Sbjct: 194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLA 253

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-----NGTLLIENV 172
                +      + L CP  GYP+    W K ++     +   +       +GTL+I++ 
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 313

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232
             + D G Y C   N  G  S +   ++VT P           +  G  A   C  T G+
Sbjct: 314 VVE-DSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT-GN 370

Query: 233 PPLTISWLKNGLPILSAMGV 252
           P  T+SW+K+G  I  +  V
Sbjct: 371 PIKTVSWMKDGKAIGHSESV 390

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  155 bits (393), Expect = 3e-43
 Identities = 43/261 (16%), Positives = 81/261 (31%), Gaps = 44/261 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           +          ++C A+GNP P I W + DG  +                    +   ++
Sbjct: 48  RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG------------------DVPGLRQ 89

Query: 70  VFPNGTLLIENVQ-----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVS 123
           +  +G L+    +     ++    VY C A N+ G   S++VH+    A  +   +    
Sbjct: 90  ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 149

Query: 124 AIAGEPLYLGCPV---AGYPIESITWQK-----GVQQLPLNRRQKVFPNGTLLIENVQKD 175
            I G    + C +       +E ++W              + +  V P+G L I  V  +
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 209

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTV---------PPKIAPFEFQPD-LHSGDRAGVQ 225
                Y C   ++    +  +      V         P  ++  +F            + 
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALL 269

Query: 226 CLVTKGDPPLTISWLKNGLPI 246
           C    G P     W K     
Sbjct: 270 CPAQ-GYPVPVFRWYKFIEGT 289

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  143 bits (363), Expect = 3e-39
 Identities = 51/207 (24%), Positives = 78/207 (37%), Gaps = 26/207 (12%)

Query: 7   YKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
           + F +   Q G  ++L C   G   P +I W LDG  ++ D     +R+G          
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR--------- 674

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSA 124
                     L IE V+     G + C A N  G        ++V   P ++    + + 
Sbjct: 675 ------RGSVLTIEAVEAS-HAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAF 726

Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK------VFPNGTLLIENVQKDHDR 178
             G    + C   G+P   +TW+K V   P   +            GTL ++N+QK  + 
Sbjct: 727 AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT-NE 785

Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPP 205
           G Y C A N  G   S  + ISV    
Sbjct: 786 GYYLCEAINGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  121 bits (304), Expect = 2e-31
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 13/184 (7%)

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISVTGAP-FVR-PMGNVSAIAGEPLYL 132
           + + N +      ++   A    G  + + N   +    P F++ P   +         +
Sbjct: 1   MNMPNERLK-WLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEI 59

Query: 133 GCPVAGYPIESITWQK--GVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTA 185
            C  +G P+  I W +  G     +   +++  +G L+    +     ++    VY C A
Sbjct: 60  ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTK--GDPPLTISWLKNG 243
            N+ G   S++VH+   V         +  +  G+ A ++CL+     D    +SW  + 
Sbjct: 120 RNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDE 179

Query: 244 LPIL 247
               
Sbjct: 180 EENY 183

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I +   +    G    ++C A G P P ++WK       G+               L
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK------------DL 762

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
             +   +V   GTL ++N+QK  + G Y C A N  G   S  + ISV    
Sbjct: 763 KKSDNIRV-EEGTLHVDNIQKT-NEGYYLCEAINGIGSGLSAVIMISVQAHH 812

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  204 bits (520), Expect = 6e-64
 Identities = 69/260 (26%), Positives = 107/260 (41%), Gaps = 35/260 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
              + +        G  V L C A  +   P I WK DG  LA    +            
Sbjct: 22  LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDD------------ 69

Query: 62  LPLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTAT-NKQGRSSSQNVHISVTGAP-F 115
                R++  PNG+LLI+N+        D G+Y C A+    G   S+   + V G   F
Sbjct: 70  -----RKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIENV 172
           +    +++A  G+ + L C V G P+ +I WQK    +  +P + R  V P+G L I  +
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHS-----GDRAGVQC 226
           Q   D GVY C+A N     +     + +   P +     F     +     G  A ++C
Sbjct: 185 QPG-DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243

Query: 227 LVTKGDPPLTISWLKNGLPI 246
            V+ G PP + +WL+    I
Sbjct: 244 CVS-GYPPPSFTWLRGEEVI 262

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  196 bits (499), Expect = 7e-61
 Identities = 71/245 (28%), Positives = 104/245 (42%), Gaps = 28/245 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            T   G  V LKC   G+P P I W+ +   L                  +P + R  V 
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL----------------NPIPGDSRVVVL 174

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FVRPMGNVSA 124
           P+G L I  +Q   D GVY C+A N     +     + +   P       F++   NV A
Sbjct: 175 PSGALQISRLQPG-DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233

Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDRGVYWC 183
           I G+   L C V+GYP  S TW +G + + L +++  +     LLI NV  D D G Y C
Sbjct: 234 IEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD-DSGTYTC 292

Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
             T K    S+    ++V VPP           +       +C V+ G P  T++W+KNG
Sbjct: 293 VVTYKNENISAS-AELTVLVPPWFLNHPSNLYAYESMDIEFECAVS-GKPVPTVNWMKNG 350

Query: 244 LPILS 248
             ++ 
Sbjct: 351 DVVIP 355

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  147 bits (373), Expect = 3e-42
 Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 23/203 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
              + +        G    L+C  +G P P  +W      +                   
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ------------------ 263

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
             +++  +     LLI NV  D D G Y C  T K    S+    ++V   P F+    N
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDD-DSGTYTCVVTYKNENISAS-AELTVLVPPWFLNHPSN 321

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 181
           + A     +   C V+G P+ ++ W K    +  +   ++     L I  V K  D G Y
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKS-DEGFY 380

Query: 182 WCTATNKQGRSSSQNVHISVTVP 204
            C A N+ G + S +  + V  P
Sbjct: 381 QCVAENEAGNAQS-SAQLIVPKP 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  105 bits (264), Expect = 1e-26
 Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 17/173 (9%)

Query: 94  ATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQ 151
             ++   SS  + H     +  FV    +   + G  + L C       +  I W+K   
Sbjct: 3   WGSELE-SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61

Query: 152 QLPLNR--RQKVFPNGTLLIENVQ----KDHDRGVYWCTAT-NKQGRSSSQNVHISVTVP 204
            L L    R++  PNG+LLI+N+        D G+Y C A+    G   S+   + V  P
Sbjct: 62  ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121

Query: 205 PKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
            +   F  Q +      GD   ++C V  GDP  TI W KN   +    G  R
Sbjct: 122 LR---FLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSR 170

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 73.3 bits (180), Expect = 3e-15
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 21/111 (18%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
             P  +             +  +C  +G P P ++W  +G                    
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG-------------------D 351

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
            +  +   ++     L I  V K  D G Y C A N+ G + S +  + V 
Sbjct: 352 VVIPSDYFQIVGGSNLRILGVVKS-DEGFYQCVAENEAGNAQS-SAQLIVP 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  197 bits (503), Expect = 2e-61
 Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 36/257 (14%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
              + P   + ++C A GNP P   W  +       +                  R    
Sbjct: 26  DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP----------------RVSMR 69

Query: 71  FPNGTLLIENV---QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAI 125
             +GTL+I+     + +   G Y C A NK G + S  + + V+ +P      +  V   
Sbjct: 70  RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQ 129

Query: 126 AGEPLYLGC-PVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
            G PL L C P  G P   I W    ++ +  ++R     NG L   NV     +  Y C
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189

Query: 184 TATNKQGRSSSQNVHISVTV----------PPKIAPFEFQPDLH--SGDRAGVQCLVTKG 231
            A      +  Q    ++ V          P  + P           G    ++C+ + G
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS-G 248

Query: 232 DPPLTISWLKNGLPILS 248
            P   I+W K G  + S
Sbjct: 249 VPTPDIAWYKKGGDLPS 265

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  167 bits (425), Expect = 8e-50
 Identities = 63/270 (23%), Positives = 98/270 (36%), Gaps = 46/270 (17%)

Query: 8   KFIQQTLQP-----GPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
            + ++ L P     G P++L+C    G P+P I W                         
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP------------------ 158

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------- 111
           +  ++R     NG L   NV     +  Y C A      +  Q    ++           
Sbjct: 159 ITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAER 218

Query: 112 GAPFVRPMG---NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLL 168
              F+ P G   +   + G  L L C  +G P   I W K    LP ++ +    N  L 
Sbjct: 219 TPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALR 278

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQ 225
           I NV +  D G Y+C A+NK G      + + V   P    +  +P    L  G+   + 
Sbjct: 279 ITNVSE-EDSGEYFCLASNKMGSIRHT-ISVRVKAAPY---WLDEPKNLILAPGEDGRLV 333

Query: 226 CLVTKGDPPLTISWLKNGLPILSAMGVGRK 255
           C    G+P  T+ W+ NG P+ SA     +
Sbjct: 334 CRAN-GNPKPTVQWMVNGEPLQSAPPNPNR 362

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  141 bits (358), Expect = 5e-40
 Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 28/194 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q +  G  + L+CIA+G PTP I+W   G                     LP ++ +   
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKG-------------------GDLPSDKAKFEN 272

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPL 130
            N  L I NV +  D G Y+C A+NK G      + + V  AP ++    N+    GE  
Sbjct: 273 FNKALRITNVSE-EDSGEYFCLASNKMGSIRHT-ISVRVKAAPYWLDEPKNLILAPGEDG 330

Query: 131 YLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
            L C   G P  ++ W      +Q  P N  ++V    T++  + Q    R VY C  +N
Sbjct: 331 RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-AGDTIIFRDTQIS-SRAVYQCNTSN 388

Query: 188 KQGRSSSQNVHISV 201
           + G   + N  +SV
Sbjct: 389 EHGYLLA-NAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  107 bits (268), Expect = 3e-27
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 105 NVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN---RRQ 159
           ++   +T  P    +   +      + + + C   G P  S  W +  +   +    R  
Sbjct: 8   SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVS 67

Query: 160 KVFPNGTLLIENV---QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-D 215
               +GTL+I+     + +   G Y C A NK G + S  + + V+  P        P  
Sbjct: 68  MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127

Query: 216 LHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 247
           +  G    +QC    G P   I W+ + +  +
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 75.7 bits (186), Expect = 6e-16
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 19/108 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P  + +     L PG    L C A GNP P + W ++G PL                Q  
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPL----------------QSA 356

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           P N  ++V    T++  + Q    R VY C  +N+ G   + N  +SV
Sbjct: 357 PPNPNREV-AGDTIIFRDTQIS-SRAVYQCNTSNEHGYLLA-NAFVSV 401

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  193 bits (492), Expect = 2e-58
 Identities = 57/252 (22%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
           P    K +   L  G   + KC  TG     I+W  D   +  G  +             
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY------------- 244

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPM 119
               +   V    TL +  V K  D G Y C A+N  G+ S     + V   P    +  
Sbjct: 245 ----KMTLVENTATLTVLKVTKG-DAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLE 298

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR---QKVFPNGTLLIENVQKDH 176
            +      E     C + G P   + W K   ++  + +     V     L + N+  + 
Sbjct: 299 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE- 357

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236
           D G Y C A N  G S+S +  + V  PP         +   G    ++C +  G PP  
Sbjct: 358 DSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQ 415

Query: 237 ISWLKNGLPILS 248
           +SW K+   + S
Sbjct: 416 VSWHKDKRELRS 427

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  187 bits (477), Expect = 5e-56
 Identities = 61/254 (24%), Positives = 91/254 (35%), Gaps = 27/254 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    K        G PV+ +C   G+    +SW  DG  L  D +              
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN-------------- 147

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP--FVRPM 119
              +   +    TL I    +    G Y C+A+N  G  SSS  + +S    P  F    
Sbjct: 148 --LQTSFIHNVATLQILQTDQS-HVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP 204

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDH 176
            +V    GE     C V G     ITW K  +++      K+       TL +  V K  
Sbjct: 205 VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG- 263

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTKGDPPL 235
           D G Y C A+N  G+ S     + V  PP+     E    +   +    +C +  G P +
Sbjct: 264 DAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEI 321

Query: 236 TISWLKNGLPILSA 249
            + W K+   I  +
Sbjct: 322 KVLWYKDETEIQES 335

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  178 bits (453), Expect = 1e-52
 Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 25/242 (10%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            + ++       +C   G+P   + W  D   +                      R   V
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK----------------FRMSFV 343

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEP 129
                L + N+  + D G Y C A N  G S+S +  + V   P F +    V  + G  
Sbjct: 344 ESVAVLEMYNLSVE-DSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGAD 401

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTAT 186
           ++L C + G P   ++W K  ++L   ++ K+       ++ I NV    D G Y C A+
Sbjct: 402 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKAS 460

Query: 187 NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           N  G  +     I++  PP+            G+   +Q  +  G  P++++W K+   I
Sbjct: 461 NDVGSDTCV-GSITLKAPPRFVKKLSDISTVVGEEVQLQATIE-GAEPISVAWFKDKGEI 518

Query: 247 LS 248
           + 
Sbjct: 519 VR 520

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  175 bits (446), Expect = 1e-51
 Identities = 61/255 (23%), Positives = 92/255 (36%), Gaps = 29/255 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P  I          G P++L+C   G P   I+W  +   L                   
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPA-------------- 51

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRP 118
              + Q      +L+I  V    D G Y C A N  G  +S +  + +        F R 
Sbjct: 52  --YKMQFKNNVASLVINKVDHS-DVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSFARK 107

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKD 175
           + +V    G P+   C + G     ++W K  + L  +   +        TL I    + 
Sbjct: 108 LKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS 167

Query: 176 HDRGVYWCTATNKQGR-SSSQNVHISV-TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP 233
              G Y C+A+N  G  SSS  + +S   VPP         DL  G+    +C VT G  
Sbjct: 168 -HVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTA 225

Query: 234 PLTISWLKNGLPILS 248
           P+ I+W K+   I  
Sbjct: 226 PIKITWAKDNREIRP 240

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  130 bits (328), Expect = 7e-35
 Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 33/209 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    K        G  V L+C   G P   +SW  D                    ++L
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK-------------------REL 425

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRP 118
              ++ K+       ++ I NV    D G Y C A+N  G  +     I++   P FV+ 
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSDTCV-GSITLKAPPRFVKK 483

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN----RRQKVFPNGTLLIENVQK 174
           + ++S + GE + L   + G    S+ W K   ++                TL     + 
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTV 203
             + G Y C   N+ G         +++V
Sbjct: 544 A-NAGKYTCQIKNEAGTQEC---FATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           + P+ + K    +   G  V L+    G     ++W  D   +  +         E    
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN--- 532

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                         TL     +   + G Y C   N+ G        +SV
Sbjct: 533 ------------IATLQFSRAEPA-NAGKYTCQIKNEAGTQEC-FATLSV 568

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  179 bits (456), Expect = 1e-55
 Identities = 58/258 (22%), Positives = 90/258 (34%), Gaps = 32/258 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   R E       A     
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA----- 61

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------- 114
                        L I+ ++   D  VY C A N  G  +  +  ++V            
Sbjct: 62  ----------GAVLRIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPN 110

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIEN 171
                            + C  +G P   ITW K    V     N R K   +G L IE+
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLV 228
            ++  D+G Y C ATN  G   S   ++ V V    P+ +      ++  G    + C+ 
Sbjct: 171 SEET-DQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA 229

Query: 229 TKGDPPLTISWLKNGLPI 246
             G P   + W++    +
Sbjct: 230 V-GSPMPYVKWMQGAEDL 246

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  141 bits (358), Expect = 5e-41
 Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 26/200 (13%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           + ++     ++ C A+GNP P I+W  D  P+                     N R K  
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS----------------ASNGRIKQL 161

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV---TGAP-FVRPMGNVSAIAG 127
            +G L IE+ ++  D+G Y C ATN  G   S   ++ V     AP F     +   + G
Sbjct: 162 RSGALQIESSEET-DQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPG 220

Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
             + + C   G P+  + W +G + L         P G  ++E      D   Y C A +
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDD---MPVGRNVLELTDV-KDSANYTCVAMS 276

Query: 188 KQGRSSSQNVHISVTVPPKI 207
             G   +    I+V   PK 
Sbjct: 277 SLGVIEAV-AQITVKSLPKA 295

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  102 bits (256), Expect = 4e-26
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----P 163
           +    P F++   +   ++G      C   G P   +TW K  +++   R + +      
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTVPPKIAPFEFQPD---LH 217
              L I+ ++   D  VY C A N  G  +      V     +P      +  P    + 
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
               A + C  + G+P   I+W K+ LP+  +   GR
Sbjct: 122 RTRTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGR 157

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 24/112 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+     +   + PG  V++ C+A G+P P++ W      L  +                
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-------------- 251

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                    P G  ++E      D   Y C A +  G   +    I+V   P
Sbjct: 252 --------MPVGRNVLELTDV-KDSANYTCVAMSSLGVIEAV-AQITVKSLP 293

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  177 bits (450), Expect = 1e-53
 Identities = 59/266 (22%), Positives = 83/266 (31%), Gaps = 41/266 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P L  +  +   +   P  L+CI  GN      SWK DG                     
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-------------- 52

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
              +        G+L+    Q   D G Y C A    G +SS+ +    T          
Sbjct: 53  ---HNAALRKDEGSLVFLRPQAS-DEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTH 108

Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLN-------RRQKVFPNGTLLIENV 172
             + I G P  L C +   YP   ITW+K +     N       RR    P+G L    V
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168

Query: 173 QKD--HDRGVYWCTATNKQGRSSSQNVHISVTV----------PPKIAPFEFQPDLHSGD 220
            K+   D   Y CTA N         V   +             P            +GD
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228

Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
              + C+    +P    ++ KNG  +
Sbjct: 229 VTMIYCMYG-SNPMGYPNYFKNGKDV 253

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  163 bits (414), Expect = 2e-48
 Identities = 54/255 (21%), Positives = 83/255 (32%), Gaps = 34/255 (13%)

Query: 12  QTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +T   G P  L C +    P P I+WK        +                  +RR   
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA------------DVTDFDRRITA 157

Query: 71  FPNGTLLIENVQKD--HDRGVYWCTATNKQGRSSSQNVHISVTGAP-----------FVR 117
            P+G L    V K+   D   Y CTA N         V   + G                
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-----FPNGTLLIENV 172
              ++ A AG+   + C     P+    + K  + +  N   ++          LL +  
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA-PFEFQPDLHSGDRAGVQCLVTKG 231
             + D GVY C   N  G+    ++ ++V   PK     E    +  G    + C VT G
Sbjct: 278 LPE-DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT-G 335

Query: 232 DPPLTISWLKNGLPI 246
            P   + W  N  P+
Sbjct: 336 LPAPNVVWSHNAKPL 350

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  153 bits (387), Expect = 2e-44
 Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 21/201 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P   Y       + G    + C+   NP  + ++  +G  + G+  +             
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI----------- 261

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF--VRPMG 120
               R        LL +    + D GVY C   N  G+    ++ ++V  AP    +P  
Sbjct: 262 ---TRHNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEK 317

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
            +    G+ + + C V G P  ++ W    + L   R      +  L+I+ V+   D+G 
Sbjct: 318 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT--VTDSGLVIKGVKNG-DKGY 374

Query: 181 YWCTATNKQGRSSSQNVHISV 201
           Y C ATN+ G        + V
Sbjct: 375 YGCRATNEHGDKYF-ETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  105 bits (264), Expect = 1e-26
 Identities = 28/153 (18%), Positives = 42/153 (27%), Gaps = 5/153 (3%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVF--PN 164
            V   P        V      P  L C + G       +W+K  +               
Sbjct: 2   PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61

Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGV 224
           G+L+    Q   D G Y C A    G +SS+ +    T          +     G    +
Sbjct: 62  GSLVFLRPQAS-DEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120

Query: 225 QCLVTKGDPPLTISWLKNGLPILSAMGVGRKGN 257
            C++    P   I+W K          V     
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  173 bits (441), Expect = 2e-53
 Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 31/255 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            Q+     +  L  G      C A G P     +   G                   +++
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQG-------------------EKI 45

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRP 118
              +R  V   G    L I N   + D G+Y C AT+ +G++    V + +     F   
Sbjct: 46  ISTQRVVVQKEGVRSRLTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 104

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDH 176
           +       GE   + C V+  P  +++W    +++    + R  +  N  L I N+ K  
Sbjct: 105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS- 163

Query: 177 DRGVYWCTATNK-QGRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDP 233
           D G+Y C    + +G    +++ + V VPP I+  +   +     G+     C  + G P
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSP 222

Query: 234 PLTISWLKNGLPILS 248
              ISW +NG  I  
Sbjct: 223 EPAISWFRNGKLIEE 237

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  149 bits (379), Expect = 3e-44
 Identities = 43/210 (20%), Positives = 70/210 (33%), Gaps = 25/210 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
                    Q  + G    + C  + +P P +SW      +                   
Sbjct: 99  LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS--------------- 143

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRP 118
             + R  +  N  L I N+ K  D G+Y C    +          I +   P      + 
Sbjct: 144 --DNRFAMLANNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHD 177
             N +A  GE +   C  +G P  +I+W +  + +  N +  +   N  L + N+    D
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS-D 259

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
            G Y C ATNK G    +   + V V    
Sbjct: 260 GGPYVCRATNKAG-EDEKQAFLQVFVQHHH 288

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  109 bits (274), Expect = 9e-29
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
               +  V    GE  +  C   G P     +    +++   +R  V   G    L I N
Sbjct: 7   VTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYN 66

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLV 228
              + D G+Y C AT+ +G++    V + +        F       +   G+ A V C V
Sbjct: 67  ANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLT---FREVVSPQEFKQGEDAEVVCRV 122

Query: 229 TKGDPPLTISWLKNGLPILSA 249
           +   P   +SWL +   + + 
Sbjct: 123 S-SSPAPAVSWLYHNEEVTTI 142

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  171 bits (434), Expect = 2e-52
 Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 26/251 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    K +   L  G   + KC  TG     I+W  D   +    +              
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY------------- 52

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
              +   V    TL +  V K  D G Y C A+N  G+ S  +  + V   P    +   
Sbjct: 53  ---KMTLVENTATLTVLKVTKG-DAGQYTCYASNVAGKDSC-SAQLGVQEPPRFIKKLEP 107

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHD 177
           +      E     C + G P   + W K   ++  + + ++        L + N+  + D
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE-D 166

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
            G Y C A N  G S+S +  + V  PP         +   G    ++C +  G PP  +
Sbjct: 167 SGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQV 224

Query: 238 SWLKNGLPILS 248
           SW K+   + S
Sbjct: 225 SWHKDKRELRS 235

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  142 bits (360), Expect = 2e-41
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 26/197 (13%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            + ++       +C   G+P   + W  D   +                      R   V
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK----------------FRMSFV 151

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEP 129
                L + N+  + D G Y C A N  G S+S +  + V   P F +    V  + G  
Sbjct: 152 ESVAVLEMYNLSVE-DSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGAD 209

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTAT 186
           ++L C + G P   ++W K  ++L   ++ K+       ++ I NV    D G Y C A+
Sbjct: 210 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKAS 268

Query: 187 NKQGRSSSQNVHISVTV 203
           N  G  +      S+T+
Sbjct: 269 NDVGSYTC---VGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  109 bits (275), Expect = 5e-29
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIEN 171
           F     +V    GE     C V G     ITW K  +++      K+       TL +  
Sbjct: 8   FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK 67

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTK 230
           V K  D G Y C A+N  G+ S  +  + V  PP+     E    +   +    +C +  
Sbjct: 68  VTKG-DAGQYTCYASNVAGKDSC-SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG- 124

Query: 231 GDPPLTISWLKNGLPILSA 249
           G P + + W K+   I  +
Sbjct: 125 GSPEIKVLWYKDETEIQES 143

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 24/113 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    K        G  V L+C   G P   +SW  D                    ++L
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK-------------------REL 233

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
              ++ K+       ++ I NV    D G Y C A+N  G  +     I++  
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTC-VGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
            PP         DL  G+    +C VT G  P+ I+W K+   I   
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPG 49

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  179 bits (456), Expect = 4e-52
 Identities = 55/254 (21%), Positives = 82/254 (32%), Gaps = 19/254 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             ++       L  G  + L C A       I +  +         +  NR         
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR------DLK 278

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM--- 119
             +  +      TL I+ V +  D+G+Y C A++    +   +  + V   PFV      
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGM 336

Query: 120 -GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
              V A  GE + +     GYP   I W K    +PL     +     L I  V +  D 
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKN--GIPLESNHTIKAGHVLTIMEVSER-DT 393

Query: 179 GVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPP 234
           G Y    TN   +   S  V + V VPP+I              G    + C V    PP
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453

Query: 235 LTISWLKNGLPILS 248
             I W        +
Sbjct: 454 HHIHWYWQLEEECA 467

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  136 bits (343), Expect = 1e-36
 Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 50/283 (17%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEAR----------- 58
             + Q G   +L C     P P HI W         +       +               
Sbjct: 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491

Query: 59  --VQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
               ++ +N+ Q     G       +     +    +Y C A NK G    + +   VT 
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAVNKVG-RGERVISFHVTR 549

Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFP-------- 163
            P +    ++     E + L C       E++TW K G Q LP++  +   P        
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609

Query: 164 --------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
                            + ++N     D+G Y C A +++       V   +TV  ++AP
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQ-DQGDYVCLAQDRKT-KKRHCVVRQLTVLERVAP 667

Query: 210 -FEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
                 +  +   G+   V C  + G+PP  I W K+   ++ 
Sbjct: 668 TITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVE 709

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  134 bits (338), Expect = 5e-36
 Identities = 38/265 (14%), Positives = 75/265 (28%), Gaps = 34/265 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+L  +    T++    + + C   G       W  +           +   G       
Sbjct: 32  PRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGL------ 83

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-- 120
                       TL I  V  + D G Y C        S    V++    +PF+  +   
Sbjct: 84  ---------FCKTLTIPKVIGN-DTGAYKCFYRETDLASVIY-VYVQDYRSPFIASVSDQ 132

Query: 121 ----NVSAIAGEPLYLGCPVAG--YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
                ++    + + + C  +     +         + +P   R          I +   
Sbjct: 133 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI 192

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP----DLHSGDRAGVQCLVT- 229
               G+ +C A        S  ++I V V  +I      P    +L  G++  + C    
Sbjct: 193 S-YAGMVFCEAKINDESYQS-IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250

Query: 230 KGDPPLTISWLKNGLPILSAMGVGR 254
           + +  +  +W            V R
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNR 275

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  134 bits (337), Expect = 8e-36
 Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 12/224 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
              I             VSL C A  +   +++W   G                  +  L
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609

Query: 63  PLNRRQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTGAP- 114
                            + ++N     D+G Y C A +++ +        + +    AP 
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQ-DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQ 173
               + N +   GE + + C  +G P   I W K  + L  +        N  L I  V+
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR 728

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLH 217
           K+ D G+Y C A +  G +        +    +    E     H
Sbjct: 729 KE-DEGLYTCQACSVLGCAKV-EAFFIIEGAQEKTNLERTHHHH 770

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  125 bits (315), Expect = 7e-33
 Identities = 52/282 (18%), Positives = 75/282 (26%), Gaps = 72/282 (25%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
                G  V +     G P P I W  +G                     +PL     + 
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNG---------------------IPLESNHTIK 378

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPM----GNVSAIA 126
               L I  V +  D G Y    TN   +   S  V + V   P +          S   
Sbjct: 379 AGHVLTIMEVSER-DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY 437

Query: 127 GEPLYLGCPVAGYPI-ESITWQK--------------------------------GVQQL 153
           G    L C V   P    I W                                  G  ++
Sbjct: 438 GTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI 497

Query: 154 PLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
            +N+ Q     G       +     +    +Y C A NK G    + +   VT  P+I  
Sbjct: 498 EVNKNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAVNKVG-RGERVISFHVTRGPEI-- 553

Query: 210 FEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
              QPD+     +   + C          ++W K G   L  
Sbjct: 554 -TLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPI 593

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 95.2 bits (236), Expect = 2e-22
 Identities = 25/170 (14%), Positives = 45/170 (26%), Gaps = 16/170 (9%)

Query: 88  GVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQ 147
            ++ C  T            +S+           ++  A   L + C   G       W 
Sbjct: 10  ALWLCVETRAASVGLP---SVSLDLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWP 64

Query: 148 KGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
                           +G    TL I  V  + D G Y C        S    V++    
Sbjct: 65  NNQSGSEQRVEVTECSDGLFCKTLTIPKVIGN-DTGAYKCFYRETDLASVIY-VYVQDYR 122

Query: 204 PPKIAPFEFQPDL-----HSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
            P IA    Q  +     +      + CL +  +  +++         + 
Sbjct: 123 SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  166 bits (423), Expect = 1e-51
 Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 22/212 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++       +  G P +L C A G PTP I W   G  +  D+ + ++          
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-------- 61

Query: 63  PLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FV 116
                  + P+G+L    +        D GVY C A N  G + S +  + V      F 
Sbjct: 62  ------MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR 115

Query: 117 RPMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
           +   +V    GEP  + C P  G+P  +I+W+K    L     +     G L+I   +K 
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKS 175

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
            D G Y C  TN  G   S+   ++V   P  
Sbjct: 176 -DAGKYVCVGTNMVGERESEVAELTVLERPSF 206

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  104 bits (261), Expect = 1e-27
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTLLI 169
            V    ++    GEP  L C   G P  +I W KG +++  ++      + + P+G+L  
Sbjct: 12  IVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71

Query: 170 ENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRA 222
             +        D GVY C A N  G + S +  + V +      F   P    +  G+ A
Sbjct: 72  LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD--FRQNPSDVMVAVGEPA 129

Query: 223 GVQCLVTKGDPPLTISWLKNGLPI 246
            ++C   +G P  TISW K+G P+
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPL 153

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  165 bits (419), Expect = 2e-51
 Identities = 60/204 (29%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +               +  C     P P ISW  +   +                   
Sbjct: 8   PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK------------------ 49

Query: 63  PLNRRQKVFPNGTLL-IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
             + R  +  NG LL I +V+   D G+Y CTA N  G +      + V   P   RP  
Sbjct: 50  LFDTRYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI 108

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           NV  I G    L C   G P  S++W KG   L  N R  V  +G+L I NVQK+ D G 
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE-DAGQ 167

Query: 181 YWCTATNKQGRSSSQNVHISVTVP 204
           Y C A N  G + S+ V + V V 
Sbjct: 168 YRCVAKNSLGTAYSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  105 bits (265), Expect = 2e-28
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 5/142 (3%)

Query: 110 VTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTL 167
           +  AP    P+  V A+  E     C V  YP   I+W +    + L + R  +  NG L
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63

Query: 168 L-IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQC 226
           L I +V+   D G+Y CTA N  G +      + V + PKI        +  G +A + C
Sbjct: 64  LTILSVED-SDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122

Query: 227 LVTKGDPPLTISWLKNGLPILS 248
               G+P  ++SW+K    +  
Sbjct: 123 TTM-GNPKPSVSWIKGDSALRE 143

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  170 bits (431), Expect = 6e-51
 Identities = 63/252 (25%), Positives = 84/252 (33%), Gaps = 35/252 (13%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           +         V L C   GNP PHI WKL+G  +                        + 
Sbjct: 16  MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD------------------FRY 57

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAG 127
              +G+LLI N  K  D G Y C ATN  G   S+   +          R    VS   G
Sbjct: 58  SVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG 117

Query: 128 EPLYLGC-PVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
           + + L C P       S  W          NRR      G L I  V+K  D G Y C  
Sbjct: 118 QGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS-DVGNYTCVV 176

Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLH----------SGDRAGVQCLVTKGDPPL 235
           TN             + +       E++P +            G    ++C    G+P  
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPVP 235

Query: 236 TISWLK-NGLPI 246
           TI W + +G PI
Sbjct: 236 TILWRRADGKPI 247

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  161 bits (408), Expect = 1e-47
 Identities = 55/252 (21%), Positives = 89/252 (35%), Gaps = 40/252 (15%)

Query: 12  QTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            +++ G  + L C     +     +W  + YP                      NRR   
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS------------------YQDNRRFVS 153

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----------FVRPM 119
              G L I  V+K  D G Y C  TN             +                V+  
Sbjct: 154 QETGNLYIAKVEKS-DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
             V A  G  + L C   G P+ +I W++   +    + ++   NG L I N Q++ D G
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQE-DAG 271

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLT 236
            Y C A N +G++ ++   ++    P    +        +   +    +C    G P  T
Sbjct: 272 SYECVAENSRGKNVAK-GQLTFYAQPN---WVQIINDIHVAMEESVFWECKAN-GRPKPT 326

Query: 237 ISWLKNGLPILS 248
             WLKNG P+L+
Sbjct: 327 YRWLKNGDPLLT 338

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  146 bits (370), Expect = 6e-42
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 28/202 (13%)

Query: 3   PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQ 60
           P++  +F +    + G  V L+C A GNP P I W + DG P+A                
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA---------------- 248

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
                + ++   NG L I N Q++ D G Y C A N +G++ ++   ++    P +V+ +
Sbjct: 249 ----RKARRHKSNGILEIPNFQQE-DAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQII 302

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
            ++     E ++  C   G P  +  W K    L    R ++   GTL I  V    D G
Sbjct: 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLS-DAG 360

Query: 180 VYWCTATNKQGRSSSQNVHISV 201
           +Y C A NK G   S +  +SV
Sbjct: 361 MYQCVAENKHGVIFS-SAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  107 bits (268), Expect = 3e-27
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR-RQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            + + L C V G P   I W+     + +    +    +G+LLI N  K  D G Y C A
Sbjct: 23  EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82

Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNGL 244
           TN  G   S+   +                 +  G    + C        L+ +W+ N  
Sbjct: 83  TNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142

Query: 245 PIL 247
           P  
Sbjct: 143 PSY 145

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 72.2 bits (177), Expect = 9e-15
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 22/110 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P  +       +     V  +C A G P P   W  +G                     L
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG-------------------DPL 336

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
               R ++   GTL I  V    D G+Y C A NK G   S +  +SV  
Sbjct: 337 LTRDRIQI-EQGTLNITIVNLS-DAGMYQCVAENKHGVIFS-SAELSVIA 383

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  173 bits (439), Expect = 3e-50
 Identities = 47/251 (18%), Positives = 75/251 (29%), Gaps = 35/251 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
                  +  + + G  ++L C A  NP    SW ++G                      
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ------------------ 245

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP---FVRP 118
                        L I N+  + + G Y C A N     + +    I+V   P   F+  
Sbjct: 246 ---------STQELFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS 295

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
             +      + + L C         + W          R Q    N TL + +V ++ D 
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRN-DV 354

Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTI 237
           G Y C   N+     S  V ++V   P              G    + C     +PP   
Sbjct: 355 GPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQY 413

Query: 238 SWLKNGLPILS 248
           SWL +G     
Sbjct: 414 SWLIDGNIQQH 424

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  171 bits (435), Expect = 1e-49
 Identities = 49/252 (19%), Positives = 73/252 (28%), Gaps = 37/252 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
                       +PG  +SL C A  NP    SW +DG                      
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ------------------ 423

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVR 117
                        L I N+ +  + G+Y C A N      S+    ++T +       + 
Sbjct: 424 ---------HTQELFISNITEK-NSGLYTCQANNSAS-GHSRTTVKTITVSAELPKPSIS 472

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
              +      + +   C         + W  G       R Q    N TL + NV + +D
Sbjct: 473 SNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTR-ND 531

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLT 236
              Y C   N    + S  V + V   P             SG    + C     +P   
Sbjct: 532 ARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSA-SNPSPQ 590

Query: 237 ISWLKNGLPILS 248
            SW  NG+P   
Sbjct: 591 YSWRINGIPQQH 602

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  159 bits (404), Expect = 3e-45
 Identities = 44/238 (18%), Positives = 70/238 (29%), Gaps = 7/238 (2%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
             G  V L            SW          +        +        + R+ ++PN 
Sbjct: 12  AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLY 131
           +LLI+N+ + +D G Y          +        V      P +    +      + + 
Sbjct: 72  SLLIQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVA 130

Query: 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191
             C         + W          R Q    N TL + NV ++ D   Y C   N    
Sbjct: 131 FTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN-DTASYKCETQNPVSA 189

Query: 192 SSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
             S +V ++V   P             SG+   + C     +PP   SW  NG    S
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA-SNPPAQYSWFVNGTFQQS 246

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  141 bits (357), Expect = 9e-39
 Identities = 45/242 (18%), Positives = 67/242 (27%), Gaps = 36/242 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           + ++    V+  C           W ++   L                      R Q   
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS------------------PRLQLSN 161

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEP 129
            N TL + NV ++ D   Y C   N      S +V ++V   P        N S  +GE 
Sbjct: 162 GNRTLTLFNVTRN-DTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGEN 220

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           L L C  A  P    +W                    L I N+  + + G Y C A N  
Sbjct: 221 LNLSCHAASNPPAQYSWFVNGTFQQ--------STQELFIPNITVN-NSGSYTCQAHNSD 271

Query: 190 GR-SSSQNVHISVTVPPKIAPFEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
              + +    I+V   P                D   + C         T  W  N   +
Sbjct: 272 TGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP--EIQNTTYLWWVNNQSL 329

Query: 247 LS 248
             
Sbjct: 330 PV 331

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  124 bits (313), Expect = 9e-33
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 32/195 (16%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           + ++    V+  C      T    W ++G  L                      R Q   
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSL------------------PVSPRLQLSN 517

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEP 129
            N TL + NV + +D   Y C   N    + S  V + V   P   +    + S ++G  
Sbjct: 518 GNRTLTLFNVTR-NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGAN 576

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           L L C  A  P    +W+                   L I  +  + + G Y C  +N  
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQ--------HTQVLFIAKITPN-NNGTYACFVSNLA 627

Query: 190 GRSSSQNVHISVTVP 204
               + ++  S+TV 
Sbjct: 628 T-GRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
              I      +   G  ++L C +  NP+P  SW+++G P                    
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ------------------ 601

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTG 112
                        L I  +  + + G Y C  +N    R++S    I+V+ 
Sbjct: 602 ---------HTQVLFIAKITPN-NNGTYACFVSNLATGRNNSIVKSITVSA 642

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  159 bits (404), Expect = 8e-49
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 29/216 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I K   Q ++ G   S  C A G+P P I W+ +G  ++G +               
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ--------------- 51

Query: 63  PLNRRQKVFPNGTLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----- 114
             +R   +   G + I  ++      D   Y C A N  G + S +  +++         
Sbjct: 52  --SRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG 109

Query: 115 ---FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN 171
                +  G      G  + + C   G P  +I W K   ++ ++  +    +G L IEN
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN 169

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
            +++ D+G Y C A N  G   S+  ++ V V    
Sbjct: 170 SREE-DQGKYECVAENSMGTEHSKATNLYVKVRRVG 204

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 99.5 bits (248), Expect = 9e-26
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN--RRQKVFPNG 165
           +    P  +R   N     G      C   G P  SI W+K  +++     R   +   G
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 166 TLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP----FEFQPD--- 215
            + I  ++      D   Y C A N  G + S +  +++    K           P    
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 216 LHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           +  G    + C    G+P   I W+KN   +
Sbjct: 122 IEVGHTVLMTCKAI-GNPTPNIYWIKNQTKV 151

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  158 bits (401), Expect = 2e-48
 Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 31/223 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++I       ++   P +L C   G P P I W  DG P++ +                
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK-------------- 55

Query: 63  PLNRRQKVFPNGTLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVR 117
                +  F +G L         K+ D G YWC A N+ G++ S++  + +      F  
Sbjct: 56  --KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113

Query: 118 PMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPL--------NRRQKVFPNGTLL 168
              +     GE   L C P  G P  ++ W K    L          + R ++   G LL
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
           I NV+   D G Y C A N  G   S    + V V        
Sbjct: 174 ISNVEPI-DEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  104 bits (262), Expect = 9e-28
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIEN 171
            +    ++     EP  L C V G P  +I W K    V        +  F +G L    
Sbjct: 12  IIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR 71

Query: 172 VQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS---GDRAGVQ 225
                K+ D G YWC A N+ G++ S++  + + V      F  +P       G+ A ++
Sbjct: 72  TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD--DFRVEPKDTRVAKGETALLE 129

Query: 226 CLVTKGDPPLTISWLKNGLPILSAMGVGRKGNP 258
           C   KG P  T+ W+K+G+P+     +    + 
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  163 bits (414), Expect = 3e-48
 Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 27/246 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
              +Y+     +     ++L+ +          W      L    H              
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-------------- 94

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
                 +     +++I  + +    G Y     ++    +     +S+            
Sbjct: 95  ---FDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPY 149

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGV 180
                    L C     P   + W     Q    +     V      ++  +        
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG----TD 205

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
             C A N+ GR  ++   I +   P+    +    L  G+   ++C     +    ++W 
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQLF--LKVGEPLWIRCKAVHVNHGFGLTWE 263

Query: 241 KNGLPI 246
                +
Sbjct: 264 LENKAL 269

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  142 bits (358), Expect = 6e-40
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 22/210 (10%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           +        Q  L+ G P+ ++C A   N    ++W+L+   L    +   +     R  
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT- 285

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
                    +       + +V ++ D G Y C+++    +S      +++    F+    
Sbjct: 286 ---------MIRILFAFVSSVARN-DTGYYTCSSSKHPSQS----ALVTIVEKGFINATN 331

Query: 121 N---VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
           +         E          YP    TW    +  P  ++     NG  + +     H 
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQ 389

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
            G Y   A N      ++   +++    K 
Sbjct: 390 PGEYIFHAENDDA-QFTKMFTLNIRSGTKH 418

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  141 bits (357), Expect = 7e-40
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 38/242 (15%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
            +L CI+   P P + W L        + E                    V      ++ 
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEE-----------------SPAVVKKEEKVLH 199

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGC-PVAG 138
            +          C A N+ GR  ++ +            +  +    GEPL++ C  V  
Sbjct: 200 ELFG----TDIRCCARNELGRECTR-LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHV 254

Query: 139 YPIESITWQKGVQQLPLNRRQKV---------FPNGTLLIENVQKDHDRGVYWCTATNKQ 189
                +TW+   + L      ++                + +V ++ D G Y C+++   
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSKHP 313

Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILS 248
            +S      +++     I       D            V  K  P +  +W  +      
Sbjct: 314 SQS----ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC 369

Query: 249 AM 250
             
Sbjct: 370 EQ 371

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  113 bits (283), Expect = 3e-29
 Identities = 16/166 (9%), Positives = 39/166 (23%), Gaps = 10/166 (6%)

Query: 86  DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESIT 145
               Y   + + +         +    +  V     V       + L   V      S  
Sbjct: 26  KSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81

Query: 146 WQKGVQQLPLNRRQKVF--PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           W      L       +      +++I  + +    G Y     ++    +     +S+  
Sbjct: 82  WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRN 139

Query: 204 PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
                           ++  + C+     P   + W+       S 
Sbjct: 140 TLLYTL-RRPYFRKMENQDALVCISE-SVPEPIVEWVLCDSQGESC 183

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 45.4 bits (107), Expect = 9e-06
 Identities = 5/82 (6%), Positives = 18/82 (21%), Gaps = 6/82 (7%)

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236
               Y   + + +         +       +       ++       +Q LV      ++
Sbjct: 26  KSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAV-EVDVSASITLQVLVD-APGNIS 79

Query: 237 ISWLKNGLPILSAMGVGRKGNP 258
             W+     +        +   
Sbjct: 80  CLWVFKHSSLNCQPHFDLQNRG 101

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  158 bits (402), Expect = 1e-47
 Identities = 43/252 (17%), Positives = 83/252 (32%), Gaps = 36/252 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +     +  ++PG  V+L+C++ G+    + W     P      E+            
Sbjct: 5   PVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPES------------ 48

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
                    P  TL   N     + G Y CT        S+  +H+ V      +     
Sbjct: 49  ---------PGSTLTTRNATFK-NTGTYRCTELEDPMAGST-TIHLYVKDPAHSWNLLAQ 97

Query: 121 NVSAIAGEPLYLGCPVAGYPIE-SITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
            V+ + G+   L C +    ++ S++  + G +Q+         P    +I   +   D 
Sbjct: 98  EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKV-LDS 156

Query: 179 GVYWCTATNKQGRSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
             Y C        S+S  + + V      PP+I     +     G+ A + C  T  +  
Sbjct: 157 NTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG 216

Query: 235 LTISWLKNGLPI 246
             +   +    +
Sbjct: 217 FNVILKRGDTKL 228

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  120 bits (302), Expect = 6e-33
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 33/208 (15%)

Query: 12  QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            T+  G    L C+ T       +S   +G                     +        
Sbjct: 99  VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ------------------VLRKTVYFF 140

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAI 125
            P    +I   +   D   Y C        S+S  + + V                +  I
Sbjct: 141 SPWRGFIIRKAKV-LDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI 199

Query: 126 AGEPLYLGCPVAGYPI-ESITWQKGVQQLPLN-----RRQKVFPNGTLLIENVQKDHDRG 179
            GE   + C      +  ++  ++G  +L +      +         L +  V    D G
Sbjct: 200 RGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ-DAG 258

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKI 207
           +Y C A+N  G + +  ++  V      
Sbjct: 259 IYSCVASNDVG-TRTATMNFQVVESHHH 285

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 89.2 bits (221), Expect = 3e-21
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 10/139 (7%)

Query: 112 GAPFVRPMG-NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIE 170
            AP + P G  +    GE + L C   G    S+ W   +   P        P  TL   
Sbjct: 3   PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPIS--PYWTLDPESPGSTLTTR 56

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVT 229
           N     + G Y CT        S+  +H+ V  P        Q   +  G  A + CL+T
Sbjct: 57  NATFK-NTGTYRCTELEDPMAGST-TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT 114

Query: 230 KGDPPLTISWLKNGLPILS 248
                 ++S ++ G   + 
Sbjct: 115 DPALKDSVSLMREGGRQVL 133

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 63.4 bits (154), Expect = 6e-12
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 15/114 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQ+  +  +     G    + C AT            G               +  +   
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDT-------------KLEIPLN 233

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV 116
              +         L +  V    D G+Y C A+N  G + +  ++  V  +   
Sbjct: 234 SDFQDNYYKKVRALSLNAVDFQ-DAGIYSCVASNDVG-TRTATMNFQVVESHHH 285

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  158 bits (402), Expect = 1e-47
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 25/245 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPT-PHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
             +  G      C   G+     ISW   +G  L+ ++          R+  +  +    
Sbjct: 12  GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ---------RISVVWNDD--- 59

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGE 128
              + TL I N   D D G+Y C  T + G  S   V++ +     F           GE
Sbjct: 60  --DSSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE 116

Query: 129 PLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
              + C V      +I W+   + + L  + R  V  N  L I  ++K  D G Y C   
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT-DEGTYRCEGR 175

Query: 187 NKQGRS-SSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKNG 243
                  + +++ + V VPP +   +   +   + G    + C    G P  T+SW K+G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDG 234

Query: 244 LPILS 248
            PI +
Sbjct: 235 EPIEN 239

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  132 bits (334), Expect = 1e-37
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q  + G    + C    +  P I WK  G  +   +                 + R  V 
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK-----------------DVRFIVL 152

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFV---RPMGNVSAIAG 127
            N  L I  ++K  D G Y C          + +++ + V   P V   + + N +A  G
Sbjct: 153 SNNYLQIRGIKKT-DEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLG 211

Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLN-----RRQKVFPNGTLLIENVQKDHDRGVYW 182
           + + L C   G+P  +++W K  + +        +      +  L I NV K+ D   Y 
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN-DEAEYV 270

Query: 183 CTATNKQGRSSSQNVHISVTV 203
           C A NK G     ++H+ V  
Sbjct: 271 CIAENKAG-EQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 97.6 bits (243), Expect = 2e-24
 Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIE-SITWQK--GVQQLPLNRRQKVF----PNGTLLIENVQ 173
                 GE  +  C VAG   +  I+W    G +  P  +R  V      + TL I N  
Sbjct: 11  QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 70

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTK 230
            D D G+Y C  T + G  S   V++ +        F+  P       G+ A + C V  
Sbjct: 71  ID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLM---FKNAPTPQEFKEGEDAVIVCDVV- 125

Query: 231 GDPPLTISWLKNGLPILSA 249
              P TI W   G  ++  
Sbjct: 126 SSLPPTIIWKHKGRDVILK 144

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            Q     +  T   G  V+L C A G P P +SW  DG P+  +  +++  I        
Sbjct: 197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI-------- 248

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                     +  L I NV K+ D   Y C A NK G     ++H+ V  
Sbjct: 249 ------FSDDSSELTIRNVDKN-DEAEYVCIAENKAG-EQDASIHLKVFA 290

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  160 bits (406), Expect = 3e-47
 Identities = 45/267 (16%), Positives = 84/267 (31%), Gaps = 46/267 (17%)

Query: 8   KFIQQ-----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            F+++              ++C A+GNP P I W        GD                
Sbjct: 5   VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD---------------- 48

Query: 63  PLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FV 116
            +   +++  +G L+    +     ++    VY C A N+ G   S++VH+    A  + 
Sbjct: 49  -VPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 107

Query: 117 RPMGNVSAIAGEPLYLGCPV---AGYPIESITWQK-----GVQQLPLNRRQKVFPNGTLL 168
             +     I G    + C +       +E ++W              + +  V P+G L 
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV--------PPKIAPFEFQP-DLHSG 219
           I  V  +     Y C   ++    +  +      V         P+      +P +L   
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227

Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPI 246
               + C    G P  +  W K     
Sbjct: 228 HTISLLCPAQ-GFPAPSFRWYKFIEGT 253

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  152 bits (386), Expect = 3e-44
 Identities = 52/259 (20%), Positives = 84/259 (32%), Gaps = 35/259 (13%)

Query: 12  QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
           + +  G    +KC+      +    +SW  D                         + + 
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN--------------YFPGAEYDGKY 158

Query: 69  KVFPNGTLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVTGAP--------FVRP 118
            V P+G L I  V  +     Y C   ++       S      V   P            
Sbjct: 159 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK-----VFPNGTLLIENVQ 173
              +  +    + L CP  G+P  S  W K ++     +           +GTL+I++  
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP 233
              D G Y C   N  G  S +   ++VT P           +  G  A   C  T G+P
Sbjct: 279 -VEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT-GNP 335

Query: 234 PLTISWLKNGLPILSAMGV 252
             T+SW+K+G  I  +  V
Sbjct: 336 IKTVSWMKDGKAIGHSESV 354

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  128 bits (324), Expect = 3e-35
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 26/191 (13%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             L     +SL C A G P P   W          +              + LN R K  
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQA-------------VVLNDRVKQV 268

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPL 130
            +GTL+I++     D G Y C   N  G  S +   ++VT            +   G P 
Sbjct: 269 -SGTLIIKDAV-VEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPA 325

Query: 131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
              C   G PI++++W K       + +        L IE+V+K+ D+G+Y C   N + 
Sbjct: 326 VFTCQYTGNPIKTVSWMK-------DGKAIGHSESVLRIESVKKE-DKGMYQCFVRNDRE 377

Query: 191 RSSSQNVHISV 201
            + + +  + +
Sbjct: 378 SAEA-SAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 93.5 bits (232), Expect = 3e-22
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQK--GVQQLPLNRRQKVFPNGTLLIENVQ-- 173
           P   +         + C  +G P+  I W +  G     +   +++  +G L+    +  
Sbjct: 10  PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAE 69

Query: 174 ---KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTK 230
              ++    VY C A N+ G   S++VH+   V         +  +  G+ A ++CL+  
Sbjct: 70  DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129

Query: 231 --GDPPLTISWLKNGLPIL 247
              D    +SW  +     
Sbjct: 130 FVADFVEVVSWHTDEEENY 148

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 28/110 (25%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           +          QT+  G P    C  TGNP   +SW  DG  +                 
Sbjct: 306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------------- 351

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                          L IE+V+K+ D+G+Y C   N +  + + +  + +
Sbjct: 352 ------------ESVLRIESVKKE-DKGMYQCFVRNDRESAEA-SAELKL 387

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  158 bits (400), Expect = 2e-46
 Identities = 56/256 (21%), Positives = 76/256 (29%), Gaps = 37/256 (14%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           +         V+L C A  NP     WK++G  L                        + 
Sbjct: 15  LFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS------------------RY 56

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAG 127
               G L+I N  K  D G Y C ATN +G   S+   +               V    G
Sbjct: 57  RLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEG 116

Query: 128 EPLYLGC-PVAGYPIESITWQKGVQQLPL---NRRQKVFPNGTLLIENVQKDHDRGVYWC 183
             +   C P   YP  S  W        +    RR      G L I   +   D G Y C
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSC 175

Query: 184 TATNKQG----RSSSQNVHISVTV-------PPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232
            AT+          S+   +S+         P   A F       +G    ++C    G+
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF-GN 234

Query: 233 PPLTISWLKNGLPILS 248
           P   I W K      S
Sbjct: 235 PVPQIKWRKLDGSQTS 250

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  151 bits (382), Expect = 1e-43
 Identities = 53/251 (21%), Positives = 79/251 (31%), Gaps = 36/251 (14%)

Query: 11  QQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
              +  G  V   C      P     W L+ +P                       RR  
Sbjct: 110 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD----------------GRRFV 153

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQG----RSSSQNVHISVTGAP--------FVR 117
               G L I   +   D G Y C AT+          S+   +S+              +
Sbjct: 154 SQTTGNLYIAKTEAS-DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
              +  A+ G+ + L C   G P+  I W+K                  L I+NV    D
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS---SEPLLHIQNVD-FED 268

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
            G Y C A N +GR + Q   I +   P         +   G      C+ + G P   +
Sbjct: 269 EGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS-GKPRPAV 326

Query: 238 SWLKNGLPILS 248
            WL++G P+ S
Sbjct: 327 RWLRDGQPLAS 337

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  146 bits (371), Expect = 4e-42
 Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 29/201 (14%)

Query: 3   PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P +  KF        G  V+L+C A GNP P I W+                        
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ------------------ 248

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
                 + +     L I+NV    D G Y C A N +GR + Q   I +   P ++  + 
Sbjct: 249 ----TSKWLSSEPLLHIQNVD-FEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVIT 302

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           +  A  G  L   C  +G P  ++ W +  Q L    R +V   G L    +  + D G+
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLE-DSGM 360

Query: 181 YWCTATNKQGRSSSQNVHISV 201
           Y C A NK G   + +  ++V
Sbjct: 361 YQCVAENKHGTVYA-SAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  101 bits (254), Expect = 2e-25
 Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGTLLIENVQKDHDRGVYWCT 184
           A E + L C     P  +  W+    +L +    +     G L+I N  K  D G Y C 
Sbjct: 21  AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV 80

Query: 185 ATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
           ATN +G   S+   +      + +  E  P  +  G      C      P L+  WL N 
Sbjct: 81  ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140

Query: 244 LPILSAMGVGR 254
            P        R
Sbjct: 141 FPNFIPADGRR 151

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  155 bits (393), Expect = 2e-46
 Identities = 41/262 (15%), Positives = 71/262 (27%), Gaps = 38/262 (14%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P +     +  ++ G  +SL CI        + W    Y                   
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFN----------------- 49

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
                           + E  +     G Y C+ +N    S    +++ V          
Sbjct: 50  ------EMVENKKNEWIQEKAEAT-RTGTYTCSNSNGLTSS----IYVFVRDPAKLFLVG 98

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
             +         + CP+    +   +  +   + LP +      P   + I+NV++ + R
Sbjct: 99  LPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR 158

Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD----LHSGDRAGVQCLVTKGDPP 234
               C A        S    + V    K  P    P+    L  GD   V C +      
Sbjct: 159 LCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218

Query: 235 LTISWLKNGLPILSAMGVGRKG 256
           +   WLK          V    
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNS 240

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  115 bits (290), Expect = 4e-31
 Identities = 38/216 (17%), Positives = 64/216 (29%), Gaps = 38/216 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQ 61
            +L    +    +      ++C  T       S  + DG  L                  
Sbjct: 92  AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL------------------ 133

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-- 119
            P +      P   + I+NV++ + R    C A        S    + V  A    P+  
Sbjct: 134 -PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVS 192

Query: 120 ---GNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVF----------PNG 165
               +     G+   + C +       +  W K   Q     + K               
Sbjct: 193 VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQE 252

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
           TL I + + D D GV+ C A N  G S++    + V
Sbjct: 253 TLTISSARVD-DSGVFMCYANNTFG-SANVTTTLKV 286

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  158 bits (401), Expect = 2e-45
 Identities = 42/255 (16%), Positives = 77/255 (30%), Gaps = 36/255 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P +        L+ G   ++ C      +  + +WK +          N    G      
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG------ 265

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-- 119
                        TL I + + + D GV+ C A N  G S++    + V    F+     
Sbjct: 266 -----DFNYERQATLTISSARVN-DSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPM 318

Query: 120 --GNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLN--------RRQKVFPNGTLL 168
               V    GE + L      +P  E   W    +                 +     L 
Sbjct: 319 INTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELH 378

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV 228
           +  ++   + G Y    +N    +++   ++ V   P+I  ++            +QC+ 
Sbjct: 379 LTRLKGT-EGGTYTFLVSNSDV-NAAIAFNVYVNTKPEILTYD------RLVNGMLQCVA 430

Query: 229 TKGDPPLTISWLKNG 243
             G P  TI W    
Sbjct: 431 A-GFPEPTIDWYFCP 444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  154 bits (391), Expect = 4e-44
 Identities = 31/250 (12%), Positives = 73/250 (29%), Gaps = 39/250 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +        ++ G  + L C   G     + W  +                       
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILD-------------------- 72

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
                         + E  +   + G Y CT  +    S    +++ V           +
Sbjct: 73  ----ETNENKQNEWITEKAEAT-NTGKYTCTNKHGLSNS----IYVFVRDPAKLFLVDRS 123

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGV-QQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           +         + CP+    + + + +    + LP + R    P   ++I++V++ + R  
Sbjct: 124 LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183

Query: 181 YWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236
             C+   +     S+   + V       P ++  +    L  G+   V C +      + 
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243

Query: 237 ISWLKNGLPI 246
            +W +     
Sbjct: 244 STWKRENSQT 253

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  154 bits (391), Expect = 4e-44
 Identities = 40/263 (15%), Positives = 77/263 (29%), Gaps = 37/263 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            +L         +      ++C  T     + S K                      + L
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ------------------GKPL 156

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVR 117
           P + R    P   ++I++V++ + R    C+   +     S+   + V  A         
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV 216

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVF--------PNGTLL 168
              +     GE   + C +         TW++   Q  L  +   +           TL 
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQ 225
           I + + + D GV+ C A N  G S++    + V     I  F        ++ G+   + 
Sbjct: 277 ISSARVN-DSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334

Query: 226 CLVTKGDPPLTISWLKNGLPILS 248
                   P    W+        
Sbjct: 335 VEYEAFPKPEHQQWIYMNRTFTD 357

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  117 bits (294), Expect = 2e-30
 Identities = 30/211 (14%), Positives = 55/211 (26%), Gaps = 34/211 (16%)

Query: 12  QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +  G  V L       P P H  W            +                    +
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN-----------ESNI 371

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
                L +  ++   + G Y    +N    +++   ++ V   P +     ++       
Sbjct: 372 RYVSELHLTRLKGT-EGGTYTFLVSNSDV-NAAIAFNVYVNTKPEI-----LTYDRLVNG 424

Query: 131 YLGCPVAGYPIESITWQKGVQQLPL-----------NRRQKVFPNGTLLIE---NVQKDH 176
            L C  AG+P  +I W                           P G L+++   +     
Sbjct: 425 MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
             G   C A N  G  +S   + +     K 
Sbjct: 485 HNGTVECKAYNDVG-KTSAYFNFAFKGNNKE 514

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
           T        L+C+A G P P I W        G        +    VQ L  +       
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCP----GTEQRCSASVLPVDVQTLNSSGPPFGKL 472

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
                I++       G   C A N  G  +S   + +  G    +
Sbjct: 473 VVQSSIDSSAFK-HNGTVECKAYNDVG-KTSAYFNFAFKGNNKEQ 515

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 6/75 (8%)

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
           V       + G SS  +V      PP I P +    +  GD   + C          + W
Sbjct: 13  VLLLLLRVQTG-SSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-----FVKW 66

Query: 240 LKNGLPILSAMGVGR 254
               L   +      
Sbjct: 67  TFEILDETNENKQNE 81

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  149 bits (377), Expect = 6e-45
 Identities = 46/213 (21%), Positives = 77/213 (36%), Gaps = 32/213 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +  +    T + G    L C   G P P I W   G                   ++L
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFG-------------------KEL 48

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTGAPFV 116
             +R+ K+  +G   TL +   +++ D GVY C ATN+ G   +     +  +    P  
Sbjct: 49  IQSRKYKMSSDGRTHTLTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107

Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQ 173
                     G  L L     G P+ ++TW  G + L  +    +        L+++NVQ
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQ 167

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
           +    G Y    +N  G   +    + V +  K
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDA---ILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  110 bits (277), Expect = 4e-30
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
           +++G      + M +V+   GE   L C + G P+  I W +  ++L  +R+ K+  +G 
Sbjct: 2   AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGR 61

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL---HSGD 220
             TL +   +++ D GVY C ATN+ G   + +  + +   P+  P     +      G 
Sbjct: 62  THTLTVMTEEQE-DEGVYTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGS 119

Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
              +  +   G P   ++W      +
Sbjct: 120 TLRLHVMYI-GRPVPAMTWFHGQKLL 144

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  155 bits (392), Expect = 4e-44
 Identities = 37/237 (15%), Positives = 75/237 (31%), Gaps = 31/237 (13%)

Query: 11  QQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           Q  L+ G P+ ++C A   N    ++W+L+   L    +   +     R           
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI-------- 287

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM---GNVSAIA 126
                   + +V ++ D G Y C+++    +S      +++    F+       +     
Sbjct: 288 --RILFAFVSSVARN-DTGYYTCSSSKHPSQS----ALVTIVEKGFINATNSSEDYEIDQ 340

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
            E          YP    TW    +  P  ++       ++      K H  G Y   A 
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN-GYSISKFCNHK-HQPGEYIFHAE 398

Query: 187 NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
           N      ++   +++   P++        L     +   C    G P  + +W K  
Sbjct: 399 NDDA-QFTKMFTLNIRRKPQV--------LAEASASQASCFSD-GYPLPSWTWKKCS 445

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  153 bits (388), Expect = 1e-43
 Identities = 28/247 (11%), Positives = 63/247 (25%), Gaps = 23/247 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
              +Y+     +     ++L+ +          W      L    H +    G       
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG------- 101

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
                       +++I  + +    G Y     ++    +     +S+            
Sbjct: 102 ----------VVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPY 149

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
                    L C     P   + W            ++  P      E V  +       
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVL--CDSQGESCKEESPAVVKKEEKVLHELFGTDIR 207

Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
           C A N+ GR  ++   I +   P+    +    L  G+   ++C     +    ++W   
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQL--FLKVGEPLWIRCKAVHVNHGFGLTWELE 265

Query: 243 GLPILSA 249
              +   
Sbjct: 266 NKALEEG 272

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  144 bits (363), Expect = 5e-40
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 40/239 (16%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
            +L CI+   P P + W L        + E                    V      ++ 
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEE-----------------SPAVVKKEEKVLH 199

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY 139
            +          C A N+ GR  ++   I +   P    +  +    GEPL++ C     
Sbjct: 200 EL----FGTDIRCCARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHV 254

Query: 140 PIE-SITWQKGVQQLPLNRRQK---------VFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
                +TW+   + L      +         +       + +V ++ D G Y C+++   
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSKHP 313

Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
            +S      +++     I       D      +         K  P +  +W  +    
Sbjct: 314 SQS----ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSF 367

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  108 bits (270), Expect = 4e-27
 Identities = 18/167 (10%), Positives = 42/167 (25%), Gaps = 12/167 (7%)

Query: 86  DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESIT 145
               Y   + + +         +    +  V     V       + L   V      S  
Sbjct: 26  KSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81

Query: 146 WQKGVQQLPLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           W      L       +   G  +++I  + +    G Y     ++    +     +S+  
Sbjct: 82  WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRN 139

Query: 204 PPKIAPFEFQPDLH-SGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
                    +P      ++  + C+     P   + W+       S 
Sbjct: 140 TLLY--TLRRPYFRKMENQDALVCISE-SVPEPIVEWVLCDSQGESC 183

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  105 bits (264), Expect = 3e-26
 Identities = 29/212 (13%), Positives = 52/212 (24%), Gaps = 45/212 (21%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +               P    +W         ++    N                   
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN------------------- 376

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
              ++      K H  G Y   A N      ++   +++   P V               
Sbjct: 377 -GYSISKFCNHK-HQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVLA-------EASASQ 426

Query: 132 LGCPVAGYPIESITWQK--------------GVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
             C   GYP+ S TW+K              GV     NR+       +  +   +    
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAI-K 485

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
             +  C A N  G +S + + ++   P     
Sbjct: 486 GFLVKCCAYNSLG-TSCETILLNSPGPFPFIQ 516

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 8/115 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q L         C + G P P  +WK           E    +   +  +    +     
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQ----- 471

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA-PFVRPMGNVSAI 125
              +    N+ +     +  C A N  G +S + + ++  G  PF++  G     
Sbjct: 472 -WVSSSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPGPFPFIQDGGTKHHH 524

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  145 bits (368), Expect = 1e-43
 Identities = 48/221 (21%), Positives = 75/221 (33%), Gaps = 37/221 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+     + QT   G   S  C ATG+P P I W   G  ++  R               
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQR--------------- 51

Query: 63  PLNRRQKVFPNGT---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----- 114
                   F +G+   L I+ ++   D  +Y C A+N  G   S +  ++V         
Sbjct: 52  ---FEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRG 107

Query: 115 ---FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN------RRQKVFPNG 165
                               + C  +G P   ITW K    +  +      ++ +    G
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
            L IE  ++  D+G Y C ATN  G   S   ++ V     
Sbjct: 168 ALQIEQSEES-DQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  104 bits (260), Expect = 2e-27
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGT 166
           +    P F R   + + ++G      C   G P   I W K  +++   R + + F +G+
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 167 ---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP----FEFQPDLHS- 218
              L I+ ++   D  +Y C A+N  G   S +  ++V    +I       +  P L   
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120

Query: 219 --GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
                A + C  + G+P   I+W K+ LP+ ++   GR
Sbjct: 121 ERTRTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGR 157

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  148 bits (374), Expect = 2e-43
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 36/252 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +     +  ++PG  V+L+C+  G+    + W                          
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP---------------------S 39

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
           P         +  L   N     + G Y CT        S+  +H+ V      +     
Sbjct: 40  PHWTLYSDGSSSILSTNNATFQ-NTGTYRCTEPGDPLGGSA-AIHLYVKDPARPWNVLAQ 97

Query: 121 NVSAIAGEPLYLGCPVAGYPIE-SITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
            V     +   L C +    +E  ++  +   + L  +      P     I   +     
Sbjct: 98  EVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKF-IQS 156

Query: 179 GVYWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
             Y C+A     +  S ++ + V      PP +     +     G+ A + C  +  D  
Sbjct: 157 QDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN 216

Query: 235 LTISWLKNGLPI 246
             +    N   +
Sbjct: 217 FDVFLQHNNTKL 228

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  120 bits (301), Expect = 1e-32
 Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 33/208 (15%)

Query: 12  QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +       L C+ T       +S                        + L  +     
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVR------------------GRPLMRHTNYSF 140

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-----GNVSAI 125
            P     I   +       Y C+A     +  S ++ + V       P        +  I
Sbjct: 141 SPWHGFTIHRAKF-IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199

Query: 126 AGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPN-----GTLLIENVQKDHDRG 179
            GE   + C  +   +   +  Q    +L + ++     N      TL ++ V      G
Sbjct: 200 RGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ-HAG 258

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKI 207
            Y C A+N QG   S ++   V      
Sbjct: 259 NYSCVASNVQG-KHSTSMFFRVVESAGN 285

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 84.6 bits (209), Expect = 2e-19
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 10/140 (7%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
               +  +    G  + L C   G    S+ W       P         +  L   N   
Sbjct: 7   IEPSVPELVVKPGATVTLRCVGNG----SVEWDG--PPSPHWTLYSDGSSSILSTNNATF 60

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDP 233
             + G Y CT        S+  +H+ V  P +      Q   +     A + CL+T    
Sbjct: 61  Q-NTGTYRCTEPGDPLGGSA-AIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118

Query: 234 PLTISWLK-NGLPILSAMGV 252
              +S ++  G P++     
Sbjct: 119 EAGVSLVRVRGRPLMRHTNY 138

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  145 bits (366), Expect = 2e-43
 Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 17/207 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
              +      T   G   +L+C        P + W  DG  L                  
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQ-------TQVP 55

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
           L  + +        L I ++Q   D G Y C          SQ  ++ + G P F+    
Sbjct: 56  LGEDEQDDWIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE 114

Query: 121 NVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
           + +  A  P  L C   G P    + W +    +PL       P  +L +  +       
Sbjct: 115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQD--AVPLATAPGHGPQRSLHVPGLN---KTS 169

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPK 206
            + C A N +G ++S+   I+V +P +
Sbjct: 170 SFSCEAHNAKGVTTSRTATITV-LPQQ 195

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 93.4 bits (232), Expect = 1e-23
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 22/161 (13%)

Query: 114 PFVRPMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPL------------NRRQK 160
           PFV   GN++   G    L C          + W +  Q L L            + +  
Sbjct: 4   PFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63

Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLH 217
                 L I ++Q   D G Y C          SQ  ++ +   P    F  +P    + 
Sbjct: 64  WIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEGLPY---FLEEPEDRTVA 119

Query: 218 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSAMGVGRKGN 257
           +     + C    G P P+ + WL++ +P+ +A G G + +
Sbjct: 120 ANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQRS 159

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  144 bits (364), Expect = 3e-43
 Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 25/197 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q  + G    + C  + +P P +SW      +                     + R  + 
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-----------------DNRFAML 54

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMGNVSAIAG 127
            N  L I N+ K  D G+Y C    +          I +   P      +   N +A  G
Sbjct: 55  ANNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 113

Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVYWCTAT 186
           E +   C  +G P  +I+W +  + +  N +  +   N  L + N+    D G Y C AT
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS-DGGPYVCRAT 172

Query: 187 NKQGRSSSQNVHISVTV 203
           NK G    +   + V V
Sbjct: 173 NKAG-EDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  105 bits (264), Expect = 3e-28
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENV 172
           F   +       GE   + C V+  P  +++W    +++    + R  +  N  L I N+
Sbjct: 5   FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNI 64

Query: 173 QKDHDRGVYWCTATNK-QGRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVT 229
            K  D G+Y C    + +G    +++ + V VPP I+  +   +     G+     C  +
Sbjct: 65  NKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123

Query: 230 KGDPPLTISWLKNGLPI 246
            G P   ISW +NG  I
Sbjct: 124 -GSPEPAISWFRNGKLI 139

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
              +  K    T + G  ++  C A+G+P P ISW  +G  +  +               
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-------------- 143

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
               +      N  L + N+    D G Y C ATNK G    +   + V
Sbjct: 144 ----KYILKGSNTELTVRNIINS-DGGPYVCRATNKAG-EDEKQAFLQV 186

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  145 bits (367), Expect = 5e-42
 Identities = 64/285 (22%), Positives = 85/285 (29%), Gaps = 60/285 (21%)

Query: 3   PQLIYKFIQQ-TLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           P       +Q     G  V L C    G P     W  DG                    
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG-------------------T 48

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI------------ 108
            L  + R  V     L + N   + D G Y C     Q      +V +            
Sbjct: 49  GLVPSERVLV-GPQRLQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDG 106

Query: 109 --------SVTGAP-FVRPMG----NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL 155
                     TGAP + RP       ++  A   +   CP AG P  SI+W K  ++   
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG 166

Query: 156 NRRQK----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
             R           +L++E+V    DRG Y C   NK G S  Q   + V       P  
Sbjct: 167 EHRIGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPIL 224

Query: 212 FQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
                 +     G      C V   D    I WLK+     S +G
Sbjct: 225 QAGLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVG 268

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  129 bits (325), Expect = 7e-36
 Identities = 48/217 (22%), Positives = 68/217 (31%), Gaps = 41/217 (18%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V  +C A GNPTP ISW  +G    G+                 +   +   
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH---------------RIGGIKLRH 177

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------FVRPMGNVSAI 125
              +L++E+V    DRG Y C   NK G S  Q   + V                N +A+
Sbjct: 178 QQWSLVMESVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAV 235

Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQL----------------PLNRRQKVFPNGTLLI 169
            G  +   C V       I W K V+                               L +
Sbjct: 236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSL 295

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
            NV  + D G Y C A N  G  S  +  + V    +
Sbjct: 296 HNVTFE-DAGEYTCLAGNSIG-FSHHSAWLVVLPAEE 330

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 92.4 bits (229), Expect = 4e-22
 Identities = 34/166 (20%), Positives = 51/166 (30%), Gaps = 28/166 (16%)

Query: 114 PFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENV 172
           P       +   +G+ + L CP   G P+    W K    L  + R  V     L + N 
Sbjct: 10  PEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLNA 68

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTV---------------------PPKIAPFE 211
             + D G Y C     Q      +V ++                        P    P  
Sbjct: 69  SHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127

Query: 212 FQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
               L +    +    +C    G+P  +ISWLKNG        +G 
Sbjct: 128 MDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGG 172

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 7/113 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
                    QT   G  V   C    +  PHI W             +    G   V  L
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD----GTPYVTVL 278

Query: 63  PL-NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                         L + NV  + D G Y C A N  G  S  +  + V  A 
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFE-DAGEYTCLAGNSIG-FSHHSAWLVVLPAE 329

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  141 bits (356), Expect = 6e-42
 Identities = 45/206 (21%), Positives = 69/206 (33%), Gaps = 22/206 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISW-KLDGYPLAGDRHENKNRIGEARVQ 60
            Q+     Q  +  G      C   G+     ISW   +G  L+ ++          R+ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ---------RIS 53

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
            +  +       + TL I N   D D G+Y C  T + G  S   V++ +     F    
Sbjct: 54  VVWNDDD-----SSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDHD 177
                  GE   + C V      +I W+   + + L  + R  V  N  L I  ++K  D
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT-D 166

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTV 203
            G Y C               I V V
Sbjct: 167 EGTYRCEGRILAR-GEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  100 bits (250), Expect = 3e-26
 Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 15/143 (10%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQK--GVQQLPLNRRQKVFP----NGTL 167
                       GE  +  C VAG   +  I+W    G +  P  +R  V      + TL
Sbjct: 5   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGV 224
            I N   D D G+Y C  T + G  S   V++ +        F+  P   +   G+ A +
Sbjct: 65  TIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLM---FKNAPTPQEFKEGEDAVI 120

Query: 225 QCLVTKGDPPLTISWLKNGLPIL 247
            C V     P TI W   G  ++
Sbjct: 121 VCDVV-SSLPPTIIWKHKGRDVI 142

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 21/111 (18%), Positives = 28/111 (25%), Gaps = 19/111 (17%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
                      Q  + G    + C    +  P I WK  G  +                 
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV----------------- 141

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
            L  + R  V  N  L I  ++K  D G Y C               I V 
Sbjct: 142 ILKKDVRFIVLSNNYLQIRGIKKT-DEGTYRCEGRILAR-GEINFKDIQVI 190

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  138 bits (349), Expect = 4e-41
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            +L+   ++ T+  G PV L C   G   P I W  DG  +            +      
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH----- 57

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
                      G L +++V++  D G YWC   +      SQ V ++V G P F     +
Sbjct: 58  ---------WIGFLSLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD 107

Query: 122 VSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           ++     P  L C   G P   +I W +G  ++              ++          +
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP------APSPSVLNVTGVT-QSTM 160

Query: 181 YWCTATNKQGRSSSQNVHISV 201
           + C A N +G +SS+   + +
Sbjct: 161 FSCEAHNLKGLASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  104 bits (260), Expect = 8e-28
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-----PNGTLLI 169
            +     ++   G+P+ L C V G     I W K    +    +  +        G L +
Sbjct: 5   LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 64

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQC 226
           ++V++  D G YWC   +      SQ V ++V   P    F  +P    +       + C
Sbjct: 65  KSVERS-DAGRYWCQVEDGGETEISQPVWLTVEGVPF---FTVEPKDLAVPPNAPFQLSC 120

Query: 227 LVTKGDP-PLTISWLKNGLPILSAM 250
               G P P+TI W +    I    
Sbjct: 121 EAV-GPPEPVTIVWWRGTTKIGGPA 144

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  138 bits (349), Expect = 7e-41
 Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 32/212 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    +     ++     +L C  TG+P P + W   G  +  D                
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---------------- 48

Query: 63  PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------ 114
            L  R + F  G   L+I +V  D D  VY   ATN+ G  S     + V          
Sbjct: 49  GLKYRIQEFKGGYHQLIIASVTDD-DATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPK 106

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT----LLIE 170
            +  MG V A+ GE + +  P +G P   ITWQKG   +  N   +V    +    +   
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPN 166

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            V++  D G Y   A N+ G      V + V 
Sbjct: 167 GVERK-DAGFYVVCAKNRFGIDQK-TVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  100 bits (252), Expect = 2e-26
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN---RRQKVFPNG--T 166
           AP F   + N++        L C V G+P   + W +  +++  +    R + F  G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDR 221
           L+I +V  D D  VY   ATN+ G  S     + V VP KI   +    + +     G+ 
Sbjct: 64  LIIASVTDD-DATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 222 AGVQCLVTKGDPPLTISWLKNGLPI 246
             ++   + G P   I+W K    I
Sbjct: 122 VSIKIPFS-GKPDPVITWQKGQDLI 145

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  135 bits (342), Expect = 1e-39
 Identities = 39/221 (17%), Positives = 58/221 (26%), Gaps = 49/221 (22%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            ++      + +  G  V L C ATG+P     W      +                   
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------------- 63

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------- 114
                        L+   V    D G Y C   N      SQ   + V   P        
Sbjct: 64  ----------TSELIFNAVHVK-DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112

Query: 115 --------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT 166
                         +   + G  L L C   G PI    W K    L    +        
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------KL 166

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
            ++  V  +  +G YWC   N +    S+ V I +     +
Sbjct: 167 YMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 206

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 99.6 bits (248), Expect = 1e-25
 Identities = 35/169 (20%), Positives = 51/169 (30%), Gaps = 26/169 (15%)

Query: 99  GRSSSQNVHISVT--GAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL 155
           G S   + H S              + + +AG+ + L C   G+P     W K  +++P 
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61

Query: 156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD 215
                      L+   V    D G Y C   N      SQ   + V   P+         
Sbjct: 62  GN------TSELIFNAVHVK-DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114

Query: 216 LHS---------------GDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
             S               G    +QC+   G P     W KN LP+   
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHE 162

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 26/117 (22%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q L PG  + L+C+A G+P PH  W  +  PL  +                         
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------------------------ 163

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGE 128
                ++  V  +  +G YWC   N +    S+ V I +     +    N      +
Sbjct: 164 -KKLYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  136 bits (343), Expect = 1e-38
 Identities = 47/251 (18%), Positives = 77/251 (30%), Gaps = 28/251 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
                G P S KC    +      +      +  ++             + PLNRR    
Sbjct: 39  DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGK---------TRRPLNRRV--- 86

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPL 130
            NG L I N   +     Y CT T K G      V   +   P   P    +       +
Sbjct: 87  KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146

Query: 131 YLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
            L C +       +ITW K  Q+L ++  +       L+I N + + D G Y C      
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELE-DSGRYDCYVHYDD 205

Query: 190 GRSSSQNVHISVTVPPKIAPFEFQP---------DLHSGDRAGVQCLVT---KGDPPLTI 237
                 ++ +S      + P +            ++  G+ A + C           + I
Sbjct: 206 V-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264

Query: 238 SWLKNGLPILS 248
            W      I+ 
Sbjct: 265 DWENPSGWIIG 275

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  124 bits (313), Expect = 3e-34
 Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 13/173 (7%)

Query: 86  DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIES-- 143
           D         NK   +        +  +       N  A  GEP    CP     + S  
Sbjct: 3   DIENEITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHR 62

Query: 144 -------ITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195
                  + W+K G  + PLNRR     NG L I N   +     Y CT T K G     
Sbjct: 63  YNDKDNVVNWEKIGKTRRPLNRRV---KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG 119

Query: 196 NVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
            V   +  PP   P  ++   H      + C +        I+W KN   ++ 
Sbjct: 120 IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII 172

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  102 bits (255), Expect = 6e-26
 Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 45/223 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P  I +  +        + L C I       +I+W  +                    Q+
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN-------------------QE 169

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVT------G 112
           L ++  +       L+I N + + D G Y C       R  +    +    +T       
Sbjct: 170 LIIDGTKYSQSGQNLIIHNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228

Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPI----ESITWQKGVQQLPLNRRQKV------- 161
              +     ++   GEP  + C      +      I W+     +               
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288

Query: 162 -FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
                TL  ENV +++    Y C   N       + +  +V +
Sbjct: 289 GITEATLYFENVTEEYIGNTYTCRGHNYYF---DKTLTTTVVL 328

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  131 bits (332), Expect = 2e-38
 Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 26/201 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P          +  G   + +   +G P P +SW  DG  ++                  
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS---------------- 49

Query: 63  PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTGAP--FVR 117
            L   Q  F +G   L I  V K  + G Y   ATN  G+++S   + +    AP  FV+
Sbjct: 50  TLPGVQISFSDGRAKLTIPAVTKA-NSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ 108

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQK 174
            + +++   G  + L   V G P   + + +   ++  +   ++   G   +LLI     
Sbjct: 109 RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP 168

Query: 175 DHDRGVYWCTATNKQGRSSSQ 195
           + D G Y   ATN  GR++S 
Sbjct: 169 E-DSGTYSVNATNSVGRATST 188

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 94.8 bits (236), Expect = 4e-24
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 16/147 (10%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK---VFPNG--T 166
           AP F +P+ +V  + G        ++G+P+  ++W +  Q +  +        F +G   
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDR 221
           L I  V K  + G Y   ATN  G+++S      + V  + AP  F   L S     G +
Sbjct: 65  LTIPAVTKA-NSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQ 120

Query: 222 AGVQCLVTKGDPPLTISWLKNGLPILS 248
             +Q  VT G P   + + ++G  I S
Sbjct: 121 VRLQVRVT-GIPTPVVKFYRDGAEIQS 146

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  132 bits (332), Expect = 3e-38
 Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 24/206 (11%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +  +    PV L C  +G  +P + WK D          N                 +  
Sbjct: 13  EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS--------YEDRVT 64

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAP-FVRPMGNVSAIAGE 128
           F    +  ++V ++ D G Y C  + + G S     V + V   P         SA  G 
Sbjct: 65  FLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123

Query: 129 PLYLGCPVA-GYPIESITWQKGVQQLPLNRRQ----------KVFPNGTLLIENVQKDHD 177
              L C    G P    TW K    +P N +                G L+ + +    D
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS-D 182

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTV 203
            G Y C A N  G +   +  + +  
Sbjct: 183 TGEYSCEARNGYG-TPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  114 bits (287), Expect = 2e-31
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 111 TGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK--------- 160
            G+  V      V      P+ L C  +G+    + W+                      
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 161 --VFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDLH 217
              F    +  ++V ++ D G Y C  + + G S     V + V VPP            
Sbjct: 62  RVTFLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120

Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
            G+RA + C    G PP   +W K+G+ + +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT 151

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  131 bits (331), Expect = 5e-38
 Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 25/208 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     + L C  +G  +P + WK            N                 +  F
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAP--------YADRVTF 62

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTGAP-FVRPMGNVSAIAGEP 129
            +  +   +V +  D G Y C  + + G++  + ++H++V   P         S   G  
Sbjct: 63  SSSGITFSSVTRK-DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 130 LYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFP-----------NGTLLIENVQKDHD 177
             L C    G P    +W K    +     +K              +G L+ + V    D
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF-D 180

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPP 205
            G Y+C A N  G ++ ++    +    
Sbjct: 181 SGEYYCQAQNGYG-TAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  116 bits (292), Expect = 3e-32
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG-----------VQQLPLNRRQKVF 162
                  +V     E + L C  +G+    + W+              Q       +  F
Sbjct: 3   SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62

Query: 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTVPPKIAPFEFQPDLHSGDR 221
            +  +   +V +  D G Y C  + + G++  + ++H++V VPP          +  G+R
Sbjct: 63  SSSGITFSSVTRK-DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 222 AGVQCLVTKGDPPLTISWLKNGLPILSA 249
           A + C    G PP   SW K+G+ +L+A
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTA 149

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  132 bits (334), Expect = 4e-37
 Identities = 50/280 (17%), Positives = 85/280 (30%), Gaps = 47/280 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKC-------IATGNPTPHISWKLDGYPLAGDRHENKNRIG 55
                 + ++    G PV+L+C        A+ +P  +++W  +         E + R+ 
Sbjct: 19  RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP-GEEETRM- 76

Query: 56  EARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP- 114
                            +G L +    ++ D G Y CT  N        ++ + V     
Sbjct: 77  --------------WAQDGALWLLPALQE-DSGTYVCTTRNASY-CDKMSIELRVFENTD 120

Query: 115 --FVRPMGNVSAIAGEPLYLGCP-----VAGYPIESITWQKGVQQLPL--NRRQKVFPNG 165
                              L CP             I W K    L     +   V    
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDLHS---- 218
            LL+ +V  + D G Y C  T        + ++++ + +    +         L +    
Sbjct: 181 HLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239

Query: 219 -GDRAGVQCLV--TKGDPPLTISW-LKNGLPILSAMGVGR 254
            G R  + C V    G P  T+ W   N   I SA   GR
Sbjct: 240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGR 279

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  103 bits (257), Expect = 4e-26
 Identities = 36/228 (15%), Positives = 63/228 (27%), Gaps = 54/228 (23%)

Query: 11  QQTLQPGPPVSLKC-----IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
            Q L       L C              I W  D   L  D                   
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN-----------------E 171

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTGAP------FV 116
           +   V     LL+ +V  + D G Y C  T        + ++++ + +           +
Sbjct: 172 KFLSVRGTTHLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230

Query: 117 RPMGNVSAIAGEPLYLGCPVA---GYPIESITWQKGVQQLP----------LNRRQKVFP 163
            P+  +SA  G  L + C V    G P+ ++ W                     RQ+   
Sbjct: 231 SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE 290

Query: 164 NG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           N        L+ + V ++     + C   N     +   +  +V    
Sbjct: 291 NNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT---LRTTVKEHH 335

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  129 bits (326), Expect = 5e-37
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 39/220 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V  +C A GNP P + W  +G     +                 +   +   
Sbjct: 29  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR---------------IGGYKVRN 73

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------FVRPMGNVSAI 125
            + +L++E+V    D+G Y C   N+ G  +    H+ V                N S +
Sbjct: 74  QHWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDVVERSRHRPILQAGLPANASTV 131

Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPL--------------NRRQKVFPNGTLLIEN 171
            G  +   C V       I W K V++                 +          L + N
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 191

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
           V +  D G Y C  +N  G  ++Q+  ++V    +    E
Sbjct: 192 VTEA-DAGEYICKVSNYIG-QANQSAWLTVLPKQQAPGRE 229

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 97.7 bits (243), Expect = 8e-25
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 13/167 (7%)

Query: 94  ATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL 153
           A +    +S+       T    +      +  A   +   CP  G P+ ++ W K  ++ 
Sbjct: 2   AEDFVSENSNNKRAPYWTNTEKMEKR-LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60

Query: 154 PLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
               R   +     + +L++E+V    D+G Y C   N+ G  +    H+ V    +  P
Sbjct: 61  KQEHRIGGYKVRNQHWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDVVERSRHRP 118

Query: 210 FEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
                   +     G      C V   D    I W+K+     S  G
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYG 164

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 185 ATNKQGRSSSQNVHISVTVPPKIA-PFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWL 240
           A +    +S+          P      + +  LH+    +    +C    G+P  T+ WL
Sbjct: 2   AEDFVSENSN------NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWL 54

Query: 241 KNGLPILSAMGVGR 254
           KNG        +G 
Sbjct: 55  KNGKEFKQEHRIGG 68

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  129 bits (326), Expect = 6e-37
 Identities = 51/238 (21%), Positives = 75/238 (31%), Gaps = 44/238 (18%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V  +C A GNPTP ISW  +G    G+                 +   +   
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH---------------RIGGIKLRH 69

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------FVRPMGNVSAI 125
              +L++E+V    DRG Y C   NK G        + V                N +A+
Sbjct: 70  QQWSLVMESVVPS-DRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTAV 127

Query: 126 AGEPLYLGCPVAGYPIESITWQKG---------------VQQLPLNRRQKVFPNGTLLIE 170
            G  +   C V       I W K                V  L     + V  +  L + 
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV 228
           NV +  D G Y C ATN  G  + +   +SV  P           + + +   V    
Sbjct: 188 NVSER-DGGEYLCRATNFIG-VAEKAFWLSVHGPRAAEE----ELVEADEAGSVHHHH 239

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 93.1 bits (231), Expect = 5e-23
 Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 111 TGAP-FVRPM----GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--- 162
           TGAP + RP       ++  A   +   CP AG P  SI+W K  ++     R       
Sbjct: 9   TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68

Query: 163 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS--- 218
               +L++E+V    DRG Y C   NK G        + V       P        +   
Sbjct: 69  HQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTA 126

Query: 219 --GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
             G      C V   D    I WLK+     S +G
Sbjct: 127 VLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVG 160

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 82.7 bits (204), Expect = 3e-19
 Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
                    QT   G  V   C    +  PHI W             +    G   V  L
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD----GTPYVTVL 170

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
                + V  +  L + NV +  D G Y C ATN  G  + +   +SV G      
Sbjct: 171 KSWISESVEADVRLRLANVSER-DGGEYLCRATNFIG-VAEKAFWLSVHGPRAAEE 224

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 193 SSQNVHISVTVPPKIAPFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
           +  +  +    P    P      L +    +    +C    G+P  +ISWLKNG      
Sbjct: 1   ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGE 59

Query: 250 MGVGR 254
             +G 
Sbjct: 60  HRIGG 64

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  126 bits (317), Expect = 5e-36
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 34/205 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
           +  ++ G  + L C    +        W L+ +P+                      RR 
Sbjct: 17  EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD----------------KRRF 60

Query: 69  KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----------FVRP 118
               NG L I NV+   D+G Y C  ++     S  +  I +   P           V  
Sbjct: 61  VSQTNGNLYIANVEAS-DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ 119

Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
             +V A+ G+ + L C   G P+  I W+K ++ +P            L I N+Q + D 
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS-GAVLKIFNIQLE-DE 177

Query: 179 GVYWCTATNKQGRSSSQNVHISVTV 203
           G+Y C A N +G+         + V
Sbjct: 178 GIYECEAENIRGKDKH---QARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 91.9 bits (228), Expect = 6e-23
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 16/146 (10%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE--SITWQKGVQQLPL---NRRQKVFPNGTLLI 169
                  V    G+ + L C    +  +  S  W      + +    RR     NG L I
Sbjct: 11  PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS---------GD 220
            NV+   D+G Y C  ++     S  +  I +   P+     +  D+           G 
Sbjct: 71  ANVEAS-DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129

Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
              ++C    G+P   I W K   P+
Sbjct: 130 NVTLECFAL-GNPVPDIRWRKVLEPM 154

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 78.8 bits (194), Expect = 4e-18
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             ++ +F       G  V+L+C A GNP P I W+    P                   +
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP-------------------M 154

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
           P            L I N+Q + D G+Y C A N +G+   Q   I V  
Sbjct: 155 PSTAEISTS-GAVLKIFNIQLE-DEGIYECEAENIRGKDKHQ-ARIYVQA 201

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  128 bits (322), Expect = 1e-35
 Identities = 41/252 (16%), Positives = 64/252 (25%), Gaps = 41/252 (16%)

Query: 16  PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
                   C    N     I+W  D         E  +RI                    
Sbjct: 19  ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-EQASRI---------------HQHKE 62

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAIAGEP 129
            L     + + D G Y+C   N         +               + +          
Sbjct: 63  KLWFVPAKVE-DSGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120

Query: 130 LYLGCP------VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
             L CP           +  + W K  + L L+          L++ NV +   RG Y C
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK-HRGNYTC 179

Query: 184 TATNKQG-RSSSQNVHISVTV--------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
            A+     +       I            P  ++P     ++  G +  + C VT G   
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT-GQLS 238

Query: 235 LTISWLKNGLPI 246
               W  NG  I
Sbjct: 239 DIAYWKWNGSVI 250

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  108 bits (270), Expect = 4e-28
 Identities = 35/226 (15%), Positives = 59/226 (26%), Gaps = 54/226 (23%)

Query: 10  IQQTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
            +Q L       L C          N  P + W  D  PL                    
Sbjct: 111 FKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL-------------------L 151

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTGAP------ 114
           L+          L++ NV +   RG Y C A+          ++ +              
Sbjct: 152 LDNIHFSGVKDRLIVMNVAEK-HRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV 210

Query: 115 FVRPMGN-VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-------- 165
            V P    +    G  + L C V G   +   W+     +  +                 
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 270

Query: 166 -------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
                   L I  ++    +  + C A N  G  ++   +I +  P
Sbjct: 271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA---YIQLIYP 313

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 82.5 bits (203), Expect = 1e-18
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 15/138 (10%)

Query: 122 VSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDHD 177
           + + A E     CP+     + +ITW K   + P++  Q          L     + + D
Sbjct: 15  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE-D 73

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPF----EFQPDLHSGDRAGVQCLVT---- 229
            G Y+C   N         +            +     F+  L      G+ C       
Sbjct: 74  SGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFK 132

Query: 230 -KGDPPLTISWLKNGLPI 246
            + +    + W K+  P+
Sbjct: 133 NENNELPKLQWYKDCKPL 150

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 75.1 bits (184), Expect = 5e-16
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 3   PQLIYKFIQQ-TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P ++    +   +  G  + L C  TG  +    WK +G  +     E+   +GE     
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI----DEDDPVLGEDYYSV 264

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
                +++      L I  ++    +  + C A N  G  ++
Sbjct: 265 ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  128 bits (322), Expect = 1e-35
 Identities = 47/279 (16%), Positives = 81/279 (29%), Gaps = 59/279 (21%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLP 63
             +++   +     V LKC         HI W  D   +   ++H+ K+           
Sbjct: 10  FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG---------- 59

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
                      TLLI    K  D G+Y     + +G+  S+ + +        +  +   
Sbjct: 60  ---------ICTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKK 108

Query: 123 SAIAGEPLYLGCPVAGYPIES----------ITWQKGVQQLPLNRRQKVFPNG---TLLI 169
            A++   L +     G  + S          + W      +  + R K    G    L I
Sbjct: 109 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQI 168

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSS--------------------QNVHISVTVPPKIAP 209
                + D+G Y     + +                         Q           +  
Sbjct: 169 NEPTPN-DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227

Query: 210 FEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
                 +  G    + C V  GDPP  +SWLKN   + S
Sbjct: 228 LPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAS 265

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  111 bits (280), Expect = 2e-29
 Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 56/240 (23%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPLAGDRHEN 50
           +  +L+ +  ++       + ++  A G               ++W  +G  +       
Sbjct: 97  AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--- 153

Query: 51  KNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                  RV+               L I     + D+G Y     + +       V +S 
Sbjct: 154 -------RVKTGVTGE------QIWLQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSG 198

Query: 111 TGAP----------------------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK 148
                                            V+   G+ L L C V G P   ++W K
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258

Query: 149 GVQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
             + L  +    +           I  V    D G Y     NK G  +S    +SV +P
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSD-FTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 96.1 bits (239), Expect = 1e-23
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 15/153 (9%)

Query: 108 ISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKVFPNG 165
           I     P FV  + +        + L C VA       I W K  +++ ++ +       
Sbjct: 2   IDPFTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60

Query: 166 -TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGV 224
            TLLI    K  D G+Y     + +G+  S+ + +      ++     +    S     +
Sbjct: 61  CTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKI 118

Query: 225 QC---------LVTKGDPPLTISWLKNGLPILS 248
           Q           VT     L ++W  NG  I  
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 151

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  127 bits (322), Expect = 6e-35
 Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 41/255 (16%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLAGDRHENKNRIGEARVQQLP 63
           I +   +T      V+L C A G P P I+WK  +DG+           RI         
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI--------- 54

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
               +    + +L I++V+   D G Y C A ++ G    +++++ +  AP F+      
Sbjct: 55  --EVKGQHGSSSLHIKDVKLS-DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIY 110

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-----PNGTLLIENVQKDHD 177
            +  G P+ + C V   P  SI W++    LP      +          L I     + D
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN-D 169

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
            G Y CTATN  G +  Q   +++   P  +P+  +    S   A              +
Sbjct: 170 FGRYNCTATNHIG-TRFQEYILALADVPS-SPYGVKIIELSQTTA-------------KV 214

Query: 238 SWLK----NGLPILS 248
           S+ K     G+PI  
Sbjct: 215 SFNKPDSHGGVPIHH 229

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  104 bits (262), Expect = 2e-26
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----------P 163
             ++   N +      + L C   G PI  ITW++ V         K             
Sbjct: 3   HIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 61

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG 223
           + +L I++V+   D G Y C A ++ G    +++++ +   PK    +       G+   
Sbjct: 62  SSSLHIKDVKLS-DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119

Query: 224 VQCLVTKGDPPLTISWLKNGLPI 246
           + C V   +PP +I W ++ L +
Sbjct: 120 ISCDVK-SNPPASIHWRRDKLVL 141

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 40/217 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I          G P+++ C    NP   I W+ D   L      N            
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG----- 155

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
                        L I     + D G Y CTATN  G +  Q   +++   P       V
Sbjct: 156 ---------RKMILEIAPTSDN-DFGRYNCTATNHIG-TRFQEYILALADVPS--SPYGV 202

Query: 123 SAIA----------GEPLYLG-CPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
             I            +P   G  P+  Y ++       V+++     + V  +G    ++
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVD-------VKEVASEIWKIVRSHGVQTMVV 255

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           + N++ +         A N +G+     + I  T+P 
Sbjct: 256 LNNLEPNTT-YEIRVAAVNGKGQGDYSKIEIFQTLPV 291

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  125 bits (314), Expect = 1e-34
 Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 17/252 (6%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP-----HISWKLDG--YPLAGDRHENKNRIGEARVQQLP 63
           Q     G  V+L C              ++W   G    +A           E++  +  
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
             R      N +L +  ++ + D G Y C        S S ++ + V   P     +  V
Sbjct: 69  AARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127

Query: 123 SAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGT-----LLIENVQKDH 176
                      C    G P   ITW   +  +P   +   F +GT     L I       
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV 187

Query: 177 DRGVYWCTATNKQGRSS-SQNVHISVTVPPKIAPFEFQPDLHS-GDRAGVQCLVTKGDPP 234
           D     C   ++         V+++V  PP+++   +  + +   + A + C       P
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEP 247

Query: 235 LTISWLKNGLPI 246
              +W     P+
Sbjct: 248 TGYNWSTTMGPL 259

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  107 bits (267), Expect = 8e-28
 Identities = 37/204 (18%), Positives = 56/204 (27%), Gaps = 24/204 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           PQ   +  +  L   P    +C++T G P   I+W  D   +           G   V  
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT- 176

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISV--TGAPFVRP 118
                        +L I       D     C   ++         V+++V       +  
Sbjct: 177 -------------SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG 223

Query: 119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
             N   +      L C     P      W   +  LP      V     LLI  V K   
Sbjct: 224 YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP---PFAVAQGAQLLIRPVDKP-I 279

Query: 178 RGVYWCTATNKQGRSSSQNVHISV 201
                C  TN  G +    + + V
Sbjct: 280 NTTLICNVTNALG-ARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  100 bits (250), Expect = 3e-25
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYP-----IESITWQK-------------------- 148
             V+    V    G+ + L C +         +  +TW +                    
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61

Query: 149 -GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
               +    R      N +L +  ++ + D G Y C        S S ++ + V   P+ 
Sbjct: 62  SKRLEFVAARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN 120

Query: 208 APFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
                +  L        +C+ T G PP  I+W  +   + + 
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  124 bits (312), Expect = 3e-34
 Identities = 53/212 (25%), Positives = 79/212 (37%), Gaps = 26/212 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    +     ++     +L C  TG+P P + W   G  +  D    K RI        
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD--GLKYRI-------- 54

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-----NVHISVTGAPFVR 117
               ++       L+I +V  D D  VY   ATN+ G  S        V   +     + 
Sbjct: 55  ----QEFKGGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLE 109

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQ 173
            MG V A+ GE + +  P +G P   ITWQKG   +  N   +V         +    V+
Sbjct: 110 GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVE 169

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           +  D G Y   A N+ G    + V + V   P
Sbjct: 170 RK-DAGFYVVCAKNRFG-IDQKTVELDVADVP 199

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 51/233 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ +          G  VS+K   +G P P I+W+     +  + H              
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF----- 159

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-N 121
                        +    V++  D G Y   A N+ G    + V + V   P   P G  
Sbjct: 160 ----------TSLVFPNGVERK-DAGFYVVCAKNRFG-IDQKTVELDVADVPD-PPRGVK 206

Query: 122 VSAIAGEPLYL---------GCPVAGYPIE-----SITWQKGVQQLPLNRRQKVFPNGTL 167
           VS ++ + + L         G  +  Y +E     +  W + V Q               
Sbjct: 207 VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLR-VGQARET---------RY 256

Query: 168 LIENVQKDHD---RGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDL 216
            + N+        R V    A NK G S  S+    ++T   K     +  ++
Sbjct: 257 TVINLFGKTSYQFR-VI---AENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score =  120 bits (302), Expect = 8e-34
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 13/205 (6%)

Query: 11  QQTLQPGPP-------VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           + T++  PP       V L            +W                           
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGN 121
            + R+ ++ NG+LL + +    D GVY    T++  R +   V   V          + N
Sbjct: 61  YSGREIIYSNGSLLFQMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-TLLIENVQKDHDRGV 180
            +    + + L C        +I W    Q L L  R  +  N   L I+ ++++ D G 
Sbjct: 120 TTVKELDSVTLTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE-DAGE 177

Query: 181 YWCTATNKQGRSSSQNVHISVTVPP 205
           Y C  +N      S ++ + +   P
Sbjct: 178 YQCEISNPVSVRRSNSIKLDIIFDP 202

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 75.5 bits (185), Expect = 9e-17
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 7/143 (4%)

Query: 104 QNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP 163
            NV + V   P    +G  +   G    +   +A +   S     G      + R+ ++ 
Sbjct: 15  NNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTG---QAYSGREIIYS 69

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG 223
           NG+LL + +    D GVY    T++  R +   V   V  P    PF    +    +   
Sbjct: 70  NGSLLFQMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPV-TQPFLQVTNTTVKELDS 127

Query: 224 VQCLVTKGDPPLTISWLKNGLPI 246
           V       D    I WL N   +
Sbjct: 128 VTLTCLSNDIGANIQWLFNSQSL 150

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  119 bits (299), Expect = 2e-33
 Identities = 46/212 (21%), Positives = 69/212 (32%), Gaps = 36/212 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRHENKNRIGEARVQ 60
           P+++            PV+L+C  T +    +   W  +G  L   R             
Sbjct: 4   PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR------------- 50

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
                   K   N    I   + + D G Y C        +   N  I V  AP      
Sbjct: 51  --------KNASNMEYRINKPRAE-DSGEYHCVYHF--VSAPKANATIEVKAAPDITGHK 99

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-----LNRRQKVFPNGT---LLIEN 171
            + +   G+   + C   GYP     W+K    +       + R  +        L I N
Sbjct: 100 RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           +Q   D G Y C ATN  G S+S +  + V V
Sbjct: 160 LQITEDPGEYECNATNSIG-SASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 88.4 bits (219), Expect = 9e-22
 Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 8/136 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQQLPLNRRQKVFPNGTLLIENV 172
            V     +   +  P+ L C +      +    W K   +L   R+     N    I   
Sbjct: 6   IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK--NASNMEYRINKP 63

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232
           + + D G Y C        +   N  I V   P I   +   + + G  A + C    G 
Sbjct: 64  RAE-DSGEYHCVYHF--VSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSV-GY 119

Query: 233 PPLTISWLKNGLPILS 248
           P     W K    +  
Sbjct: 120 PHPEWMWRKKENGVFE 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  121 bits (304), Expect = 9e-33
 Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 34/214 (15%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
            P L  +    ++  G  V L+C   G       W L                    ++Q
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTE------------------LEQ 199

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
                +    P+  L + NV  D +R    C A N  GR+   +V ++V+   F   +  
Sbjct: 200 SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV-SVQVNVS---FPASVQL 255

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR----------RQKVFPNGTLLIEN 171
            +A+      +   V G P  S+ W      L                +   +G L +  
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
                + G Y   A N  G  +S ++  +    P
Sbjct: 316 PTHV-NNGNYTLLAANPFG-QASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 82.9 bits (204), Expect = 1e-18
 Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 7/168 (4%)

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY 139
             +++   GV             +   + S         + N S   G+ + L C V G 
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGR 185

Query: 140 PIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198
            +E   W    ++Q     +    P+  L + NV  D +R    C A N  GR+      
Sbjct: 186 GLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV---- 241

Query: 199 ISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
            SV V                    +   V  G P  ++ WL NG  +
Sbjct: 242 -SVQVNVSFPASVQLHTAVEMHHWCIPFSVD-GQPAPSLRWLFNGSVL 287

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  116 bits (292), Expect = 1e-32
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-PN 73
           + G  V L C A+   +    WK            +    G +++     +RR      N
Sbjct: 8   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
             L+I+N++ + D   Y C   +++     Q +   +T         +   + G+ L L 
Sbjct: 68  FPLIIKNLKIE-DSDTYICEVEDQKE--EVQLLVFGLTANS------DTHLLQGQSLTLT 118

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
                    S+  +         R + +    TL +  ++   D G + CT    Q    
Sbjct: 119 LESPPGSSPSVQCRS-------PRGKNIQGGKTLSVSQLEL-QDSGTWTCTVLQNQK-KV 169

Query: 194 SQNVHISVTVPPKIA 208
              + I V    K +
Sbjct: 170 EFKIDIVVLAFQKAS 184

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 72.3 bits (177), Expect = 9e-16
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 31/142 (21%)

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF------------------- 162
           V    G+ + L C  +        W+   Q   L  +                       
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 163 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDR 221
             N  L+I+N++ + D   Y C   +++     Q +   +T             L  G  
Sbjct: 65  QGNFPLIIKNLKIE-DSDTYICEVEDQKE--EVQLLVFGLTANSDTH-------LLQGQS 114

Query: 222 AGVQCLVTKGDPPLTISWLKNG 243
             +           ++      
Sbjct: 115 LTLTLESP-PGSSPSVQCRSPR 135

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 64.6 bits (157), Expect = 6e-13
 Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 28/103 (27%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             L  G  ++L   +    +P +  +                              + + 
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPR--------------------------GKNIQ 140

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
              TL +  ++   D G + CT    Q       + I V    
Sbjct: 141 GGKTLSVSQLEL-QDSGTWTCTVLQNQK-KVEFKIDIVVLAFQ 181

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  118 bits (298), Expect = 4e-32
 Identities = 38/283 (13%), Positives = 75/283 (26%), Gaps = 62/283 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P      +         ++ +C     P    SW  D                       
Sbjct: 4   PFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDY-------------------VST 43

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH------------ 107
             + R +V   G    +  +++  D D G+Y C  T+  G +SS  +             
Sbjct: 44  EDSPRLEVESKGNKTKMTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102

Query: 108 -ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
                  P    +       G+  +            + +    +++    + K+  +  
Sbjct: 103 EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN 162

Query: 166 ----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-------------- 207
                + +E +Q + D G Y     + +  + S  V +   V  K+              
Sbjct: 163 TGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHST-VVLVGDVFKKLQKEAEFQRQEWIRK 220

Query: 208 APFEFQPDLHS----GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
               F   L           ++C V        I W K+   I
Sbjct: 221 QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 263

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 97.4 bits (242), Expect = 4e-24
 Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 39/213 (18%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            + L+ G           +    +++  +   +        +      +           
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII---------- 166

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS------------------QNVHISVTG 112
                + +E +Q + D G Y     + +  + S                  Q        
Sbjct: 167 ----EMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 221

Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPN-GTLLIE 170
            P      +        + L C VA    E  I W K  +++ ++ +        TLLI 
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 281

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
              K  D G+Y     + +G+  S+   + +  
Sbjct: 282 EFSKK-DAGIYEVILKDDRGKDKSR---LKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 23/112 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRHENKNRIGEARVQ 60
                +++   +     V LKC         HI W  D   +   ++H+ K+        
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG------- 274

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                         TLLI    K  D G+Y     + +G+  S+ + +    
Sbjct: 275 ------------ICTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEA 312

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  114 bits (286), Expect = 4e-30
 Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 20/233 (8%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
           + G  V L C A+   +    WK  +   + G++     +       +    R      N
Sbjct: 7   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
             L+I+N++ + D   Y C   +++         ++           +   + G+ L L 
Sbjct: 67  FPLIIKNLKIE-DSDTYICEVEDQKEEVQLLVFGLT------ANS--DTHLLQGQSLTLT 117

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
                    S+  +         R + +    TL +  ++   D G + CT    Q    
Sbjct: 118 LESPPGSSPSVQCRS-------PRGKNIQGGKTLSVSQLELQ-DSGTWTCTVLQNQK-KV 168

Query: 194 SQNVHISVTVPPKIAPFEFQPDLHSGDRAG-VQCLVTKGDPPLTISWLKNGLP 245
              + I V    K +   ++ +    + +  +   V K      + W      
Sbjct: 169 EFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS 221

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 93.3 bits (231), Expect = 3e-22
 Identities = 34/264 (12%), Positives = 62/264 (23%), Gaps = 72/264 (27%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
              L  G  ++L   +    +P +  +                              + +
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPR--------------------------GKNI 138

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
               TL +  ++   D G + CT    Q       + I V    F +    V    GE +
Sbjct: 139 QGGKTLSVSQLELQ-DSGTWTCTVLQNQK-KVEFKIDIVVLA--FQKASSIVYKKEGEQV 194

Query: 131 YLGCPV-----AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH--------- 176
               P+            + WQ        +       N  + ++ V +D          
Sbjct: 195 EFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP 254

Query: 177 -------------DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG 223
                          G        K G+   Q V++ V                   +  
Sbjct: 255 LHLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMRAT-------------QLQKN 300

Query: 224 VQCLVT-KGDPPLTISWLKNGLPI 246
           + C V     P L +S        
Sbjct: 301 LTCEVWGPTSPKLMLSLKLENKEA 324

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 32/208 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             ++YK   + ++   P++         +  + W+ +    +        +  E  V+++
Sbjct: 183 SSIVYKKEGEQVEFSFPLAFTVEKLT-GSGELWWQAERASSSKSWITFDLKNKEVSVKRV 241

Query: 63  PLNRRQKVFPNGTL---LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
             + + ++     L   L + + +    G        K G+   Q V++ V         
Sbjct: 242 TQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH-QEVNLVVM-------- 292

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESI--TWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
                       L C V G     +  + +   ++  +++R+K           V    +
Sbjct: 293 ----RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK--------AVWVLNP-E 339

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPP 205
            G++ C  ++        N    + V P
Sbjct: 340 AGMWQCLLSDSGQVLLESN----IKVLP 363

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 70.6 bits (172), Expect = 3e-14
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 31/142 (21%)

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF------------------- 162
           V    G+ + L C  +        W+   Q   L  +                       
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 163 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDR 221
             N  L+I+N++ + D   Y C   +++     Q +   +T             L  G  
Sbjct: 64  QGNFPLIIKNLKIE-DSDTYICEVEDQKE--EVQLLVFGLTANSDTH-------LLQGQS 113

Query: 222 AGVQCLVTKGDPPLTISWLKNG 243
             +           ++      
Sbjct: 114 LTLTLESP-PGSSPSVQCRSPR 134

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  111 bits (279), Expect = 7e-30
 Identities = 33/243 (13%), Positives = 62/243 (25%), Gaps = 45/243 (18%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            ++     V+L C     P      W L+G                              
Sbjct: 11  VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------------------ 46

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
               +  I +   + D G Y C          S  + + +     +  + +     GEPL
Sbjct: 47  --TPSYRITSASVN-DSGEYRCQRGL---SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPL 100

Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
            L C       + ++ + +  +            N  L I         G Y C+   K 
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFKFFH-----WNSNLTILKTNIS-HNGTYHCSGMGKH 154

Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVT----KGDPPLTISWLKNG 243
              +S  + ++V                L  G+   + C       +    L  S+    
Sbjct: 155 R-YTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGS 213

Query: 244 LPI 246
             +
Sbjct: 214 KTL 216

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  105 bits (263), Expect = 2e-27
 Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARV 59
               L+ +   +    G P++L+C A  +    ++ +  +G                   
Sbjct: 81  HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------------ 128

Query: 60  QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFV 116
                        N  L I         G Y C+   K    +S  + ++V     AP +
Sbjct: 129 ------------WNSNLTILKTNIS-HNGTYHCSGMGKHR-YTSAGISVTVKELFPAPVL 174

Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
                   + G  + L C                  +     +    +    I   +++ 
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRE- 233

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTV 203
           D G+YWC A  + G    ++  + + V
Sbjct: 234 DSGLYWCEAATEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 74.6 bits (183), Expect = 5e-16
 Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 13/127 (10%)

Query: 121 NVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
            VS    E + L C V   P   S  W         +         +  I +   + D G
Sbjct: 10  WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVN-DSG 61

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
            Y C          S  + + +     +     +     G+   ++C   K      + +
Sbjct: 62  EYRCQRGL---SGRSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLY 117

Query: 240 LKNGLPI 246
            +NG   
Sbjct: 118 YRNGKAF 124

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  111 bits (279), Expect = 2e-29
 Identities = 28/242 (11%), Positives = 62/242 (25%), Gaps = 40/242 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +  L       L C  +      + W+        +  + ++                  
Sbjct: 9   ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGT---------------- 48

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT----GAPFVR---PMGNVS 123
             +  L + N+    D G Y+CT  + +G  + +   + +        F+        + 
Sbjct: 49  -FSSVLTLTNLTGL-DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIF 106

Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
                 + + C V   P   +T  +        +     P             +   Y C
Sbjct: 107 LTEITEITIPCRVTD-PQLVVTLHE-------KKGDVALPVPYDHQRGFSGIFEDRSYIC 158

Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTKGDPPLTISWLK 241
             T       S   ++       I          +  G+   + C+V  G+  +   W  
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI-GNEVVNFEWTY 217

Query: 242 NG 243
             
Sbjct: 218 PR 219

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 88.6 bits (219), Expect = 6e-21
 Identities = 27/202 (13%), Positives = 49/202 (24%), Gaps = 40/202 (19%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
            L     +++ C  T  P   ++                   G+  +     ++R     
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKK--------------GDVALPVPYDHQRGFSGI 150

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM---GNVSAIAGEP 129
                        +   Y C  T       S   ++       +             GE 
Sbjct: 151 F------------EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGEN 198

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPL--------NRRQKVFPNGTLLIENVQKDHDRGVY 181
           + L C V G  + +  W    ++                      L I + +   D G Y
Sbjct: 199 ITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL-EDSGTY 257

Query: 182 WCTATNKQGRSSSQNVHISVTV 203
            C  T            I++TV
Sbjct: 258 TCNVTESVN-DHQDEKAINITV 278

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 80.5 bits (198), Expect = 4e-18
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--LNRRQKVFPNGTLLIENVQKD 175
           P   +         L C  +      + W++  Q+ P  + + Q    +  L + N+   
Sbjct: 6   PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP------DLHSGDRAGVQCLVT 229
            D G Y+CT  + +G  + +   + + VP     F           L       + C VT
Sbjct: 62  -DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120

Query: 230 KGDPPLTISWLKNGLPILS 248
             DP L ++  +    +  
Sbjct: 121 --DPQLVVTLHEKKGDVAL 137

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 13/116 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             +    +Q  ++ G  ++L CI  GN   +  W            +   R+ E     L
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPR--------KESGRLVEPVTDFL 233

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVR 117
                        L I + +   D G Y C  T         + ++I+V  +    
Sbjct: 234 LDMPYHI---RSILHIPSAEL-EDSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  111 bits (279), Expect = 4e-29
 Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 50/265 (18%)

Query: 17  GPPVSLKCI-----------ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
             P  +KC               +    + W         +      R+ E R+ +    
Sbjct: 22  DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE-EPINFRLPENRISK---- 76

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT-----GAPFVRPMG 120
                     L       + D G Y C   N     S     + V          ++   
Sbjct: 77  ------EKDVLWFRPTLLN-DTGNYTCMLRNTTY-CSKVAFPLEVVQKDSCFNSPMKLPV 128

Query: 121 NVSAIAGEPLYLGCP-----VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
           +   I      + CP            +ITW  G  ++  N    +     L        
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ-NFNNVIPEGMNLSFLIALI- 186

Query: 176 HDRGVYWCTAT---NKQGRSSSQNVHISVTVPPKIAPFEF--------QPDLHSGDRAGV 224
            + G Y C  T   N +    ++ + + V   PK A              +   G+   +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246

Query: 225 QCLVT---KGDPPLTISWLKNGLPI 246
            C V      D    + W  +G   
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKP 271

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 88.0 bits (217), Expect = 2e-20
 Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 51/213 (23%)

Query: 22  LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81
           +      +  P I+W +  Y +                     N    +     L     
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKI--------------------QNFNNVIPEGMNLSFLIA 184

Query: 82  QKDHDRGVYWCTAT---NKQGRSSSQNVHISVTGAPFVRP---------MGNVSAIAGEP 129
               + G Y C  T   N +    ++ + + V G+P                     GE 
Sbjct: 185 LI-SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 243

Query: 130 LYLGCPV----AGYPIESITWQKGVQQLPLNRRQKVFP-------------NGTLLIENV 172
           L + C V           + W    ++                           L I+ V
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
             +  +  Y C A + +G   ++   +   VP 
Sbjct: 304 TSEDLKRSYVCHARSAKG-EVAKAAKVKQKVPA 335

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 79.5 bits (195), Expect = 2e-17
 Identities = 28/171 (16%), Positives = 42/171 (24%), Gaps = 33/171 (19%)

Query: 116 VRPMGNVSAIAGEPLYLGCP-----------VAGYPIESITWQK----GVQQLPLNRRQK 160
           +  M  +     EP  + CP            A     ++ W         + P+N R  
Sbjct: 11  LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70

Query: 161 ----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL 216
                     L       + D G Y C   N         V   + V  K + F     L
Sbjct: 71  ENRISKEKDVLWFRPTLLN-DTGNYTCMLRNTTY---CSKVAFPLEVVQKDSCFNSPMKL 126

Query: 217 H------SGDRAGVQCLVT----KGDPPLTISWLKNGLPILSAMGVGRKGN 257
                        + C             TI+W      I +   V  +G 
Sbjct: 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM 177

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 59.9 bits (144), Expect = 1e-10
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 17/134 (12%)

Query: 1   SHPQLIYKFIQQTL---QPGPPVSLKCIAT----GNPTPHISWKLDGYPLAGDRHENKNR 53
           + P +I+      +   +PG  + + C        +    + W +DG     D       
Sbjct: 222 AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP--DDITIDVT 279

Query: 54  IGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
           I E+       +  +       L I+ V  +  +  Y C A + +G   ++   +     
Sbjct: 280 INESISHSRTEDETR----TQILSIKKVTSEDLKRSYVCHARSAKG-EVAKAAKVKQKVP 334

Query: 114 PFVRPMGNVSAIAG 127
               P   V    G
Sbjct: 335 A---PRYTVELACG 345

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  108 bits (271), Expect = 4e-29
 Identities = 37/204 (18%), Positives = 63/204 (30%), Gaps = 21/204 (10%)

Query: 17  GPPVSLKCIATGNPTP----HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-- 70
           G    L C  T +P       I W +                G+        + + +V  
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74

Query: 71  ------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVS 123
                   + ++ + N+Q   D G Y C      G  +++   ++V   P   R   + S
Sbjct: 75  TSNDVKSGDASINVTNLQLS-DIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGS 132

Query: 124 AIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQKDHDRGVY 181
              G    L C    G       WQK      +         +  + ++N   +   G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE-YSGTY 191

Query: 182 WCTATNKQGRSSSQNVHISVTVPP 205
            CT  N+ G   S    + + V P
Sbjct: 192 SCTVQNRVG---SDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 85.1 bits (210), Expect = 3e-20
 Identities = 30/171 (17%), Positives = 48/171 (28%), Gaps = 38/171 (22%)

Query: 108 ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIE----SITWQK--------------- 148
           +S+T      P   +    GE  YL C     P +     I W                 
Sbjct: 1   LSITT-----PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILY 55

Query: 149 ------GVQQLPLNRRQKVFP------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196
                       L  R           + ++ + N+Q   D G Y C      G  +++ 
Sbjct: 56  SGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS-DIGTYQCKVKKAPG-VANKK 113

Query: 197 VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 247
             ++V V P             G+   ++C   +G  PL   W K      
Sbjct: 114 FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT 164

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 62.0 bits (150), Expect = 7e-12
 Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 21/111 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P     F+  + + G    LKC    G+      W+                        
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP--------------- 166

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                      +  + ++N   +   G Y CT  N+ G S    + + V  
Sbjct: 167 ---TPWLAEMTSPVISVKNASSE-YSGTYSCTVQNRVG-SDQCMLRLDVVP 212

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score =  106 bits (265), Expect = 1e-28
 Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 38/198 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +  G  V+L C            W  +G                              
Sbjct: 14  NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------------------ 49

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
             N +L I N + + D G Y C        + S+ V++ V     +        + G+PL
Sbjct: 50  --NSSLNIVNAKFE-DSGEYKCQHQQV---NESEPVYLEVFSDWLLLQASAEVVMEGQPL 103

Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           +L C     + +  + + K  + L          N  + I N   + D G Y+CT    Q
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVE-DSGTYYCTGKVWQ 157

Query: 190 GRSSSQNVHISVTVPPKI 207
               S+ ++I+V   P+ 
Sbjct: 158 LDYESEPLNITVIKAPRE 175

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 127 GEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
           GE + L C     + + S  W                 N +L I N + + D G Y C  
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFE-DSGEYKCQH 70

Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
                 + S+ V++ V     +     +  +  G    ++C   +      + + K+G  
Sbjct: 71  QQV---NESEPVYLEVFSDWLLLQASAEV-VMEGQPLFLRCHGWRNWDVYKVIYYKDGEA 126

Query: 246 I 246
           +
Sbjct: 127 L 127

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  108 bits (271), Expect = 3e-27
 Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 28/251 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW--KLDGYPLAGDRHENKNRIGEARVQ----QLPLN 65
                G  V++ C      +  I +    +G           +             L   
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAI 125
                F   T+++  +    D G YWC         ++  +   + G P ++  GNV+A+
Sbjct: 401 PGNGTF---TVILNQLTSR-DAGFYWCLTNGDTLWRTTVEIK-IIEGEPNLKVPGNVTAV 455

Query: 126 AGEPLYLGCPVA----GYPIESITWQK-GVQQLPL-----NRRQKVFPNG----TLLIEN 171
            GE L + C        Y      W   G Q LP      ++            +L +  
Sbjct: 456 LGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNL 515

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
           V +  D G YWC          +  V+++V         +        D A  + ++  G
Sbjct: 516 VTRA-DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL--AKADAAPDEKVLDSG 572

Query: 232 DPPLTISWLKN 242
              +    +++
Sbjct: 573 FREIENKAIQD 583

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  101 bits (252), Expect = 1e-24
 Identities = 39/265 (14%), Positives = 74/265 (27%), Gaps = 29/265 (10%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRHENKNRIGEA-- 57
            P L+      T+  G  V++ C             +K  G         +         
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171

Query: 58  RVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
           R++       Q +F   +++I  ++   D G Y C A +    S+ +N  + V       
Sbjct: 172 RIRLDIQGTGQLLF---SVVINQLRLS-DAGQYLCQAGDDSN-SNKKNADLQVLKPEPEL 226

Query: 118 PMGN----------VSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNG- 165
              +          +           C  +      +     G +      R  + P   
Sbjct: 227 VYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK 286

Query: 166 ----TLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDLHS 218
               +++I  ++K+ D G Y C A +       S  Q   + V     I          +
Sbjct: 287 DGSFSVVITGLRKE-DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA 345

Query: 219 GDRAGVQCLVTKGDPPLTISWLKNG 243
           G    V C   + +      W    
Sbjct: 346 GSSVAVLCPYNRKESKSIKYWCLWE 370

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 98.5 bits (244), Expect = 1e-23
 Identities = 36/271 (13%), Positives = 68/271 (25%), Gaps = 46/271 (16%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
           +        C  +      +     G                 R+   P ++      + 
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG---------RILLNPQDKDG----SF 290

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMGNVSAIAGEPL 130
           +++I  ++K+ D G Y C A +         +              R    V  +AG  +
Sbjct: 291 SVVITGLRKE-DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSV 349

Query: 131 YLGCPVAGYPIESITW-----------------QKGVQQLPLNRRQKVFPNG-----TLL 168
            + CP      +SI +                  +G  +     R  +         T++
Sbjct: 350 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVI 409

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV 228
           +  +    D G YWC         ++  + I    P              G+   V C  
Sbjct: 410 LNQLTSR-DAGFYWCLTNGDTLWRTTVEIKIIEGEPNL--KVPGNVTAVLGETLKVPCHF 466

Query: 229 T---KGDPPLTISWLKNGLPILSAMGVGRKG 256
                        W   G   L +   G   
Sbjct: 467 PCKFSSYEKYWCKWNNTGCQALPSQDEGPSK 497

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.3 bits (207), Expect = 9e-19
 Identities = 38/274 (13%), Positives = 69/274 (25%), Gaps = 46/274 (16%)

Query: 15  QPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             G  VS+ C     + N      W   G         +                R  + 
Sbjct: 13  VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGY-----VSSKYAGRANLT 67

Query: 72  PNG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
                    + I  + +D D G Y C         S         G   +      +   
Sbjct: 68  NFPENGTFVVNIAQLSQD-DSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126

Query: 127 GEPLYLGCPV-AGYPIESITWQKGVQQLPL-------------NRRQKVFPNG------T 166
           G  + + CP       +  +  K +   P+               R ++   G      +
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEF---------QPDLH 217
           ++I  ++   D G Y C A +    S+ +N  + V  P     +E               
Sbjct: 187 VVINQLRLS-DAGQYLCQAGDDSN-SNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPE 244

Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
             + A   C  +       +     G    +  G
Sbjct: 245 VANVAKFLCRQS-SGENCDVVVNTLGKRAPAFEG 277

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 24/145 (16%)

Query: 121 NVSAIAGEPLYLGC---PVAGYPIESITWQKGV--------------QQLPLNRRQKVFP 163
            V+++ G  + + C   P +        W +                       R  +  
Sbjct: 9   EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68

Query: 164 NG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS 218
                   + I  + +D D G Y C       R  S +V + V+  P +        +  
Sbjct: 69  FPENGTFVVNIAQLSQD-DSGRYKCGLGI-NSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126

Query: 219 GDRAGVQCLVTKGDPPLTISWLKNG 243
           G    + C     +     S  K  
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQI 151

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score =  102 bits (255), Expect = 4e-27
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 17  GPPVSLKC--IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
           G  ++L        +    I W+         +   +        +        K+F NG
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEK-------ETFKEKDTYKLFKNG 66

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
           TL I++++ D D+ +Y  +  + +G++   +   + +      R      +       L 
Sbjct: 67  TLKIKHLKTD-DQDIYKVSIYDTKGKNVLEKIFDLKI----QERVSKPKISWTCINTTLT 121

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C V       +   +  + L L++R        ++            + CTA NK  + S
Sbjct: 122 CEVMNGTDPELNLYQDGKHLKLSQR--------VITHKWTTS-LSAKFKCTAGNKVSKES 172

Query: 194 SQNVHISVTVPPK 206
           S      V+ P K
Sbjct: 173 S---VEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 85.7 bits (212), Expect = 9e-21
 Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 24/147 (16%)

Query: 116 VRPMGNVSAIAGEPLYLGCP--VAGYPIESITWQK------------GVQQLPLNRRQKV 161
           +          G+ + L  P       I+ I W+K              +        K+
Sbjct: 3   ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62

Query: 162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDL-HSG 219
           F NGTL I++++ D D+ +Y  +  + +G++   +   + +           +P +  + 
Sbjct: 63  FKNGTLKIKHLKTD-DQDIYKVSIYDTKGKNVLEKIFDLKIQERVS------KPKISWTC 115

Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPI 246
               + C V  G  P  ++  ++G  +
Sbjct: 116 INTTLTCEVMNGTDP-ELNLYQDGKHL 141

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  105 bits (263), Expect = 6e-27
 Identities = 33/202 (16%), Positives = 57/202 (28%), Gaps = 24/202 (11%)

Query: 12  QTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +  Q    +   C  A G P   +SW+      A  +                 N    V
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQE--------------IRNPNGTV 190

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
                  +   ++ H +    C           +++ ++V   P   +        +   
Sbjct: 191 TVISRYRLVPSREAH-QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248

Query: 129 PLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
            + L C     P      W      LP   +     N TL  +        G Y C ATN
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLP---KGVEAQNRTLFFKGPINYSLAGTYICEATN 305

Query: 188 KQGRSSSQNVHISVTVPPKIAP 209
             G + S  V +++T    +  
Sbjct: 306 PIG-TRSGQVEVNITEAAALEH 326

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 98.7 bits (245), Expect = 2e-24
 Identities = 34/257 (13%), Positives = 74/257 (28%), Gaps = 26/257 (10%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP----HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
                 G  V L C             ++W+        +       +G +     P   
Sbjct: 23  SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV--LAPYRE 80

Query: 67  RQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV------ 116
           R +     F +GT+ +  ++ + D GVY C        +    ++++V   P        
Sbjct: 81  RVEFLRPSFTDGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 139

Query: 117 RPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLP-----LNRRQKVFPNGTLLIE 170
             +        + L   C  A G P   ++W+  ++         N    V       + 
Sbjct: 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLV 199

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLH-SGDRAGVQCLVT 229
             ++ H +    C           +++ ++V   P++    F  + +       + C   
Sbjct: 200 PSREAH-QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKAD 257

Query: 230 KGDPPLTISWLKNGLPI 246
              P     W      +
Sbjct: 258 ANPPATEYHWTTLNGSL 274

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 79.8 bits (196), Expect = 1e-17
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 31/170 (18%)

Query: 113 APFVRPMGNVSAIAGEPLYLGC----PVAGYPIESITWQKGVQQLPLN------------ 156
           +  V+   ++    G  + L C    P+    I  +TWQK       N            
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 157 ---RRQKV------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
               R++V      F +GT+ +  ++ + D GVY C        +    ++++V   P  
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMAKPTN 133

Query: 208 APFEFQPDLH-----SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV 252
                Q  L              C    G PP  +SW            +
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 22/109 (20%), Positives = 28/109 (25%), Gaps = 24/109 (22%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
                    V L C A  NP      W      L                          
Sbjct: 241 GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG----------------------V 278

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
              N TL  +        G Y C ATN  G + S  V +++T A  +  
Sbjct: 279 EAQNRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAALEH 326

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score =  101 bits (252), Expect = 1e-26
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 38/192 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +     V+L C    +P    I W  +G  +                           
Sbjct: 14  INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------------------ 49

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
                         +D G Y C          S  VH++V     V    ++    GE +
Sbjct: 50  --TQPSYRFKANN-NDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLEFQEGETI 103

Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
            L C      P+  +T+ +  +    +       + T  I      H  G Y CT     
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFSHL-----DPTFSIPQANHSH-SGDYHCTGNIGY 157

Query: 190 GRSSSQNVHISV 201
              SS+ V I+V
Sbjct: 158 TLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 13/129 (10%)

Query: 121 NVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
            ++ +  + + L C  A  P  +SI W      +P +                   +D G
Sbjct: 13  WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------TQPSYRFKANN-NDSG 64

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
            Y C          S  VH++V     +           G+   ++C   K  P + +++
Sbjct: 65  EYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSWKDKPLVKVTF 120

Query: 240 LKNGLPILS 248
            +NG     
Sbjct: 121 FQNGKSQKF 129

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 26/101 (25%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
               Q G  + L+C +  +     +++  +G                             
Sbjct: 94  HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---------------------- 131

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
              + T  I      H  G Y CT        SS+ V I+V
Sbjct: 132 --LDPTFSIPQANHSH-SGDYHCTGNIGYTLFSSKPVTITV 169

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  101 bits (254), Expect = 1e-26
 Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 56/224 (25%)

Query: 17  GPPVSLKC----------IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
              + ++           +        ++W  +G  +              RV+      
Sbjct: 8   ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD----------RVKTGVTGE 57

Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------------ 114
           +        L I     + D+G Y     + +       V +S                 
Sbjct: 58  QI------WLQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQA 109

Query: 115 ----------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP- 163
                            V+   G+ L L C V G P   ++W K  + L       +   
Sbjct: 110 AIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169

Query: 164 ---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
                   I  V    D G Y     NK G  +S    +SV +P
Sbjct: 170 AGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSD-FTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 76.8 bits (189), Expect = 4e-17
 Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 37/161 (22%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIES----------ITWQKGVQQLPLNRRQKVFPNG---T 166
           G+  A++   L +     G  + S          + W      +  + R K    G    
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP----------------- 209
           L I     + D+G Y     + +       V +S     +                    
Sbjct: 61  LQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 118

Query: 210 -FEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
                PD+ +   G    + C V  GDPP  +SWLKN   +
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKAL 158

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             L       T+Q G  ++L C   G+P P +SW  +   LA   H              
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH-------------- 163

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             N + +        I  V    D G Y     NK G  +S    +SV
Sbjct: 164 -CNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSD-FTVSV 208

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  101 bits (253), Expect = 1e-26
 Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 23/206 (11%)

Query: 13  TLQPGPPVSLKCIA---TGNPTPHISWKLDGYP----LAGDRHENKNRIGEARVQQLPLN 65
           T   G  V+L       +  P   +SW   G      L G  H +   I         ++
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSA 124
           R         L++         G Y C     +   + Q  H+SV               
Sbjct: 62  RSAN---TFFLVVTAANIS-HDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQF 116

Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPL----NRRQKVFPNGTLLI---ENVQKDHD 177
                L + C V  +P   + W       P     N       +G+L +    ++ K   
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP-W 175

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTV 203
                C   N +    +  V++S  +
Sbjct: 176 HLPVTCVGKNDKE--EAHGVYVSGYL 199

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 71.6 bits (175), Expect = 2e-15
 Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 27/157 (17%)

Query: 122 VSAIAGEPLYLGCP---VAGYPIESITWQKG-----------------VQQLPLNRRQKV 161
           V+A  GE + L      V+  P   ++W K                    + P      +
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 162 FPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS 218
             +     L++         G Y C     +   + Q  H+SV  P  ++    +     
Sbjct: 61  HRSANTFFLVVTAANIS-HDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPD 118

Query: 219 GDRAGVQCLVTKGDPPLTISWL-KNGLPILSAMGVGR 254
                V C V    P   + WL   G+        G 
Sbjct: 119 FSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGG 154

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 67.0 bits (163), Expect = 9e-14
 Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 21/111 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
             L     +        +++ C     P PH+ W +           N            
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG----------- 153

Query: 63  PLNRRQKVFPNGTLLI---ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                     +G+L +    ++ K        C   N +    +  V++S 
Sbjct: 154 ----GVMKEKDGSLSVAVDLSLPKP-WHLPVTCVGKNDKE--EAHGVYVSG 197

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score =  100 bits (250), Expect = 4e-26
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 39/214 (18%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +   Q G  VSL C  TG  +P  SW+                         PLN +   
Sbjct: 10  RYLAQIGDSVSLTCSTTGCESPFFSWRTQI--------------------DSPLNGKVTN 49

Query: 71  FPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGE 128
                TL +  V   ++   Y CTAT +  +   + + + +   P       +    AG+
Sbjct: 50  EGTTSTLTMNPVSFGNE-HSYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGK 107

Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTL------LIENVQKDHDRG 179
           P+ + C VA  YP +   I   KG   +      +     +L      +      +    
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167

Query: 180 VYWCTATNKQG------RSSSQNVHISVTVPPKI 207
           V  C A                   + V + PK 
Sbjct: 168 VLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 86.0 bits (212), Expect = 1e-20
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 4/135 (2%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
             P     A  G+ + L C   G      +W+  +      +        TL +  V   
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP- 234
           ++   Y CTAT +  +   + + + +   PK         L +G    V+C V    P  
Sbjct: 65  NE-HSYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFD 122

Query: 235 -LTISWLKNGLPILS 248
            L I  LK    + S
Sbjct: 123 RLEIDLLKGDHLMKS 137

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 99.7 bits (248), Expect = 4e-26
 Identities = 38/207 (18%), Positives = 55/207 (26%), Gaps = 44/207 (21%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
                  G  + L C    + T      W   G  L  D                     
Sbjct: 6   FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------------------- 45

Query: 68  QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-GNVSAIA 126
               P      +    D   G Y C              +I + G P V+ +  +     
Sbjct: 46  ---LPGQKTEFKVDSDD-QWGEYSCVFLP----EPMGTANIQLHGPPRVKAVKSSEHINE 97

Query: 127 GEPLYLGCPVAGYP-IESITWQKGVQQLP------LNRRQKVFPNG---TLLIENVQKDH 176
           GE   L C     P +    W K               R  V  +     L IEN+  + 
Sbjct: 98  GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTV 203
           D G Y C  T+ +G   +    I++ V
Sbjct: 158 DPGQYRCNGTSSKGSDQA---IITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.4 bits (177), Expect = 9e-16
 Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 11/141 (7%)

Query: 118 PMGNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
            +       G  + L C +      +    W KG   L  +      P      +    D
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDD 59

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL 235
              G Y C              +I +  PP++   +    ++ G+ A + C      P  
Sbjct: 60  -QWGEYSCVFLP----EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 114

Query: 236 TISWLKNGLPILSAMGVGRKG 256
             +W K       A+  G + 
Sbjct: 115 DWAWYKITDSEDKALMNGSES 135

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P++      + +  G    L C +   P     +W              K    E +   
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY-------------KITDSEDKALM 130

Query: 62  LPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                R  V  +     L IEN+  + D G Y C  T+ +G S    + + V
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRV 181

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score =  101 bits (252), Expect = 5e-26
 Identities = 44/242 (18%), Positives = 66/242 (27%), Gaps = 54/242 (22%)

Query: 11  QQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
           +  +  G  V L C   +A     P ISW     P    +    N   +        +  
Sbjct: 11  EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70

Query: 68  QKVFP-------------NGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISV 110
            K                  TL + +V    D G YWC       R+     +++V + V
Sbjct: 71  YKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 111 TGAP-----FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----------- 154
           TG        V     V    G  + + CP       ++TW  G                
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189

Query: 155 -------------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
                        +  R        L+I   +   D G  WC     QG     +   S 
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT-DAGRVWCELATGQG---ELDADRSS 245

Query: 202 TV 203
           T+
Sbjct: 246 TI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 71.5 bits (174), Expect = 6e-15
 Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 7/115 (6%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S+   +       +  G  +++ C  T     +++W                 +      
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 61  QLP-----LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            +      +  R        L+I   +   D G  WC     QG     +   ++
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKIT-DAGRVWCELATGQG-ELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 59.2 bits (142), Expect = 1e-10
 Identities = 25/172 (14%), Positives = 39/172 (22%), Gaps = 45/172 (26%)

Query: 118 PMGNVSAIAGEPLYLGCPV---AGYPIESITWQKGVQQLPLNRRQKVF------------ 162
               V   AG  + L C            I+W KG       +  K              
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67

Query: 163 --------------------PNGTLLIENVQKDHDRGVYWCTATNKQGR------SSSQN 196
                                  TL + +V    D G YWC       R      + S  
Sbjct: 68  SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVV 126

Query: 197 VHISVTVPPKIAPFEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           + ++   P           +    G+   + C  T       ++W       
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFF 177

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 96.5 bits (240), Expect = 1e-24
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 39/212 (18%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            + L+ G           +    +++  +   +        +      +           
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII---------- 61

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS------------------QNVHISVTG 112
                + +E +Q + D G Y     + +  + S                  Q        
Sbjct: 62  ----EMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 116

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRRQKVFP-NGTLLI 169
            P FV  + +        + L C VA    E+ I W K  +++ ++ +        TLLI
Sbjct: 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 175

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
               K  D G+Y     + +G+  S+ + +  
Sbjct: 176 TEFSKK-DAGIYEVILKDDRGKDKSR-LKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 24/157 (15%)

Query: 113 APFVRPMGNVSAIAGEPL-YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-----T 166
            PF +    V  +    + +            + +    +++    + K+  +       
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-------- 218
           + +E +Q + D G Y     + +  + S  V +           EFQ             
Sbjct: 63  MFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121

Query: 219 ---------GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
                         ++C V        I W K+   I
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 158

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 23/107 (21%)

Query: 8   KFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRHENKNRIGEARVQQLPLN 65
           +++   +     V LKC         HI W  D   +   ++H+ K+             
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG------------ 169

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                    TLLI    K  D G+Y     + +G+  S+ + +    
Sbjct: 170 -------ICTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 3/45 (6%)

Query: 207 IAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
           I PF       ++    +        K      ++++ N   I  
Sbjct: 2   IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE 46

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 94.6 bits (235), Expect = 3e-24
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 38/193 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            ++     V+LKC    +P  +   W  +   ++                          
Sbjct: 17  YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------------------ 52

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
               +  I+     +D G Y C          S  V + V     +           +P+
Sbjct: 53  --ASSYFIDAATV-NDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI 106

Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           +L C       +  +T+ +  +            N    I         G Y+C      
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKDRKYFH-----HNSDFHIPKATLKD-SGSYFCRGLVGS 160

Query: 190 GRSSSQNVHISVT 202
              SS+ V+I++T
Sbjct: 161 KNVSSETVNITIT 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 66.4 bits (162), Expect = 9e-14
 Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 13/121 (10%)

Query: 127 GEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            + + L C  A  P   S  W      +            +  I+     +D G Y C  
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------ASSYFIDAATV-NDSGEYRCQT 73

Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
                   S  V + V +   +            D   ++C   K      +++L+NG  
Sbjct: 74  NLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKD 129

Query: 246 I 246
            
Sbjct: 130 R 130

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 26/114 (22%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARV 59
               L+ +  +   +   P+ L+C +  N   H +++  +G       H           
Sbjct: 87  HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH----------- 135

Query: 60  QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
                        N    I         G Y+C         SS+ V+I++T A
Sbjct: 136 -------------NSDFHIPKATLKD-SGSYFCRGLVGSKNVSSETVNITITQA 175

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 91.3 bits (227), Expect = 7e-24
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P ++     QTL       LKC ATG+P P ISW  +G+   G                 
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR---------------- 52

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
             + R  +   GTL I+N++   D G Y C AT+  G  +S +  + VT +
Sbjct: 53  --DPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSG-ETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 78.6 bits (194), Expect = 5e-19
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNG 165
           S +  P   ++   N +        L C   G P+  I+W K     P    R  +   G
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
           TL I+N++   D G Y C AT+  G  +S +  + VT
Sbjct: 63  TLQIKNLRIS-DTGTYTCVATSSSG-ETSWSAVLDVT 97

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 97.6 bits (242), Expect = 1e-23
 Identities = 32/253 (12%), Positives = 65/253 (25%), Gaps = 41/253 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +  L  G  V + C  + +    +  +                         PL +++ +
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIE------------------------TPLPKKELL 43

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
            P     +  +    +     C +       S+    ++V   P              G+
Sbjct: 44  LPGNNRKVYELSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102

Query: 129 PLYLGCPVAG-YPIESIT--WQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            L L C V G  P  ++T    +G ++L            T  +   +       + C  
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH-HGANFSCRT 161

Query: 186 TNKQG-------RSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDP--PL 235
                        ++S    +   V P   P    P  L    +  V C +    P    
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEA 221

Query: 236 TISWLKNGLPILS 248
            +        +  
Sbjct: 222 QVHLALGDQRLNP 234

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 97.2 bits (241), Expect = 2e-23
 Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 39/247 (15%)

Query: 11  QQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
            + L+     ++ C   G        +   L    L        +               
Sbjct: 197 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF------------- 243

Query: 68  QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTGAPFVRPMGNVSAIA 126
                +    +    +D       C          +   V I    AP V          
Sbjct: 244 -----SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT-KPEVSE 297

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
           G  + + C    +P   +T      Q    R Q        L+     + +   + C+AT
Sbjct: 298 GTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQ--------LLLKATPEDNGRSFSCSAT 347

Query: 187 NKQGRSS---SQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTKGDPPLTISWLK 241
            +        +Q   + V   P++   +   +       +    C    G+P   +  LK
Sbjct: 348 LEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLPELKCLK 406

Query: 242 NGLPILS 248
           +G   L 
Sbjct: 407 DGTFPLP 413

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 90.3 bits (223), Expect = 7e-21
 Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 49/211 (23%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P       +  +  G  V++KC A       ++                         
Sbjct: 282 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLG----------------- 324

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVTGAP--- 114
                      P   LL+     + +   + C+AT +        +Q   + V   P   
Sbjct: 325 -----------PRAQLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQ 173
                GN +          C   G P+  +   K G   LP+     V            
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV------------ 420

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
                G Y C A + QG   ++ V ++V  P
Sbjct: 421 TRDLEGTYLCRARSTQG-EVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 76.8 bits (188), Expect = 2e-16
 Identities = 29/263 (11%), Positives = 66/263 (25%), Gaps = 38/263 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARV 59
            ++    +      G  ++L+C   G        +        L     + +  +GE   
Sbjct: 87  ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL-----KREPAVGE--- 138

Query: 60  QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-------RSSSQNVHISVTG 112
                       P        V++DH    + C               ++S    +    
Sbjct: 139 ------------PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186

Query: 113 APF--VRPMGNVSAIAGEPLYLGCPVAG---YPIESITWQKGVQQL-PLNRRQKVFPNGT 166
            P    + +            + C + G        +    G Q+L P         +  
Sbjct: 187 LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 246

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQC 226
             +    +D       C          +    +++   P       +P++  G    V+C
Sbjct: 247 ASVSVTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKC 305

Query: 227 LVTKGDPPLTISWLKNGLPILSA 249
                   +T++ +        A
Sbjct: 306 EAH-PRAKVTLNGVPAQPLGPRA 327

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 9/140 (6%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
            V    G  + + C  +      +  +      PL +++ + P     +  +    +   
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPP--LTI 237
             C +       S+    ++V   P+       P     G    ++C V  G P   LT+
Sbjct: 63  PMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121

Query: 238 SWLKNGLPILSAMGVGRKGN 257
             L+    +     VG    
Sbjct: 122 VLLRGEKELKREPAVGEPAE 141

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 93.0 bits (230), Expect = 2e-23
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 58/218 (26%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
           Q    V L C        +I+W  DG  +     + K                       
Sbjct: 16  QEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKK----------------------- 49

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGR-------------SSSQNVHISVTGAPFVRPMGN 121
              + +  KD  RG+Y C  +  + +             +               +  G+
Sbjct: 50  KWNLGSNAKD-PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGS 108

Query: 122 VS--------------AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-- 165
                           +I+G  + L CP   YP   I WQ   + +  +   K   +   
Sbjct: 109 DGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED 166

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
            L ++   +    G Y C     +   ++  +++   V
Sbjct: 167 HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 204

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 61.8 bits (149), Expect = 7e-12
 Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 37/146 (25%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
              + L C       ++ITW K  + +      K        + +  KD  RG+Y C  +
Sbjct: 18  DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKK----KWNLGSNAKD-PRGMYQCKGS 69

Query: 187 NKQGR-----------SSSQNVHISVTVPPKIAPFEFQPDLH---------------SGD 220
             + +             ++          K    +   D +               SG 
Sbjct: 70  QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129

Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
              + C      P   I W  N   I
Sbjct: 130 TVILTCPQ---YPGSEILWQHNDKNI 152

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 21/160 (13%)

Query: 109 SVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN------RRQKVF 162
           +VT      P    +   G  + L C         +   +   Q   N       R  + 
Sbjct: 4   TVTA-----PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLL 58

Query: 163 P------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL 216
                       I +VQ   D G Y C           + + + V               
Sbjct: 59  EEQLPLGKALFHIPSVQVR-DSGQYRCLVICGAA-WDYKYLTVKVKASYMRIDTRILEV- 115

Query: 217 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKG 256
                  + C    G P   +SW    +P  ++     +G
Sbjct: 116 PGTGEVQLTCQAR-GYPLAEVSWQNVSVPANTSHIRTPEG 154

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 92.3 bits (229), Expect = 5e-23
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 38/200 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +     V+LKC    +P      W  +   ++                          
Sbjct: 17  YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------------------------ 52

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
               +  I+    D D G Y C          S  V + V     +           +P+
Sbjct: 53  --ASSYFIDAATVD-DSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI 106

Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           +L C       +  +T+ +  +            N    I         G Y+C      
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKGRKYFH-----HNSDFYIPKATLKD-SGSYFCRGLVGS 160

Query: 190 GRSSSQNVHISVTVPPKIAP 209
              SS+ V I++T    ++ 
Sbjct: 161 KNVSSETVQITITQGLAVST 180

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 13/121 (10%)

Query: 127 GEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            + + L C  A  P  +S  W      +            +  I+    D D G Y C  
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------ASSYFIDAATVD-DSGEYRCQT 73

Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
                   S  V + V +   +            D   ++C   K      +++L+NG  
Sbjct: 74  QLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKG 129

Query: 246 I 246
            
Sbjct: 130 R 130

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 26/115 (22%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARV 59
               L+ +  +   +   P+ L+C +  N   H +++  +G       H           
Sbjct: 87  HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----------- 135

Query: 60  QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                        N    I         G Y+C         SS+ V I++T   
Sbjct: 136 -------------NSDFYIPKATLKD-SGSYFCRGLVGSKNVSSETVQITITQGL 176

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 93.2 bits (231), Expect = 7e-23
 Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 39/246 (15%)

Query: 12  QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
           + L+     ++ C   G        +   L    L                   P     
Sbjct: 13  RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN------------------PTVTYG 54

Query: 69  KVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTGAPFVRPMGNVSAIAG 127
               +    +    +D       C        + + Q V I    AP V          G
Sbjct: 55  NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT-KPEVSEG 113

Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
             + + C        ++               +       L+     + +   + C+AT 
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPA----------QPLGPRAQLLLKATPEDNGRSFSCSATL 163

Query: 188 K---QGRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKN 242
           +   Q    +Q   + V   P++   +   +       +    C    G+P   +  LK+
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMC-QAWGNPLPELKCLKD 222

Query: 243 GLPILS 248
           G   L 
Sbjct: 223 GTFPLP 228

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 89.0 bits (220), Expect = 2e-21
 Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 49/211 (23%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P       +  +  G  V++KC A           L+G P                  
Sbjct: 97  SFPAPNVILTKPEVSEGTEVTVKCEAHPRAK----VTLNGVPA----------------- 135

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTGAPFVR 117
                   +       L+     + +   + C+AT +   Q    +Q   + V   P + 
Sbjct: 136 --------QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 187

Query: 118 PM---GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQ 173
                GN +          C   G P+  +   K G   LP+     V            
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV------------ 235

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
                G Y C A + QG   ++ V ++V  P
Sbjct: 236 TRDLEGTYLCRARSTQG-EVTREVTVNVLSP 265

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 88.7 bits (220), Expect = 1e-22
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 23/130 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +    + QT+       L C+ATG+P P I W+ DG  ++                  
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ---------------- 52

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRP--M 119
             + R K   NG L I   +   D G Y C A+   G  ++ + +I V      V+P   
Sbjct: 53  --DSRIKQLENGVLQIRYAKLG-DTGRYTCIASTPSG-EATWSAYIEVQEFGVPVQPPRP 108

Query: 120 GNVSAIAGEP 129
            + + I   P
Sbjct: 109 TDPNLIPSAP 118

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 84.0 bits (208), Expect = 6e-21
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGT 166
             +G P   +   N +        L C   G P+ +I W+K GV     + R K   NG 
Sbjct: 4   GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV 63

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPF 210
           L I   +   D G Y C A+   G  ++ + +I V         
Sbjct: 64  LQIRYAKLG-DTGRYTCIASTPSG-EATWSAYIEVQEFGVPVQP 105

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 87.9 bits (218), Expect = 2e-22
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 18/116 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++       +  G P +L C A G PTP I W   G  +  D+ + ++          
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-------- 61

Query: 63  PLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                  + P+G+L    +        D GVY C A N  G + S +  + V  A 
Sbjct: 62  ------MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 82.2 bits (203), Expect = 3e-20
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTLLI 169
            V    ++    GEP  L C   G P  +I W KG +++  ++      + + P+G+L  
Sbjct: 12  IVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71

Query: 170 ENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
             +        D GVY C A N  G + S +  + V      
Sbjct: 72  LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 90.7 bits (224), Expect = 6e-22
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 43/240 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDR----HENKNRIG 55
           P L     Q  +  G  V + C+           + W               + +   + 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 56  EARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
             R Q            +G+LL+++VQK  D G+Y C    K   S      + +   P 
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKA-DEGIYTCEIRLKNE-SMVMKKPVELWVLPE 123

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYP---IESITWQKGVQQLPLNRRQKVF---------- 162
                 +    G+   + C +       +  + W               +          
Sbjct: 124 EPRD--LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQ 181

Query: 163 -----------------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
                             +G++ ++ V++  D+G+Y C+    +   S + + + V    
Sbjct: 182 SLGRFRNRVDLTGDISRNDGSIKLQTVKES-DQGIYTCSIYVGKL-ESRKTIVLHVVQDE 239

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 59.5 bits (143), Expect = 9e-11
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 34/165 (20%)

Query: 110 VTGAP-FVRPMGNVSAIAGEPLYLGCPV---AGYPIESITWQKGVQQLPLNRRQKVF--- 162
             G P        +    GE + +GC V       ++ + W     +   +     +   
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 163 --------------------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
                                +G+LL+++VQK  D G+Y C    K   S      + + 
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA-DEGIYTCEIRLKNE-SMVMKKPVELW 119

Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGLP 245
           V P          +  GD   ++C +   +      ++W+ +   
Sbjct: 120 VLP---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 57.2 bits (137), Expect = 6e-10
 Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 13/117 (11%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPH---ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
              ++ G    ++C            ++W         +             +   L R 
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186

Query: 68  QKVF--------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV 116
           +            +G++ ++ V++  D+G+Y C+    +   S + + + V    F 
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKES-DQGIYTCSIYVGKL-ESRKTIVLHVVQDEFQ 241

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 86.2 bits (213), Expect = 2e-21
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
              +   + Q    G  V L C A G+P P I W  +G        +  +    AR+ ++
Sbjct: 22  AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDG---ARLDRV 78

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
            ++         T+ I+ + ++ D G Y C A+N   R+        V    +VR    V
Sbjct: 79  HIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHL-TRAPRVK---WVRAQAVV 133

Query: 123 SAI 125
             +
Sbjct: 134 LVL 136

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 63.1 bits (153), Expect = 7e-13
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 18/111 (16%)

Query: 101 SSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----- 154
             S  +    +    FV+   +     G  + L C   G P+  I W    Q        
Sbjct: 9   HHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQ 68

Query: 155 -----------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
                      ++         T+ I+ + ++ D G Y C A+N   R+  
Sbjct: 69  LWDGARLDRVHIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHL 118

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 89.1 bits (220), Expect = 4e-21
 Identities = 31/251 (12%), Positives = 64/251 (25%), Gaps = 59/251 (23%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH----ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
           +    G   +L     G+         +W  D  P   +                     
Sbjct: 12  RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------------------- 50

Query: 68  QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP---FVRPMGNVSA 124
                  TL + +   + + G Y  T  +    +S ++    +  A     +    +   
Sbjct: 51  -----TATLTVADATSE-NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYV 104

Query: 125 IAGEPLYLGC--------PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
            +   + L            A       +W KG   +             + I+    D 
Sbjct: 105 SSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------TTQDITIQEFTAD- 155

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVT------ 229
             GVY      +   S++      +     +         +  G+   +  +V+      
Sbjct: 156 KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215

Query: 230 -KGDPPLTISW 239
             G P LTI +
Sbjct: 216 SSGMPNLTIKY 226

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 70.2 bits (171), Expect = 2e-14
 Identities = 32/226 (14%), Positives = 57/226 (25%), Gaps = 61/226 (26%)

Query: 12  QTLQPGPPVSLKC---IATGNPTP-----HISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
             +     V L      + G         H SW      +                    
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT------------------ 143

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV--TGAPFVRPMGN 121
                       + I+    D   GVY      +   S++      +  T       + +
Sbjct: 144 ---------TQDITIQEFTAD-KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES 193

Query: 122 VSAIAGEPLYLGCPVA--------GYPIESITWQ-------------KGVQQLPLNRRQK 160
            +   G  + L   V+        G P  +I +               G +         
Sbjct: 194 KTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFS 253

Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
           + P+G L  E+   D D   +WC A   Q     + V ++ +   K
Sbjct: 254 ITPDGHLFKESATYD-DTAKFWCVAKLYQQ-IEDETVEVAASTSRK 297

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 58.7 bits (141), Expect = 3e-10
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 23/143 (16%)

Query: 121 NVSAIAGEPLYLGCPVAGYP----IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
               +AG+   L   VAG        + TW K  Q    N         TL + +   + 
Sbjct: 11  KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSE- 62

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTK--G 231
           + G Y  T  +    +S ++    +     +     +P    + S     +   V    G
Sbjct: 63  NAGSYKVTVQDTDTMTSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGG 121

Query: 232 DPP-----LTISWLKNGLPILSA 249
             P     L  SW K    I + 
Sbjct: 122 KTPADNYELHYSWSKGEDVIDTT 144

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 83.7 bits (207), Expect = 2e-20
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 10/140 (7%)

Query: 83  KDHDRGVYWCTATNKQGRSSS---QNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAG 138
           K            NK     +   +         P F + + ++  + G      C V G
Sbjct: 8   KASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEG 67

Query: 139 YPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSS 194
           YP   + W K    +  +R  ++  +     +L I  V  D D   Y C A N  G ++ 
Sbjct: 68  YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTCKAVNSLGEATC 126

Query: 195 QNVHISVTVPPKIAPFEFQP 214
               + V    K    E + 
Sbjct: 127 -TAELLVETMGKEGEGEGEG 145

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P      +   +  G      C   G P P + W  D  P+   RH         ++   
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF--------QIDYD 93

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
                       +L I  V  D D   Y C A N  G ++ 
Sbjct: 94  EEGNC-------SLTISEVCGD-DDAKYTCKAVNSLGEATC 126

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP-FEFQP---DLHSGDRAGVQCLVT 229
           K            NK   +    +       P + P F       ++  G  A   C V 
Sbjct: 8   KASGSSPTSPINANKVE-NEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66

Query: 230 KGDPPLTISWLKNGLPI 246
            G P   + W K+  P+
Sbjct: 67  -GYPDPEVMWFKDDNPV 82

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 85.2 bits (210), Expect = 2e-20
 Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 37/210 (17%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
           T      V + C+ +     ++S                        + +P   R     
Sbjct: 20  TENKNKTVVIPCLGS-ISNLNVSL----------------CARYPEKRFVPDGNRISWDS 62

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF----VRPMGNVSAIAGE 128
                I +       G+ +C A        S    + V G       + P   +    GE
Sbjct: 63  KKGFTIPSYMIS-YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121

Query: 129 PLYLGCPVAGYPIE--SITWQKGVQQLPLNR-----------RQKVFPNGTLLIENVQKD 175
            L L C             W+    +    +            +      TL I+ V + 
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
            D+G+Y C A++    +   +  + V   P
Sbjct: 182 -DQGLYTCAASSGLM-TKKNSTFVRVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.4 bits (143), Expect = 7e-11
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 15/160 (9%)

Query: 112 GAPFVRPM------GNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVF-P 163
            +PF+  +        ++    + + + C  +   +  S+  +   ++   +  +  +  
Sbjct: 3   RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS 62

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP----DLHSG 219
                I +       G+ +C A        S  ++I V V  +I      P    +L  G
Sbjct: 63  KKGFTIPSYMIS-YAGMVFCEAKINDESYQS-IMYIVVVVGYRIYDVVLSPSHGIELSVG 120

Query: 220 DRAGVQCLVT-KGDPPLTISWLKNGLPILSAMGVGRKGNP 258
           ++  + C    + +  +  +W            V R    
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 160

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 84.2 bits (208), Expect = 3e-20
 Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 25/184 (13%)

Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
           ++      +    + W+     +A  + +          +    +   ++  NG L I+N
Sbjct: 17  NIPNFQMTDDIDEVRWERGSTLVAEFKRKM---------KPFLKSGAFEILANGDLKIKN 67

Query: 81  VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP 140
           + +D D G Y  T  +  G +   N  + +     V     +         L C V    
Sbjct: 68  LTRD-DSGTYNVTVYSTNG-TRILNKALDLRILEMVSKP--MIYWECSNATLTCEVLEGT 123

Query: 141 IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200
              +   +G + L   R++ +    T         + R  + C A N+  + S       
Sbjct: 124 DVELKLYQGKEHLRSLRQKTMSYQWT---------NLRAPFKCKAVNRVSQESE---MEV 171

Query: 201 VTVP 204
           V  P
Sbjct: 172 VNCP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 80.4 bits (198), Expect = 7e-19
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 117 RPMGNVSAIAGEPLYLGCPV--AGYPIESITWQKG----------VQQLPLNRRQKVFPN 164
           R  G V    G  + L  P       I+ + W++G          ++    +   ++  N
Sbjct: 1   RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60

Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL-HSGDRAG 223
           G L I+N+ +D D G Y  T  +  G +   N  + + +   ++    +P +      A 
Sbjct: 61  GDLKIKNLTRD-DSGTYNVTVYSTNG-TRILNKALDLRILEMVS----KPMIYWECSNAT 114

Query: 224 VQCLVTKGDPPLTISWLKNGLPILS 248
           + C V +G     +   +    + S
Sbjct: 115 LTCEVLEGTDV-ELKLYQGKEHLRS 138

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 106 VHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP- 163
           + +    AP     + N +   GE + + C  +G P   I W K  + L  +    +   
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
           N  L I  V+K+ D G+Y C A +  G +  +     +    +    E
Sbjct: 63  NRNLTIRRVRKE-DEGLYTCQACSVLGCAKVE-AFFIIEGAQEKTNLE 108

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +      QT   G  + + C A+GNP P I W  D   L  D                
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--------------- 55

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                     N  L I  V+K+ D G+Y C A +  G +  +     + GA 
Sbjct: 56  ---GIVLKDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVE-AFFIIEGAQ 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 201 VTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
           +TV  ++AP     +L +     G+   V C  + G+PP  I W K+   ++ 
Sbjct: 3   LTVLERVAP-TITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVE 53

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 101 SSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RR 158
               +       AP F+    +   + G+ + L C ++  P   + W++  + +  N  R
Sbjct: 3   HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62

Query: 159 QKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
             ++ +     TLLI++V K  D G Y  +A N+ G ++  N  + VT  P    
Sbjct: 63  ISLYQDNTGRVTLLIKDVNKK-DAGWYTVSAVNEAGVTTC-NTRLDVTARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 25/121 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P  IYK   + +  G  V L+C  +  P P + WK +   +  +                
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN---------------- 59

Query: 63  PLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVR 117
               R  ++ +     TLLI++V K  D G Y  +A N+ G ++  N  + VT  P    
Sbjct: 60  --TDRISLYQDNTGRVTLLIKDVNKK-DAGWYTVSAVNEAGVTTC-NTRLDVTARPNQTL 115

Query: 118 P 118
           P
Sbjct: 116 P 116

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 78.1 bits (193), Expect = 6e-19
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S  Q+  +   Q L PG  + L+C+A G+P PH  W  +  PL  +              
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------------- 47

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                           ++  V  +  +G YWC   N +    S+ V I +
Sbjct: 48  -----------TKKLYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIII 85

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 112 GAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLI 169
           G+         +   + G  L L C   G PI    W K    L              ++
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE------TKKLYMV 54

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
             V  +  +G YWC   N +    S+ V I +    
Sbjct: 55  PYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 77.1 bits (190), Expect = 2e-18
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 27/109 (24%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            QL+ +     + PG  V+L C     P+P I W  DG PL                   
Sbjct: 11  VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------------- 54

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISV 110
                    P+  L++  +    D+G Y C AT+       S+ V IS+
Sbjct: 55  ---------PSPVLILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 74.8 bits (184), Expect = 1e-17
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTL 167
           S       V      +   G  + L C V   P   I W K    LPL       P+  L
Sbjct: 6   SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVL 59

Query: 168 LIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVP 204
           ++  +    D+G Y C AT+       S+ V IS+  P
Sbjct: 60  ILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 99  GRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR 157
           G S S  + +    AP F   + + + I G+   L C V G P+  ITW    Q +   R
Sbjct: 1   GSSGSSGMEV----APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR 56

Query: 158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
                    L I++   + D G Y C A N  G+ S 
Sbjct: 57  STCEAGVAELHIQDALPE-DHGTYTCLAENALGQVSC 92

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 68.5 bits (168), Expect = 3e-15
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 24/100 (24%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
            F        +  G    L+C   G P P I+W L+G P+   R   +            
Sbjct: 13  SFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA----------- 61

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
                       L I++   + D G Y C A N  G+ S 
Sbjct: 62  --------GVAELHIQDALPE-DHGTYTCLAENALGQVSC 92

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 77.6 bits (191), Expect = 3e-18
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 11/119 (9%)

Query: 101 SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQ 159
           SS  +  ++V G P +       A+ GE   + C +   P  + I W      L      
Sbjct: 2   SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61

Query: 160 KVF---------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
           +              TL I N+ +   + +Y CTA N  G S ++ + +         P
Sbjct: 62  RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSEMSGP 119

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P +I     Q    G    +KC     P P  I+W      L           G   V+ 
Sbjct: 14  PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL------ESGTSGRYTVET 67

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
           +            TL I N+ +   + +Y CTA N  G S ++ + +   G+    P
Sbjct: 68  ISTEEGVI----STLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSEMSGP 119

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 192 SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
           SS  +  ++V  PP I+  + Q     G++  ++C +    PP  I+W      + S
Sbjct: 2   SSGSSGTLTVNGPPIISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)

Query: 99  GRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR 157
           G S S          P F++  G+++   G+   + C V+G P   ++WQ   + +  + 
Sbjct: 1   GSSGSSGF------RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS 54

Query: 158 RQKVF--PNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
             K+    NG  +L+IE V    D G+Y C ATN+ G++S  ++ + V    
Sbjct: 55  AHKMLVRENGVHSLIIEPVTSR-DAGIYTCIATNRAGQNSF-SLELVVAAKE 104

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 74.3 bits (183), Expect = 2e-17
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 21/114 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P  +      T+Q G    + C  +G PTP +SW+LDG P+  D                
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAH------------- 56

Query: 63  PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
               +  V  NG  +L+IE V    D G+Y C ATN+ G++S  ++ + V    
Sbjct: 57  ----KMLVRENGVHSLIIEPVTSR-DAGIYTCIATNRAGQNSF-SLELVVAAKE 104

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 110 VTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG--- 165
           ++  P  V  + + +  +           G P  +  W K  + +    + K+  +    
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195
            L I       D G+Y CT  N  G  SS 
Sbjct: 63  FLEIHKTDTS-DSGLYTCTVKNSAGSVSSS 91

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 67.7 bits (166), Expect = 6e-15
 Identities = 21/104 (20%), Positives = 28/104 (26%), Gaps = 27/104 (25%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
             +      T+           ATG P P   W  DG  +                    
Sbjct: 8   VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG----------------- 50

Query: 64  LNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
              + K+  +     L I       D G+Y CT  N  G  SS 
Sbjct: 51  --GKYKLSEDKGGFFLEIHKTDTS-DSGLYTCTVKNSAGSVSSS 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 73.1 bits (180), Expect = 4e-17
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 8/95 (8%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
            P  +     +   AG    L     G P  + TW  G     L     V       ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
             + ++  D G Y     N+ G   +      V V
Sbjct: 62  FPSAKRA-DSGNYKLKVKNELGEDEAI---FEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 24/111 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++    +  ++ G   +L+    G P P  +W +                        
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGD-------------------SGA 43

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            L     V       ++   + ++  D G Y     N+ G        + V
Sbjct: 44  ALAPELLVDAKSSTTSIFFPSAKRA-DSGNYKLKVKNELG-EDEAIFEVIV 92

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 73.2 bits (180), Expect = 6e-17
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PN 164
             T A   +    +++   GE     C   G P+ ++TW +  Q L  + R +V      
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69

Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
            T  I +VQ   D G Y     N +G+  +
Sbjct: 70  STFEISSVQAS-DEGNYSVVVENSEGKQEA 98

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 19/102 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
            +++ K    T+  G      C   G P P ++W   G  L    RH+            
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY------ 68

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
                        T  I +VQ   D G Y     N +G+  +
Sbjct: 69  -----------KSTFEISSVQAS-DEGNYSVVVENSEGKQEA 98

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 196 NVHISVTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
           + H   +    +A         S     G+ A   C    G+P  T++WL+ G  + +
Sbjct: 2   HHHHHHSSKTTLAA-RILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLST 57

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 17/203 (8%)

Query: 20  VSLKCIATGNPTP-----HISWKLDGYP--LAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
           ++++C              + W+++           E+      +  Q+  L + Q    
Sbjct: 19  MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLG 78

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPLY 131
           N  L I +V+   D GVY C  +   G +  + + + V            V         
Sbjct: 79  NAALQITDVKLQ-DAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHE 135

Query: 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTAT 186
           L C   GYP   + W     Q+   +           + NV            +++CT  
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFR 195

Query: 187 NKQGRSSSQNVHISVTVPPKIAP 209
                  +    + +   P   P
Sbjct: 196 RLDP-EENHTAELVIPELPLAHP 217

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 35/167 (20%)

Query: 109 SVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIES-----ITWQKGVQQLPLNRRQKVFP 163
           +VT      P        G  + + C              + W+   + +      +   
Sbjct: 3   TVTV-----PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDL 57

Query: 164 ---------------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
                                N  L I +V+   D GVY C  +   G +  + + + V 
Sbjct: 58  KVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ-DAGVYRCMISY--GGADYKRITVKVN 114

Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
            P                   + C    G P   + W  +   +LS 
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSG 160

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           I           L C A G P   + W             + +++   +       R +K
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAEVIWT-----------SSDHQVLSGKTTTTNSKREEK 172

Query: 70  VFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
           +F    TL I          +++CT         +    + +   P   P
Sbjct: 173 LFNVTSTLRI----NTTTNEIFYCTFRRLDP-EENHTAELVIPELPLAHP 217

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 24/103 (23%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           +FIQ     ++  G    +    +G P P +SW L+G  +  D                 
Sbjct: 7   RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL--------------- 51

Query: 64  LNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
              +  V   G  +L+ E V+   D G Y C A N+ G ++  
Sbjct: 52  --HKMIVSEKGLHSLIFEVVRAS-DAGAYACVAKNRAGEATFT 91

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 70.4 bits (173), Expect = 6e-16
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIE 170
           F++   N+S   G    +   V+G P   ++W    + +  +   K+  +     +L+ E
Sbjct: 8   FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQ 195
            V+   D G Y C A N+ G ++  
Sbjct: 68  VVRAS-DAGAYACVAKNRAGEATFT 91

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 71.2 bits (175), Expect = 4e-16
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 23/113 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P      + Q+++ G  V +     G P P +SW  +  P+  D+               
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ--------------- 50

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
              RR      G    L I   ++  D G Y C A N+ G        + V G
Sbjct: 51  ---RRFAEEAEGGLCRLRILAAERG-DAGFYTCKAVNEYGARQC-EARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNG---TL 167
            P F   + + S   G+ + +   V G P   ++W +  Q +  + RR      G    L
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSS 194
            I   ++  D G Y C A N+ G    
Sbjct: 65  RILAAERG-DAGFYTCKAVNEYGARQC 90

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 15/100 (15%)

Query: 16  PGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
                 +     GNP P + W  +G  L        K  +                  +G
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY------------HG 62

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
            L ++N     + G Y   A N+ G    + +     G P
Sbjct: 63  CLQLDNPTHM-NNGDYTLIAKNEYG-KDEKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP------ 163
           V  AP +  + +    +     +   V G P  ++ W      L  ++            
Sbjct: 1   VHFAPTITFLESP--TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58

Query: 164 --NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
             +G L ++N     + G Y   A N+ G    + +       P I
Sbjct: 59  EYHGCLQLDNPTHM-NNGDYTLIAKNEYG-KDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 201 VTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           V   P I   E      S     +   V  G+P   + W  NG  +
Sbjct: 1   VHFAPTITFLESPT---SDHHWCIPFTVK-GNPKPALQWFYNGAIL 42

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 73.7 bits (181), Expect = 5e-16
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 88  GVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQ 147
             Y   ++    R        S   AP ++    V    G  + + C V  YP  +I+W 
Sbjct: 1   ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWF 53

Query: 148 KGVQQLPLNRRQKVF-----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
           +  Q LP +    +          L +    ++ D G Y CTA N+ G   S    +   
Sbjct: 54  RDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN-DFGNYNCTAVNRIG-QESLEFILVQA 111

Query: 203 VPP 205
             P
Sbjct: 112 DTP 114

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 38/210 (18%), Positives = 57/210 (27%), Gaps = 39/210 (18%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
                G  V++ C     P+  ISW  DG  L    + N                     
Sbjct: 28  VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP-------------- 73

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA----- 126
               L +    ++ D G Y CTA N+ G   S    +     P    +  V   +     
Sbjct: 74  SASYLEVTPDSEN-DFGNYNCTAVNRIG-QESLEFILVQADTPSSPSIDQVEPYSSTAQV 131

Query: 127 --GEPLYLG-CPVAGYPIE-----SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
              EP   G  P+  Y  E        W             +    G + I  ++ +   
Sbjct: 132 QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK-----EASMEGIVTIVGLKPET-- 184

Query: 179 GVY--WCTATNKQGRSSSQNVHISVTVPPK 206
             Y     A N +G           T P +
Sbjct: 185 -TYAVRLAALNGKGLGEISAASEFKTQPVQ 213

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
           +     G+ L L C +      SI W +   QL  + R ++     + +++     D G+
Sbjct: 12  SFLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRI-TGEEVEVQDSVPA-DSGL 68

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAP 209
           Y C  ++  G S +    ++V+      P
Sbjct: 69  YACVTSSPSG-SDTTYFSVNVSDALPSGP 96

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 23/107 (21%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             + PG  + L+C    +    I+W  DG                    QL  + R ++ 
Sbjct: 13  FLVHPGDLLQLRCRLRDDV-QSINWLRDG-------------------VQLAESNRTRI- 51

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
               + +++     D G+Y C  ++  G S +    ++V+ A    P
Sbjct: 52  TGEEVEVQDSVPA-DSGLYACVTSSPSG-SDTTYFSVNVSDALPSGP 96

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 70.4 bits (173), Expect = 7e-16
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 108 ISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
            ++  AP     M +     G+       V   P   + W     +L  + +        
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSS 194
             TL I +   D D G Y    TN +G +S 
Sbjct: 63  VLTLEILDCHTD-DSGTYRAVCTNYKGEASD 92

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 20/114 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
           P++  +     +  G            PT  + W  +G  L    +    N  G      
Sbjct: 9   PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL---- 64

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
                        TL I +   D D G Y    TN +G +S     + VTG  +
Sbjct: 65  -------------TLEILDCHTD-DSGTYRAVCTNYKGEASD-YATLDVTGGDY 103

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
            P  ++   +    AGE + L   V G    + TW K  +Q+  +   KV  +     L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           I   +++   G Y     NK G   +Q V+++V   P
Sbjct: 67  ILAARQE-HCGCYTLLVENKLGSRQAQ-VNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 18/112 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQ+I     Q ++ G  V L    TG      +W      +               ++  
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE----------HMKVE 57

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                        L I   +++   G Y     NK G   +Q V+++V   P
Sbjct: 58  NSEN------GSKLTILAARQE-HCGCYTLLVENKLGSRQAQ-VNLTVVDKP 101

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 17/99 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V  +C A GNP P + W  +G     +     +RIG  +V+           
Sbjct: 18  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRN---------- 62

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            + +L++E+V    D+G Y C   N+ G  +    H+ V
Sbjct: 63  QHWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 113 AP-FVRPMG----NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----P 163
           AP +           +  A   +   CP  G P+ ++ W K  ++     R   +     
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
           + +L++E+V    D+G Y C   N+ G  +    H+ V
Sbjct: 64  HWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDV 99

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 70.0 bits (171), Expect = 5e-15
 Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 27/188 (14%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
              V+     +  P   + WK     +A   +         +      NR      +G+L
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFK------NRVYLDTVSGSL 62

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV 136
            I N+    D   Y   + N      +    + V           +         L C V
Sbjct: 63  TIYNLTSS-DEDEYEMESPNITD---TMKFFLYV----LEMVSKPMIYWECSNATLTCEV 114

Query: 137 AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196
                  +   +G + L               +     +  R  + C A N   R S ++
Sbjct: 115 LEGTDVELKLYQGKEHLR--------SLRQKTMSYQWTN-LRAPFKCKAVN---RVSQES 162

Query: 197 VHISVTVP 204
               V  P
Sbjct: 163 EMEVVNCP 170

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 67.8 bits (165), Expect = 7e-15
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQ 60
           PQ+  +   Q+   G  VS  C A  +       +W  D   L     EN   +      
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL------ 64

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                  + +     L + NV+     G Y C  +N  G S S    +++
Sbjct: 65  --RAQGGELMEYTTILRLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-------------NRRQKVFPNGTL 167
             SAI G  +   C  A      +T+        L                + +     L
Sbjct: 19  TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
            + NV+     G Y C  +N  G S S    +++
Sbjct: 79  RLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 67.3 bits (165), Expect = 8e-15
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TL 167
           AP     + + +   G   +    V G P     W K   ++  + R   +        L
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQ 195
           +I +V  + D       A N  G +SS 
Sbjct: 65  VIRDVTGE-DSASIMVKAINIAGETSSH 91

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 26/104 (25%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           K  +    QT+  G     +    G P P   W  +G  +                    
Sbjct: 7   KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD---------------- 50

Query: 64  LNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
             R    +P      L+I +V  + D       A N  G +SS 
Sbjct: 51  --RIYWYWPEDNVCELVIRDVTGE-DSASIMVKAINIAGETSSH 91

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.5 bits (165), Expect = 8e-15
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 26/107 (24%)

Query: 6   IYKFIQQTLQPGPPVSLKCIA-TGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLP 63
           + +   Q+++PG  V+  C A + +P   + W +L    L                    
Sbjct: 14  VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---------------- 57

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                 +  NG L I NVQ   D G Y CT +N           + V
Sbjct: 58  ------MDFNGILTIRNVQPS-DAGTYVCTGSNMFA-MDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 116 VRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
           V    + S   G  +   C   +  P  ++ W +       +R   +  NG L I NVQ 
Sbjct: 14  VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGILTIRNVQP 71

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTV 203
             D G Y CT +N           + V V
Sbjct: 72  S-DAGTYVCTGSNMFA-MDQGTATLHVQV 98

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 101 SSSQNVHISVTGAP--FVRPMGNVSAI---AGEPLYLGCPVAGYPIESITWQKGVQQLPL 155
           + +Q V I     P     P           GE L L  P  G P   + W KG   L  
Sbjct: 8   TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT 67

Query: 156 NRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           +R      +      +    +  D G Y  +   +     +  + I V    
Sbjct: 68  SRVHVRTSDFDTVFFVRQAARS-DSGEYELSVQIENM-KDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 19/102 (18%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
             + G  ++L     G P P + W   G PL   R   +                     
Sbjct: 35  IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF----------------- 77

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
           +    +    +  D G Y  +   +     +  + I V    
Sbjct: 78  DTVFFVRQAARS-DSGEYELSVQIENM-KDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 192 SSSQNVHI-SVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           + +Q V I  +  PPKI              G++  +      G P   + W K G P+
Sbjct: 8   TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPL 65

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNG---TL 167
           GA     + +     G  +   C +  Y     +TW  GV+QL  + + ++        L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSS 194
            ++++ K  D G Y C   N  G  SS
Sbjct: 61  YVKDITKL-DDGTYRCKVVNDYGEDSS 86

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 21/105 (20%)

Query: 12  QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQK 69
              + G  V   C          ++W      L   +++E     G A            
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA------------ 58

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                 L ++++ K  D G Y C   N  G  SS    + V G  
Sbjct: 59  -----ILYVKDITKL-DDGTYRCKVVNDYGEDSSY-AELFVKGVR 96

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
               + ++    G+ L L C +     +SI W +   QL  + R ++     + + +   
Sbjct: 12  VPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIP 69

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVT 202
             D G+Y C  ++  G S +    ++V+
Sbjct: 70  A-DSGLYACVTSSPSG-SDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 23/100 (23%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             + PG  + L+C         I+W  DG                     L  + R ++ 
Sbjct: 19  LLVHPGDLLQLRCRLRD-DVQSINWLRDGVQ-------------------LVESNRTRI- 57

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
               + + +     D G+Y C  ++  G S +    ++V+
Sbjct: 58  TGEEVEVRDSIPA-DSGLYACVTSSPSG-SDTTYFSVNVS 95

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 67.5 bits (164), Expect = 1e-14
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
              L  G  + L C A       I +  + YP    +H++K  +      Q   +  +  
Sbjct: 17  GIELSVGEKLVLNCTARTELNVGIDFNWE-YP--SSKHQHKKLVNRDLKTQ---SGSEMK 70

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
               TL I+ V +  D+G+Y C A++    +   +  + V   PFV 
Sbjct: 71  KFLSTLTIDGVTRS-DQGLYTCAASSGLM-TKKNSTFVRVHEKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 63.6 bits (154), Expect = 3e-13
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 15/106 (14%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-------------RQKVF 162
           + P   +    GE L L C         I +                         +   
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA 208
              TL I+ V +  D+G+Y C A++    +   +  + V   P +A
Sbjct: 72  FLSTLTIDGVTRS-DQGLYTCAASSGLM-TKKNSTFVRVHEKPFVA 115

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 32/217 (14%)

Query: 16  PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDR----HENKNRIGEARVQQLPLNRRQKV 70
            G  V L C  TG    + + W L     A  R        + +          +   ++
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAI 125
              G L++   Q   D   Y C        ++     ++V   P                
Sbjct: 74  DSQGRLVLAEAQVG-DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVME 132

Query: 126 AGEPLYLGCPVA-GYPIESITWQKGVQQLP----------LNRRQKVFPNGTL-----LI 169
                   C    G P   ITW +  Q+L           +  R     +G L     L 
Sbjct: 133 DSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLY 192

Query: 170 ENVQKDHDRGVYWCTAT-----NKQGRSSSQNVHISV 201
             ++KD     + C A       + GR  S   H+++
Sbjct: 193 LRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 69.1 bits (168), Expect = 3e-14
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 29/165 (17%)

Query: 121 NVSAIAGEPLYLGCPVAGYP-IESITW---QKGVQQLPL--------------------N 156
            V  + G+ + L C   G      + W    +   +  L                    +
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL 216
              ++   G L++   Q   D   Y C        ++     ++V   P+          
Sbjct: 69  PPYQLDSQGRLVLAEAQVG-DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127

Query: 217 HSGDRAGVQ----CLVTKGDPPLTISWLKNGLPILSAMGVGRKGN 257
            S      Q    C    G+P   I+W +NG  +   + +  +G 
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 13  TLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            ++        C +  GNP P I+W  +G  L      N     E  +    +     + 
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMN----PEGYMTSRTVREASGLL 185

Query: 72  PNGTLLIENVQKDHDRGVYWCTAT-----NKQGRSSSQNVHISV 110
              + L   ++KD     + C A       + GR  S   H+++
Sbjct: 186 SLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 111 TGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---- 165
           +GAP F   + +     G P+   C VAG P   I W K  +Q+                
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65

Query: 166 -TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
            +L       D D G Y   A N QGR S     + V    
Sbjct: 66  CSLHTTASTLD-DDGNYTIMAANPQGRISC-TGRLMVQAVN 104

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 27/122 (22%), Positives = 36/122 (29%), Gaps = 24/122 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P    K     +  G PV+  C   GNP P I W  DG  ++                  
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK---------------- 52

Query: 63  PLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
             +    +  +     +L       D D G Y   A N QGR S     + V        
Sbjct: 53  --SDHYTIQRDLDGTCSLHTTASTLD-DDGNYTIMAANPQGRISC-TGRLMVQAVNSGPS 108

Query: 119 MG 120
            G
Sbjct: 109 SG 110

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 67.7 bits (165), Expect = 4e-14
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 26/159 (16%)

Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKG------------------V 150
           ++  P +     V+ I GE + L     AG  +  ITW                     V
Sbjct: 1   MSLTPLM-----VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHV 55

Query: 151 QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA-P 209
                 +R     + +L + N++ + D G Y    + K     S      +     I   
Sbjct: 56  TNPKQGKRLNFTQSYSLQLSNLKME-DTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT 114

Query: 210 FEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
              Q   +      + C V   D  ++  W   G  + S
Sbjct: 115 NHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 67.7 bits (165), Expect = 6e-14
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 15/189 (7%)

Query: 17  GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
           G  V+L      G     I+W  +   LA     ++ +  E  V      +R     + +
Sbjct: 13  GESVTLPLEFPAGEKVNFITWLFNETSLA-FIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNV--HISVTGAPFVRPMGNVSAIAGEPLYLG 133
           L + N++ + D G Y    + K     S      +       V     +       L+L 
Sbjct: 72  LQLSNLKME-DTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLT 130

Query: 134 CPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS 192
           C V       S  W+     L             L +    +      Y C A N    +
Sbjct: 131 CSVEDADDNVSFRWEALGNTLS--------SQPNLTVSWDPRISSEQDYTCIAENAVS-N 181

Query: 193 SSQNVHISV 201
            S +V    
Sbjct: 182 LSFSVSAQK 190

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 68.7 bits (167), Expect = 7e-14
 Identities = 34/242 (14%), Positives = 66/242 (27%), Gaps = 39/242 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +  L  G  V + C  + +    +  +                         PL +++ +
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIET------------------------PLPKKELL 43

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
            P     +  +    +     C +       S+    ++V   P              G+
Sbjct: 44  LPGNNRKVYELSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102

Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            L L C V G  P    ++   +G ++L            T  +  V++DH    + C  
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV-LVRRDHHGANFSCRT 161

Query: 186 TNKQG-------RSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDPPLTI 237
                        ++S    +   V P   P    P  L    +  V C +    P    
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEA 221

Query: 238 SW 239
             
Sbjct: 222 QV 223

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 57.2 bits (137), Expect = 7e-10
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 9/126 (7%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
            V    G  + + C  +    + +  +      PL +++ + P     +  +    +   
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIET-----PLPKKELLLPGNNRKVYELSNVQEDSQ 62

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-GDRAGVQCLVTKGDPP--LTI 237
             C +       S+    ++V   P+       P     G    ++C V  G P   LT+
Sbjct: 63  PMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121

Query: 238 SWLKNG 243
             L+  
Sbjct: 122 VLLRGE 127

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 65.2 bits (159), Expect = 9e-14
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 14/96 (14%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
             ++ +  GNP P + W  +G PL   +  +     E  +              G LL  
Sbjct: 23  HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS------------EGCLLFN 70

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
                 + G Y   A N  G ++   ++      PF
Sbjct: 71  KPTHY-NNGNYTLIAKNPLGTANQ-TINGHFLKEPF 104

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 13/114 (11%)

Query: 106 VHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--- 161
           V ++V   P  V        +      +   V G P  ++ W    Q L  ++   V   
Sbjct: 1   VALTVYYPPRVVSLEEPELRLEHC---IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 162 ----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
                  G LL        + G Y   A N  G ++   ++      P      
Sbjct: 58  QEGEISEGCLLFNKPTHY-NNGNYTLIAKNPLGTANQ-TINGHFLKEPFPVDEV 109

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 197 VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           V ++V  PP++   E +P+L       ++ +V  G+PP T+ WL NG P+
Sbjct: 1   VALTVYYPPRVVSLE-EPELRLEHC--IEFVVR-GNPPPTLHWLHNGQPL 46

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           Q  +  G  V   C A G+P P I W      L     ++  R+               V
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV--SAKSNGRL--------------TV 437

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
           FP+GTL +   Q   D G Y C A N  G + S   H+ V 
Sbjct: 438 FPDGTLEVRYAQ-VQDNGTYLCIAANAGG-NDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITW---QKGVQQLPLNRRQKVFPNGTLLIENVQ 173
           R    V    G  +   C   G P  +I W   +K +     N R  VFP+GTL +   Q
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVT 202
              D G Y C A N  G + S   H+ V 
Sbjct: 450 -VQDNGTYLCIAANAGG-NDSMPAHLHVR 476

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 19/116 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
                 G  ++++C         +                              +     
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSN-----------------EQVLSQGSNGSVS 297

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
             NG L  + VQ + D GVY C A  +   + + +V + V           ++A A
Sbjct: 298 VRNGDLFFKKVQVE-DGGVYTCYAMGETF-NETLSVELKVYNFTLHGHHDTLNAAA 351

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 6e-13
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITW--QKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
                 A  G+ L + C      +  +             +       NG L  + VQ +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
            D GVY C A  +   + + +V + V         +
Sbjct: 312 -DGGVYTCYAMGETF-NETLSVELKVYNFTLHGHHD 345

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 13/115 (11%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           SH     +    T        +     G P P + W  +G  L                 
Sbjct: 1   SHMPASVQL--HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT--------- 49

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
           +       +   +G L +       + G Y   A N  G  +S ++  +    PF
Sbjct: 50  EFLEPAANETVRHGCLRLNQPTHV-NNGNYTLLAANPFG-QASASIMAAFMDNPF 102

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 12/88 (13%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKV----------FPNGTLLIENVQKDHDRGVYWC 183
             V G P  S+ W      L                    +G L +       + G Y  
Sbjct: 22  FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTL 80

Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFE 211
            A N  G  +S ++  +    P     E
Sbjct: 81  LAANPFG-QASASIMAAFMDNPFEFNPE 107

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 6e-13
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 18/114 (15%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
             P ++       +  G    LKC A+      +SW             N   +      
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITP----------NGTVMTHGA-- 386

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                 R  V  +GTL   NV    D G+Y C  +N  G +++ +  ++VTG  
Sbjct: 387 ---YKVRIAVLSDGTLNFTNVTV-QDTGMYTCMVSNSVG-NTTASATLNVTGTH 435

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITW----QKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
           +++   G    L C  +   + S++W       +       R  V  +GTL   NV    
Sbjct: 350 DLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTV-Q 407

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           D G+Y C  +N  G +++ +  ++VT   
Sbjct: 408 DTGMYTCMVSNSVG-NTTASATLNVTGTH 435

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 62.7 bits (152), Expect = 7e-13
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 19/118 (16%)

Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-------- 164
                    ++   G+ L L C  +     S+ W              V  N        
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 165 ----GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI----APFEFQP 214
                ++ + NV    D GVY C   +    +    V + V    K      P  ++P
Sbjct: 62  SANQLSITVPNVTL-QDEGVYKCLHYSDSVSTKE--VKVIVLATMKGEFCRYPSHWRP 116

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
            T++ G  ++LKC+ +      + W    G+ +  + +     +  ++ Q          
Sbjct: 11  ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPV---LKNSKYQ-----LLHHS 62

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
               ++ + NV    D GVY C   +    +    V + V    
Sbjct: 63  ANQLSITVPNVTL-QDEGVYKCLHYSDSVSTKE--VKVIVLATM 103

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 62.7 bits (152), Expect = 8e-13
 Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 22/124 (17%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKG------------VQQLPLNRRQ 159
           F+      +   GE +     V    +    +I W KG            +Q      R 
Sbjct: 10  FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69

Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSG 219
                  + I   + +   G Y C  T K    S  +  + V            P++ SG
Sbjct: 70  SRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSC-SFDLEVHESTGTT-----PNIDSG 122

Query: 220 DRAG 223
             +G
Sbjct: 123 PSSG 126

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEA 57
           S    I K    T++ G  ++             P I W        G   +  ++ G+ 
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKW------FKGKWMDLASKAGK- 58

Query: 58  RVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
            +Q      R        + I   + +   G Y C  T K    S  +  + V  +    
Sbjct: 59  HLQLKETFERHSRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSC-SFDLEVHESTGTT 116

Query: 118 P 118
           P
Sbjct: 117 P 117

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 19/114 (16%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           S P ++       +  G    LKC     P   + W L    +                 
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHAS------------ 396

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
               + R  V  +GTL   +V    D GVY C  TN  G +S+ + +++V+ A 
Sbjct: 397 ---RHPRISVLNDGTLNFSHVLL-SDTGVYTCMVTNVAG-NSNASAYLNVSTAG 445

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITW----QKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
           +++   G    L C     P+ S+ W       +     + R  V  +GTL   +V    
Sbjct: 361 DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL-S 417

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
           D GVY C  TN  G +S+ + +++V+       
Sbjct: 418 DTGVYTCMVTNVAG-NSNASAYLNVSTAGTHHH 449

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 15/115 (13%)

Query: 99  GRSSSQNVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN 156
           G S S      V G     +  + +V    G      C ++    E + W      L  N
Sbjct: 1   GSSGSS---GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN 57

Query: 157 RRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
              ++         L +  +    D G  +  A ++  R+S+    + VT  P +
Sbjct: 58  ELNEIDAQPGGYHVLTLRQLALK-DSGTIYFEAGDQ--RASAA---LRVTEKPSV 106

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 22/96 (22%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
            I+      +Q G   + +C  +      + W LD  PL A + +E   + G       
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH---- 70

Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98
                       L +  +    D G  +  A +++
Sbjct: 71 ------------VLTLRQLALK-DSGTIYFEAGDQR 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
           S +  P   ++P+ +     GE + L C ++      + W K  + +  +++  V   G 
Sbjct: 3   SGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT 61

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
              L+I       D G Y C     +  ++S +V    + P 
Sbjct: 62  MAMLVIRGASLK-DAGEYTCEVEASKS-TASLHVEEKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 21/111 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
             +I     Q + PG  V L+C  +   TP + W  D   +    +++     G      
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE-GTMA--- 63

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                         L+I       D G Y C     +  ++S +V    +G
Sbjct: 64  -------------MLVIRGASLK-DAGEYTCEVEASKS-TASLHVEEKASG 99

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
           S +      ++ + +++  A E     C V+   +    W K   ++  ++R  +   G 
Sbjct: 3   SGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGR 61

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
              L+I++V+ + D G Y           S++   ++        P
Sbjct: 62  FHKLVIDDVRPE-DEGDYTFVPDGYALSLSAK---LNFLEIKVSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 33/119 (27%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
           + +Q     T++       KC  +        W  +G  +    R               
Sbjct: 10  EVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRI-------------- 54

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
                  +   G    L+I++V+ + D G Y           S++   ++        P
Sbjct: 55  ------TISHVGRFHKLVIDDVRPE-DEGDYTFVPDGYALSLSAK---LNFLEIKVSGP 103

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 94  ATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ 151
           ++   GR+S     ++V   P  F   + N  A  G    L C ++      + W KG +
Sbjct: 2   SSGSSGRTS---AMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHE 56

Query: 152 QLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
            L    R  +  +G    L I  +  + D G Y C    ++  +      ++V   P
Sbjct: 57  TLRDGDRHSLRQDGARCELQIRGLVAE-DAGEYLCMCGKERTSA-----MLTVRAMP 107

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 28/112 (25%)

Query: 7   YKFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
            KF +    +    G    L+C  +      + W      L              R    
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGD----------RHSLR 67

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
               R        L I  +  + D G Y C    ++  +      ++V   P
Sbjct: 68  QDGARC------ELQIRGLVAE-DAGEYLCMCGKERTSA-----MLTVRAMP 107

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 59.5 bits (144), Expect = 8e-12
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 109 SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-- 165
            V G+    P   NV+ + G    L C V      S+ W    QQ      +K   +   
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 166 ----------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
                     ++ + +V    D G Y C+      +  +   +++V   P
Sbjct: 62  ELVRASWHELSISVSDVSLS-DEGQYTCSLFTMPVK--TSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           T+  G    L C    N    + W       L  D       + + R++ +  +  +   
Sbjct: 17  TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDK---KALRDNRIELVRASWHEL-- 71

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
              ++ + +V    D G Y C+      +  +   +++V G P
Sbjct: 72  ---SISVSDVSLS-DEGQYTCSLFTMPVK--TSKAYLTVLGVP 108

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
           S   +    + P+ + +   G+ + L C ++        W K    +  + R KV   G 
Sbjct: 2   SSGSSGLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGR 59

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
              L+I N   + D G Y            ++   + V   P
Sbjct: 60  IHKLVIANALTE-DEGDYVFAPDAYNVTLPAK---VHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 24/105 (22%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           K +     QT+  G  + LKC  + N      W  +G P+              R++ + 
Sbjct: 9   KILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD----------RLKVVQ 56

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 108
             R         L+I N   + D G Y          +    VH+
Sbjct: 57  KGRIH------KLVIANALTE-DEGDYVFAPDAYNV-TLPAKVHV 93

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 121 NVSAIAGEPLYLGC----PVAGYPIESITWQKGVQQLPL--NRRQKVFP----------- 163
           +V+    E   L C     V       I WQK  + +    +    ++P           
Sbjct: 3   HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62

Query: 164 -NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSG 219
            N +++I  ++   D G Y C     +  +  +     VT+        P     ++ + 
Sbjct: 63  NNLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTS 121

Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPILS 248
           +   + C  + G P   +SWL+NG  + +
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNA 150

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 15/142 (10%)

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ----NVHISVTGAPFVRPMGNVSAIAGE 128
           N +++I  ++   D G Y C     +  +  +     V +SV        + +       
Sbjct: 64  NLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122

Query: 129 PLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYW 182
              + C  +G +P   ++W +  ++L            T L   V             + 
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELY-AVSSKLDFNMTTNHSFM 181

Query: 183 CTATNKQGRSSSQNVHISVTVP 204
           C            N   +    
Sbjct: 182 CLIKYG---HLRVNQTFNWNTA 200

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 121 NVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPL----------------NRRQKVFP 163
           NV+AI G  + L          + +TW     Q  L                +R      
Sbjct: 8   NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT 67

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP-PKIAPFEFQPDLHSGDRA 222
           NG L I NV K+ DRG Y+    ++        + +   V  P I              A
Sbjct: 68  NGALRIYNVSKE-DRGDYYMRMLHETEDQWKITMEVYEMVSKPMI--------YWECSNA 118

Query: 223 GVQCLVTKGDPPLTISWLKNGLPILS 248
            + C V +G     +   +    + S
Sbjct: 119 TLTCEVLEGTDV-ELKLYQGKEHLRS 143

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 27/191 (14%)

Query: 17  GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
           G  V+L            ++W         +   N  +     V +   +R      NG 
Sbjct: 14  GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFK---DRVDLDKTNGA 70

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-TGAPFV-RPMGNVSAIAGEPLYLG 133
           L I NV K+ DRG Y+    ++        + +      P +     N +        L 
Sbjct: 71  LRIYNVSKE-DRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNAT--------LT 121

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
           C V       +   +G + L   R++ +    T         + R  + C A N+  + S
Sbjct: 122 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT---------NLRAPFKCKAVNRVSQES 172

Query: 194 SQNVHISVTVP 204
                  V  P
Sbjct: 173 E---MEVVNCP 180

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 94  ATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL 153
              ++          S     F+          G+     C V       +TW K  ++L
Sbjct: 464 HRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL 523

Query: 154 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
             + +     NG    L I  V+ D D+G Y   A N  G      V ++VT
Sbjct: 524 KQSVKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEI-VFLNVT 573

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRHENKNRIGEARVQ 60
            P+ I K     +  G   +  C    +  P ++W  D   L    ++  +    +    
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY--- 538

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
                          L I  V+ D D+G Y   A N  G      V ++VT
Sbjct: 539 --------------GLTINRVKGD-DKGEYTVRAKNSYGTKEEI-VFLNVT 573

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 12/106 (11%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNG 165
           S +       + +  +  + GE     C ++     +   W  G + +  + R +    G
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62

Query: 166 ---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA 208
               L++       D G    +      ++S     + V      +
Sbjct: 63  RKYILVVREAAPS-DAGEVVFSVRGLTSKAS-----LIVRERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 24/103 (23%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           H  +  +     +  G   S +C ++  + +    W + G                   +
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGG-------------------K 48

Query: 61  QLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGR 100
            +  + R +    G    L++       D G    +      +
Sbjct: 49  TVGSSSRFQATRQGRKYILVVREAAPS-DAGEVVFSVRGLTSK 90

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 192 SSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           SS  + H+ +T   K         +    G+    +C+++         W   G  +
Sbjct: 2   SSGSSGHVGITKRLK--------TMEVLEGESCSFECVLSHESASDPAMWTVGGKTV 50

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 29/192 (15%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
           +++       P  +  W + G               E  +     N          ++ E
Sbjct: 94  LNVYVKVNNGPLGNPIWNISG------DPTRTWNRAELAISTFWPN-------FYQVIFE 140

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY 139
            +   H +G                 +    T  P    + NV   AG+     C   G 
Sbjct: 141 VITSGH-QGYLAIDEVK--------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGR 191

Query: 140 PIESITWQKGVQQLPLNRRQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQGRSS 193
            +           +     +++          +  + N  K  D G Y C    + G   
Sbjct: 192 TVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMIRTEGGVGI 250

Query: 194 SQNVHISVTVPP 205
           S    + V  PP
Sbjct: 251 SNYAELVVKEPP 262

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 16/126 (12%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
           +      +     +  G   + +C A G         L G  +     +        R  
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF- 221

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
                         +  + N  K  D G Y C    + G   S    + V   P   P+ 
Sbjct: 222 ------------IASFNVVNTTK-RDAGKYRCMIRTEGGVGISNYAELVVKEPP--VPIA 266

Query: 121 NVSAIA 126
                +
Sbjct: 267 PPQLAS 272

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 25/174 (14%), Positives = 44/174 (25%), Gaps = 19/174 (10%)

Query: 84  DHDRGVYWCTATNKQGRSSSQNVHI--------SVTGAPFVRPMGNVSAIAGEPLYLGCP 135
           D           N  GR   Q  H+              F   + + S      L +   
Sbjct: 40  DPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVK 99

Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195
           V   P+ +  W           R        L I     +    V +   T+      + 
Sbjct: 100 VNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPN-FYQVIFEVITSGHQGYLAI 152

Query: 196 NVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
           +    +  P    P   +    ++++G  A  QC    G           G+ +
Sbjct: 153 DEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDV 205

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 112 GAP----FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-- 165
           GA       +P+  V    GE  +    +   P     W+   Q L  +   ++  +G  
Sbjct: 1   GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59

Query: 166 -TLLIENVQKDHDRGVYWCTATNKQ 189
             L++ N Q     G     A N +
Sbjct: 60  HILILHNCQLG-MTGEVSFQAANTK 83

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 30/99 (30%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
          +  +      +  G     +   +  P  H  WKL G PL A                  
Sbjct: 7  EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDC-------------- 51

Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQ 98
                ++  +G    L++ N Q     G     A N +
Sbjct: 52 ------EIIEDGKKHILILHNCQLG-MTGEVSFQAANTK 83

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 43/261 (16%), Positives = 79/261 (30%), Gaps = 36/261 (13%)

Query: 15  QPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
             G    L C  T   P   I W    +  AG     +  I   +    P  R   V  +
Sbjct: 16  AAGESAILHCTVTSLIPVGPIQW----FRGAG---PARELIYNQKEGHFP--RVTTVSES 66

Query: 74  G-------TLLIENVQKDHDRGVYWC------TATNKQGRSSSQNVHISVTGAPFVRPMG 120
                   ++ I N+    D G Y+C      +   +    +   + +    +  V    
Sbjct: 67  TKRENMDFSISISNITPA-DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP 125

Query: 121 NVSAIAGEPLYLGCPVAGYPIESIT--WQKGVQQLPLNRRQ--KVFPNGT-----LLIEN 171
              A     +   C   G+    IT  W K   +L   +     V  + +          
Sbjct: 126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV 185

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQ--NVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT 229
           + ++       C   +   +        ++S T+         Q  + + ++  V C V 
Sbjct: 186 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245

Query: 230 KGDP-PLTISWLKNGLPILSA 249
           K  P  L ++WL+NG    + 
Sbjct: 246 KFYPQRLQLTWLENGNVSRTE 266

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 31/152 (20%), Positives = 46/152 (30%), Gaps = 25/152 (16%)

Query: 122 VSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPL---NRRQKVFPNG------------ 165
           VS  AGE   L C V    P+  I W +G         N+++  FP              
Sbjct: 13  VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72

Query: 166 --TLLIENVQKDHDRGVYWCTATNK-----QGRSSSQNVHISVTVPPKIAPFEFQPDLHS 218
             ++ I N+    D G Y+C    K     + +S +         P              
Sbjct: 73  DFSISISNITPA-DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP 131

Query: 219 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSA 249
                  C      P  +T+ W KNG  +   
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFKNGNELSDF 163

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 54.3 bits (131), Expect = 6e-10
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
           S +  P  F   + ++  + G    L C ++      + W  G   L    +  +   G 
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
              L++ N++   D G Y C+  ++   ++     ++VT  P 
Sbjct: 62  MLELVVRNLRPQ-DSGRYSCSFGDQTTSAT-----LTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 29/112 (25%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
           +F +      +  G   +L+C+ +    P + W      L  GD++  +   G       
Sbjct: 10  RFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-GAML---- 63

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                        L++ N++   D G Y C+  ++   ++     ++VT  P
Sbjct: 64  ------------ELVVRNLRPQ-DSGRYSCSFGDQTTSAT-----LTVTALP 97

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
           S +  P  F + +    A  G    L C ++      + W+KG + L    R  +  +G 
Sbjct: 3   SGSSGPARFTQDLKTKEASEGATATLQCELSKVA--PVEWKKGPETLRDGGRYSLKQDGT 60

Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
              L I ++    D G Y C    ++  +      ++V   P
Sbjct: 61  RCELQIHDLSVA-DAGEYSCMCGQERTSA-----TLTVRALP 96

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 32/123 (26%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
           +F Q    +    G   +L+C    +    + WK     L  G R+  K   G       
Sbjct: 10  RFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQD-GTRC---- 62

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
                        L I ++    D G Y C    ++  +      ++V   P  F    G
Sbjct: 63  ------------ELQIHDLSVA-DAGEYSCMCGQERTSA-----TLTVRALPARFTEGSG 104

Query: 121 NVS 123
             S
Sbjct: 105 PSS 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.2 bits (130), Expect = 8e-10
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKG------------VQQLPLNRRQ 159
           FV    +     G  +     VAG  +     + W KG            +Q      R 
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
                  L I + Q     G Y C  + K     S N +++V 
Sbjct: 67  SKVYLFELHITDAQPA-FTGSYRCEVSTKDKFDCS-NFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 9   FIQ----QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           F+       +  G  ++      G      P + W        G   +  +++G+  +Q 
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKW------FKGKWVDLSSKVGQ-HLQL 59

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
                R        L I + Q     G Y C  + K     S N +++V 
Sbjct: 60  HDSYDRASKVYLFELHITDAQPA-FTGSYRCEVSTKDKFDCS-NFNLTVH 107

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN--GTLLIENVQKDHDRGVYW 182
           I+G  + L CP   YP   I WQ   + +  +   K   +    L ++   +    G Y 
Sbjct: 19  ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 76

Query: 183 CTATNKQGRSSSQNVHISVTV 203
           C     +   ++  +++   V
Sbjct: 77  CYPRGSKPEDANFYLYLRARV 97

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 19/91 (20%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
           G  V L C     P   I W+ +   + GD                  + +        L
Sbjct: 21  GTTVILTCPQ--YPGSEILWQHNDKNIGGDE-----------------DDKNIGSDEDHL 61

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVH 107
            ++   +    G Y C     +   ++  ++
Sbjct: 62  SLKEFSELEQSGYYVCYPRGSKPEDANFYLY 92

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 9/126 (7%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
                 G  L+L C       E    +  +++    R  +        + ++++      
Sbjct: 11  VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLR---WLARQLVDIREPE--TQ 65

Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDPP--LTI 237
             C       R+      I     P        P     G+   + C V    P   LT+
Sbjct: 66  PVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTL 124

Query: 238 SWLKNG 243
           + L+  
Sbjct: 125 TLLRGA 130

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 25/211 (11%), Positives = 50/211 (23%), Gaps = 35/211 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
              ++ G  + L C                          +  +     Q+         
Sbjct: 11  VAFVERGGSLWLNCSTNCPRPERGGL--------------ETSLRRNGTQRGLRWL---- 52

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
                  + ++++        C       R+      I     P              GE
Sbjct: 53  ----ARQLVDIREPE--TQPVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGE 105

Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQL---PLNRRQKVFPNGTL-LIENVQKDHDRGVY 181
              L C V G  P    ++T  +G Q+L                L      +++     +
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANF 165

Query: 182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEF 212
            C A     R     +  + + P ++  F  
Sbjct: 166 SCRAELDL-RPHGLGLFENSSAPRELRTFSL 195

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---T 166
           V  A        V A AG    L C VA      +TW K  ++L  + + +V   G    
Sbjct: 9   VVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRR 67

Query: 167 LLIENVQKDHDRGVYWCTATNKQG 190
           L+++   +  + G Y C A  +Q 
Sbjct: 68  LVVQQAGQA-EAGEYSCEAGGQQL 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 23/104 (22%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
              + G   +L C         ++W  DG  L+         +G  R             
Sbjct: 21  VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTR------------- 66

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
               L+++   +  + G Y C A  +     S  +   V G  F
Sbjct: 67  ---RLVVQQAGQA-EAGEYSCEAGGQ---QLSFRL--QVAGQCF 101

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 41/253 (16%), Positives = 72/253 (28%), Gaps = 47/253 (18%)

Query: 13  TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
           +  P         V+L+C        H   + + + L         +     +       
Sbjct: 28  SAWPSAVVPRGGHVTLRC--------HYRHRFNNFML--------YKEDRIHIPIFHGRI 71

Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSS-SQNVHISVTGA--PFVRPMG 120
            Q+ F      +  V   H  G Y C  ++     G S+ S  V I VTG          
Sbjct: 72  FQESFN-----MSPVTTAH-AGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH 125

Query: 121 NVSAIA-GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDH 176
               +  GE + L C            ++G+ + P     ++          I  +    
Sbjct: 126 PGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185

Query: 177 DRGVYWCTATNKQGRS----SSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTK 230
             G Y C  +           S  + I VT P +      QP   + +G+   + C  + 
Sbjct: 186 -AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC--SS 242

Query: 231 GDPPLTISWLKNG 243
                     + G
Sbjct: 243 RSSYDMYHLSREG 255

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 31/205 (15%), Positives = 54/205 (26%), Gaps = 28/205 (13%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             ++ G  V L+C              + + L        ++ G ++     + +     
Sbjct: 128 PLVKSGERVILQC--------WSDIMFEHFFL--------HKEGISKDPSRLVGQIHDGV 171

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTG---APFVRPMGNVSA 124
                 I  +      G Y C  +           S  + I VTG    P +        
Sbjct: 172 SKANFSIGPMMLAL-AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKV 230

Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT 184
            AGE + L C            ++G          +           +      G Y C 
Sbjct: 231 QAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCF 290

Query: 185 A--TNKQGRSS--SQNVHISVTVPP 205
               +     S  S  + +SVT  P
Sbjct: 291 GSFRHSPYEWSDPSDPLLVSVTGNP 315

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 37/235 (15%), Positives = 61/235 (25%), Gaps = 29/235 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V++ C              +G   A DR +   RI + +             
Sbjct: 16  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVK------------- 61

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSA----IAG 127
                 I ++      G Y C     +  S   N+   V    +  P  +V      I+G
Sbjct: 62  ----FYIPDMNSRM-AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG 116

Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
           E +   C             K  +   + +R          +  V   H RG Y C  + 
Sbjct: 117 EKVTFYC-RLDTATSMFLLLKEGRSSHV-QRGYGKVQAEFPLGPVTTAH-RGTYRCFGSY 173

Query: 188 KQGRSS--SQNVHISVT-VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
                S  S+ V + VT      +     P   +            G       W
Sbjct: 174 NNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALW 228

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
           F +   +V   AG P           ++ + WQ+G   +  + +  +   G   TL +  
Sbjct: 11  FSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTLTVRE 69

Query: 172 VQKDHDRGVYWCTATNKQG 190
           V    D+G Y   A + + 
Sbjct: 70  VGPA-DQGSYAVIAGSSKV 87

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 20/99 (20%)

Query: 2  HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQ 60
                K     +  G P   +          + W+  G  + A +++      G     
Sbjct: 8  VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE-GTRH-- 63

Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99
                        TL +  V    D+G Y   A + + 
Sbjct: 64 --------------TLTVREVGPA-DQGSYAVIAGSSKV 87

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 111 TGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--LNRRQKVFPNG--- 165
           +G    + + + +A  GE + L C V+     ++ W K  +++      R ++   G   
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
            L+IE   K  D   Y    T      SS  + + +   P
Sbjct: 65  ILIIEGATKA-DAAEYSVMTTG---GQSSAKLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 23/111 (20%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
              +     T   G  V L+C  +     ++ W  +G  +       K+R    R++   
Sbjct: 9   MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEI---IPGPKSRY---RIRVEG 61

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                       L+IE   K  D   Y    T      SS  + + +   P
Sbjct: 62  KKH--------ILIIEGATKA-DAAEYSVMTTG---GQSSAKLSVDLKSGP 100

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 36/156 (23%)

Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
           +I+G  + L CP+     E++ W+K  Q+LP    +       L++++  +  D G Y C
Sbjct: 11  SISGTSVELTCPL--DSDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVC 62

Query: 184 TATNKQGR------------------------SSSQNVHISVTVPPKIAPFEFQPDLHSG 219
                                           +   +     +   K             
Sbjct: 63  YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122

Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRK 255
               + C    G    TI WLK+G  I         
Sbjct: 123 GSVLLTC----GLTDKTIKWLKDGSIISPLNATKNT 154

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 53.0 bits (126), Expect = 8e-09
 Identities = 29/203 (14%), Positives = 53/203 (26%), Gaps = 62/203 (30%)

Query: 16  PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
            G  V L C    +   ++ W+ +G  L                     + +        
Sbjct: 13  SGTSVELTCPL--DSDENLKWEKNGQELPQK------------------HDKH------- 45

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEP------ 129
           L++++  +  D G Y C        ++   +   V  A   +        A +       
Sbjct: 46  LVLQDFSEVEDSGYYVCYTPASNK-NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDG 104

Query: 130 --------------------LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLI 169
                               + L C +     ++I W K    +      K     T  +
Sbjct: 105 SQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATK----NTWNL 157

Query: 170 ENVQKDHDRGVYWCTATNKQGRS 192
            N  KD  RG Y C    +    
Sbjct: 158 GNNAKD-PRGTYQCQGAKETSNP 179

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 109 SVTGAP--FVRP--MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN 164
           S +  P   + P    +++    E + L C ++       TW K  Q++  +    V  +
Sbjct: 3   SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD 61

Query: 165 G---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           G    L++   +   D G + C               ++V  P 
Sbjct: 62  GRKHRLILPEAKVQ-DSGEFECRTEGVSA-----FFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 21/103 (20%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            T      V L C  +    P  +W  DG  +           G                
Sbjct: 20  LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKH------------- 65

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
               L++   +   D G + C        S+   V +     P
Sbjct: 66  ---RLILPEAKVQ-DSGEFECRTEG---VSAFFGVTVQDPSGP 101

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 53.3 bits (127), Expect = 8e-09
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 34/212 (16%)

Query: 15  QPGPPVSLKCIAT-------GNPTPHISWKLDGYPLAGD---RHENKNRIGEARVQ---Q 61
           Q G  V + C  +        +P  ++ W  DG            N +R  +   Q   +
Sbjct: 13  QEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFR 72

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA-TNKQGRSSSQNVHISVT-----GAPF 115
           L  + ++K   N +L I + +   D G Y+      +  + S Q   +++        P 
Sbjct: 73  LLGDVQKK---NCSLSIGDARM-EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPD 128

Query: 116 VRPMGNVSAIAGEPLYLGCPVA----GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN 171
           +  +  + +  G P  L C +       P  + +W                   + L   
Sbjct: 129 IHFLEPLES--GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE----TTRSSELTLT 182

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQ-NVHISVT 202
            + +       C    +  + +++  V ++V+
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSS---QNVHISVTVPPKIAPFEFQPDLHSGD 220
           N +L I + +   D G Y+      +    S     +++ VT   +     F   L SG 
Sbjct: 81  NCSLSIGDARM-EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGR 139

Query: 221 RAGVQCLVT---KGDPPLTISWLKNGLPILS 248
              + C +    +  PPLT SW  N L  L 
Sbjct: 140 PTRLSCSLPGSCEAGPPLTFSWTGNALSPLD 170

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 111 TGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---T 166
           +GA  F   + N+           C     P  ++TW+KG+ +L  + + +    G    
Sbjct: 6   SGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLR 64

Query: 167 LLIENVQKDHDRGVYWCTATNKQGR 191
           L I  ++K  D   Y C     Q R
Sbjct: 65  LTISALEKA-DSDTYTCDIGQAQSR 88

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 24/98 (24%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
            F +      ++        C  T +P   ++W+     L A  +H+     G       
Sbjct: 10  CFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQE-GLTL---- 63

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 100
                        L I  ++K  D   Y C     Q R
Sbjct: 64  ------------RLTISALEKA-DSDTYTCDIGQAQSR 88

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 109 SVTGAP----FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN 164
           S T       +      V+A+  E + L C +   P   + W K  +++  +    +   
Sbjct: 6   SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKE 64

Query: 165 G---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
                L++  VQ + D G Y C   ++    +     ++VT PP
Sbjct: 65  DTVRRLVLPAVQLE-DSGEYLCEIDDESASFT-----VTVTEPP 102

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 23/109 (21%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKV 70
                   V L C     P   + W  DG  +        +      R            
Sbjct: 23  VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKE-DTVR------------ 68

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
                L++  VQ + D G Y C   ++   S+S  V ++      +   
Sbjct: 69  ----RLVLPAVQLE-DSGEYLCEIDDE---SASFTVTVTEPPVRIIYSG 109

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 16/107 (14%)

Query: 116 VRPMGNVSAIAGEPLYLGC--PVAGYPIESITWQKGVQQL-------------PLNRRQK 160
           +   GN+SA  G  + L C        +  + W++  Q L                 R  
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
             P   L ++++  + D G Y+C        + +  + + V      
Sbjct: 67  PGPGLGLTLQSLTVN-DTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 13  TLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           + + G  + L+C  +        ++W+     LA    +    I            R   
Sbjct: 14  SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISP------SFKDRVAP 67

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
            P   L ++++  + D G Y+C        + +  + + V  +    
Sbjct: 68  GPGLGLTLQSLTVN-DTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 21/134 (15%)

Query: 108 ISVTGAP-FVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNG 165
           ++    P      G ++++ G+ + L CP        ++ W         +  +      
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQ 225
            LL+ +VQ   D G Y C    +   +    VH+ V VPP              +   + 
Sbjct: 61  RLLLRSVQLH-DSGNYSCYRAGRPAGT----VHLLVDVPP--------------EEPQLS 101

Query: 226 CLVTKGDPPLTISW 239
           C        +   W
Sbjct: 102 CFRKSPLSNVVCEW 115

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 28/219 (12%), Positives = 49/219 (22%), Gaps = 38/219 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P         T  PG  V+L C          + W L                       
Sbjct: 7   PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRK-------------------PA 47

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
              +  +       LL+ +VQ   D G Y C    +   +    VH+ V   P       
Sbjct: 48  AGSHPSRWAGMGRRLLLRSVQLH-DSGNYSCYRAGRPAGT----VHLLVDVPP--EEPQL 100

Query: 122 VSAIAGEPLYLGC-----PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN---VQ 173
                     + C            +++   +  Q  P    Q+         +    + 
Sbjct: 101 SCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLA 160

Query: 174 KDHDRGVY---WCTATNKQGRSSSQNVHISVTVPPKIAP 209
                  +        +  G   S+          +  P
Sbjct: 161 VPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDP 199

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 23/210 (10%), Positives = 56/210 (26%), Gaps = 33/210 (15%)

Query: 12  QTLQPGPPVSLKCI-------ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPL 64
             +Q     +  C+              +I WK + + +  +++   NR           
Sbjct: 13  PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA--------- 63

Query: 65  NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSA 124
                     ++   ++   + +         +  ++    + I     P      N+S 
Sbjct: 64  ---------SSVTFTDIASLNIQLTCNILTFGQLEQNVYG-ITIISGLPP--EKPKNLSC 111

Query: 125 IAGEPLYLGC----PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH-DRG 179
           I  E   + C        +   + T +           +      T    +    +    
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171

Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
             W  A N  G+ +S +++       K  P
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVKPNP 201

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 20/203 (9%)

Query: 20  VSLKCIATGNPTP---HISWKLDGYPLA----GDRHENKNRIGEARVQQLPLNRRQKVFP 72
             L C      +     + W             D  E ++R       +  + R      
Sbjct: 22  ADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAG 81

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYL 132
              L I NV    D G Y C   +  G    + +      A       +V       ++L
Sbjct: 82  KAALRIHNVTAS-DSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHL 138

Query: 133 GCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTAT 186
            C   G YP   I W     +        V  +G  L   V      +        CT  
Sbjct: 139 ECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLY-AVAASVIMRGSSGEGVSCTIR 197

Query: 187 NKQGRSSSQNVHISVTVPPKIAP 209
           +            S+++      
Sbjct: 198 SSLL---GLEKTASISIADPFFR 217

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 31/171 (18%), Positives = 47/171 (27%), Gaps = 35/171 (20%)

Query: 106 VHISVTGAPFVRPMGNVSAIAGEPLYLGC---PVAGYPIESITWQK-------------- 148
           +  SV G     P G + A+ GE   L C   P        + W                
Sbjct: 3   LQFSVLG-----PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGK 57

Query: 149 ---GVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199
                Q  P   R  +  +G       L I NV    D G Y C   +       +   +
Sbjct: 58  EVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS-DSGKYLCYFQDG---DFYEKALV 113

Query: 200 SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM 250
            + V    +        +      ++C  T   P   I W  N    +  +
Sbjct: 114 ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV 164

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 111 TGAPFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPL-------------- 155
           +G+     + +++ ++G  + L          + +TW     Q  +              
Sbjct: 3   SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF 62

Query: 156 -NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
             R +    +G L I  VQK  D   Y      K G      + + V  P 
Sbjct: 63  KGRVRLDPQSGALYISKVQK-EDNSTYIMRVLKKTGNEQEWKIKLQVLDPV 112

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 17  GPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
           G  V+L    +       ++W         +    K++  E++ +     R +    +G 
Sbjct: 19  GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFK----GRVRLDPQSGA 74

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           L I  VQK  D   Y      K G      + + V
Sbjct: 75  LYISKVQK-EDNSTYIMRVLKKTGNEQEWKIKLQV 108

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 101 SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK 160
                  I+++         + + +AG  + L C V  +   S+ W    QQ      ++
Sbjct: 27  DDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKR 86

Query: 161 VFPNG------------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
              +             ++ I NV    D G Y C+      R++   V   V   P+
Sbjct: 87  ALRDNRIQLVTSTPHELSISISNVALA-DEGEYTCSIFTMPVRTAKSLVT--VLGIPQ 141

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +T+  G  V LKC    +    + W       L          + + R+Q +     +  
Sbjct: 48  ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA---LRDNRIQLVTSTPHEL- 103

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
               ++ I NV    D G Y C+      R++   V +  
Sbjct: 104 ----SISISNVALA-DEGEYTCSIFTMPVRTAKSLVTVLG 138

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 29/199 (14%)

Query: 16  PGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
               V ++C A        +    +       R        +                  
Sbjct: 22  LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE---------------- 65

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA---PFVRPMGNVSAIAGEPL 130
             +I+++  +   G Y C       R   S  + + VTG    PF+     +  + GE +
Sbjct: 66  -FVIDHMDANK-AGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENI 123

Query: 131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
            L C  A  P +  +  K  +     + Q         +  V  +   G+Y C     + 
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLP-QHQSGEHPANFSLGPVDLNV-SGIYRCYGWYNRS 181

Query: 191 R----SSSQNVHISVTVPP 205
                  S  + + VT   
Sbjct: 182 PYLWSFPSNALELVVTDSI 200

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----LNRRQKVF 162
           S +  P   V P+ +     G+ + +   V       + W K   +L        R +  
Sbjct: 3   SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61

Query: 163 PNG---TLLIENVQKDHDRGVYWCTATNKQ 189
            +G    L+  +V ++ DRG Y       Q
Sbjct: 62  KDGKRHILIFSDVVQE-DRGRYQVITNGGQ 90

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 18/95 (18%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
            +     Q +  G  V +    +      + W  +G  L  +         +AR +   
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSF------KARYRFKK 62

Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98
            +R        L+  +V ++ DRG Y       Q
Sbjct: 63 DGKRH------ILIFSDVVQE-DRGRYQVITNGGQ 90

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 30/148 (20%)

Query: 13  TLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            +  G    L C     +    + W+     L   + +                      
Sbjct: 18  AVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--------------------- 56

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
               L + N       G   C  +   GR+    V + V   P    +   + + G+P  
Sbjct: 57  GRSVLTVRNASLSAA-GTRVCVGSC-GGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE- 113

Query: 132 LGCPVAG-YPIE----SITWQKGVQQLP 154
           + C      P++    S +   G Q+L 
Sbjct: 114 VACTAHKVTPVDPNALSFSLLVGGQELE 141

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 35/257 (13%)

Query: 12  QTLQPGPPVSLKCIATG-NPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
                 P + L C+ +G  P    I+W  DG  +  D            +      +  +
Sbjct: 19  GGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVD------------LSTASTTQEGE 66

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNK----QGRSSSQNVHISVTGAPFVRPMGNVSAI 125
           +    + L  + +       Y C  T +    +  +           + ++         
Sbjct: 67  LASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF 126

Query: 126 AGEPLYLGCPVAGYPIE----SITW--QKGVQQLPLNRRQKVFPNGT-----LLIENVQK 174
             +   + C V           +TW    G       R+++   NGT      L    + 
Sbjct: 127 IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRD 186

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP--FEFQP--DLHSGDRAGVQCLVTK 230
             +   Y C  T+      +     + T  P+ AP  + F       S D+  + CL+  
Sbjct: 187 WIEGETYQCRVTH-PHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN 245

Query: 231 GDPP-LTISWLKNGLPI 246
             P  +++ WL N + +
Sbjct: 246 FMPEDISVQWLHNEVQL 262

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 32/203 (15%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +  G  V+++C  T           +G P   D         +A              
Sbjct: 14  SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKA-------------- 58

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA---PFVRPMGNVSAIAG 127
                 I ++ + H  G Y C   +  G S  S  + + VTG    P +  + +    +G
Sbjct: 59  ---RFSIPSMTEHH-AGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSG 114

Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWC 183
           E + L C         I  ++G  +L      ++ P+G       +  V   H R +  C
Sbjct: 115 ENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSH-RWMLRC 173

Query: 184 TATNKQGR----SSSQNVHISVT 202
             + +         S  + I V+
Sbjct: 174 YGSRRHILQVWSEPSDLLEIPVS 196

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 39/208 (18%)

Query: 13  TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
             +PG        V++ C  T           +  P   DR        +A         
Sbjct: 9   WAEPGSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKA--------- 58

Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTG---APFVRPMGNV 122
                      I ++ +D+  G Y C   +  G S  S  + + +TG    P +  + + 
Sbjct: 59  --------RFSIPSMTEDY-AGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP 109

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDR 178
              +G+ + L C  +  P+++    K     PL   +             +  V   H  
Sbjct: 110 LVTSGKSVTLLC-QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH-G 167

Query: 179 GVYWCTATNKQGR----SSSQNVHISVT 202
           G Y C +++          S  + + V+
Sbjct: 168 GTYRCFSSHGFSHYLLSHPSDPLELIVS 195

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 32/199 (16%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V++ C              +G   A DR +   RI + +             
Sbjct: 13  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVK------------- 58

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPF-----VRPMGNVSAI 125
                 I ++      G Y C     +  S  S  + + VT         V P   V   
Sbjct: 59  ----FYIPDMNSRM-AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI-- 111

Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
           +GE +   C +       +  ++G       +R          +  V   H RG Y C  
Sbjct: 112 SGEKVTFYCRLDTATSMFLLLKEGRSSHV--QRGYGKVQAEFPLGPVTTAH-RGTYRCFG 168

Query: 186 TNKQGRSS--SQNVHISVT 202
           +      S  S+ V + VT
Sbjct: 169 SYNNHAWSFPSEPVKLLVT 187

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 41/253 (16%), Positives = 74/253 (29%), Gaps = 40/253 (15%)

Query: 13  TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
              PGP       V L+C    +      + L             +R G+ +     +  
Sbjct: 11  LAHPGPLVKSEETVILQC---WSDVRFQHFLL-------------HREGKFKDTLHLIGE 54

Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTGA---PFVRPM 119
                      I  + +D   G Y C  +           S  + I +TG    P +   
Sbjct: 55  HHDGVSKANFSIGPMMQDL-AGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQ 113

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIE-NVQKDHDR 178
              + +AGE + L C  +    +     +  +            NGT   +  +      
Sbjct: 114 PGPTVLAGESVTLSC-SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHG 172

Query: 179 GVYWCTA--TNKQGRSS--SQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTK--- 230
           G Y C     +     S  S  + +SVT  P    P   +P   +G+   +     +   
Sbjct: 173 GTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLI 232

Query: 231 GDPPLTISWLKNG 243
            +  L +  +  G
Sbjct: 233 SEEDLNLDLVPRG 245

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 4/110 (3%)

Query: 135 PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
            V  +       +       ++  +    + +L +  +Q + + G Y C       ++  
Sbjct: 52  EVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLE-EAGEYRCEVVVTPLKAQ- 109

Query: 195 QNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNG 243
             V + V   P              +     C  +   P  + I+W K  
Sbjct: 110 GTVQLEVVASPASRLLL-DQVGMKENEDKYMCESSGFYPEAINITWEKQT 158

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 98  QGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR 157
           Q  + ++         P   P+  VS       YL CP+      + +W+          
Sbjct: 486 QSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCE 544

Query: 158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188
                PN  L IEN+      G Y+C A   
Sbjct: 545 PGHQSPNCILFIENLTAQ-QYGHYFCEAQEG 574

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/100 (12%), Positives = 22/100 (22%), Gaps = 28/100 (28%)

Query: 8  KFIQ-----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           F +       +  G  + L      +    + W  +G  +                   
Sbjct: 17 AFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMS---------------- 59

Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQG 99
              +      G   TL I       D   Y C    ++ 
Sbjct: 60 --GSKYIFESIGAKRTLTISQCSLA-DDAAYQCVVGGEKC 96

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 107 HISVTGAP-FVRPM-GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFP 163
            +    +  F + +        G  + L   +A +  E + W K G +      +     
Sbjct: 9   SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAE-VKWLKNGQEIQMSGSKYIFES 67

Query: 164 NG---TLLIENVQKDHDRGVYWCTATNKQG 190
            G   TL I       D   Y C    ++ 
Sbjct: 68  IGAKRTLTISQCSLA-DDAAYQCVVGGEKC 96

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 39/209 (18%)

Query: 13  TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
             +PG       PV+L+C            +   Y L       + +     + ++P   
Sbjct: 9   WAEPGSVITQGSPVTLRC--------QGGQETQEYRL------YREKKTAPWITRIPQEL 54

Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISVTGA---PFVRPMGN 121
            +K        I ++  +H  G Y C   +     S  S  + + VTGA   P +    +
Sbjct: 55  VKKG----QFPIPSITWEH-TGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS 109

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHD 177
               +G  + L C         I  ++G  + P     +    G       +  V     
Sbjct: 110 PVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSR- 168

Query: 178 RGVYWCTATNKQGR----SSSQNVHISVT 202
           R  Y C A +          S  + + V 
Sbjct: 169 RWWYRCYAYDSNSPYEWSLPSDLLELLVL 197

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... Length = 238

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSS----------SQNVHISVTVPPKIAPFEFQ 213
             +L++E         VY+C +   +G  +          +    +    PPK++ FE  
Sbjct: 71  QFSLILELATPS-QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPS 129

Query: 214 PD-LHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
              + +  +A + CL     P  + +SW  NG  + S
Sbjct: 130 KAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 166

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188
             L C      +  + W+     L     +  +     LLI N+ +  D GVY C +  +
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEG-DSGVYQCLSEER 608

Query: 189 QGRSSSQNVHISVTVPPKIAP 209
               +   V     +  K+ P
Sbjct: 609 VKNKTVFQVVAKHVLEVKVVP 629

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 74  GTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA---PFVRPMGNVSAIAGEP 129
             L I  +++    G Y C+  N    S  S  + +  TG    P +      +  +G  
Sbjct: 52  AVLFIPAMKRSL-AGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGD 110

Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
           + L C    Y  +     K     P    ++ +   +  I  V   H  G Y C + + +
Sbjct: 111 VTLQC-QTRYGFDQFALYKEGDPAPYKNPERWYR-ASFPIITVTAAH-SGTYRCYSFSSR 167

Query: 190 GR----SSSQNVHISVT 202
                 + S  + + VT
Sbjct: 168 DPYLWSAPSDPLELVVT 184

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1 Length = 120

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 123 SAIAGEPLYLGCPVA-GYPIESITWQK--GVQQLPLNRRQKVFPNG------TLLIENVQ 173
           S +AG+P  L CPV        +TW K  G   + L  RQ  +          L  E V 
Sbjct: 22  SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 81

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            + D G Y C+A  +     S +  + VT
Sbjct: 82  PN-DNGSYRCSANFQSNLIESHSTTLYVT 109

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK--IAPFEFQPDLHSGDR 221
           NGT  +  VQ     G Y  T      +     + ++V  PPK  + P            
Sbjct: 253 NGTFWLPRVQPF-QEGTYLATIHLPYLQGQ-VTLELAVYKPPKVSLMPATLARAAPGEAP 310

Query: 222 AGVQCLVTKGDP--PLTISWLKNGLP 245
             + CLV+   P   L + W   G P
Sbjct: 311 PELLCLVSHFYPSGGLEVEWELRGGP 336

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 18/88 (20%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +  G  V        +P   + W  +G  +           G  R            
Sbjct: 17 AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR------------ 63

Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQ 98
               L I N Q   D   Y+ TA +++
Sbjct: 64 ----ILFINNCQMT-DDSEYYVTAGDEK 86

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} Length = 253

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 40/165 (24%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-------------LNRRQKVFPNG- 165
                  G+ + L C +       ++W    QQ                ++  K  P   
Sbjct: 9   RWRLVPRGQAVNLRCILKNSQYPWMSW---YQQDLQKQLQWLFTLRSPGDKEVKSLPGAD 65

Query: 166 ---------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNV-----HISVTVPPKIA--- 208
                     L ++           +CT++     ++ Q        ++V    K     
Sbjct: 66  YLATRVTDTELRLQVANMS-QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPP 124

Query: 209 -PFEFQP---DLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
               F+P   ++    +A + CL T   P  + +SW  NG  + S
Sbjct: 125 EVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPL----------------NRRQKVFP 163
           +++A  G  + L        P   ITW     Q  L                 R      
Sbjct: 12  DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71

Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
           NG L I NV+K+ D+G Y+          +   + + V  P
Sbjct: 72  NGALHISNVRKE-DKGTYYMRVLR--ETENELKITLEVFDP 109

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 31/182 (17%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           +  L  G  V + C  + +    +  +                         PL +++ +
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIE------------------------TPLPKKELL 43

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG-NVSAIAGE 128
            P     +  +    +     C +       S+    ++V   P  V           G+
Sbjct: 44  LPGNNRKVYELSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102

Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            L L C V G  P    ++   +G ++L         P        V++DH    + C  
Sbjct: 103 QLTLRCQVEGGAPRAQLTVVLLRGEKELK-REPAVGEPAEVTTTVLVRRDHHGAQFSCRT 161

Query: 186 TN 187
             
Sbjct: 162 EL 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 42/244 (17%), Positives = 78/244 (31%), Gaps = 75/244 (30%)

Query: 4   QLIYKFIQQTLQPG-----PPVSLKCIATGNPTPHISWKLDGYPLAGD----------RH 48
           +++ KF+++ L+        P+  +       T     + D   L  D          R 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRL 134

Query: 49  ENKNRIGEARVQQLPLNRRQKVFPNG------TLLIENVQKDH------DRGVYWCTATN 96
           +   ++ +A + +L     + V  +G      T +  +V   +      D  ++W    N
Sbjct: 135 QPYLKLRQA-LLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 97  KQGRSSS----QNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ 152
                +     Q +   +       P     +     + L        I SI       Q
Sbjct: 192 CNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKL-------RIHSI-------Q 231

Query: 153 LPLNR--RQKVFPNGTLLIENVQKDHDRGVYW------C----TATNKQ---GRSSSQNV 197
             L R  + K + N  L++ NVQ   +    W      C    T   KQ     S++   
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQ---NAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 198 HISV 201
           HIS+
Sbjct: 288 HISL 291

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 27/111 (24%)

Query: 121 NVSAIAGEPLYLGC-----PVAGYPIESITWQKGVQQLPL-------------------- 155
            V    G+ + L C      +    +  +TW +  +   +                    
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 156 -NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
             R      N +L +  ++ + D G Y C        S S ++ + V   P
Sbjct: 69  AARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 17/105 (16%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKG------------VQQLPLNRRQ 159
           F++   +VS   G+   +   V G  +    +I W KG                  +   
Sbjct: 15  FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSA 74

Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
                  L I  V    DRG Y      K    S    +I V  P
Sbjct: 75  SNVYTVELHIGKVVLG-DRGYYRLEVKAKDTCDSC-GFNIDVEAP 117

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 25/112 (22%)

Query: 121 NVSAIAGEPLYLGCPVAG-YPIESITWQKGV---------------QQLPLNRRQKVFPN 164
            V  + G P+ L C  +    I +  W +G                 ++   +  +    
Sbjct: 6   EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK 65

Query: 165 G-------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
           G       +L IEN  +  D G+Y C      G  + Q V  S+ V P++ P
Sbjct: 66  GHISEGDVSLTIENSVES-DSGLYCCRVEIP-GWFNDQKVTFSLQVKPELVP 115

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E Length = 246

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 41/166 (24%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP---------------LNRRQKVFPN 164
             V + +G  + + C    +   ++ W    +Q P                   Q V  +
Sbjct: 9   SWVISKSGTSVKIECRSLDFQATTMFW---YRQFPKQSLMLMATSNEGSKATYEQGVEKD 65

Query: 165 G-----------TLLIENVQKDHDRGVYWCTATN---------KQGRSSSQNVHISVTVP 204
                       TL + +   + D   Y C+A             G   +    +    P
Sbjct: 66  KFLINHASLTLSTLTVTSAHPE-DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFP 124

Query: 205 PKIAPFE-FQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
           P++A FE  + ++    +A + CL T   P  + +SW  NG  + S
Sbjct: 125 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 170

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 Length = 122

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 123 SAIAGEPLYLGCPVA-GYPIESITWQK--GVQQLPLNRRQKVFPNGT---------LLIE 170
           SA  GE   + CPV       ++TW K  G   +PL    +++ +           L  +
Sbjct: 25  SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            +    D G Y C+        +S +V I V 
Sbjct: 85  PIHLS-DNGSYSCSTNFNSQVINSHSVTIHVR 115

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 17/131 (12%)

Query: 132 LGCPVAGYPIE----SITWQK---GVQQLPLNRRQKVFPN-----GTLLIENVQKDHDRG 179
           + C V     +      +W      V       R++ F +       L I +     +  
Sbjct: 23  VTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWL-NGK 81

Query: 180 VYWCTATNK---QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-L 235
            + C   +         + +        P++       +  + D+  + C++T   P  +
Sbjct: 82  EFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDI 141

Query: 236 TISWLKNGLPI 246
           T+ W  NG P 
Sbjct: 142 TVEWESNGQPA 152

>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A 1t6w_A Length = 97

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 33  HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92
            + W+                + E + +    +   ++  NG L I+N+ +D D G Y  
Sbjct: 29  EVRWE-----------RGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNV 76

Query: 93  TATNKQGRS 101
           T  +  G  
Sbjct: 77  TVYSTNGTR 85

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} Length = 279

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 43/168 (25%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP---------------LNRRQKVFPN 164
             V + +G  + + C    +   ++ W    +Q P                   Q V  +
Sbjct: 32  SWVISKSGTSVKIECRSLDFQATTMFW---YRQFPKQSLMLMATSNEGSKATYEQGVEKD 88

Query: 165 G-----------TLLIENVQKDHDRGVYWCTATNKQGRSSS-------QNVHISVTVPPK 206
                       TL + +   + D   Y C+A +    +++         + ++  +   
Sbjct: 89  KFLINHASLTLSTLTVTSAHPE-DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNV 147

Query: 207 IAP--FEFQP---DLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
             P    F+P   ++    +A + CL T   P  + +SW  NG  + S
Sbjct: 148 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 195

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 Length = 344

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 35/200 (17%)

Query: 86  DRGVYWCTATNKQ---GRSSSQNVHISVTGAPFVRPMGNVS-AIAGEPLYLGCPVAGYPI 141
           D  VY+CT +      G+ +   V  + T  P V P+   S + +G    LGC V  Y  
Sbjct: 90  DTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 149

Query: 142 ESIT--WQKG-----VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
           E +T  W  G     V   P   +     + + ++           Y C   +K   +  
Sbjct: 150 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKV 209

Query: 195 QN-----------------------VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
                                            P++       D  + ++  + CLV   
Sbjct: 210 DKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF 269

Query: 232 DP-PLTISWLKNGLPILSAM 250
            P  + + W  NG P  +  
Sbjct: 270 YPSDIAVEWESNGQPENNYK 289

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 35/248 (14%), Positives = 57/248 (22%), Gaps = 49/248 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
               PG  V L C         I+W LD                             +V 
Sbjct: 16  YPDAPGEMVVLTC--DTPEEDGITWTLDQ--------------------------SSEVL 47

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
            +G  L   V++  D G Y C    +    S   +H    G  +   +           +
Sbjct: 48  GSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDG-IWSTDILKDQKEPKNKTF 106

Query: 132 LGCPVAGYPIE-SITWQKGVQQLP----LNRRQKVFPNGTLLIE--------NVQKDHDR 178
           L C    Y    +  W   +         + R    P G                     
Sbjct: 107 LRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYE 166

Query: 179 GVYWCTATNK-QGRSSSQNVHISVTV------PPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
               C   +       S  + + V            + F  +  +       +Q    K 
Sbjct: 167 YSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKN 226

Query: 232 DPPLTISW 239
              + +SW
Sbjct: 227 SRQVEVSW 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.98
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.98
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.97
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.96
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.96
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.96
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.96
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.96
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.96
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.96
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.95
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.95
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.95
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.95
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.95
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.95
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.95
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.95
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.95
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.95
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.95
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.94
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.94
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.94
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.94
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.94
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.94
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.94
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.94
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.94
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.94
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.94
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.94
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.94
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.94
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.94
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.94
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.94
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.93
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.93
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.93
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.93
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.93
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.93
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.93
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.92
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.92
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.92
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.92
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.92
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.92
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.92
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.92
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.92
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.91
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.91
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.91
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.91
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.91
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.91
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.91
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.91
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.91
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.91
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.9
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.9
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.9
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.9
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.9
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.9
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.9
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.9
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.9
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.9
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.9
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.9
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.9
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.9
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.9
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.89
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.89
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.89
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.89
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.89
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.89
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.89
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.89
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.89
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.89
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.89
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.89
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.88
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.88
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.88
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.88
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.88
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.88
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.88
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.88
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.88
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.88
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.88
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.88
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.88
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.88
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.87
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.87
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.87
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.87
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.87
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.87
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.87
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.87
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.87
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.87
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.86
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.86
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.86
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.86
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.86
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.86
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.86
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.86
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.86
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.85
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.85
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.85
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.85
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.85
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.85
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.85
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.85
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.85
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.85
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.85
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.85
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.85
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.84
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.84
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.84
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.84
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.84
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.83
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.83
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.83
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.83
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.83
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.83
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.83
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.83
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.83
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.82
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.82
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.82
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.81
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.81
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.81
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.81
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.81
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.81
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.81
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.8
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.8
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.8
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.8
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.8
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.8
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.8
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.8
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.8
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.8
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.79
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.79
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.79
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.79
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.79
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.79
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.79
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.78
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.78
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.78
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.78
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.78
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.77
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.77
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.76
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.76
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.75
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.75
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.75
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.75
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.75
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.75
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.75
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.74
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.74
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.74
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.74
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.74
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.73
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.73
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.73
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.73
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.73
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.73
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.73
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.72
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.72
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.72
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.72
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.72
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.72
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.71
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.71
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.71
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.71
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.7
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.7
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.7
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.7
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.7
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.7
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.7
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.7
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.7
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.7
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.69
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.69
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.69
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.69
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.69
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.69
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.68
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.68
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.68
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.68
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.68
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.68
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.68
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.68
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.67
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.67
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.67
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.67
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.67
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.67
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.67
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.67
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.67
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.67
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.66
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.66
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.66
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.66
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.66
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.66
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.66
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.65
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.65
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.65
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.65
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.65
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.65
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.65
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.64
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.64
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.64
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.64
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.63
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.63
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.63
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.63
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.62
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.62
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.62
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.62
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.62
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.62
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.62
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.62
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.61
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.61
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.61
2ens_A	96	Advanced glycosylation END product-specific recept	99.61
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.61
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.61
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.61
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.61
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.61
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.6
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.6
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.6
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.6
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.6
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.6
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.6
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.59
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.59
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.59
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.59
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.59
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.58
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.58
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.57
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.57
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.57
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.57
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.57
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.57
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.57
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.57
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.57
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.56
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.56
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.56
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.56
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.56
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.56
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.56
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.56
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.56
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.56
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.55
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.55
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.55
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.55
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.55
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.55
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.55
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.55
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.54
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.54
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.54
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.54
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.54
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.54
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.53
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.53
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.53
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.53
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.53
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.53
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.53
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.53
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.53
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.52
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.52
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.52
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.52
1he7_A	126	High affinity nerve growth factor receptor; transf	99.52
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.52
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.52
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.52
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.51
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.51
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.51
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.5
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.5
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.5
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.5
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.5
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.5
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.5
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.49
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.49
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.49
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.49
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.49
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.48
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.48
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.48
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.22
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.48
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.48
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.48
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.47
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.47
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.47
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.47
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.47
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.46
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.46
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.46
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.46
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.45
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.45
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.45
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.45
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.45
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.45
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.44
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.44
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.44
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.44
1he7_A	126	High affinity nerve growth factor receptor; transf	99.44
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.44
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.44
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.43
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.43
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.43
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.43
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.43
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.43
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.43
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.42
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.42
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.42
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.42
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.41
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.41
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.41
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.41
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.41
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.4
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.4
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.4
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.4
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.39

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=2.4e-35  Score=222.87  Aligned_cols=230  Identities=23%  Similarity=0.384  Sum_probs=187.8

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+....   .+.+.             .....++|.|.+
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~---~~~~~-------------~~~~~~~L~i~~   67 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG---NYKMT-------------LVENTATLTVLK   67 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSS---SEEEE-------------EETTEEEEEESS
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCC---cEEEE-------------EcCCEEEEEEec
Confidence            47899999999999999999999999988888999999998876541   11111             011245799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR  158 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~  158 (258)
                      + +..|+|.|+|.+.+..+... ..+.|.|..+|.+..  .....+..|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        68 v-~~~d~G~Y~C~~~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~  145 (284)
T 2rik_A           68 V-TKGDAGQYTCYASNVAGKDS-CSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK  145 (284)
T ss_dssp             C-CGGGCEEEEEEEEETTEEEE-EEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSS
T ss_pred             C-CcccCEEEEEEEEECCceEE-EEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCc
Confidence            9 99999999999999887665 788899988775443  3344678999999999999999999999999988776554


Q ss_pred             eEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCc
Q psy14532        159 QKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL  235 (258)
Q Consensus       159 ~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  235 (258)
                      ....   ....|.|.++.. +|+|.|+|.+.|..+ ..+..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+
T Consensus       146 ~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~  222 (284)
T 2rik_A          146 FRMSFVESVAVLEMYNLSV-EDSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL-QGTPPF  222 (284)
T ss_dssp             EEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSC-EEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEEC-BSSSCC
T ss_pred             EEEEEcCCEEEEEECCCCc-ccCEEEEEEEEcCCC-ceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEE-EecCCC
Confidence            4332   234689999997 999999999999887 4567788999999988777777778999999999999 688999


Q ss_pred             eeEEEECCEecccccc
Q psy14532        236 TISWLKNGLPILSAMG  251 (258)
Q Consensus       236 ~~~W~~~g~~l~~~~~  251 (258)
                      .+.|+++|..+..+..
T Consensus       223 ~v~W~~~~~~~~~~~~  238 (284)
T 2rik_A          223 QVSWHKDKRELRSGKK  238 (284)
T ss_dssp             EEEEEETTEEECBTTT
T ss_pred             EEEEEECCEECcCCCC
Confidence            9999999999987654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=220.40  Aligned_cols=228  Identities=24%  Similarity=0.433  Sum_probs=173.2

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeee---CCcEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP---NGTLL   77 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~   77 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+...    +....              ...   ..+|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~----~~~~~--------------~~~~~~~~~L~   66 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETI--------------EFDESAGAVLR   66 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT----TEEEE--------------EETTTTEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC----ceEEE--------------EecCCCceEEE
Confidence            3789999999999999999999999999888999999998876432    11100              001   14699


Q ss_pred             EeecccC-CCceEEEEEEEeCCcceeeceEEEEEecC-------Ceec-cCCCcceecCCcEEEEeeeCcccCceEEEEe
Q psy14532         78 IENVQKD-HDRGVYWCTATNKQGRSSSQNVHISVTGA-------PFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQK  148 (258)
Q Consensus        78 i~~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~  148 (258)
                      |.++ +. .|+|.|+|.+.+..+... ..+.|.|...       |.+. .+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        67 i~~~-~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k  144 (304)
T 2yd9_A           67 IQPL-RTPRDENVYECVAQNSVGEIT-VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK  144 (304)
T ss_dssp             ECSC-CTTTTCSEEEEEEECSSCEEC-CEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             Eecc-cccCCCeEEEEEEECCCCeEE-EEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEE
Confidence            9999 87 999999999999888755 7888888764       2222 2445567889999999999999999999999


Q ss_pred             CCcccCCCc---ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee---cCCccccCCCCCccCCCCee
Q psy14532        149 GVQQLPLNR---RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---VPPKIAPFEFQPDLHSGDRA  222 (258)
Q Consensus       149 ~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~  222 (258)
                      ++..+....   +.....++.|.|.++.. +|+|.|+|.+.|..+...+....|.|.   .+|.+...+....+..|+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v  223 (304)
T 2yd9_A          145 DFLPVDPSASNGRIKQLRSGALQIESSEE-TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV  223 (304)
T ss_dssp             TTEECCGGGGTTSEEECTTSCEEECSCCG-GGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCE
T ss_pred             CCEECcCCCCcceEEeCCCeEEEEccCCc-ccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeE
Confidence            998775432   33445677899999997 999999999999887544443555553   35555555656678899999


Q ss_pred             eEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        223 GVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       223 ~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      .|.|.+ .+.|.+.|.|+++|..+..+.
T Consensus       224 ~l~C~~-~g~p~p~v~W~~~~~~l~~~~  250 (304)
T 2yd9_A          224 NITCVA-VGSPMPYVKWMQGAEDLTPED  250 (304)
T ss_dssp             EEEEEE-EEESCCEEEEEETTEECSCSS
T ss_pred             EEEEEE-eeeCCCEEEEEECCEECCCcc
Confidence            999999 688999999999999997654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=7.7e-34  Score=234.05  Aligned_cols=229  Identities=23%  Similarity=0.382  Sum_probs=186.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.+...+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+...   .++.+.             .....++|.|.++
T Consensus       197 pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~---~~~~~~-------------~~~~~~~L~i~~v  260 (570)
T 3b43_A          197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GNYKMT-------------LVENTATLTVLKV  260 (570)
T ss_dssp             CCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTT---SSEEEE-------------EETTEEEEEESSB
T ss_pred             CCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCC---CcEEEE-------------EECCEEEEEEccc
Confidence            566777777888999999999999999988999999999887544   111111             0012357999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                       +.+|+|.|+|.+.|..|... ..+.|.|..+|.+..  .....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+.
T Consensus       261 -~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~  338 (570)
T 3b43_A          261 -TKGDAGQYTCYASNVAGKDS-CSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF  338 (570)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSE
T ss_pred             -CcccCEEEEEEEECCCCcEE-EEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcE
Confidence             99999999999999988766 788888887775432  23345789999999999999999999999999888766554


Q ss_pred             EEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCce
Q psy14532        160 KVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT  236 (258)
Q Consensus       160 ~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  236 (258)
                      .+.   ..+.|.|.++.. +|+|.|+|.|.|..+. .+....|.|..+|.+...+....+.+|+.+.|.|.+ .+.|.+.
T Consensus       339 ~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~  415 (570)
T 3b43_A          339 RMSFVESVAVLEMYNLSV-EDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL-QGTPPFQ  415 (570)
T ss_dssp             EEEEETTEEEEEEESCCG-GGCEEEEEEEEBTTBC-CEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEE-ESSSSCC
T ss_pred             EEEEECCEEEEEECCCCc-ccCEEEEEEEEeCCCE-EEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEE-ecCCCCE
Confidence            432   234699999997 9999999999999884 556788999999988777777778899999999999 6899999


Q ss_pred             eEEEECCEecccccc
Q psy14532        237 ISWLKNGLPILSAMG  251 (258)
Q Consensus       237 ~~W~~~g~~l~~~~~  251 (258)
                      +.|+++|..+..+..
T Consensus       416 v~W~k~g~~l~~~~~  430 (570)
T 3b43_A          416 VSWHKDKRELRSGKK  430 (570)
T ss_dssp             CEEEETTEECCSSSS
T ss_pred             EEEEECCEECcCCCC
Confidence            999999999976653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=212.39  Aligned_cols=232  Identities=23%  Similarity=0.401  Sum_probs=178.6

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      .+|++...+.++.+.+|++++|.|.+.+.|. .+.|++ ++..+...   .++.+..             .....+|.|.
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~---~~~~~~~-------------~~~~~~L~i~   65 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIST---QRVVVQK-------------EGVRSRLTIY   65 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCB---TTEEEEE-------------ETTEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCC---CcEEEec-------------CCCEEEEEEc
Confidence            3788999999999999999999999998764 899999 56555432   1111110             0012479999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC--C
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--N  156 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~--~  156 (258)
                      ++ +..|+|.|+|.+.+..+...+..+.|.|..++.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .
T Consensus        66 ~~-~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~  144 (291)
T 2wim_A           66 NA-NIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD  144 (291)
T ss_dssp             SC-CGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCC
T ss_pred             cC-CcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCC
Confidence            99 99999999999999888765577888888776543 34556788999999999999999999999999877653  3


Q ss_pred             cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeecCCccccCCC--CCccCCCCeeeEEEEeccCCC
Q psy14532        157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEF--QPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      .+.....++.|.|.++.. +|.|.|+|.+.+..+. .....+.+.+..+|.+.....  ...+..|+.+.|.|.+ .+.|
T Consensus       145 ~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p  222 (291)
T 2wim_A          145 NRFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSP  222 (291)
T ss_dssp             SSEEECTTSCEEETTCCG-GGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC-CCBS
T ss_pred             ceEEEccCCCEEEEecch-hhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEe-ecCC
Confidence            455556778899999997 9999999999988642 234566778888887665433  3467889999999999 6889


Q ss_pred             CceeEEEECCEeccccccc
Q psy14532        234 PLTISWLKNGLPILSAMGV  252 (258)
Q Consensus       234 ~~~~~W~~~g~~l~~~~~~  252 (258)
                      .+.+.|+++|..+..+..+
T Consensus       223 ~p~v~W~~~g~~~~~~~~~  241 (291)
T 2wim_A          223 EPAISWFRNGKLIEENEKY  241 (291)
T ss_dssp             CCEEEEEETTEECCCTTTE
T ss_pred             CCeEEEEECCEECcCCccE
Confidence            9999999999999876543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.2e-33  Score=214.15  Aligned_cols=233  Identities=24%  Similarity=0.368  Sum_probs=180.8

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecC-CCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .||++...|.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+....  .++.+.            ......++|.|
T Consensus         1 r~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~--~~~~~~------------~~~~~~~~L~i   66 (291)
T 1qz1_A            1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ--QRISVV------------WNDDDSSTLTI   66 (291)
T ss_dssp             -CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSC--SSEEEE------------EEETTEEEEEE
T ss_pred             CCcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCC--ceEEEE------------EcCCCeEEEEE
Confidence            478999999999999999999999999875 68999999 676665331  111110            00012457999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC--
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--  155 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~--  155 (258)
                      .++ +.+|+|.|+|.+.+..+...+..+.|.|..++.+.. +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  
T Consensus        67 ~~~-~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~  145 (291)
T 1qz1_A           67 YNA-NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK  145 (291)
T ss_dssp             CSC-CGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTC
T ss_pred             ecC-CCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCC
Confidence            999 999999999999998866555788888887775443 4556788999999999999989899999999887653  


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCC-CCCccceEEEEeecCCccccCCC--CCccCCCCeeeEEEEeccCC
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ-GRSSSQNVHISVTVPPKIAPFEF--QPDLHSGDRAGVQCLVTKGD  232 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~  232 (258)
                      ..+.....++.|.|.++.. +|+|.|+|.+.+.. +......+.|.|..+|.+.....  ...+..|+.+.|.|.+ .+.
T Consensus       146 ~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~  223 (291)
T 1qz1_A          146 DVRFIVLSNNYLQIRGIKK-TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA-DGF  223 (291)
T ss_dssp             CTTEEECTTSCEEETTCCG-GGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE-EEE
T ss_pred             CceEEEccCCcEEEccCcc-ccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE-EEe
Confidence            2344455677899999997 99999999999875 32334567777777776654332  3467889999999999 588


Q ss_pred             CCceeEEEECCEeccccc
Q psy14532        233 PPLTISWLKNGLPILSAM  250 (258)
Q Consensus       233 p~~~~~W~~~g~~l~~~~  250 (258)
                      |.+.+.|+++|..+..+.
T Consensus       224 p~p~i~W~~~g~~~~~~~  241 (291)
T 1qz1_A          224 PEPTMSWTKDGEPIENEE  241 (291)
T ss_dssp             SCCEEEEEETTEECCCC-
T ss_pred             CCCcEEEEECCEECcCCC
Confidence            999999999999997764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=6.9e-33  Score=228.36  Aligned_cols=225  Identities=24%  Similarity=0.443  Sum_probs=180.9

Q ss_pred             CCcceeece-eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFI-QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|+|++..+....   .+.+.             .....+.|.|.+
T Consensus       290 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~---~~~~~-------------~~~~~~~L~i~~  353 (570)
T 3b43_A          290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---KFRMS-------------FVESVAVLEMYN  353 (570)
T ss_dssp             CCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSS---SEEEE-------------EETTEEEEEEES
T ss_pred             CCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCC---cEEEE-------------EECCEEEEEECC
Confidence            566654433 3457899999999999999999999999998876541   11111             011234699999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      + +.+|+|.|+|.+.|..|... ..+.|.|..+|.+.. +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++
T Consensus       354 v-~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~  431 (570)
T 3b43_A          354 L-SVEDSGDYTCEAHNAAGSAS-SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY  431 (570)
T ss_dssp             C-CGGGCEEEEEEEEBTTBCCE-EEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSE
T ss_pred             C-CcccCEEEEEEEEeCCCEEE-EEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCE
Confidence            9 99999999999999998776 778899988876554 44566788999999999999999999999999988776665


Q ss_pred             EEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCce
Q psy14532        160 KVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT  236 (258)
Q Consensus       160 ~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  236 (258)
                      .+...   ..|.|.++.. +|+|.|+|.|.|..|. ......|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.
T Consensus       432 ~~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~-~g~p~~~  508 (570)
T 3b43_A          432 KIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI-EGAEPIS  508 (570)
T ss_dssp             EEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCE-EEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEE-ESCSSCC
T ss_pred             EEEEcCCEEEEEECCCCh-hhCEEEEEEEEECCCe-EEEEEEEEeccCCcccccCCCceecCCCeEEEEEEE-ecCCCCE
Confidence            55433   3688999997 9999999999999884 446678888889988777777788899999999999 6899999


Q ss_pred             eEEEECCEecc
Q psy14532        237 ISWLKNGLPIL  247 (258)
Q Consensus       237 ~~W~~~g~~l~  247 (258)
                      +.|+++|..+.
T Consensus       509 v~W~k~~~~~~  519 (570)
T 3b43_A          509 VAWFKDKGEIV  519 (570)
T ss_dssp             CEEEETTEECC
T ss_pred             EEEEeCCeEec
Confidence            99999986553

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=4.5e-33  Score=220.34  Aligned_cols=231  Identities=29%  Similarity=0.494  Sum_probs=184.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.+...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.......+                .....+++|.|.++
T Consensus       121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----------------~~~~~~~~L~i~~~  184 (403)
T 3laf_A          121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR----------------VVVLPSGALQISRL  184 (403)
T ss_dssp             CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCS----------------EEECTTSCEEECSC
T ss_pred             CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceE----------------EEEcCCceEEEccc
Confidence            45666677778899999999999999888889999999877643211111                12234678999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCee-------ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV-------RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       +.+|+|.|+|.+.+..+......+.+.|...+..       ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       185 -~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  263 (403)
T 3laf_A          185 -QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ  263 (403)
T ss_dssp             -CGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC
T ss_pred             -ccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeecc
Confidence             9999999999999987765546677787765422       22445667899999999999999999999999988776


Q ss_pred             CC-cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        155 LN-RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       155 ~~-~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      .. .......++.|.|.++.. +|+|.|+|.+.|..+ ..+..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|
T Consensus       264 ~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p  340 (403)
T 3laf_A          264 LRSKKYSLLGGSNLLISNVTD-DDSGTYTCVVTYKNE-NISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAV-SGKP  340 (403)
T ss_dssp             CSSSSEEEETTTEEEECSCCG-GGCEEEEEEEEETTE-EEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEE-EEES
T ss_pred             CCCceEEECCccEEEEeCCCH-HHCEEEEEEEEcCCC-ceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEE-eecc
Confidence            43 344455677899999997 999999999999876 4567788888888887777767778899999999999 6888


Q ss_pred             CceeEEEECCEeccccccc
Q psy14532        234 PLTISWLKNGLPILSAMGV  252 (258)
Q Consensus       234 ~~~~~W~~~g~~l~~~~~~  252 (258)
                      .+.|.|+++|..+..+...
T Consensus       341 ~p~v~W~~~g~~~~~~~~~  359 (403)
T 3laf_A          341 VPTVNWMKNGDVVIPSDYF  359 (403)
T ss_dssp             CCEEEEEETTEECCCSSSE
T ss_pred             CCEEEEEECCEECCCCCcE
Confidence            8999999999998766543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.4e-31  Score=210.46  Aligned_cols=229  Identities=28%  Similarity=0.485  Sum_probs=166.3

Q ss_pred             CCcceeeceeeee---cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTL---QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.|...|.+..+   .+|+++.|.|.+.|.|.+.+.|+|+|..+..... .++                 ...+++|.|
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~-----------------~~~~g~l~i   66 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD-FRY-----------------SVVDGSLLI   66 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC-----CE-----------------EEETTEEEE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCC-ccE-----------------EEECCEEEE
Confidence            5788888888776   6899999999999999999999999998764311 111                 123567887


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecC--------------------------Ce-----------------
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA--------------------------PF-----------------  115 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--------------------------~~-----------------  115 (258)
                      .+..+..|+|.|+|.+.|..|...+....|.+...                          +.                 
T Consensus        67 ~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~  146 (384)
T 3kld_A           67 NNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ  146 (384)
T ss_dssp             ESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCC
T ss_pred             cCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEe
Confidence            77536789999999999876653222222222100                          00                 


Q ss_pred             -----e---------------------------------------------------------ccCCCcceecCCcEEEE
Q psy14532        116 -----V---------------------------------------------------------RPMGNVSAIAGEPLYLG  133 (258)
Q Consensus       116 -----~---------------------------------------------------------~~~~~~~~~~g~~~~l~  133 (258)
                           .                                                         ..+....+.+|+.+.|.
T Consensus       147 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~  226 (384)
T 3kld_A          147 DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE  226 (384)
T ss_dssp             SSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEE
T ss_pred             eccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEE
Confidence                 0                                                         00011234568999999


Q ss_pred             eeeCcccCceEEEEeCC-cccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCC
Q psy14532        134 CPVAGYPIESITWQKGV-QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEF  212 (258)
Q Consensus       134 C~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~  212 (258)
                      |.+.|.|.+.+.|++++ ..+... ......++.|.|.++.. +|+|.|+|.|.|..+. ......|.|..+|.+...+.
T Consensus       227 C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~~~~~~  303 (384)
T 3kld_A          227 CFALGNPVPTILWRRADGKPIARK-ARRHKSNGILEIPNFQQ-EDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIIN  303 (384)
T ss_dssp             EEEEEESCCEEEEEETTCCCCCTT-CEECTTSCEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCC
T ss_pred             EEEeecCCCcEEEEeCCCcccccc-ceecCCCcEEEECCCCh-hhCEEEEEEEEcCCCe-EEEEEEEEEecCCccccCCC
Confidence            99999999999999954 444332 22233567899999998 9999999999999874 44567788888887766666


Q ss_pred             CCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccccc
Q psy14532        213 QPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV  252 (258)
Q Consensus       213 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~~  252 (258)
                      ...+..|+.+.|.|.+ .|.|.+.|.|+++|+.+..+...
T Consensus       304 ~~~v~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~  342 (384)
T 3kld_A          304 DIHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLLTRDRI  342 (384)
T ss_dssp             CEEECTTCCEEEECEE-EEESCCEEEEEETTEECCCBTTE
T ss_pred             ceEecCCCCEEEEeEC-CccCCCeEEEEECCEECCCCccE
Confidence            7778999999999999 68999999999999999765543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.98  E-value=5.4e-31  Score=199.61  Aligned_cols=210  Identities=18%  Similarity=0.262  Sum_probs=167.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|++++|.|.+.+    .+.|++++..+..                       .....++|.|.++
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~~-----------------------~~~~~~~L~i~~~   64 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEM-----------------------VENKKNEWIQEKA   64 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSCE-----------------------EEECSSEEEETTC
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcceee-----------------------ecCCCceEEEecc
Confidence            688887888899999999999999876    8999998865510                       0112368999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCcccC-ceEEEE-eCCcccCCCcc
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAGYPI-ESITWQ-KGVQQLPLNRR  158 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~-~~~~~~~~~~~  158 (258)
                       +..|+|.|+|.+.+  +.  ...+.|.|..++.. .......+.+|+.+.|.|.+.+ |. +.+.|+ +++..+....+
T Consensus        65 -~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~  138 (290)
T 2o26_X           65 -EATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT  138 (290)
T ss_dssp             -CGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE
T ss_pred             -CHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc
Confidence             99999999999998  33  36778888766533 3345567889999999999986 77 899995 67887776666


Q ss_pred             eEEecCCeEEEEecccCCCCc-EEEEEEEeCCCCCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        159 QKVFPNGTLLIENVQKDHDRG-VYWCTATNKQGRSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       159 ~~~~~~~~l~i~~~~~~~~~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      +....++.|.|.++.. +|.| .|+|.+.|..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+. +.|
T Consensus       139 ~~~~~~~~L~i~~v~~-~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~-g~p  216 (290)
T 2o26_X          139 FVPNPKAGITIKNVKR-AYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK-DVS  216 (290)
T ss_dssp             EEEETTTEEEEESCCG-GGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEE-ESS
T ss_pred             eeeCCCCCEEEecccH-HHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEe-cCC
Confidence            6677778999999997 9999 99999999865444556777776    567666666666889999999999994 888


Q ss_pred             Cce-eEEEECCEec
Q psy14532        234 PLT-ISWLKNGLPI  246 (258)
Q Consensus       234 ~~~-~~W~~~g~~l  246 (258)
                      .+. +.|+++|..+
T Consensus       217 ~p~~i~W~~~~~~~  230 (290)
T 2o26_X          217 TSVNSMWLKMNPQP  230 (290)
T ss_dssp             TTCEEEEEEESSSE
T ss_pred             cceeEEEecCCCCC
Confidence            875 9999998873

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.98  E-value=3.7e-30  Score=203.61  Aligned_cols=229  Identities=30%  Similarity=0.508  Sum_probs=176.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ..+..+|.++.+.+|++++|.|.+.+ .+.+.+.|+|+|..+..... .                +.....+++|.|.++
T Consensus        22 ~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~-~----------------~~~~~~~~~l~i~~~   84 (403)
T 3laf_A           22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMD-D----------------RKQQLPNGSLLIQNI   84 (403)
T ss_dssp             SEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSC-T----------------TEEECTTSCEEECSC
T ss_pred             EEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCc-c----------------cEEEecCCcEEEeee
Confidence            45677889999999999999999987 57778999999988764311 1                112234667777665


Q ss_pred             c----cCCCceEEEEEEEeCC-cceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC-
Q psy14532         82 Q----KDHDRGVYWCTATNKQ-GRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-  154 (258)
Q Consensus        82 ~----~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~-  154 (258)
                      .    +.+|+|.|+|.+.+.. +...+..+.|.|..++.+. ......+.+|+.+.|.|.+.+.|.+.+.|++++..+. 
T Consensus        85 ~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~  164 (403)
T 3laf_A           85 LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNP  164 (403)
T ss_dssp             CCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCC
T ss_pred             eccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccc
Confidence            1    4569999999999654 3333467788887766544 3556778899999999999888989999999988763 


Q ss_pred             --CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcccc------CCCCCccCCCCeeeEEE
Q psy14532        155 --LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP------FEFQPDLHSGDRAGVQC  226 (258)
Q Consensus       155 --~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~------~~~~~~~~~g~~~~l~C  226 (258)
                        ...+.....++.|.|.++.. +|+|.|+|.+.+..+...+..+.+.+...|....      .+....+.+|+.+.|.|
T Consensus       165 ~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C  243 (403)
T 3laf_A          165 IPGDSRVVVLPSGALQISRLQP-GDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC  243 (403)
T ss_dssp             CTTCCSEEECTTSCEEECSCCG-GGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECC
T ss_pred             cCCceEEEEcCCceEEEccccc-ccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEE
Confidence              33445556678899999997 9999999999998776566677888877765432      23345677899999999


Q ss_pred             EeccCCCCceeEEEECCEeccccc
Q psy14532        227 LVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       227 ~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      .+ .+.|.+.+.|+++|..+....
T Consensus       244 ~~-~~~p~~~~~W~~~~~~~~~~~  266 (403)
T 3laf_A          244 CV-SGYPPPSFTWLRGEEVIQLRS  266 (403)
T ss_dssp             EE-EEESCCEEEEEETTEECCCSS
T ss_pred             Ec-CCCCCCeEEEEECCeeccCCC
Confidence            99 588888999999999887544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=5.9e-32  Score=207.27  Aligned_cols=226  Identities=20%  Similarity=0.313  Sum_probs=162.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|.. +.+..+.+|++++|.|.+.+. |.+.+.|+|++..+...   .++.+.               ..+.+|.|.+
T Consensus         7 ~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~---~~~~~~---------------~~~~~L~i~~   67 (317)
T 2y25_A            7 GPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFK---------------DGICTLLITE   67 (317)
T ss_dssp             CCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCS---CC--------------------CCEEEEETT
T ss_pred             CCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCC---CcEEEE---------------CCeEEEEEcc
Confidence            677774 456899999999999999886 77899999999877643   111111               2245899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCc----------ccCceEEEEeC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAG----------YPIESITWQKG  149 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~----------~~~~~i~W~~~  149 (258)
                      + +.+|+|.|+|.+.+..+... ..+.|.|...+.+ .......+..|+.+.|.|.+.+          .|.+.+.|+++
T Consensus        68 ~-~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~  145 (317)
T 2y25_A           68 F-SKKDAGIYEVILKDDRGKDK-SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN  145 (317)
T ss_dssp             C-CSTTCSCEEEEEESSSCEEE-EEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEES
T ss_pred             C-CcccCeEEEEEEECCCCcEE-EEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEEC
Confidence            9 99999999999999887654 4444444432211 1122334556777777777766          67889999999


Q ss_pred             CcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec--------------------CCc
Q psy14532        150 VQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV--------------------PPK  206 (258)
Q Consensus       150 ~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~--------------------~p~  206 (258)
                      +..+....+......+   .|.|.++.. +|.|.|+|.+.|..+. ....+.|.+..                    .|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~  223 (317)
T 2y25_A          146 GSAIRYSDRVKTGVTGEQIWLQINEPTP-NDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR  223 (317)
T ss_dssp             SSBCCCCSSEEEEECSSEEEEEEESCCG-GGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCE
T ss_pred             CEECCCCCCeEEeccCCEEEEEECcCCc-ccCeeEEEEEEeCCce-EEEEEEEeeeeccccchhhcccCCcccCcCCCCc
Confidence            9988766655554433   499999997 9999999999997763 33445554321                    111


Q ss_pred             c-ccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        207 I-APFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       207 ~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      + ...+....+..|+.+.|.|.+ .+.|.+.+.|+++|+.+..+..
T Consensus       224 ~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~  268 (317)
T 2y25_A          224 VLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALASDDH  268 (317)
T ss_dssp             EEEBCCSEEEEETTSBBCEEEEE-ECSSCCEEEEEESSSEECCCSS
T ss_pred             ccccCCccEEEEcCCEEEEEEEE-ecCCCCEEEEEECCEeCCCCCc
Confidence            1 112334568899999999999 6899999999999999976654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=5.2e-30  Score=219.55  Aligned_cols=236  Identities=41%  Similarity=0.774  Sum_probs=188.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+...   .++......    ...    ......|.|.++
T Consensus       429 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~---~~~~~~~~~----~~~----~~~~~~L~i~~v  497 (816)
T 3dmk_A          429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN---DRYQVGQYV----TVN----GDVVSYLNITSV  497 (816)
T ss_dssp             CCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSC---TTEEEEEEE----CTT----SCEEEEEEESSC
T ss_pred             CCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC---CCcccccEE----ecC----CCcEEEEEEeec
Confidence            677777777788999999999999999999999999999887654   121111000    000    001235899999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV  161 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~  161 (258)
                       ...|+|.|+|.+.|..+... ..+.|.|..+|.+.......+..|+.+.|.|.+.+.|.+.+.|++++..+....+...
T Consensus       498 -~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~  575 (816)
T 3dmk_A          498 -HANDGGLYKCIAKSKVGVAE-HSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV  575 (816)
T ss_dssp             -CTTTCEEEEEEEEETTEEEE-EEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEE
T ss_pred             -cccCCEEEEEEEEECCCeEE-EEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEE
Confidence             99999999999999988766 7889999988887777777889999999999999988889999999998887777777


Q ss_pred             ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccC-CCCCccCCCCeeeEEEEeccCCCCceeEEE
Q psy14532        162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPLTISWL  240 (258)
Q Consensus       162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  240 (258)
                      ..+++|.|.++...+|+|.|+|.+.|..+...+..+.+.+..+|.+... .....+..|+.++|.|.+..+.+++.|.|+
T Consensus       576 ~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~  655 (816)
T 3dmk_A          576 FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT  655 (816)
T ss_dssp             CTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEE
T ss_pred             ecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEE
Confidence            7889999999973379999999999998865666778888887765543 334567889999999999655666799999


Q ss_pred             ECCEeccccc
Q psy14532        241 KNGLPILSAM  250 (258)
Q Consensus       241 ~~g~~l~~~~  250 (258)
                      ++|+.+....
T Consensus       656 ~~g~~l~~~~  665 (816)
T 3dmk_A          656 LDGQAISEDL  665 (816)
T ss_dssp             ETTBCCCGGG
T ss_pred             ECCeEcCCCC
Confidence            9999986554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=9.3e-31  Score=198.13  Aligned_cols=220  Identities=19%  Similarity=0.298  Sum_probs=167.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.+..+.+|++++|.|.+.+    .+.|++++......      .               .....++|.|.++
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~------~---------------~~~~~~~L~i~~~   58 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTL------D---------------PESPGSTLTTRNA   58 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEE------C---------------CCSSCCEEEESSC
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEE------e---------------ccCCccEEEEeee
Confidence            566777778889999999999999876    49999765321100      0               0112467999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe--eccCCCcceecCCcEEEEeeeCcccCce-EEEEe-CCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF--VRPMGNVSAIAGEPLYLGCPVAGYPIES-ITWQK-GVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~-~~~~~~~~~  157 (258)
                       +..|+|.|+|.+.+..+... ..+.|.|..++.  ........+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....
T Consensus        59 -~~~d~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~  136 (289)
T 3ejj_X           59 -TFKNTGTYRCTELEDPMAGS-TTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT  136 (289)
T ss_dssp             -CGGGCEEEEEECCC-----C-EEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTC
T ss_pred             -ccccCEEEEEEEeccCCcce-eEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCc
Confidence             99999999999998777655 778888886653  3335567788999999999998876654 99987 666666666


Q ss_pred             ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       158 ~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      +.....++.|.|.++.. +|.|.|+|.+.+......+..+.|.|.    .+|.+...+....+..|+.+.|.|.+..+.|
T Consensus       137 ~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p  215 (289)
T 3ejj_X          137 VYFFSPWRGFIIRKAKV-LDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV  215 (289)
T ss_dssp             CEEEETTTEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSS
T ss_pred             cEEECCCCCEEEeeccc-ccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCC
Confidence            67777788999999997 999999999995443345677888887    4666665566666788999999999964489


Q ss_pred             CceeEEEECCEecccc
Q psy14532        234 PLTISWLKNGLPILSA  249 (258)
Q Consensus       234 ~~~~~W~~~g~~l~~~  249 (258)
                      .+.+.|+++|..+...
T Consensus       216 ~~~i~W~~~~~~~~~~  231 (289)
T 3ejj_X          216 GFNVILKRGDTKLEIP  231 (289)
T ss_dssp             CCEEEEEETTEECCCC
T ss_pred             ceEEEEEECCEEeecc
Confidence            9999999999988764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=3.8e-30  Score=192.05  Aligned_cols=209  Identities=16%  Similarity=0.242  Sum_probs=165.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...+.+..+.+|++++|.|.+.+.+.+ .+.|++++..+...                          +.+|.|.+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------------------------~~~l~i~~   54 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------------------------TPSYRITS   54 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------------------------SSEEEESS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------------------------CCeEEEec
Confidence            5889899999999999999999999888777 99999999877543                          45799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      + +.+|+|.|+|.+.+..+.   ..+.|.|..++....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...   
T Consensus        55 ~-~~~d~G~Y~C~~~~~~~s---~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~---  127 (262)
T 3rjd_A           55 A-SVNDSGEYRCQRGLSGRS---DPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF---  127 (262)
T ss_dssp             C-CGGGCEEEEEEESSSCCC---CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE---
T ss_pred             C-CcccCeEEEEEEecCCcc---ccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc---
Confidence            9 999999999999875432   456778877765555556678899999999999 66788899999998876422   


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCC-c
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-L  235 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~  235 (258)
                        .....|.|.++.. +|.|.|+|.+.+..+ ..+..+.|.|..   +|.+...+ ...+..|+.+.|.|.+ .+.|. +
T Consensus       128 --~~~~~l~i~~~~~-~d~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~-~~~p~~p  201 (262)
T 3rjd_A          128 --HWNSNLTILKTNI-SHNGTYHCSGMGKHR-YTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCET-KLLLQRP  201 (262)
T ss_dssp             --EECCCEEESSCCG-GGCEEEEEEEESSSE-EEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEEC-CCCCC--
T ss_pred             --CCCCeEEEEECCh-hhCEEEEEEEeCCCC-ccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEc-ccCCCCC
Confidence              2357899999997 999999999999874 455667777775   33333333 5568889999999999 56654 3


Q ss_pred             ----eeEEEECCEecccc
Q psy14532        236 ----TISWLKNGLPILSA  249 (258)
Q Consensus       236 ----~~~W~~~g~~l~~~  249 (258)
                          .+.|+++|..+...
T Consensus       202 ~~~~~~~w~~~~~~~~~~  219 (262)
T 3rjd_A          202 GLQLYFSFYMGSKTLRGR  219 (262)
T ss_dssp             ---EEEEEEETTEEEEEE
T ss_pred             CccEEEEEEeCCcEeccc
Confidence                47899999988753

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=8.4e-30  Score=212.92  Aligned_cols=241  Identities=21%  Similarity=0.302  Sum_probs=178.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccc-eeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEA-RVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +...+.++.+.+|++++|.|...+.+...+.|+|+... ........+..... ......+..|..+..+++|.|.++ +
T Consensus         2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~-~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v-~   79 (642)
T 1e07_A            2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERV-DGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI-I   79 (642)
T ss_pred             ceEeccCCcccccccEEEEEccCCCCceEEEEECCccc-CCcceEEEEEccccccccCccccCceeeccCCcEEECCC-C
Confidence            56678889999999999999976666678999995422 21111111111110 112233445666667889999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecC---CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                      .+|+|.|+|.+.+.........+.|.|...   |.+.......+..|+.+.|.|.+.+ |.+.+.|++++..+....+..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~  158 (642)
T 1e07_A           80 QNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQ  158 (642)
T ss_pred             cccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceE
Confidence            999999999999865433336667777653   3443344456788999999999988 889999999998887666655


Q ss_pred             Eec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc-ccCCCCCccCCCCeeeEEEEeccCCCCceeE
Q psy14532        161 VFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTKGDPPLTIS  238 (258)
Q Consensus       161 ~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~  238 (258)
                      +.. .+.|.|.++.. +|.|.|+|.+.|..+...+..+.|.|..+|.. ...+....+.+|+.+.|.|.+ .+.|.+.+.
T Consensus       159 ~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~-~g~p~~~i~  236 (642)
T 1e07_A          159 LSNGNRTLTLFNVTR-NDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA-ASNPPAQYS  236 (642)
T ss_pred             EcCCCCEEEEeCCCc-ccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEc-CCCCCcEEE
Confidence            533 56899999997 99999999999988765667788888865543 334555678899999999999 799999999


Q ss_pred             EEECCEeccccc
Q psy14532        239 WLKNGLPILSAM  250 (258)
Q Consensus       239 W~~~g~~l~~~~  250 (258)
                      |+++|+.+....
T Consensus       237 W~~~g~~i~~~~  248 (642)
T 1e07_A          237 WFVNGTFQQSTQ  248 (642)
T ss_pred             EEECCeEcccCC
Confidence            999999986543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=206.42  Aligned_cols=227  Identities=19%  Similarity=0.258  Sum_probs=173.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEe-------ecCCCeEEEeeCCEeCcCCcc-ccceecccceeeccccccceeeeeC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-------GNPTPHISWKLDGYPLAGDRH-ENKNRIGEARVQQLPLNRRQKVFPN   73 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   73 (258)
                      .|.+...+.++.+.+|++++|.|.+.       +.|.+.+.|+|++..+..... ..+                 ....+
T Consensus        18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~-----------------~~~~~   80 (339)
T 3o4o_C           18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETR-----------------MWAQD   80 (339)
T ss_dssp             CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSC-----------------EEEET
T ss_pred             hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcccccc-----------------EEeeC
Confidence            57788889999999999999999997       778889999999876432211 111                 12346


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec---cCCCcceecCCcEEEEee-----eCcccCceEE
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR---PMGNVSAIAGEPLYLGCP-----VAGYPIESIT  145 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~---~~~~~~~~~g~~~~l~C~-----~~~~~~~~i~  145 (258)
                      ++|.|.++ +..|+|.|+|.+.+..+... ..+.|.|...+...   ......+..|+.+.|.|.     +.+.|.+.+.
T Consensus        81 ~~L~i~~v-~~~D~G~Y~C~~~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~  158 (339)
T 3o4o_C           81 GALWLLPA-LQEDSGTYVCTTRNASYCDK-MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQ  158 (339)
T ss_dssp             TEEEESSB-CTTCCEEEECCEEETTEEEE-EEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBC
T ss_pred             CeEEECCC-CcccCEEEEEEEECCcceEE-EEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEE
Confidence            78999999 99999999999999887555 77888888765432   123346789999999999     7788889999


Q ss_pred             EEeCCcccCCC-cceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCC---CccceEEEEeec-----CCccccCCCCCc
Q psy14532        146 WQKGVQQLPLN-RRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTV-----PPKIAPFEFQPD  215 (258)
Q Consensus       146 W~~~~~~~~~~-~~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~~  215 (258)
                      |++++..+... .++....+ +.|.|.++.. +|.|.|+|.+.|..+.   ..+..+.|.|..     +|.+...+....
T Consensus       159 W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~  237 (339)
T 3o4o_C          159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVAL-EDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS  237 (339)
T ss_dssp             CEESSCBCCTTCSSEEECTTSSEEEESSCCG-GGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCC
T ss_pred             EecCCeeCCCCCceeEEcCCcceEEEcccCH-hhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeE
Confidence            99999887655 33433333 4799999997 9999999999997753   234566777764     334444455567


Q ss_pred             cCCCCeeeEEEEec--cCCC-CceeEEEECCEeccc
Q psy14532        216 LHSGDRAGVQCLVT--KGDP-PLTISWLKNGLPILS  248 (258)
Q Consensus       216 ~~~g~~~~l~C~~~--~~~p-~~~~~W~~~g~~l~~  248 (258)
                      +..|+.+.|.|.+.  .+.| .+.+.|+++|..+..
T Consensus       238 v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~  273 (339)
T 3o4o_C          238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES  273 (339)
T ss_dssp             CCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSS
T ss_pred             eccCCCEEEEEEEECCCCCCCCceEEEEECCeeccc
Confidence            88999999999993  3667 889999999987653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=8.9e-31  Score=207.84  Aligned_cols=220  Identities=13%  Similarity=0.158  Sum_probs=148.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      .++..+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.....   ....          .+    ...+|.|.++ +
T Consensus        50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~---~~~~----------~~----~~~sL~I~~v-~  111 (423)
T 3qs7_E           50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH---FDLQ----------NR----GVVSMVILKM-T  111 (423)
T ss_dssp             ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB---C-------------------CEEEEEESSC-C
T ss_pred             cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce---eccc----------cc----eEEEEEEeec-C
Confidence            455666689999999999999999999999999998876543210   0000          00    1136899999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc---ceE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR---RQK  160 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~---~~~  160 (258)
                      ..|+|.|+|.+.|..+... ..+.|.|..+|.+.+..+..+..|+.+.|.|.+.|.|.|.|+|++++.......   ...
T Consensus       112 ~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~  190 (423)
T 3qs7_E          112 ETQAGEYLLFIQSEATNYT-ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV  190 (423)
T ss_dssp             SSSCSEEEEEEEC--CEEE-EEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------C
T ss_pred             cccCEEEEEEEEcCCCcEE-EEEEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccccc
Confidence            9999999999999988766 778888886665433333345568888999999999999999999877542111   000


Q ss_pred             EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEE
Q psy14532        161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL  240 (258)
Q Consensus       161 ~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  240 (258)
                      +.....+    +. ..|+|.|+|.|.|..|......+.|.|..+|...  +....+.+|+.+.|.|.+.+..|.+.|.|+
T Consensus       191 ~~~~~~~----l~-~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~--~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~  263 (423)
T 3qs7_E          191 VKKEEKV----LH-ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWE  263 (423)
T ss_dssp             EEECCSE----EC-CCCSSCEEEEEECSSCEEEEECEEEESSSCCCSS--TTEEEEETTSCEEEEEEEEESSSCCCEEEE
T ss_pred             ccccceE----Ee-cccCeEEEEEEEcCCCCcceeeEEEEEecCCccC--CCceEEeCCCeEEEEEEEEcCCCCcEEEEE
Confidence            1111111    13 3899999999999988655555778887776653  235568889999999999544788999999


Q ss_pred             ECCEecccc
Q psy14532        241 KNGLPILSA  249 (258)
Q Consensus       241 ~~g~~l~~~  249 (258)
                      ++|..+...
T Consensus       264 k~g~~l~~~  272 (423)
T 3qs7_E          264 LENKALEEG  272 (423)
T ss_dssp             ESSSBCCGG
T ss_pred             ECCEEcccc
Confidence            999988664

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=1.6e-29  Score=211.17  Aligned_cols=214  Identities=24%  Similarity=0.395  Sum_probs=172.8

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..                           ...|.|.++ ...
T Consensus       385 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~---------------------------~~~L~i~~~-~~~  436 (642)
T 1e07_A          385 TISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH---------------------------TQELFISNI-TEK  436 (642)
T ss_pred             eecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC---------------------------CceEEEccC-Chh
Confidence            4455667889999999999999999999999999876642                           236899999 999


Q ss_pred             CceEEEEEEEeCCccee-eceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE
Q psy14532         86 DRGVYWCTATNKQGRSS-SQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV  161 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~  161 (258)
                      |+|.|+|.+.|..|... +..+.+.|..   +|.+.......+..|+.+.|.|.+.+ |.+.+.|++++..+....+..+
T Consensus       437 d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~  515 (642)
T 1e07_A          437 NSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQL  515 (642)
T ss_pred             hCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEE
Confidence            99999999999886543 2345666653   34444455566789999999999984 7889999999998877666655


Q ss_pred             ec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc-cccCCCCCccCCCCeeeEEEEeccCCCCceeEE
Q psy14532        162 FP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK-IAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW  239 (258)
Q Consensus       162 ~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W  239 (258)
                      .. ++.|.|.++.. +|.|.|+|.+.|..+...+..+.|.|..+|. +...+....+..|+.+.|.|.+ .+.|.+.|.|
T Consensus       516 ~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W  593 (642)
T 1e07_A          516 SNGNRTLTLFNVTR-NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS-ASNPSPQYSW  593 (642)
T ss_pred             cCCCcEEEEeecCh-hcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEe-ccCCCCeEEE
Confidence            43 45899999997 9999999999999886666678888887654 4444556778899999999999 6899999999


Q ss_pred             EECCEeccccc
Q psy14532        240 LKNGLPILSAM  250 (258)
Q Consensus       240 ~~~g~~l~~~~  250 (258)
                      +++|..+..+.
T Consensus       594 ~~~g~~i~~~~  604 (642)
T 1e07_A          594 RINGIPQQHTQ  604 (642)
T ss_pred             EECCEECccCc
Confidence            99999987654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=8.6e-30  Score=201.56  Aligned_cols=230  Identities=23%  Similarity=0.390  Sum_probs=170.2

Q ss_pred             CCccee-eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe-
Q psy14532          2 HPQLIY-KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE-   79 (258)
Q Consensus         2 ~p~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-   79 (258)
                      ||.|.. .+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+..... .+...               ...+++|.|. 
T Consensus        16 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~---------------~~~~~~l~i~~   79 (404)
T 3p3y_A           16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD-PRVSM---------------RRRSGTLVIDF   79 (404)
T ss_dssp             CCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGC-SSCBC---------------CSSSCCCBCCC
T ss_pred             CCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecC-CcceE---------------ecCCceEEEEe
Confidence            677764 46777899999999999999989999999999987754311 11111               1134556554 


Q ss_pred             ---ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc--CCCcceecCCcEEEEeee-CcccCceEEEEeCCc-c
Q psy14532         80 ---NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQ-Q  152 (258)
Q Consensus        80 ---~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~-~  152 (258)
                         ++ +.+|+|.|+|.+.+..+...+..+.|.|..++....  .....+.+|+.+.|.|.+ .+.|.+.+.|++++. .
T Consensus        80 ~~~~~-~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~  158 (404)
T 3p3y_A           80 RSGGR-PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP  158 (404)
T ss_dssp             TTTCC-TTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCB
T ss_pred             ccCCC-CccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccc
Confidence               77 889999999999998887655778888887764432  344678899999999998 778889999999874 3


Q ss_pred             cCCCcceEEecCCeEEEEecccCCC-CcEEEEEEEeCCCCCc--cceEEEEeecCC-------ccccCC---CCCccCCC
Q psy14532        153 LPLNRRQKVFPNGTLLIENVQKDHD-RGVYWCTATNKQGRSS--SQNVHISVTVPP-------KIAPFE---FQPDLHSG  219 (258)
Q Consensus       153 ~~~~~~~~~~~~~~l~i~~~~~~~~-~g~y~C~~~~~~~~~~--~~~~~l~v~~~p-------~~~~~~---~~~~~~~g  219 (258)
                      +....+.....++.|.|.++.. .| +|.|+|.+.+..+...  +..+.+.+...+       .+....   ....+..|
T Consensus       159 ~~~~~~~~~~~~~~l~i~~v~~-~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G  237 (404)
T 3p3y_A          159 ITQDKRVSQGHNGDLYFSNVML-QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG  237 (404)
T ss_dssp             CCCCSSEEECTTSCEEESSCCS-GGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETT
T ss_pred             cCCCCcEEEcCCCcEEEEeeee-ccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecC
Confidence            4445556666788999999997 77 6999999999876432  333455554322       221111   12357789


Q ss_pred             CeeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        220 DRAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       220 ~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      +.+.|.|.+ .+.|.+.+.|+++|..+....
T Consensus       238 ~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~  267 (404)
T 3p3y_A          238 MDLLLECIA-SGVPTPDIAWYKKGGDLPSDK  267 (404)
T ss_dssp             SCEEEECCB-CCSSCCEEEEEETTBCCCTTT
T ss_pred             CCEEEEEEE-CCCCCCcEEEEECCEECCCCc
Confidence            999999999 688999999999999887654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=5e-30  Score=197.54  Aligned_cols=235  Identities=18%  Similarity=0.269  Sum_probs=156.9

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCc------cccceecccceeeccccccceeeeeCCc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDR------HENKNRIGEARVQQLPLNRRQKVFPNGT   75 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (258)
                      ..|...+.++.+.+|++++|.|.+.+. |.+.+.|+|++.......      ...++....        ........+++
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~--------~~~~~~~~~~~   75 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS--------ESTKRENMDFS   75 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC-----------CTTCCBCC
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeec--------ccccccCceeE
Confidence            356677888999999999999999887 888999999875321100      000111000        00000023567


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcce----eeceEEEEEecCCee--ccCCCcceecCCcEEEEeeeCcccCc--eEEEE
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTGAPFV--RPMGNVSAIAGEPLYLGCPVAGYPIE--SITWQ  147 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~--~i~W~  147 (258)
                      |.|.++ +.+|+|.|+|.+.+..+..    .+..+.|.|...+..  ...+...+.+|+.+.|.|.+.+.|++  .+.|+
T Consensus        76 L~I~~v-~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~  154 (327)
T 2wng_A           76 ISISNI-TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWF  154 (327)
T ss_dssp             EEECSC-CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEccC-ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEE
Confidence            999999 9999999999999976531    224567777655421  11234567889999999999987765  89999


Q ss_pred             eCCcccCCCcceEEe--c------CCeEEEEecccCCCCcEEEEEEEeCCCCC--ccceEEE--EeecCCccccCCCCCc
Q psy14532        148 KGVQQLPLNRRQKVF--P------NGTLLIENVQKDHDRGVYWCTATNKQGRS--SSQNVHI--SVTVPPKIAPFEFQPD  215 (258)
Q Consensus       148 ~~~~~~~~~~~~~~~--~------~~~l~i~~~~~~~~~g~y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~  215 (258)
                      +++..+.........  .      ...|.|..... +|.|.|+|.+.|..+..  ......+  .+..+|.+...+..  
T Consensus       155 k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--  231 (327)
T 2wng_A          155 KNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTRE-DVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--  231 (327)
T ss_dssp             ETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTT-GGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--
T ss_pred             ECCEEccccccccccccCCCceEEEEEEEEechhc-CcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--
Confidence            999887654322111  1      12355555543 66799999999987642  2223333  34556665554433  


Q ss_pred             cCCCCeeeEEEEeccCCCCc-eeEEEECCEecccc
Q psy14532        216 LHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       216 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      +.+|+.+.|.|.+.+.+|++ .|.|++||+.+...
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  266 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTE  266 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEE
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCc
Confidence            77899999999995335554 89999999998754

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=6.3e-30  Score=201.79  Aligned_cols=228  Identities=25%  Similarity=0.365  Sum_probs=166.7

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      .||.|...+.++.+.+|++++|.|.+.+ .|.+.+.|+|+|..+.....  ...               ....+++|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~--~~~---------------~~~~~~~L~i~   67 (395)
T 1bih_A            5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH--NAA---------------LRKDEGSLVFL   67 (395)
T ss_dssp             CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT--TEE---------------ECTTSCCEEES
T ss_pred             CCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc--eEE---------------EecCCceEEEe
Confidence            4789988999999999999999999998 78889999999887765421  110               11236789999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec--CCeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCc---cc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG--APFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQ---QL  153 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~---~~  153 (258)
                      ++ +..|+|.|+|.+.+..+...+..+.|.+..  .+.+ .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   ..
T Consensus        68 ~~-~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~-~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~  145 (395)
T 1bih_A           68 RP-QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA-KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN  145 (395)
T ss_dssp             SC-CGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC-EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG
T ss_pred             cC-CCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc-CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc
Confidence            99 999999999999998776554445555542  2322 2234567799999999996 678899999999862   11


Q ss_pred             C----CCcceEEecCCeEEEEecccCCCCc---EEEEEEEeCCCCCccceEE--EEeecCCc--------cccCCCCCcc
Q psy14532        154 P----LNRRQKVFPNGTLLIENVQKDHDRG---VYWCTATNKQGRSSSQNVH--ISVTVPPK--------IAPFEFQPDL  216 (258)
Q Consensus       154 ~----~~~~~~~~~~~~l~i~~~~~~~~~g---~y~C~~~~~~~~~~~~~~~--l~v~~~p~--------~~~~~~~~~~  216 (258)
                      .    ...+.....++.|.|.++.. +|.|   .|+|.+.+..+........  +.+...+.        ....+....+
T Consensus       146 ~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  224 (395)
T 1bih_A          146 ADVTDFDRRITAGPDGNLYFTIVTK-EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA  224 (395)
T ss_dssp             GCCCCCCTTEEECTTSCEEEEEECG-GGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEE
T ss_pred             cccccccccEEEcCCCcEEEEEEee-ccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEE
Confidence            1    13455666778999999997 9999   9999999987743321111  11111110        0002334568


Q ss_pred             CCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        217 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      ..|+.+.|.|.+ .+.|.+.+.|+++|+.+...
T Consensus       225 ~~G~~v~l~C~~-~g~p~~~i~W~~~g~~~~~~  256 (395)
T 1bih_A          225 KAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGN  256 (395)
T ss_dssp             ETTSCEEEEEEE-ECSSCCCCEEEETTEECCCC
T ss_pred             ECCCcEEEEEEe-ccCCCCeEEEEECCEEcCCC
Confidence            899999999999 68899999999999998754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=3.1e-30  Score=210.70  Aligned_cols=223  Identities=18%  Similarity=0.255  Sum_probs=168.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+.+..+.+|++++|.|.+.+.|.+. +.|++++..+..... ....+.          ........++|.|.+
T Consensus       211 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~L~I~~  279 (524)
T 2ec8_A          211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK-YNSWHH----------GDFNYERQATLTISS  279 (524)
T ss_dssp             CCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEE-EEEEEC----------SSSCEEEEEEEEESS
T ss_pred             CCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccc-cccccc----------cCCccceEEEEEECC
Confidence            67777777888899999999999999988776 999999876311100 111000          001123456899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccC----CCcceecCCcEEEEeeeCcccCce-EEEEeCCcccCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM----GNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPL  155 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~~~~  155 (258)
                      + ..+|+|.|+|.+.+..+... ..+.|.|..+|.+...    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+..
T Consensus       280 ~-~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~  357 (524)
T 2ec8_A          280 A-RVNDSGVFMCYANNTFGSAN-VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD  357 (524)
T ss_dssp             C-CTTTCEEEEEEEECSSCEEE-EEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSS
T ss_pred             C-CHHHCEEEEEEEEecCCceE-EEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccC
Confidence            9 99999999999999888777 6889999888765432    346788999999999999999998 999999988766


Q ss_pred             Cc-ceEEec-------CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEE
Q psy14532        156 NR-RQKVFP-------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCL  227 (258)
Q Consensus       156 ~~-~~~~~~-------~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~  227 (258)
                      .. ++....       ...|.|.++.. +|+|.|+|.|.|..+. .+..+.|.|..+|.+...+.   ...|   .|.|.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~i~~~~~---~~~g---~l~C~  429 (524)
T 2ec8_A          358 KWEDYPKSENESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEILTYDR---LVNG---MLQCV  429 (524)
T ss_dssp             SBCCEESCCSSSCCEEEEEEEECSCCG-GGCEEEEEEEECSSCE-EEEEEEEEECEEEEEEEEEC---CSSS---CEEEE
T ss_pred             CccceeEEccCCCceeEEEEEEeecCc-ccCeEEEEEEEecCce-EEEEEEEEEecCCeEeeccc---CcCc---EEEEE
Confidence            54 222222       24799999997 9999999999999884 66778888888887655442   3445   99999


Q ss_pred             eccCCCCceeEEEECCEec
Q psy14532        228 VTKGDPPLTISWLKNGLPI  246 (258)
Q Consensus       228 ~~~~~p~~~~~W~~~g~~l  246 (258)
                      + .|.|.+.|.|+++|..+
T Consensus       430 ~-~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          430 A-AGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             E-EEESCCEEECCCC----
T ss_pred             E-EeecCCEEEEEECCCcc
Confidence            9 68999999999998766

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=6.4e-30  Score=198.61  Aligned_cols=225  Identities=17%  Similarity=0.175  Sum_probs=149.6

Q ss_pred             ceeeeecCCCceEEEEEEeecC-----------CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP-----------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ..++.+.+|+++.|.|.+.+.|           .+.+.|+|++..........           ...........+++|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~-----------~~~~~~~~~~~~~~L~   82 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN-----------FRLPENRISKEKDVLW   82 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECC-----------CCCGGGCEEEETTEEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccccccc-----------ccccCceEeecCCEEE
Confidence            4667799999999999988655           38999999873211100000           0000111223467899


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-----CCCcceecCCcEEEEeee-----CcccCceEEEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-----MGNVSAIAGEPLYLGCPV-----AGYPIESITWQ  147 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-----~~~~~~~~g~~~~l~C~~-----~~~~~~~i~W~  147 (258)
                      |.++ +.+|+|.|+|.+.+..+... ..+.|.|..++....     +....+..|+.+.|.|.+     .+.|.+.+.|+
T Consensus        83 i~~~-~~~D~G~Y~C~a~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~  160 (349)
T 4dep_C           83 FRPT-LLNDTGNYTCMLRNTTYCSK-VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY  160 (349)
T ss_dssp             ESSC-CGGGCEEEEEEEECSSCEEE-EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEE
T ss_pred             EccC-ChhhCEEEEEEEecCCceEE-EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEe
Confidence            9999 99999999999999877665 678888876553222     223456789999999975     66788999999


Q ss_pred             eCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC-CCC--ccceEEEEeec------CCccccCCCCC--cc
Q psy14532        148 KGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ-GRS--SSQNVHISVTV------PPKIAPFEFQP--DL  216 (258)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~  216 (258)
                      +++..+...... ......|.|.++.. +|+|.|+|.+.|.. +..  .+..+.|.|..      +|.+.......  .+
T Consensus       161 k~~~~l~~~~~~-~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v  238 (349)
T 4dep_C          161 MGCYKIQNFNNV-IPEGMNLSFLIALI-SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK  238 (349)
T ss_dssp             ETTEECCSCSSE-EEETTEEEEESCCG-GGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------
T ss_pred             eCCEECCCccce-eecCCEEEEeeeee-cCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEE
Confidence            999887554322 23446799999998 99999999999976 432  35667777766      34433332222  67


Q ss_pred             CCCCeeeEEEEecc---CCCCceeEEEECCEeccc
Q psy14532        217 HSGDRAGVQCLVTK---GDPPLTISWLKNGLPILS  248 (258)
Q Consensus       217 ~~g~~~~l~C~~~~---~~p~~~~~W~~~g~~l~~  248 (258)
                      ..|+.+.|.|.+..   +.|.+.+.|+++|..+..
T Consensus       239 ~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             ------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             ecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence            88999999999953   478899999999999876

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=5.6e-30  Score=202.61  Aligned_cols=221  Identities=26%  Similarity=0.415  Sum_probs=170.5

Q ss_pred             eceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .+.+..+.+|++++|.|.+ .+.|.+.+.|++++.......  .+                .....+++|.|.++ ...|
T Consensus       122 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~--~~----------------~~~~~~~~l~i~~v-~~~d  182 (404)
T 3p3y_A          122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD--KR----------------VSQGHNGDLYFSNV-MLQD  182 (404)
T ss_dssp             CCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC--SS----------------EEECTTSCEEESSC-CSGG
T ss_pred             CCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC--Cc----------------EEEcCCCcEEEEee-eecc
Confidence            3345778999999999998 677888999999864322210  11                12234678999999 8889


Q ss_pred             -ceEEEEEEEeCCccee--eceEEEEEecCC-------eeccC----CCcceecCCcEEEEeeeCcccCceEEEEeCCcc
Q psy14532         87 -RGVYWCTATNKQGRSS--SQNVHISVTGAP-------FVRPM----GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ  152 (258)
Q Consensus        87 -~G~Y~C~~~~~~~~~~--~~~~~l~v~~~~-------~~~~~----~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~  152 (258)
                       +|.|+|.+.+..+...  ...+.+.+...+       .+..+    ....+..|+.+.|.|.+.+.|.+.+.|++++..
T Consensus       183 ~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~  262 (404)
T 3p3y_A          183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD  262 (404)
T ss_dssp             GSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBC
T ss_pred             CCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEE
Confidence             5999999998776532  234555664322       11111    124578899999999999999999999999998


Q ss_pred             cCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCC
Q psy14532        153 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD  232 (258)
Q Consensus       153 ~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  232 (258)
                      +..........++.|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.
T Consensus       263 ~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~  339 (404)
T 3p3y_A          263 LPSDKAKFENFNKALRITNVSE-EDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA-NGN  339 (404)
T ss_dssp             CCTTTEEEEGGGTEEEESSCCG-GGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEE-EEE
T ss_pred             CCCCcccccccCceEEEccCCH-hHCEEEEEEEEeCCCc-EEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEc-ccc
Confidence            8766555455567899999997 9999999999998874 567788889888877777767788999999999999 688


Q ss_pred             CCceeEEEECCEeccccc
Q psy14532        233 PPLTISWLKNGLPILSAM  250 (258)
Q Consensus       233 p~~~~~W~~~g~~l~~~~  250 (258)
                      |.+.+.|+++|..+....
T Consensus       340 p~p~v~W~~~g~~~~~~~  357 (404)
T 3p3y_A          340 PKPTVQWMVNGEPLQSAP  357 (404)
T ss_dssp             SCCEEEEEETTEEGGGSC
T ss_pred             CCCceEEEECCEecCCCC
Confidence            999999999999997654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=5.1e-30  Score=197.64  Aligned_cols=216  Identities=21%  Similarity=0.274  Sum_probs=157.0

Q ss_pred             eeceeeeecCCCceEEEEEEeec---------CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN---------PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ....++.+.+|+++.|.|.+.+.         +.+.+.|+|++..+...   .+                  ...+++|.
T Consensus        34 ~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~---~~------------------~~~~~~L~   92 (329)
T 3oq3_B           34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL---NR------------------RVKNGDLW   92 (329)
T ss_dssp             EEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEEC---ST------------------TEETTEEE
T ss_pred             CCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCcccc---Cc------------------eeecceEE
Confidence            34466779999999999998774         55799999998654321   00                  02367899


Q ss_pred             EeecccCCCce-EEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCccc-CceEEEEeCCcccC
Q psy14532         78 IENVQKDHDRG-VYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLP  154 (258)
Q Consensus        78 i~~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~~~~~~~  154 (258)
                      |.++ +.+|+| .|+|.+.+..|......+.+.+..++... ......+.+|+.+.|.|.+.+.| .+.+.|++++..+.
T Consensus        93 i~~v-~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~  171 (329)
T 3oq3_B           93 IANY-TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI  171 (329)
T ss_dssp             ESSC-CGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECC
T ss_pred             EcCC-ChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCC
Confidence            9999 999999 99999999887654233333333333222 22234467799999999999998 89999999998875


Q ss_pred             CCcceEEecCCeEEEEecccCCCCcEEEEEEEeC--CCCC---ccceEEEEeecCCccc---cCCCCCccCCCCeeeEEE
Q psy14532        155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK--QGRS---SSQNVHISVTVPPKIA---PFEFQPDLHSGDRAGVQC  226 (258)
Q Consensus       155 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~--~~~~---~~~~~~l~v~~~p~~~---~~~~~~~~~~g~~~~l~C  226 (258)
                      .........++.|.|.++.. +|+|.|+|.+.|.  .+..   .+..+.|.|..+|...   ..+....+..|+.+.|.|
T Consensus       172 ~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C  250 (329)
T 3oq3_B          172 IDGTKYSQSGQNLIIHNPEL-EDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITC  250 (329)
T ss_dssp             CSSSSEEEETTEEEECSCCG-GGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEE
T ss_pred             CCCceEecCCCEEEEeecCh-hhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEE
Confidence            33322223378999999997 9999999999986  4322   1234667787766321   134456788999999999


Q ss_pred             EeccCCC---Cc-eeEEEECCEec
Q psy14532        227 LVTKGDP---PL-TISWLKNGLPI  246 (258)
Q Consensus       227 ~~~~~~p---~~-~~~W~~~g~~l  246 (258)
                      .+. +.|   .+ .+.|+++|..+
T Consensus       251 ~~~-g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          251 TAV-STSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEE-ETTCCTTCCEEEEECTTSCB
T ss_pred             EEE-ECCCCCCCcEEEEEECCeee
Confidence            995 655   66 89999999885

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=6.3e-30  Score=201.37  Aligned_cols=231  Identities=23%  Similarity=0.358  Sum_probs=169.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCC---CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.+...+.+..+.+|++++|.|.+.+.+.   +.+.|++++..+.....              .+..+.....+++|.|
T Consensus       103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~--------------~~~~~~~~~~~~~L~i  168 (388)
T 2v5m_A          103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA--------------EYDGKYLVLPSGELHI  168 (388)
T ss_dssp             CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSS--------------CBTTTEEECTTSCEEE
T ss_pred             ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCccccccc--------------CCCCcEEEccCCcEEE
Confidence            355555566778899999999999887543   68999998765432210              0112223345678999


Q ss_pred             eecccCCCc-eEEEEEEEeCCcceee---ceEEEEEecCC-----eec--cCCCcceecCCcEEEEeeeCcccCceEEEE
Q psy14532         79 ENVQKDHDR-GVYWCTATNKQGRSSS---QNVHISVTGAP-----FVR--PMGNVSAIAGEPLYLGCPVAGYPIESITWQ  147 (258)
Q Consensus        79 ~~~~~~~d~-G~Y~C~~~~~~~~~~~---~~~~l~v~~~~-----~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~  147 (258)
                      .++ +.+|+ |.|+|.+.+..+....   ....|.|..+.     ...  ......+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus       169 ~~v-~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~  247 (388)
T 2v5m_A          169 REV-GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY  247 (388)
T ss_dssp             SSC-CGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEE
T ss_pred             ecC-CccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEE
Confidence            999 99999 9999999987543221   22345555431     111  123456788999999999999999999999


Q ss_pred             eCCcccC------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCe
Q psy14532        148 KGVQQLP------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDR  221 (258)
Q Consensus       148 ~~~~~~~------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~  221 (258)
                      +++....      ...+.. ..++.|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+..|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~  324 (388)
T 2v5m_A          248 KFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVV-EDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRP  324 (388)
T ss_dssp             EECTTSSCEEECCCSSSEE-EETTEEEESSCCG-GGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEEESSEEEECTTSC
T ss_pred             ecCCCCcccccccccCcee-cccCEEEECcCCH-HHCeEEEEEEecCCCc-eeEEEEEEEeCCCccccCCCcEEecCCCC
Confidence            9754432      122222 3467899999997 9999999999999884 56777888888877666666677899999


Q ss_pred             eeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        222 AGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       222 ~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      +.|.|.+ .+.|.+.|.|+++|..+..+..
T Consensus       325 ~~l~C~~-~g~p~p~i~W~~~g~~i~~~~~  353 (388)
T 2v5m_A          325 AVFTCQY-TGNPIKTVSWMKDGKAIGHSES  353 (388)
T ss_dssp             EEEEEEE-EEECCCEEEEEETTEECSCCSS
T ss_pred             EEEEEEe-ccccCCeEEEEECCEECccCCC
Confidence            9999999 6889999999999999976544

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.97  E-value=9.8e-30  Score=181.14  Aligned_cols=185  Identities=30%  Similarity=0.423  Sum_probs=148.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+....  .++.+.               ....+|.|.++
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~---------------~~~~~L~i~~~   69 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD--TRYSIR---------------ENGQLLTILSV   69 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTC--TTEEEE---------------GGGTEEEESSC
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccC--ccEEEc---------------CCccEEEEcCC
Confidence            5778788888899999999999999988888999999998775431  111111               12346999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                       +..|+|.|+|.+.+..+......+.|.|..+|.+.. +....+..|+.+.|.|.+.+.|.+.+.|++++..+....+..
T Consensus        70 -~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~  148 (192)
T 2iep_A           70 -EDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA  148 (192)
T ss_dssp             -CGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEE
T ss_pred             -CcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEE
Confidence             999999999999998776544666777776654443 445678899999999999999999999999999888777777


Q ss_pred             EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       161 ~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      ...++.|.|.++.. +|+|.|+|.+.|..+...+..+.|.|..+|
T Consensus       149 ~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          149 VLESGSLRIHNVQK-EDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             ECTTSCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EecCCcEEEecCCh-hhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            77888999999997 999999999999988665777888887765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=9.4e-30  Score=201.96  Aligned_cols=210  Identities=17%  Similarity=0.243  Sum_probs=151.9

Q ss_pred             eecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532         13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++..+........                     .+.+....+....|+|.|+|
T Consensus       150 ~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~d~G~Y~C  208 (423)
T 3qs7_E          150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP---------------------AVVKKEEKVLHELFGTDIRC  208 (423)
T ss_dssp             EEECSSSSCEEEEEEESSCCEEEEEEC----------------------------------CEEECCSEECCCCSSCEEE
T ss_pred             EeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccc---------------------ccccccceEEecccCeEEEE
Confidence            456788999999999999999999998764432100000                     00001111115679999999


Q ss_pred             EEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcce---E------Ee
Q psy14532         93 TATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQ---K------VF  162 (258)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~---~------~~  162 (258)
                      .|.|..|......+.|.|...+.. .+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......   .      ..
T Consensus       209 ~A~N~~G~~~~~~~~l~V~~~p~~-~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~  287 (423)
T 3qs7_E          209 CARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI  287 (423)
T ss_dssp             EEECSSCEEEEECEEEESSSCCCS-STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEE
T ss_pred             EEEcCCCCcceeeEEEEEecCCcc-CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeE
Confidence            999998876645577777766544 334567889999999999998 667899999999877543211   1      12


Q ss_pred             cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC--CCCccCCCCeeeEEEEeccCCCCceeEEE
Q psy14532        163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE--FQPDLHSGDRAGVQCLVTKGDPPLTISWL  240 (258)
Q Consensus       163 ~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  240 (258)
                      ..+.|.|.++.. +|+|.|+|.|.|.    .+..+.|.|..+|.+...+  ....+.+|+.+.|.|.+ .+.|.+.|.|+
T Consensus       288 ~~~~L~I~~v~~-~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~-~g~P~p~i~W~  361 (423)
T 3qs7_E          288 RILFAFVSSVAR-NDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWT  361 (423)
T ss_dssp             EEEEEEESSCCT-TTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEE-EEESCCEEEEE
T ss_pred             EEEEEEEeecCH-HHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEE-EEcCCCeEEEE
Confidence            234699999997 9999999999987    5677888888888765443  24567889999999999 68899999999


Q ss_pred             ECCEeccccc
Q psy14532        241 KNGLPILSAM  250 (258)
Q Consensus       241 ~~g~~l~~~~  250 (258)
                      ++|..|..+.
T Consensus       362 k~g~~l~~~~  371 (423)
T 3qs7_E          362 FSRKSFPCEQ  371 (423)
T ss_dssp             ETTEEEECBC
T ss_pred             ECCEECCCcc
Confidence            9999997653

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=9.1e-30  Score=194.91  Aligned_cols=242  Identities=17%  Similarity=0.241  Sum_probs=162.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCC-----eEEEeeCCEeCcCCcccc--ceecccceeeccccccceeeeeCCcEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-----HISWKLDGYPLAGDRHEN--KNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ++..|.++.+..|++|+|.|.+.+.+.+     .+.|+|++..........  ......................+++|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4567888999999999999999876544     489999875432110000  000000000000000111122356899


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPL  155 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~  155 (258)
                      |.++ +.+|+|.|+|.+.+.........+.|.+...|.... .....+..++.+.+.|.+. +.|.+.+.|++++..+..
T Consensus        83 I~~v-~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~  161 (313)
T 4fqp_A           83 MFGL-RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN  161 (313)
T ss_dssp             ECSC-CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred             ECcC-ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence            9999 999999999998765544444777777777664433 3445566788889999875 678999999999887654


Q ss_pred             CcceEEecCC------eEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEEEeecCCccccCCC-CCccCCCCeeeEEEE
Q psy14532        156 NRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEF-QPDLHSGDRAGVQCL  227 (258)
Q Consensus       156 ~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~  227 (258)
                      ........++      .|.|.+... +|+|.|+|.|.|..+.. ....+.|.|..+|.+...+. ...+..|+.++|.|.
T Consensus       162 ~~~~~~~~~~~~~~~s~l~i~~~~~-~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~  240 (313)
T 4fqp_A          162 TSQVPGFLSGTVTVTSLWILVPSSQ-VDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD  240 (313)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGG-GTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEE
T ss_pred             cceeeeecccccccceeeeeccccc-ccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEE
Confidence            3333322332      367777775 89999999999976532 34556677777787654433 344667899999999


Q ss_pred             eccCCCCc-eeEEEECCEecccc
Q psy14532        228 VTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       228 ~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      + .|+|.+ .|.|+++|..+...
T Consensus       241 ~-~g~P~p~~v~W~~~~~~l~~~  262 (313)
T 4fqp_A          241 A-RSNPEPTGYNWSTTMGPLPPF  262 (313)
T ss_dssp             E-EEESCCCEEEEEETTBSCCTT
T ss_pred             e-cCCCCCcEEEEEECCEECCCc
Confidence            9 588877 79999999988654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=1.5e-30  Score=199.34  Aligned_cols=221  Identities=18%  Similarity=0.216  Sum_probs=160.5

Q ss_pred             ceeeeecCCCceEEEEEEeecC-CCeEEEeeCCEeCcCCc-cccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDR-HENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      ...+.+.+|+++.|.|.+.+.+ .+.+.|+|++..+.... ...+                 ....+++|.|.++ +.+|
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~-----------------~~~~~~~L~i~~v-~~~D   73 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASR-----------------IHQHKEKLWFVPA-KVED   73 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSS-----------------SEECSSBEECTTC-CGGG
T ss_pred             ceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCc-----------------EeccCCeEEECCC-Chhh
Confidence            3457789999999999998876 77999999975432210 0011                 1123568999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEEEec-CCeecc----CCCcceecCCcEEEEeee------CcccCceEEEEeCCcccCC
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHISVTG-APFVRP----MGNVSAIAGEPLYLGCPV------AGYPIESITWQKGVQQLPL  155 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~v~~-~~~~~~----~~~~~~~~g~~~~l~C~~------~~~~~~~i~W~~~~~~~~~  155 (258)
                      +|.|+|.+.+..+... ..+.+.+.. +|.+..    .....+..|+.+.|.|.+      .+.|.+.+.|++++..+..
T Consensus        74 ~G~Y~C~a~n~~g~~~-~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~  152 (315)
T 1itb_B           74 SGHYYCVVRNSSYCLR-IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL  152 (315)
T ss_dssp             CSCCEECCCSSSCCCC-EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC
T ss_pred             CEEEEEEEeCCceEEE-EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC
Confidence            9999999998876554 444455433 222211    112457789999999998      7889999999999988865


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEE-eCCCCCc--cceEEEEee-----cCCccccCCCC-CccCCCCeeeEEE
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTAT-NKQGRSS--SQNVHISVT-----VPPKIAPFEFQ-PDLHSGDRAGVQC  226 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C  226 (258)
                      ........++.|.|.++.. +|+|.|+|.+. +..+...  ...+.+.+.     .+|.+...+.. ..+..|+.+.|.|
T Consensus       153 ~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C  231 (315)
T 1itb_B          153 DNIHFSGVKDRLIVMNVAE-KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC  231 (315)
T ss_dssp             CSSSEEEETTEEEESSCCG-GGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEE
T ss_pred             ccceEeecCceEEEEecee-hhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEE
Confidence            4444455677999999997 99999999999 6666432  233444333     44554433322 4688999999999


Q ss_pred             EeccCCCCceeEEEECCEeccccc
Q psy14532        227 LVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       227 ~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      .+ .+.|.+.+.|+++|..+....
T Consensus       232 ~~-~g~P~p~i~W~~~g~~i~~~~  254 (315)
T 1itb_B          232 NV-TGQLSDIAYWKWNGSVIDEDD  254 (315)
T ss_dssp             EE-EECTTSEEEEEETTEECCTTC
T ss_pred             EE-ecCCCCeeEEEECCEECCccc
Confidence            99 588999999999999998754

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=197.32  Aligned_cols=218  Identities=17%  Similarity=0.252  Sum_probs=165.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.    +.|++++.....        ..             .....++|.|.++
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--------~~-------------~~~~~~~L~i~~~   58 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWT--------LY-------------SDGSSSILSTNNA   58 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCE--------EC-------------CBTTEEEEEESSC
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceE--------Ee-------------ccCceEEEEEccc
Confidence            7889888889999999999999998763    999965432110        00             0011347999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe--eccCCCcceecCCcEEEEeeeCcccC--ceEEEEeC-CcccCCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF--VRPMGNVSAIAGEPLYLGCPVAGYPI--ESITWQKG-VQQLPLN  156 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~--~~i~W~~~-~~~~~~~  156 (258)
                       +..|+|.|+|.+.+..+... ..+.|.|..++.  ........+.+|+.+.|.|.+.+ +.  +.+.|+++ +..+...
T Consensus        59 -~~~d~G~Y~C~~~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~  135 (292)
T 4dkd_C           59 -TFQNTGTYRCTEPGDPLGGS-AAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRH  135 (292)
T ss_dssp             -CGGGCSCEEECCCC----CC-EEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSS
T ss_pred             -ccccCEEEEEEEccCCCCcc-eEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccC
Confidence             99999999999998776664 778888877653  33455677889999999999987 43  78999997 5555555


Q ss_pred             cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCC
Q psy14532        157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGD  232 (258)
Q Consensus       157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  232 (258)
                      .+.....++.|.|.++.. +|+|.|+|.+.+..+...+..+.|.|..    +|.+...+....+..|+.+.|.|.+.+..
T Consensus       136 ~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~  214 (292)
T 4dkd_C          136 TNYSFSPWHGFTIHRAKF-IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD  214 (292)
T ss_dssp             CCEECCSSSCCEETTCCG-GGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESS
T ss_pred             CcccccCCceEEECCCCH-HHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCC
Confidence            556666667799999997 9999999999987765556688888886    77766666666678999999999996445


Q ss_pred             CCceeEEEECCEeccc
Q psy14532        233 PPLTISWLKNGLPILS  248 (258)
Q Consensus       233 p~~~~~W~~~g~~l~~  248 (258)
                      +.+.+.|++++..+..
T Consensus       215 ~~~~~~w~~~~~~~~~  230 (292)
T 4dkd_C          215 VNFDVFLQHNNTKLAI  230 (292)
T ss_dssp             SCCEEECCBSSCCCCC
T ss_pred             CceEEEEeCCCccccc
Confidence            5578999999887653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.97  E-value=1.2e-28  Score=178.36  Aligned_cols=190  Identities=27%  Similarity=0.474  Sum_probs=146.4

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+....  .++.+..            ......+|.|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~~------------~~~~~~~L~i~~   70 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ--SRYTVLE------------QPGGISILRIEP   70 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTS--TTEEEEE------------ETTTEEEEEESS
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCc--ceeEEEE------------cCCCeEEEEEEe
Confidence            48999999999999999999999999998889999999998875321  1111110            000114799999


Q ss_pred             cccC-CCceEEEEEEEeCCcceeeceEEEEEecC-------Ceec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCc
Q psy14532         81 VQKD-HDRGVYWCTATNKQGRSSSQNVHISVTGA-------PFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ  151 (258)
Q Consensus        81 ~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~  151 (258)
                      + +. .|+|.|+|.+.+..+...+..+.|.|...       |.+. .+....+..|+.+.|.|.+.+.|.+.+.|++++.
T Consensus        71 v-~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~  149 (212)
T 2yd1_A           71 V-RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQT  149 (212)
T ss_dssp             C-CTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTE
T ss_pred             c-CCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCe
Confidence            9 88 99999999999988874447888888765       3222 2445667889999999999999999999999998


Q ss_pred             ccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        152 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       152 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      .+..........++.|.|.++.. +|.|.|+|.|.|..|...+..+.|.|...+.
T Consensus       150 ~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          150 KVDMSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             ECCTTSTTEEEETTEEEECSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EcccCCCeEEccCCeEEEccCCh-hhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            87654333344567999999997 9999999999999986655667888876543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=3.4e-29  Score=197.17  Aligned_cols=222  Identities=21%  Similarity=0.429  Sum_probs=163.9

Q ss_pred             CCcceeecee-eeecCCCceEEEEEEeecCCCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.|...|.+ +.+.+|+.++|.|.+.+.|.+.+.|+| ++..+.....                  ......+++|.|.
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~------------------~~~~~~~~~L~i~   64 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPG------------------LRQISSDGKLVFP   64 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTT------------------TBEECSTTEEEEC
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCC------------------ceEEcCCceEEec
Confidence            6888877765 457899999999999999999999999 7766643210                  0112246789999


Q ss_pred             ecccCCC------ceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCccc---CceEEEEeC
Q psy14532         80 NVQKDHD------RGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYP---IESITWQKG  149 (258)
Q Consensus        80 ~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~  149 (258)
                      ++ +..|      +|.|+|.+.+..+...+..+.|.+..++.+. ......+.+|+.+.|.|.+.+.+   .+.+.|+++
T Consensus        65 ~~-~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~  143 (388)
T 2v5m_A           65 PF-RAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD  143 (388)
T ss_dssp             CC-CGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEET
T ss_pred             cc-ChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeC
Confidence            99 8877      9999999999888755577788887665433 34556788999999999998754   378999998


Q ss_pred             CcccCC-----CcceEEecCCeEEEEecccCCCC-cEEEEEEEeCCCCCcc---ceEEEEeecC-----Ccccc-CCCCC
Q psy14532        150 VQQLPL-----NRRQKVFPNGTLLIENVQKDHDR-GVYWCTATNKQGRSSS---QNVHISVTVP-----PKIAP-FEFQP  214 (258)
Q Consensus       150 ~~~~~~-----~~~~~~~~~~~l~i~~~~~~~~~-g~y~C~~~~~~~~~~~---~~~~l~v~~~-----p~~~~-~~~~~  214 (258)
                      +..+..     ..+..+..++.|.|.++.. +|. |.|+|.+.+..+....   ....|.|..+     |.+.. .....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~  222 (388)
T 2v5m_A          144 EEENYFPGAEYDGKYLVLPSGELHIREVGP-EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL  222 (388)
T ss_dssp             TCCEECSSSCBTTTEEECTTSCEEESSCCG-GGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE
T ss_pred             CCcccccccCCCCcEEEccCCcEEEecCCc-cccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce
Confidence            876532     3455566778999999997 898 9999999997542221   1234555543     21111 12234


Q ss_pred             ccCCCCeeeEEEEeccCCCCceeEEEECCE
Q psy14532        215 DLHSGDRAGVQCLVTKGDPPLTISWLKNGL  244 (258)
Q Consensus       215 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~  244 (258)
                      .+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus       223 ~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~  251 (388)
T 2v5m_A          223 ELMVAHTISLLCPA-QGFPAPSFRWYKFIE  251 (388)
T ss_dssp             EEETTSCEEECCCC-EEESCCEEEEEEECT
T ss_pred             EEeeCCcEEEEEEC-CCCCCCEEEEEecCC
Confidence            57789999999999 588999999999754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=205.04  Aligned_cols=212  Identities=17%  Similarity=0.293  Sum_probs=153.2

Q ss_pred             eceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .+.+..+.+|+++.|.|.+. +.|.+.+.|++++..+.....   ....       .+.........++|.|.++ +.+|
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~---~~~~-------~~~~~~~~~~~~~L~I~~v-~~~D  301 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY---FEMS-------TYSTNRTMIRILFAFVSSV-ARND  301 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGE---EEEE-------EEETTTEEEEEEEEEESSC-CGGG
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCce---eeee-------eeccCcceeeEEEEEEccC-Cccc
Confidence            45677899999999999997 788999999999876654311   1000       0000111223457999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEEEecCCeeccC---CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM---GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP  163 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~  163 (258)
                      +|.|+|.+.|.    ....+.|.|..++.+...   ....+.+|+.+.|.|.+.+.|.|.+.|++++..+....... ..
T Consensus       302 sG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~  376 (527)
T 3qs9_E          302 TGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-DN  376 (527)
T ss_dssp             CEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-SS
T ss_pred             CeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc-cC
Confidence            99999999988    337788888877754432   23567889999999999999999999999998876544322 24


Q ss_pred             CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECC
Q psy14532        164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG  243 (258)
Q Consensus       164 ~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g  243 (258)
                      ...|.|.++.. +|+|.|+|.|.|..+. ....+.|.|..+|.+...+.      |  ..|.|.+ .|.|.|.|.|++++
T Consensus       377 ~~~L~I~~v~~-~D~G~YtC~A~N~~g~-~~~~~~L~V~~~P~i~~~~~------~--~~l~C~a-~g~P~p~i~W~~~~  445 (527)
T 3qs9_E          377 GYSISKFCNHK-HQPGEYIFHAENDDAQ-FTKMFTLNIRRKPQVLAEAS------A--SQASCFS-DGYPLPSWTWKKCS  445 (527)
T ss_dssp             SSEEEEECCCT-TCCSCEEEEEEETTEE-EEEEEEEC--CCCEEEECCC------C--E---EEE-ECSSCCEEEEECCC
T ss_pred             CcEEEEecCCc-ccCEEEEEEEEeCCCc-EEEEEEEEEecCCeEEEeCC------C--CEEEEEE-EEEcCCeEEEEECC
Confidence            56899999997 9999999999999874 44578888988887654431      2  3579999 69999999999876


Q ss_pred             Eec
Q psy14532        244 LPI  246 (258)
Q Consensus       244 ~~l  246 (258)
                      ...
T Consensus       446 ~~~  448 (527)
T 3qs9_E          446 DKS  448 (527)
T ss_dssp             ---
T ss_pred             CCc
Confidence            554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=3.5e-29  Score=204.50  Aligned_cols=210  Identities=15%  Similarity=0.273  Sum_probs=167.0

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+    .+.|+|++..+.                        .....++|.|.+
T Consensus        35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------------------------~~~~~~~L~I~~   86 (524)
T 2ec8_A           35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------------------------NENKQNEWITEK   86 (524)
T ss_dssp             CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------------------------EEECSSEEEESS
T ss_pred             CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------------------------ccCccceEEEcc
Confidence            3778877778889999999999999875    899999886541                        012357899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCcccCceEEEEe-CCcccCCCcc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRR  158 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~  158 (258)
                      + +.+|+|.|+|.+.+  +.  +..+.|.|..++.. .......+.+|+.+.|.|.+.+.+.+.+.|++ ++..+....+
T Consensus        87 ~-~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~  161 (524)
T 2ec8_A           87 A-EATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR  161 (524)
T ss_dssp             C-CSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCE
T ss_pred             c-chhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCc
Confidence            9 99999999999998  32  36777888765433 33556778899999999999986668999998 7888877777


Q ss_pred             eEEecCCeEEEEecccCCCCc-EEEEEEEeCCCCCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        159 QKVFPNGTLLIENVQKDHDRG-VYWCTATNKQGRSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       159 ~~~~~~~~l~i~~~~~~~~~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      +....++.|.|.++.. +|+| .|+|.+.+..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+. +.|
T Consensus       162 ~~~~~~~~L~i~~~~~-~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-g~p  239 (524)
T 2ec8_A          162 FIPDPKAGIMIKSVKR-AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIK-DVS  239 (524)
T ss_dssp             EEEETTTEEEEESCCG-GGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEE-ESS
T ss_pred             eeECCCccEEEeccch-hhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEe-cCC
Confidence            7777788999999997 9999 99999999876555667888886    566666666666789999999999995 777


Q ss_pred             Cce-eEEEECCEe
Q psy14532        234 PLT-ISWLKNGLP  245 (258)
Q Consensus       234 ~~~-~~W~~~g~~  245 (258)
                      .+. +.|+++|..
T Consensus       240 ~p~~i~W~~~~~~  252 (524)
T 2ec8_A          240 SSVYSTWKRENSQ  252 (524)
T ss_dssp             TTCEEEEEETTCS
T ss_pred             CcEEEEEEeCCCC
Confidence            665 999999988

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=1.5e-29  Score=198.91  Aligned_cols=226  Identities=24%  Similarity=0.350  Sum_probs=166.0

Q ss_pred             CCcceeeceeeee---cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTL---QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.|...|.+..+   .+|++++|.|.+.+.|.+.+.|+|+|..+..... .++                 ...+++|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~-~~~-----------------~~~~~~L~i   65 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD-SRY-----------------RLVAGDLVI   65 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTT-SSE-----------------EEETTEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCC-ccE-----------------EeeCCeEEE
Confidence            6888888888876   7999999999999988899999999988764311 111                 123678999


Q ss_pred             eecccC-CCceEEEEEEEeCCcceeeceEEEEEecCCeec--cCCCcceecCCcEEEEeee-CcccCceEEEEeCCcccC
Q psy14532         79 ENVQKD-HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR--PMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLP  154 (258)
Q Consensus        79 ~~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~  154 (258)
                      .++ .. .|+|.|+|.+.+..+...+..+.|.|...+...  ......+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        66 ~~~-~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~  144 (382)
T 1cs6_A           66 SNP-VKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF  144 (382)
T ss_dssp             ESC-CHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred             ecc-cccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc
Confidence            999 75 999999999999887665456667765443322  2455678899999999996 456888999999987643


Q ss_pred             --CCcceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCC----ccceEEEEeec------CCcccc-CCCCCccCCCC
Q psy14532        155 --LNRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTV------PPKIAP-FEFQPDLHSGD  220 (258)
Q Consensus       155 --~~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~----~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~  220 (258)
                        ...+... ...+.|.|.++.. +|.|.|+|.+.+..+..    .+..+.|.+..      +|.+.. .+....+..|+
T Consensus       145 ~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~  223 (382)
T 1cs6_A          145 IPADGRRFVSQTTGNLYIAKTEA-SDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ  223 (382)
T ss_dssp             CCCCSSEEECTTTCCEEESSCCG-GGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTC
T ss_pred             cccCceEEEecCceEEEEEeeCc-ccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCC
Confidence              2222222 2346899999997 99999999999876321    13344555432      232222 23355678899


Q ss_pred             eeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        221 RAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       221 ~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      .+.|.|.+ .+.|.+.+.|++++..+..
T Consensus       224 ~v~l~C~~-~g~p~~~i~W~~~~~~~~~  250 (382)
T 1cs6_A          224 MVTLECFA-FGNPVPQIKWRKLDGSQTS  250 (382)
T ss_dssp             CEEEECEE-EEESCCEEEEEECCSCCSC
T ss_pred             eEEEEEEE-ccCCCCEEEEEECCccccc
Confidence            99999999 5888899999998877653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=1.9e-29  Score=198.26  Aligned_cols=220  Identities=24%  Similarity=0.378  Sum_probs=165.1

Q ss_pred             ceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          9 FIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      +....+.+|++++|.|.+ .+.|.+.+.|++++..+..... .+..               ....+++|.|.++ +..|+
T Consensus       108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~-~~~~---------------~~~~~~~L~i~~~-~~~d~  170 (382)
T 1cs6_A          108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD-GRRF---------------VSQTTGNLYIAKT-EASDL  170 (382)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC-SSEE---------------ECTTTCCEEESSC-CGGGC
T ss_pred             CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccC-ceEE---------------EecCceEEEEEee-CcccC
Confidence            445678899999999985 4567889999998765432111 1110               1112468999999 99999


Q ss_pred             eEEEEEEEeCCccee----eceEEEEEec------CCeec--cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC
Q psy14532         88 GVYWCTATNKQGRSS----SQNVHISVTG------APFVR--PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL  155 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~----~~~~~l~v~~------~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~  155 (258)
                      |.|+|.+.+..+...    +..+.|.+..      +|.+.  .+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       171 G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~  250 (382)
T 1cs6_A          171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS  250 (382)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC
T ss_pred             eeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc
Confidence            999999998764321    2344555432      12221  23456788999999999999999999999998876543


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCc
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL  235 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  235 (258)
                      .   .......|.|.++.. +|.|.|+|.+.|..+. ....+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+
T Consensus       251 ~---~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p  324 (382)
T 1cs6_A          251 K---WLSSEPLLHIQNVDF-EDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA-SGKPRP  324 (382)
T ss_dssp             C---CSBSSSEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEE-EEESCC
T ss_pred             E---EecCCcEEEEccCCh-hhCEEEEEEEEcCCCe-EEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEe-eeecCC
Confidence            1   123456899999997 9999999999998874 556778888888877666666778899999999999 688999


Q ss_pred             eeEEEECCEecccccc
Q psy14532        236 TISWLKNGLPILSAMG  251 (258)
Q Consensus       236 ~~~W~~~g~~l~~~~~  251 (258)
                      .+.|+++|..+..+..
T Consensus       325 ~v~W~~~g~~~~~~~~  340 (382)
T 1cs6_A          325 AVRWLRDGQPLASQNR  340 (382)
T ss_dssp             EEEEEETTEECCCCSS
T ss_pred             EEEEEECCEECCCCce
Confidence            9999999999987653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.97  E-value=1.4e-28  Score=188.64  Aligned_cols=219  Identities=17%  Similarity=0.156  Sum_probs=157.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+. ..+.+|++++|.|.+.+. .+.+.|+|++..+....   .                 .....++|.|.++
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~---~-----------------~~~~~~~L~I~~v   81 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF---H-----------------GRIFQESFNMSPV   81 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH---H-----------------HCCBSSCEEECSC
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee---c-----------------CCcceEEEEECCC
Confidence            678887777 678899999999999877 67899999987643210   0                 0113568999999


Q ss_pred             ccCCCceEEEEEEEeCCc----ceeeceEEEEEecC---CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQG----RSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       +.+|+|.|+|.+.+...    ...+..+.|.|...   |.+.......+.+|+.++|.|.+.+ +.+.+.|++++..+.
T Consensus        82 -~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  159 (316)
T 3vh8_G           82 -TTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDI-MFEHFFLHKEGISKD  159 (316)
T ss_dssp             -CGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESS-CCSEEEEEETTCCSC
T ss_pred             -CcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCC-CCcEEEEEECCCccc
Confidence             99999999999986422    12236677777543   3333333344789999999999954 556899999988764


Q ss_pred             CCcceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCC----ccceEEEEeec---CCccccCCCCCccCCCCeee
Q psy14532        155 LNRRQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTV---PPKIAPFEFQPDLHSGDRAG  223 (258)
Q Consensus       155 ~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~----~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~  223 (258)
                      .......    ...+.|.|.++.. +|+|.|+|.+.|..+..    .+..+.|.|..   +|.+...+ ...+.+|+.++
T Consensus       160 ~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~  237 (316)
T 3vh8_G          160 PSRLVGQIHDGVSKANFSIGPMML-ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP-GPKVQAGESVT  237 (316)
T ss_dssp             CEEEECEEETTEEEEEEEECSCCG-GGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES-CSCCCTTSCCE
T ss_pred             cceeeeeecCCCceEEEEECCCCh-hhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC-CCeecCCCcEE
Confidence            3221111    1345799999997 99999999999987632    25667777764   33333333 23678899999


Q ss_pred             EEEEeccCCCCceeEEEECCEeccc
Q psy14532        224 VQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       224 l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      |.|.+.  .|.+.|.|+++|..+..
T Consensus       238 L~C~~~--~~~~~~~W~k~g~~~~~  260 (316)
T 3vh8_G          238 LSCSSR--SSYDMYHLSREGGAHER  260 (316)
T ss_dssp             EEEEES--SCCSEEEEEETTSSCCE
T ss_pred             EEEECC--CCCcEEEEEECCCcCCC
Confidence            999994  46789999999988764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=3e-29  Score=197.90  Aligned_cols=226  Identities=23%  Similarity=0.375  Sum_probs=165.5

Q ss_pred             eceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .+.+..+.+|+++.|.|.+ .+.|.+.+.|++++........            ...+..+.....+++|.|.++ +..|
T Consensus       106 ~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~------------~~~~~~~~~~~~~~~L~i~~v-~~~d  172 (395)
T 1bih_A          106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD------------VTDFDRRITAGPDGNLYFTIV-TKED  172 (395)
T ss_dssp             EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGC------------CCCCCTTEEECTTSCEEEEEE-CGGG
T ss_pred             CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccc------------cccccccEEEcCCCcEEEEEE-eecc
Confidence            3456778899999999996 6788899999997521110000            000111223335678999999 9999


Q ss_pred             ce---EEEEEEEeCCcceeeceE--EEEEecC----------CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCc
Q psy14532         87 RG---VYWCTATNKQGRSSSQNV--HISVTGA----------PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ  151 (258)
Q Consensus        87 ~G---~Y~C~~~~~~~~~~~~~~--~l~v~~~----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~  151 (258)
                      +|   .|+|.+.+..+.......  .+.+...          |.+ .+....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       173 ~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~  251 (395)
T 1bih_A          173 VSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGK  251 (395)
T ss_dssp             CCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTE
T ss_pred             CCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCCCCeEEEEECCE
Confidence            99   999999998776431111  1111111          111 2345678899999999999999999999999998


Q ss_pred             ccCCCcceEEe-----cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCC-CccCCCCeeeEE
Q psy14532        152 QLPLNRRQKVF-----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQ-PDLHSGDRAGVQ  225 (258)
Q Consensus       152 ~~~~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~  225 (258)
                      .+.......+.     ....|.|.++.. +|+|.|+|.+.|..+...+..+.|.|..+|.+...+.. ..+..|+.+.|.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~  330 (395)
T 1bih_A          252 DVNGNPEDRITRHNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP  330 (395)
T ss_dssp             ECCCCTTSSEESCSSSTTSEEEESSCCG-GGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEE
T ss_pred             EcCCCCceeEEEEecCCCceEEEccCCh-hhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEE
Confidence            77543322221     122699999997 99999999999998865555888999988887766655 678999999999


Q ss_pred             EEeccCCCCceeEEEECCEecccc
Q psy14532        226 CLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       226 C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      |.+ .+.|.+.+.|+++|..+..+
T Consensus       331 C~~-~g~p~p~v~W~~~g~~~~~~  353 (395)
T 1bih_A          331 CKV-TGLPAPNVVWSHNAKPLSGG  353 (395)
T ss_dssp             CEE-EEESCCCCEEEETTEECCSS
T ss_pred             EEE-CcccCCeeEEEECCEECCCC
Confidence            999 58899999999999999765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=1.3e-30  Score=201.37  Aligned_cols=216  Identities=26%  Similarity=0.399  Sum_probs=97.2

Q ss_pred             eceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .+.+..+.+|++++|.|.+.+. |.+.+.|+|++..+...   .++.+                 .+++|.|.++ +.+|
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~---~~~~~-----------------~~~~L~i~~v-~~~D   72 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS---ERVLV-----------------GPQRLQVLNA-SHED   72 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCc---ccEEe-----------------ccceEEEeec-cccc
Confidence            4788899999999999999876 57799999998776433   11111                 2568999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEEEecCC----------------------eeccC-----CCcceecCCcEEEEeeeCcc
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHISVTGAP----------------------FVRPM-----GNVSAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~----------------------~~~~~-----~~~~~~~g~~~~l~C~~~~~  139 (258)
                      +|.|+|.+.+. +... ..+.|.|...+                      .+..+     ....+..|+.+.|.|.+.+.
T Consensus        73 ~G~Y~C~a~n~-~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~  150 (334)
T 1ry7_B           73 SGAYSCRQRLT-QRVL-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGN  150 (334)
T ss_dssp             ------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCS
T ss_pred             CEEEEEEEEeC-CeEE-EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCC
Confidence            99999999988 5443 66667765432                      21111     12457789999999999999


Q ss_pred             cCceEEEEeCCcccCCCcce----EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC----cccc-C
Q psy14532        140 PIESITWQKGVQQLPLNRRQ----KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP----KIAP-F  210 (258)
Q Consensus       140 ~~~~i~W~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p----~~~~-~  210 (258)
                      |.+.+.|++++..+....+.    .......|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|...+    .+.. .
T Consensus       151 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~  228 (334)
T 1ry7_B          151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL  228 (334)
T ss_dssp             SCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCG-GGCCCEEEEEEETTEE-EEEEEEEEEECCCCSSCBCCTTC
T ss_pred             CCCeEEEEECCEECcccccccceecccceEEEEECCCCc-ccCEEEEEEEEeCCCC-EEEEEEEEEecCCCCCCceEecC
Confidence            99999999998877644322    112345799999997 9999999999998763 4566777776532    2221 2


Q ss_pred             CCCCccCCCCeeeEEEEeccCCCCceeEEEE----CCEecccc
Q psy14532        211 EFQPDLHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSA  249 (258)
Q Consensus       211 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~g~~l~~~  249 (258)
                      +....+..|+.+.|.|.+ .+.|.+.+.|++    +|..+..+
T Consensus       229 ~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~g~~~~~~  270 (334)
T 1ry7_B          229 PANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPD  270 (334)
T ss_dssp             SCCEEEESSCCEEECCCC-BCSSCEEEEEEECCCGGGCSBCTT
T ss_pred             CCceEEeCCCCEEEEEEE-ecCCCCeEEEEECCcCCCccccCC
Confidence            345568889999999999 689999999999    67766543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=1.2e-28  Score=211.14  Aligned_cols=218  Identities=27%  Similarity=0.482  Sum_probs=172.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.+...+....+.+|++++|.|.+.+.|.+.+.|++++..+...                          +++|.|.++
T Consensus       343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~--------------------------~~~L~i~~v  396 (816)
T 3dmk_A          343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------------------ESVLRIESV  396 (816)
T ss_dssp             EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC--------------------------SSEEEESSC
T ss_pred             CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC--------------------------CCEEEEcCC
Confidence            345556677788999999999999999999999999999877543                          457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe---cCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT---GAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +.+|+|.|+|.+.+..+... ..+.|.|.   .+|.+. ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus       397 -~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~  474 (816)
T 3dmk_A          397 -KKEDKGMYQCFVRNDRESAE-ASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND  474 (816)
T ss_dssp             -CGGGCEEEEEEEECSSCEEE-ECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCT
T ss_pred             -CHHHCEEEEEEEECCCCcEE-EEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCC
Confidence             99999999999999887655 55566663   334333 2445678899999999999999999999999998876655


Q ss_pred             ceEE----ecCC----eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEec
Q psy14532        158 RQKV----FPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT  229 (258)
Q Consensus       158 ~~~~----~~~~----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  229 (258)
                      +...    ..++    .|.|.++.. +|+|.|+|.+.|..+. ....+.|.|..+|.+.... ...+..|+.+.|.|.+ 
T Consensus       475 ~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~-~~~v~~G~~v~l~C~~-  550 (816)
T 3dmk_A          475 RYQVGQYVTVNGDVVSYLNITSVHA-NDGGLYKCIAKSKVGV-AEHSAKLNVYGLPYIRQME-KKAIVAGETLIVTCPV-  550 (816)
T ss_dssp             TEEEEEEECTTSCEEEEEEESSCCT-TTCEEEEEEEEETTEE-EEEEEEEEECSSCEECCCC-CEEEETTCCEEEECCE-
T ss_pred             CcccccEEecCCCcEEEEEEeeccc-cCCEEEEEEEEECCCe-EEEEEEEEEecCCeeEccC-CeEEecCCeEEEEEEe-
Confidence            4432    1222    588999987 9999999999998873 5567788888887654333 4567889999999999 


Q ss_pred             cCCCCceeEEEECCEecccccc
Q psy14532        230 KGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       230 ~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      .+.|.+.+.|+++|..+..+..
T Consensus       551 ~g~p~~~i~W~k~~~~l~~~~~  572 (816)
T 3dmk_A          551 AGYPIDSIVWERDNRALPINRK  572 (816)
T ss_dssp             ECSSEEEEEEEETTEESCCSTT
T ss_pred             cCCCCCEEEEEECCeEcccCCc
Confidence            6888899999999999876543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.96  E-value=2e-28  Score=177.13  Aligned_cols=187  Identities=27%  Similarity=0.401  Sum_probs=141.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+...... .....              ......|.|.++
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~-~~~~~--------------~~~~~~L~i~~v   70 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFE-VIEFD--------------DGSGSVLRIQPL   70 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEE-EEEEG--------------GGTEEEEEECSC
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCcee-EEEEc--------------CCCceEEEEecc
Confidence            788999999999999999999999999889999999999887643110 00000              001246899999


Q ss_pred             cc-CCCceEEEEEEEeCCcceeeceEEEEEecC-------Ceec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcc
Q psy14532         82 QK-DHDRGVYWCTATNKQGRSSSQNVHISVTGA-------PFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ  152 (258)
Q Consensus        82 ~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~  152 (258)
                       . ..|+|.|+|.+.+..+... ..+.|.|...       |.+. .+....+..|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        71 -~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~  148 (212)
T 2yd6_A           71 -RTPRDEAIYECVASNNVGEIS-VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP  148 (212)
T ss_dssp             -CTTTTCEEEEEEEEETTEEEE-EEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEE
T ss_pred             -CCCCCCeEEEEEEEcCCCcEE-EEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCcc
Confidence             6 8999999999999887755 7778888754       2222 23445678899999999999999999999999987


Q ss_pred             cCCC---cceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        153 LPLN---RRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       153 ~~~~---~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      +...   .+.....   .+.|.|.++.. +|.|.|+|.|.|..|...+..+.|.+..++.
T Consensus       149 l~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          149 VDTSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             C------CCEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ccCcCCCceEEEEecCCeEEEEEcCCCc-ccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            7643   2222222   36799999997 9999999999999998778888898887764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.96  E-value=5.7e-28  Score=174.17  Aligned_cols=198  Identities=18%  Similarity=0.291  Sum_probs=144.7

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceec-ccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +...+.+..+.+|++++|.|...+.+.+.+.|++++........ ..+.. .........+..+..+..+++|.|.++ +
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v-~   79 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEI-ARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI-T   79 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEE-EEEEGGGTEEEECTTCCSSEEECTTSCEEECSC-C
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceE-EEEecCCCccccCccccceeEEecCCeEEEccc-c
Confidence            45566678899999999999977777889999987543222100 01110 111122233445556667789999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecC---CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                      ..|+|.|+|.+.+..+......+.|.|..+   +.+...... +..|+.+.|.|.+.+.| +.+.|++++..+....+..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~  157 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMT  157 (208)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEE
T ss_pred             ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeE
Confidence            999999999999986544447778888755   333333333 88999999999998865 7999999999887776666


Q ss_pred             EecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        161 VFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       161 ~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                      +... +.|.|.++.. +|.|.|+|.|.|..+...+..+.|.|..+|..
T Consensus       158 ~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          158 LSQNNSILRIDPIKR-EDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EETTTTEEEESSCCG-GGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             EcCCCCEEEEeccCH-HhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            6544 7899999997 99999999999999988899999999887754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=200.43  Aligned_cols=211  Identities=16%  Similarity=0.219  Sum_probs=152.9

Q ss_pred             eecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532         13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC   92 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C   92 (258)
                      ....|+.+.|.|.+.|.|.|.+.|++++..+....   ....                 .........+ ...|+|.|+|
T Consensus       150 ~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~---~~~~-----------------~~~~~~~~~~-~~~d~G~Y~C  208 (527)
T 3qs9_E          150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESP-----------------AVVKKEEKVL-HELFGTDIRC  208 (527)
T ss_dssp             EEECSSSSCEEEEEEESSCCEEEEEEC---------------------------------CEEECCSEE-CCCCSSCEEE
T ss_pred             EEecCCceEEEEEEceecCCeEEEEECCCCCcccc---ccCC-----------------cEEEEeeeec-cccCCEEEEE
Confidence            34568888999999999999999999876543210   0000                 0001112334 6789999999


Q ss_pred             EEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcceE---------Ee
Q psy14532         93 TATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQK---------VF  162 (258)
Q Consensus        93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~---------~~  162 (258)
                      .+.|..|......+.|.|...+.. .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.......         ..
T Consensus       209 ~A~N~~G~~~~~~~~l~V~~~p~~-~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~  287 (527)
T 3qs9_E          209 CARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI  287 (527)
T ss_dssp             EEECSSCEEEEECEEEESSSCCCC-SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEE
T ss_pred             EEEeCCCcccceEEEEEEeccCcc-CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCccee
Confidence            999998877655577888766654 44567788999999999996 88999999999998776543221         12


Q ss_pred             cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC--CCCccCCCCeeeEEEEeccCCCCceeEEE
Q psy14532        163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE--FQPDLHSGDRAGVQCLVTKGDPPLTISWL  240 (258)
Q Consensus       163 ~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  240 (258)
                      ..++|.|.++.. +|+|.|+|.|.|.    .+..+.|.|..+|.+...+  ....+.+|+.+.|.|.+ .+.|.+.|.|+
T Consensus       288 ~~~~L~I~~v~~-~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~  361 (527)
T 3qs9_E          288 RILFAFVSSVAR-NDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWT  361 (527)
T ss_dssp             EEEEEEESSCCG-GGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEE-EEESCCEEEEE
T ss_pred             eEEEEEEccCCc-ccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEE-EecCCCEEEEE
Confidence            234699999997 9999999999987    4567788888877655433  23567889999999999 68999999999


Q ss_pred             ECCEecccccc
Q psy14532        241 KNGLPILSAMG  251 (258)
Q Consensus       241 ~~g~~l~~~~~  251 (258)
                      ++|+.|..+..
T Consensus       362 k~g~~l~~~~~  372 (527)
T 3qs9_E          362 FSRKSFPCEQK  372 (527)
T ss_dssp             ETTEEEECBCC
T ss_pred             ECCEECcCCcc
Confidence            99999976553

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.96  E-value=8.8e-29  Score=193.22  Aligned_cols=193  Identities=17%  Similarity=0.155  Sum_probs=150.3

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      ..+.+|++++|.|.+.+.|.+.+.|++++..+                          ....++|.|.++ +.+|+|.|+
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------------------~~~~~~L~i~~v-~~~d~G~Y~  158 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------------IQGGKTLSVSQL-ELQDSGTWT  158 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------------------EEESSEEEECSB-CGGGCEECE
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------------------cccceEEEEeeC-ChhcCCEEE
Confidence            46789999999999988888999999986432                          123568999999 999999999


Q ss_pred             EEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-----ccCceEEEEeCCcccCC--------Ccc
Q psy14532         92 CTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQLPL--------NRR  158 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~--------~~~  158 (258)
                      |.+.+..+... ..+.|.|..++...  ....+.+|+.+.|.|.+.+     .|.+.+.|++++..+..        ...
T Consensus       159 C~a~~~~~~~~-~~~~l~v~~~p~~~--~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~  235 (363)
T 1wio_A          159 CTVLQNQKKVE-FKIDIVVLAFQKAS--SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE  235 (363)
T ss_dssp             EEEEETTEEEE-ECCEECEECCSCSE--EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSC
T ss_pred             EEEecCCCeEE-EEEEEEEecCCCCC--CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCe
Confidence            99998755444 55667776554322  4456788999999998876     77889999999987665        333


Q ss_pred             eEEe-----------c--CCeEEEEecccCCCCcEEEEEEEeC--CCCCccceEEEEeecCCccccCCCCCccCCCCeee
Q psy14532        159 QKVF-----------P--NGTLLIENVQKDHDRGVYWCTATNK--QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG  223 (258)
Q Consensus       159 ~~~~-----------~--~~~l~i~~~~~~~~~g~y~C~~~~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~  223 (258)
                      ..+.           .  ...|.|.++.. +|+|.|+|.|.|.  .+ ..+..+.|.|..             ..|+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~g-~~~~~~~l~V~~-------------v~g~~~~  300 (363)
T 1wio_A          236 VSVKRVTQDPKLQMGKKLPLHLTLPQALP-QYAGSGNLTLALEAKTG-KLHQEVNLVVMR-------------ATQLQKN  300 (363)
T ss_dssp             EEEEEEECSSCCBCCSSSSCEEEESSBCG-GGCEEEEEEECBTTTTC-CEEEEEEEEEEE-------------ECCCSSS
T ss_pred             eeccccccchhhhcccCCceEEEEccCCc-CcCcEEEEEEEEhhhcC-eEEEEEeEEEEE-------------ecCCCee
Confidence            3331           2  33899999997 9999999999999  77 456667777761             1188999


Q ss_pred             EEEEeccCCCCce--eEEEECCEeccccc
Q psy14532        224 VQCLVTKGDPPLT--ISWLKNGLPILSAM  250 (258)
Q Consensus       224 l~C~~~~~~p~~~--~~W~~~g~~l~~~~  250 (258)
                      |.|.+ .+.|.+.  +.|+++|+.+..+.
T Consensus       301 l~C~~-~g~p~p~~~i~W~~~~~~~~~~~  328 (363)
T 1wio_A          301 LTCEV-WGPTSPKLMLSLKLENKEAKVSK  328 (363)
T ss_dssp             EEEEE-ESSCCTTCCEEEECSSSSCSEEE
T ss_pred             EEEEE-ccccCCCccEEEEeCCCceeeee
Confidence            99999 5777777  99999999887544

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.96  E-value=1.6e-28  Score=177.55  Aligned_cols=194  Identities=27%  Similarity=0.505  Sum_probs=143.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC-----cE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-----TL   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l   76 (258)
                      ||.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+..........              .....++     .|
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l   74 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH--------------RMLLPSGSLFFLRI   74 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCS--------------EEECTTSCEEESSC
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccc--------------eEEecCCcEEEEEE
Confidence            6888888999999999999999999988889999999998876442111100              0111122     34


Q ss_pred             EEeecccCCCceEEEEEEEeCCcceeeceEEEEEecC--CeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCccc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA--PFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQL  153 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~  153 (258)
                      .|.++ +..|+|.|+|.+.+..+...+..+.|.|...  .....+....+..|+.+.|.|.+ .+.|.+.+.|++++..+
T Consensus        75 ~i~~~-~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l  153 (212)
T 2v9r_A           75 VHGRK-SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL  153 (212)
T ss_dssp             CCCSS-CCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEE
T ss_pred             EecCC-CcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccC
Confidence            55677 8899999999999987765445666776543  23333455678899999999998 88899999999999887


Q ss_pred             CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC
Q psy14532        154 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE  211 (258)
Q Consensus       154 ~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~  211 (258)
                      ..........++.|.|.++.. +|.|.|+|.+.|..+...+..+.|.|..+|.+...|
T Consensus       154 ~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          154 DDKDERITIRGGKLMITYTRK-SDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             CTTSTTEEEETTEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             CCCcceEEccCCeEEEeeCCH-hhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            755444445677899999997 999999999999988655667899999888766543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=169.76  Aligned_cols=188  Identities=20%  Similarity=0.319  Sum_probs=142.8

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      .+|.|...+.+..+.+|++++|.|.+. +.|.+.+.|+|++..+..... .+..+.      ...........+++|.|.
T Consensus         1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~-~~~~~~------~~~~~~~~~~~~~~L~i~   73 (195)
T 2c5d_C            1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADS-TQTQVP------LGEDEQDDWIVVSQLRIT   73 (195)
T ss_dssp             -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEE-EEEEEE------CSSSTTSEEEEEEEEEES
T ss_pred             CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCC-CceEEE------EccccccceeeccEEEEE
Confidence            378999999999999999999999999 888899999999988765411 011100      000000011114579999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNR  157 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~  157 (258)
                      ++ +..|+|.|+|.+.+..+...+..+.|.|..+|.+.. +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....
T Consensus        74 ~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~  152 (195)
T 2c5d_C           74 SL-QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP  152 (195)
T ss_dssp             SC-CSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSST
T ss_pred             ec-cccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCC
Confidence            99 999999999999998776655668899988775543 445678889999999999999989 999999998876554


Q ss_pred             ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       158 ~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ..  ...+.|.|.++.   |+|.|+|.|.|..|...+..+.|.|
T Consensus       153 ~~--~~~~~L~i~~~~---d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          153 GH--GPQRSLHVPGLN---KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             TS--SCCEEEEECCCS---SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             Cc--CCCCeEEEcccc---cCceEEEEEEcCCCceEEEEEEEEE
Confidence            33  355678888764   6899999999998855557777777

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=1.3e-28  Score=189.80  Aligned_cols=237  Identities=15%  Similarity=0.241  Sum_probs=157.0

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec----CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceee----ee
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN----PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKV----FP   72 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   72 (258)
                      +.+...+.++.+.+|++++|.|.+.+.    +.+.+.|++++  ......    .+...........+..+..+    ..
T Consensus        15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~----~~~~~~~~~~~~~~~~r~~~~~~~~~   90 (331)
T 3u83_A           15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA----IYNPSMGVSVLAPYRERVEFLRPSFT   90 (331)
T ss_dssp             ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEE----EEETTTEEEECTTCTTTEEESSCSSS
T ss_pred             cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEE----EEeccCCCCcCcccCCceEecccCCC
Confidence            344667788899999999999998765    44579999953  211000    00000000001111222221    23


Q ss_pred             CCcEEEeecccCCCceEEEEEEEe-CCcceeeceEEEEEecCCeec---cCCCcceecC---CcEEEEee-eCcccCceE
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATN-KQGRSSSQNVHISVTGAPFVR---PMGNVSAIAG---EPLYLGCP-VAGYPIESI  144 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~~~~~~---~~~~~~~~~g---~~~~l~C~-~~~~~~~~i  144 (258)
                      +++|.|.++ +..|+|.|+|.+.+ ..+... ..+.|.|..+|...   ......+.+|   +.+.|.|. +.+.|.+.+
T Consensus        91 ~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i  168 (331)
T 3u83_A           91 DGTIRLSRL-ELEDEGVYICEFATFPTGNRE-SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVV  168 (331)
T ss_dssp             BCCEEECSC-CGGGCEEEEEEEEEETTEEEE-EEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEE
T ss_pred             CceEEEccc-CcccCcEEEEEEEecCCCccE-EEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceE
Confidence            578999999 99999999998554 444444 78888998877542   2445567777   77999998 778899999


Q ss_pred             EEEeCCcccCCCcceEEecC------CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC-CCCccC
Q psy14532        145 TWQKGVQQLPLNRRQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE-FQPDLH  217 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~  217 (258)
                      .|++++....... .....+      ..|.|.++.. +|+|.|+|.+.|..+ ..+..+.|.|..+|.+...+ ....+.
T Consensus       169 ~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~-~~~~~~~l~V~~~P~~~~~~~~~~~~~  245 (331)
T 3u83_A          169 SWETRLKGEAEYQ-EIRNPNGTVTVISRYRLVPSRE-AHQQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYL  245 (331)
T ss_dssp             EEEESSCCEEEEE-EEECTTSCEEEEEEEEECCCGG-GTTCEEEEEEEETTE-EEEEEEECCEEEEEEEEEECCCSCCBT
T ss_pred             EEEcCCCCccccc-eeECCCCcEEEEEEEEEEeccc-cCCCEEEEEEecCCC-cceeeEEEEEecCCeEEEecCCCceEe
Confidence            9999643322111 111122      3466666676 999999999999876 35577778888777765433 344588


Q ss_pred             CCCeeeEEEEeccCCCCce-eEEEECCEecccc
Q psy14532        218 SGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSA  249 (258)
Q Consensus       218 ~g~~~~l~C~~~~~~p~~~-~~W~~~g~~l~~~  249 (258)
                      .|+.+.|.|.+ .+.|.+. +.|+++|..+...
T Consensus       246 ~g~~~~l~C~~-~g~p~p~~i~W~~~~~~~~~~  277 (331)
T 3u83_A          246 QRMDVKLTCKA-DANPPATEYHWTTLNGSLPKG  277 (331)
T ss_dssp             TCCCEEEEEEE-EEESCCCEEEEEETTBSCCTT
T ss_pred             CCCeEEEEEeC-cCCCCCCEEEEEECCCccccc
Confidence            89999999999 6888887 9999999988654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=4.6e-27  Score=179.19  Aligned_cols=189  Identities=29%  Similarity=0.432  Sum_probs=146.4

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+....  .++.+.            .......+|.|.+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~------------~~~~~~~~L~i~~   68 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQ------------EFKGGYHQLIIAS   68 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS--SSEEEE------------EETTTEEEEEESS
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC--CeEEEE------------ECCCCEEEEEEcc
Confidence            37999999999999999999999999998889999999998776431  111110            0000123799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc------CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP------MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~------~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                      + +.+|+|.|+|.+.+..+... ..+.|.|..++.+..      .....+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        69 v-~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~  146 (305)
T 2nzi_A           69 V-TDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID  146 (305)
T ss_dssp             C-CGGGCSEEEEEEEETTEEEE-EEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC
T ss_pred             C-ChhhCeEEEEEEEcCCCCcc-ceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECC
Confidence            9 99999999999999887655 778888876554332      244567889999999999999999999999998887


Q ss_pred             CCcceEEe---cCCeEEEEe-cccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        155 LNRRQKVF---PNGTLLIEN-VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       155 ~~~~~~~~---~~~~l~i~~-~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                      ...++.+.   ....|.|.+ +.. +|.|.|+|.+.|..+. ....+.|.|..+|..
T Consensus       147 ~~~~~~~~~~~~~~~l~i~~~~~~-~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~  201 (305)
T 2nzi_A          147 NNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGI-DQKTVELDVADVPDP  201 (305)
T ss_dssp             SSSSCEEEECSSEEEEEETTCCCS-TTCEEEEEEEEETTEE-EEEEEEEEEEBCCCC
T ss_pred             CCCcEEEEEcCCceEEEEecCCcc-CccEEEEEEEEeCCCc-eeeEEEEEEecCCCC
Confidence            66555543   234688888 887 9999999999999884 556777888776643

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=5e-28  Score=185.01  Aligned_cols=217  Identities=14%  Similarity=0.196  Sum_probs=153.9

Q ss_pred             ceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          9 FIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ...+.+.+|+.+.|.|... +.|.+.+.|+|++..+...   .++.+..             .....+|.|.++ +.+|+
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~---~~~~~~~-------------~~~~~~L~I~~~-~~~D~   70 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDS---PRLEVES-------------KGNKTKMTFKDL-GMDDL   70 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTC---TTEEEEE-------------ETTEEEEEESSC-CGGGC
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCC---CCEEEEE-------------eCCEEEEEECcC-CccCC
Confidence            3456788999999999876 4688899999999987644   2222210             001247999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEec------------CCeecc-C-CCcceecCCcEEEEeeeC-cccCceEEEEeCCcc
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTG------------APFVRP-M-GNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQ  152 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~------------~~~~~~-~-~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~  152 (258)
                      |.|+|.+.+..+...  .+.+.|..            .|.+.. . ....+.+|+.+.|.|.+. +.|.+.+.|++++..
T Consensus        71 G~Y~C~~~n~~g~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~  148 (312)
T 2y23_A           71 GIYSCDVTDTDGIAS--SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE  148 (312)
T ss_dssp             EEEEEEESSSCCCCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEE
T ss_pred             EEEEEEEEeCCCcEE--EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEE
Confidence            999999999877443  34455542            332221 2 256778899999999998 789999999999988


Q ss_pred             cCCCcceEEecC---C--eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee---------------------cCCc
Q psy14532        153 LPLNRRQKVFPN---G--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------------------VPPK  206 (258)
Q Consensus       153 ~~~~~~~~~~~~---~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~---------------------~~p~  206 (258)
                      +....++.+..+   +  .|.|.++.. +|+|.|+|.+.+...   .....+.+.                     .+|.
T Consensus       149 i~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  224 (312)
T 2y23_A          149 IFEGPKYKMHIDRNTGIIEMFMEKLQD-EDEGTYTFQLQDGKA---TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH  224 (312)
T ss_dssp             ECSSSSCEEEEETTTTEEEEEESCCCG-GGCEEEEEEEESSSC---EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSE
T ss_pred             CeeCCcEEEEEccCCCEEEEEEccCCc-ccCEeEEEEEEeCCc---eEEEEEEEcchhhhhhcccccccccchhhccCCc
Confidence            877665554432   2  399999997 999999999986533   222233331                     1122


Q ss_pred             cccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccccc
Q psy14532        207 IAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSAM  250 (258)
Q Consensus       207 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~~  250 (258)
                      +.... ...+..|+.+.|.|.+ .+.|.+ .+.|+++|+.+..+.
T Consensus       225 ~~~~~-~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~g~~~~~~~  267 (312)
T 2y23_A          225 FVEYL-SWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISVDE  267 (312)
T ss_dssp             EEEEE-EEEEETTTEEEEEEEE-ESCCSSCEEEEEETTEEEEEEC
T ss_pred             eeecc-eEEEeCCCEEEEEEEE-cCCCCCCEEEEeeCCEECCCCC
Confidence            22111 2467899999999999 577776 999999999998544

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.96  E-value=8.4e-28  Score=171.82  Aligned_cols=182  Identities=30%  Similarity=0.461  Sum_probs=141.6

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC--CcEEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN--GTLLI   78 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i   78 (258)
                      .||.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+....  .++.+.              ...+  .+|.|
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~--------------~~~~~~~~L~i   66 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQ--------------EFKGGYHQLII   66 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCS--SSEEEE--------------EETTTEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCC--CcEEEE--------------EcCCCEEEEEE
Confidence            47899999999999999999999999998889999999998876431  111111              0112  27999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccC------CCcceecCCcEEEEeeeCcccCceEEEEeCCcc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM------GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ  152 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~------~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~  152 (258)
                      .++ +..|+|.|+|.+.+..+... ..+.|.|..++.+..+      ....+..|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        67 ~~~-~~~d~G~Y~C~~~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~  144 (197)
T 2j8h_A           67 ASV-TDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL  144 (197)
T ss_dssp             CSC-CGGGCSEEEEEEEETTEEEE-EEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCE
T ss_pred             CcC-CHHhCEEEEEEEEECCCcee-EEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEE
Confidence            999 99999999999999877655 7778888766544322      234577899999999999999999999999988


Q ss_pred             cCCCcceEEec---CCeEEEEe-cccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        153 LPLNRRQKVFP---NGTLLIEN-VQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       153 ~~~~~~~~~~~---~~~l~i~~-~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +....++.+..   .+.|.|.+ +.. +|.|.|+|.|.|..+. .+..+.|.|.
T Consensus       145 ~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~  196 (197)
T 2j8h_A          145 IDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGI-DQKTVELDVA  196 (197)
T ss_dssp             ECSSSSCEEEECSSEEEEECTTCCCG-GGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             eecCCCEEEEEcCCceEEEEeCCCCc-ccCEeEEEEEEeCCCc-EeEEEEEEEe
Confidence            87665555432   34788888 887 9999999999999874 4566666654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=194.20  Aligned_cols=234  Identities=17%  Similarity=0.294  Sum_probs=155.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+...+....+.+|++++|.|.+.+.+.+  .+.|+|+|..+............          ..........|.|.
T Consensus       114 ~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~----------~~~~~~~~s~L~i~  183 (523)
T 2rcj_C          114 NPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQ----------SNNKYAASSYLSLT  183 (523)
T ss_pred             CCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEecccccc----------CCCCEEEEEEEEEe
Confidence            5666666666677889999999999987553  99999999877543110000000          00011112468999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE----ecCCeec-cCCCcceecCCcEEEEeeeCcc-cCc-eEEEEeCCcc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV----TGAPFVR-PMGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKGVQQ  152 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v----~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~~~~  152 (258)
                      ++ +.+|+|.|+|.+.+..+... ..+.+.+    ..+|.+. ......+.+|+.+.|.|.+.+. |.+ .+.|++++..
T Consensus       184 ~~-~~~d~G~Y~C~a~n~~~~~~-~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~  261 (523)
T 2rcj_C          184 PE-QWKSHRSYSCQVTHEGSTVE-KTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALT  261 (523)
T ss_pred             ch-hcCCCceEEEEEEecCcccc-cceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcc
Confidence            99 99999999999999876554 3343322    1233332 2233456789999999999886 767 8999999876


Q ss_pred             cCCCcce-EEec------CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccC-CCCCc-cCCCCeee
Q psy14532        153 LPLNRRQ-KVFP------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPF-EFQPD-LHSGDRAG  223 (258)
Q Consensus       153 ~~~~~~~-~~~~------~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~-~~~g~~~~  223 (258)
                      +...... ....      ...|.|.++.. +| |.|+|.|.|..+. ......|.+...|.+... +.... +.+|+.+.
T Consensus       262 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d-G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~  338 (523)
T 2rcj_C          262 SGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPSN-TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPE  338 (523)
T ss_pred             cceEeCCcEecCCCcEEEEEEEEechhhc-CC-ceEEEEEEeCCCC-cceEEecCCCcCceEEecCCCchhhcccCCceE
Confidence            5321111 1112      23789999987 88 9999999999874 334455555555544332 22233 78899999


Q ss_pred             EEEEeccCCCC---ceeEEEECCEeccccc
Q psy14532        224 VQCLVTKGDPP---LTISWLKNGLPILSAM  250 (258)
Q Consensus       224 l~C~~~~~~p~---~~~~W~~~g~~l~~~~  250 (258)
                      |.|.+.+..|.   +.|.|+++|+.+....
T Consensus       339 l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~  368 (523)
T 2rcj_C          339 VTCVVVDVSHEDPQVKFNWYVDGVQVHNAK  368 (523)
T ss_pred             EEEEEecccCCCCceEEEEEECCeEccCCc
Confidence            99999533333   6999999999987554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.96  E-value=1.2e-27  Score=170.57  Aligned_cols=182  Identities=21%  Similarity=0.354  Sum_probs=139.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+..... .+..+.             ......+|.|.++
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~-------------~~~~~~~L~i~~~   70 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL-PGVQIS-------------FSDGRAKLTIPAV   70 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTS-TTCEEE-------------EETTEEEEEESSC
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccC-CceEEE-------------eCCCEEEEEECCC
Confidence            68888888999999999999999999988889999999877654421 011110             0011347999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEec---CCee-ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFV-RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +..|+|.|+|.+.+..+... ..+.|.|..   +|.+ .......+..|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus        71 -~~~d~G~Y~C~~~n~~~~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~  148 (194)
T 2a38_A           71 -TKANSGRYSLKATNGSGQAT-STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL  148 (194)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSS
T ss_pred             -CcccCEEEEEEEEcCCceEe-EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCC
Confidence             99999999999999887665 666777763   3322 23445678899999999999999999999999998887666


Q ss_pred             ceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        158 RQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       158 ~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +..+..++   .|.|.++.. +|.|.|+|.|.|..+. ....+.|.|
T Consensus       149 ~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V  193 (194)
T 2a38_A          149 DFQISQEGDLYSLLIAEAYP-EDSGTYSVNATNSVGR-ATSTAELLV  193 (194)
T ss_dssp             SEEEEEETTEEEEEEEEECG-GGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             cEEEEEcCCEEEEEECCCCh-hcCeEEEEEEEeCCCc-eEEEEEEEE
Confidence            65554443   699999997 9999999999999874 445555554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.7e-27  Score=169.09  Aligned_cols=182  Identities=24%  Similarity=0.416  Sum_probs=137.0

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ++|.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+..... .                +.....+++|.|.+
T Consensus         1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~----------------~~~~~~~~~L~i~~   63 (189)
T 2v5t_A            1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-N----------------RFAMLANNNLQILN   63 (189)
T ss_dssp             CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCC-T----------------TEEECTTSCEEETT
T ss_pred             CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccC-C----------------eEEEecCCCEEEee
Confidence            589999999999999999999999999888889999999876643211 1                11223467899999


Q ss_pred             cccCCCceEEEEEEEeCCcce-eeceEEEEEecCCeeccCC---CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFVRPMG---NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN  156 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~  156 (258)
                      + +..|+|.|+|.+.+..+.. ....+.+.+..+|.+....   ...+..|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus        64 ~-~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~  142 (189)
T 2v5t_A           64 I-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  142 (189)
T ss_dssp             C-CGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCS
T ss_pred             C-CHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCC
Confidence            9 9999999999999876433 3355666666665443322   345668999999999999999999999999888766


Q ss_pred             cceEEec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        157 RRQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       157 ~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      ....... ++.|.|.++.. +|+|.|+|.|.|..+. ....+.|.|.
T Consensus       143 ~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~  187 (189)
T 2v5t_A          143 EKYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGE-DEKQAFLQVF  187 (189)
T ss_dssp             SSEEEETTTTEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             CcEEEecCCCEEEEcCCCh-hhCeeEEEEEEeCCCc-eeEEEEEEEE
Confidence            6555443 56799999997 9999999999999874 4455666654

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=4.8e-28  Score=194.25  Aligned_cols=214  Identities=16%  Similarity=0.174  Sum_probs=155.5

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeE-----EEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHI-----SWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|...|.+..+.+|++++|.|.+.+ |.+.+     .|+|++..+...                         ...+|.|
T Consensus         1 ~i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~-------------------------~~~~l~i   54 (450)
T 1z7z_I            1 QTSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGN-------------------------NRKVYEL   54 (450)
T ss_dssp             CCEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTT-------------------------TEEEEEE
T ss_pred             CcccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCC-------------------------CceEEEE
Confidence            3667888999999999999999998 78888     898876533211                         0126889


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec--cCCCcceecCCcEEEEeeeCcccCc---eEEEEeCCccc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR--PMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKGVQQL  153 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~---~i~W~~~~~~~  153 (258)
                      .++ +. |+| |+|.+.+..+... ..+.|.|..+|...  .+....+.+|+.+.|.|.+.+.+++   .+.|++++..+
T Consensus        55 ~~v-~~-d~g-Y~C~a~~~~~~~~-~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l  130 (450)
T 1z7z_I           55 SNV-QE-DSQ-PMCYSNCPDGQST-AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL  130 (450)
T ss_dssp             EEE-CS-CBC-CEEEEEETTEEEE-EECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEE
T ss_pred             Eec-cc-CCe-eEEEEeCCCCcce-eEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEe
Confidence            999 77 999 9999976544444 67788887766443  2444678899999999999988877   89999999876


Q ss_pred             CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc-------cceEEEEeecCCcccc-CCCCCccCCCCeeeEE
Q psy14532        154 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS-------SQNVHISVTVPPKIAP-FEFQPDLHSGDRAGVQ  225 (258)
Q Consensus       154 ~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~-------~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~  225 (258)
                      ..........++.|.|.++.. +|+|.|+|.+.|..+...       +....|.+...|...+ ......+.+|+.+.|.
T Consensus       131 ~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~  209 (450)
T 1z7z_I          131 KREPAVGEPAEVTTTVLVRRD-HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV  209 (450)
T ss_dssp             EEEECCTTTEEEEEEEECCSS-CSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEE
T ss_pred             ecccccccccceEEEEEeecc-ccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEE
Confidence            543221112235799988886 999999999999865321       2344455544322111 1122568899999999


Q ss_pred             EEeccCCC--CceeEEEECCEeccc
Q psy14532        226 CLVTKGDP--PLTISWLKNGLPILS  248 (258)
Q Consensus       226 C~~~~~~p--~~~~~W~~~g~~l~~  248 (258)
                      |.+.+..|  .+.+.|+++|+.+..
T Consensus       210 C~~~g~~P~~~~~~~W~~~~~~~~~  234 (450)
T 1z7z_I          210 CSLDGLFPVSEAQVHLALGDQRLNP  234 (450)
T ss_dssp             EEEESCTTGGGCEEEEEETTEECCC
T ss_pred             EEeeCCCCCCceEEEEeCCCEeCCc
Confidence            99954437  789999999998875

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.96  E-value=2.3e-27  Score=169.45  Aligned_cols=182  Identities=24%  Similarity=0.388  Sum_probs=140.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+...   .+..+..             .....+|.|.++
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~-------------~~~~~~L~i~~~   70 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS---RKYKMSS-------------DGRTHTLTVMTE   70 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC---SSEEEEE-------------SSSEEEEEEECC
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC---ccEEEEe-------------CCCEEEEEEecC
Confidence            688888889999999999999999998888899999998877543   1111110             001227999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc----CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP----MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +.+|+|.|+|.+.+..+... ..+.|.|...|....    .....+..|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus        71 -~~~d~G~Y~C~~~n~~~~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~  148 (197)
T 3lcy_A           71 -EQEDEGVYTCIATNEVGEVE-TSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE  148 (197)
T ss_dssp             -SGGGCEEEEEEEECSSCEEE-EEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS
T ss_pred             -CccCCEEEEEEEECCCCcee-EEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCC
Confidence             99999999999998877665 667777776554432    234467789999999999999999999999998887666


Q ss_pred             ceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        158 RQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       158 ~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +..+...   ..|.|.++...+|.|.|+|.|.|..+. .+..+.|.|.
T Consensus       149 ~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  195 (197)
T 3lcy_A          149 NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT-VDAILDVEIQ  195 (197)
T ss_dssp             SEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             ceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCc-eEEEEEEEEe
Confidence            6655444   568888887327999999999999884 4566666664

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=3.2e-28  Score=185.89  Aligned_cols=235  Identities=15%  Similarity=0.176  Sum_probs=156.1

Q ss_pred             eeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeecccC
Q psy14532         10 IQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQKD   84 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~   84 (258)
                      .++.+.+|++++|.|.+.+. +.+.+.|+|++.......  ..+...........+..|..    ...+++|.|.++ +.
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~   83 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTV--AVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNI-GF   83 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEE--EEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSC-CG
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceE--EEecCCCCceecCcccceEEeeccCCCceEEEEccC-CH
Confidence            35778899999999998654 445799998643221100  00000000000111111111    123568999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCCee---ccCCCcceecCCcEEEEeee-CcccCceEEEEeCCcccCCCcceE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAPFV---RPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                      +|+|.|+|.+.+.........+.+.+...+..   ..+.......|+.+.|.|.+ .+.|.+.+.|++++..+.......
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~  163 (308)
T 4fom_A           84 SDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF  163 (308)
T ss_dssp             GGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC
T ss_pred             HHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccccee
Confidence            99999999999875544446677777665532   22344455678899999986 578999999999988775432211


Q ss_pred             ----EecCCeEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEEEeecCCccccCCC-CCccCCCCeeeEEEEeccCCCC
Q psy14532        161 ----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEF-QPDLHSGDRAGVQCLVTKGDPP  234 (258)
Q Consensus       161 ----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~  234 (258)
                          ....+.|.|..+.. +|+|.|+|.|.|..+.. .+..+.|.|..+|.+...+. ...+..|+.++|.|.+ .+.|.
T Consensus       164 ~~~~~~~~s~l~i~~~~~-~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~  241 (308)
T 4fom_A          164 PNETATIISQYKLFPTRF-ARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNA-DANPP  241 (308)
T ss_dssp             TTSCEEEEEEEEECCCGG-GTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCE-EEESC
T ss_pred             eeecccccccceEEeeee-cCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEE-ecCCC
Confidence                11123588888886 99999999999987543 34556677777777655443 3456778999999999 57777


Q ss_pred             c-eeEEEECCEecccc
Q psy14532        235 L-TISWLKNGLPILSA  249 (258)
Q Consensus       235 ~-~~~W~~~g~~l~~~  249 (258)
                      + .+.|+++|..+..+
T Consensus       242 p~~v~W~k~~~~~~~~  257 (308)
T 4fom_A          242 PFKSVWSRLDGQWPDG  257 (308)
T ss_dssp             EEEEECCBSSSCCCSS
T ss_pred             CcEEEEEECCeECCCc
Confidence            7 79999998887654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=2.3e-28  Score=190.92  Aligned_cols=211  Identities=18%  Similarity=0.193  Sum_probs=151.2

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee------eCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF------PNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~   84 (258)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..+...........     ....+..|..+.      .+.+|.|.++ +.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~~L~I~~v-~~   76 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK-----GPSKLNDRADSRRSLWDQGNFPLIIKNL-KI   76 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEE-----CSSTTGGGEECCHHHHHTTCCCEEECSC-CG
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEec-----CCcccccceeeeeccccCCeEEEEECCC-CH
Confidence            46788999999999998888899999998753211100000000     001111222211      2567999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN  164 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  164 (258)
                      +|+|.|+|.+.+..     ..+.|.|...   ...+...+.+|+.+.|.|.+.+.|.+.+.|++++..+       ....
T Consensus        77 ~D~G~Y~C~~~n~~-----~~~~l~V~~~---~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-------~~~~  141 (363)
T 1wio_A           77 EDSDTYICEVEDQK-----EEVQLLVFGL---TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGG  141 (363)
T ss_dssp             GGCEEEEEEETTEE-----EEEEEEEEEE---EESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCE-------EEES
T ss_pred             HHCEEEEEEEEECC-----CcEEEEEEeC---CCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-------cccc
Confidence            99999999998774     2455666542   2223346789999999999988899999999987653       2356


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccC-----CCCceeEE
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG-----DPPLTISW  239 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W  239 (258)
                      ..|.|.++.. +|+|.|+|.+.+..+ .....+.|.|...|...   ....+.+|+.+.|.|.+. +     .|.+.+.|
T Consensus       142 ~~L~i~~v~~-~d~G~Y~C~a~~~~~-~~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~-~~~~~~~P~p~i~W  215 (363)
T 1wio_A          142 KTLSVSQLEL-QDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLA-FTVEKLTGSGELWW  215 (363)
T ss_dssp             SEEEECSBCG-GGCEECEEEEEETTE-EEEECCEECEECCSCSE---EEEEEETBCCEEEECCCC-CCCCSSCEEEEEEE
T ss_pred             eEEEEeeCCh-hcCCEEEEEEecCCC-eEEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEe-cccccCCCceeEEE
Confidence            7899999997 999999999998744 33455566666555432   345678899999999884 5     77899999


Q ss_pred             EECCEeccc
Q psy14532        240 LKNGLPILS  248 (258)
Q Consensus       240 ~~~g~~l~~  248 (258)
                      +++|..+..
T Consensus       216 ~~~g~~~~~  224 (363)
T 1wio_A          216 QAERASSSK  224 (363)
T ss_dssp             EESSCCCCC
T ss_pred             ecCCCCccc
Confidence            999988876

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.95  E-value=3.9e-27  Score=167.56  Aligned_cols=174  Identities=22%  Similarity=0.315  Sum_probs=136.3

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecC-CCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .|+++...+.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+....  .++.+.            ......++|.|
T Consensus         1 rp~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~--~~~~~~------------~~~~~~~~L~i   66 (191)
T 1epf_A            1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ--QRISVV------------WNDDDSSTLTI   66 (191)
T ss_dssp             --CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS--SSEEEE------------EEETTEEEEEE
T ss_pred             CceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCC--CeEEEE------------ECCCCceEEEE
Confidence            378899999999999999999999998875 78999999 777665321  111110            00112457999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC--
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--  155 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~--  155 (258)
                      .++ +..|+|.|+|.+.+..+......+.|.|..++.+.. +....+..|+.+.|.|.+.+.|.+.+.|++++..+..  
T Consensus        67 ~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~  145 (191)
T 1epf_A           67 YNA-NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK  145 (191)
T ss_dssp             CSC-CGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC
T ss_pred             ccC-CcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccC
Confidence            999 999999999999998855555888888887775543 4456788999999999999999999999999987753  


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..++....++.|.|.++.. +|+|.|+|.|.|..+
T Consensus       146 ~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          146 DVRFIVLSNNYLQIRGIKK-TDEGTYRCEGRILAR  179 (191)
T ss_dssp             CTTEEECTTSCEEETTCCG-GGCEEEEEEEEEGGG
T ss_pred             CceEEEecCCeEEECCCCh-hhCEEEEEEEEEecc
Confidence            2355556677899999997 999999999999764

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.95  E-value=7e-27  Score=169.56  Aligned_cols=184  Identities=28%  Similarity=0.543  Sum_probs=139.4

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc----E
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT----L   76 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l   76 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+.........                ....++.    |
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~----------------~~~~~~~~~~~l   71 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR----------------VQFKDGALFFYR   71 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSE----------------EECTTSCEEESS
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCcccee----------------EEecCCceEEEE
Confidence            3789999999999999999999999998888999999999887654111100                0111223    3


Q ss_pred             EEeecccCCCceEEEEEEEeCCcceeeceEEEEEec--CCeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCccc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG--APFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQL  153 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~  153 (258)
                      .|.++ +..|+|.|+|.+.+..+...+..+.|.|..  +.....+....+..|+.+.|.|.+ .+.|.+.+.|++++..+
T Consensus        72 ~i~~v-~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~  150 (217)
T 2vr9_A           72 TMQGK-KEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPL  150 (217)
T ss_dssp             CCBSS-SCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEE
T ss_pred             EeccC-CcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCC
Confidence            57888 899999999999998876644555666653  333334556678899999999999 88999999999998877


Q ss_pred             C--------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        154 P--------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       154 ~--------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      .        ...+.....++.|.|.++.. +|.|.|+|.|.|..|...+....|.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          151 DDLKAMSFGASSRVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             CCCCCC---CCCSEEEETTTEEEESSCCS-TTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CcccccccccCCcEEecCCCcEEEeeCCH-HHCeEEEEEEEcccceeccccEEEEEE
Confidence            6        33445555677899999997 999999999999988655554544443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.95  E-value=5.9e-27  Score=170.10  Aligned_cols=172  Identities=23%  Similarity=0.380  Sum_probs=139.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .++|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+...                         ..++|.|.++
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-------------------------~~~~L~i~~v   72 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-------------------------NTSELIFNAV   72 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-------------------------CSSEEEETTC
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-------------------------CCCEEEEccC
Confidence            467888999999999999999999998888899999998876543                         2457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCC---------------eec-cCCCcceecCCcEEEEeeeCcccCceEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP---------------FVR-PMGNVSAIAGEPLYLGCPVAGYPIESIT  145 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---------------~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~  145 (258)
                       +..|+|.|+|.+.+..+...+..+.|.|...+               .+. .+....+..|+.+.|.|.+.+.|.+.+.
T Consensus        73 -~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~  151 (218)
T 3k0w_A           73 -HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQ  151 (218)
T ss_dssp             -CGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEE
T ss_pred             -ChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEE
Confidence             99999999999999877665577888887552               221 2344678889999999999999999999


Q ss_pred             EEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        146 WQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       146 W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      |++++..+...      ....|.|.++.. +|.|.|+|.+.|..+...+..+.|.|...+.
T Consensus       152 W~~~~~~~~~~------~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~  205 (218)
T 3k0w_A          152 WFKNELPLTHE------TKKLYMVPYVDL-EHQGTYWCHVYNDRDSQDSKKVEIIIDELNN  205 (218)
T ss_dssp             EEETTEECTTC------CSSEEEESSCCG-GGCEEEEEEEECSSCEEECCCEEEEECC---
T ss_pred             EEECCEECCCC------CCCEEEEeecCh-hcCEEEEEEEEcCCCCceeeeEEEEEeCCcc
Confidence            99999877644      235799999997 9999999999998886677888888876443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.95  E-value=4.9e-27  Score=164.74  Aligned_cols=166  Identities=17%  Similarity=0.268  Sum_probs=132.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+....+.+|++++|.|.+.+.+.+. +.|+|++..+...                          +++|.|.+
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~--------------------------~~~L~i~~   60 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------------------------ASSYFIDA   60 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS--------------------------CSEEEESS
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC--------------------------ceEEEEeC
Confidence            57788888888899999999999998877665 8899998766432                          56899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~~~  159 (258)
                      + +.+|+|.|+|.+.+..+   +..+.|.|..++.........+.+|+.+.|.|.+.+.++ +.+.|++++..+..    
T Consensus        61 ~-~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----  132 (175)
T 1fnl_A           61 A-TVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----  132 (175)
T ss_dssp             C-CGGGCEEEEEECSSSCC---CCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----
T ss_pred             C-CcccCEEEEEEeeCCcc---cccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----
Confidence            9 99999999999987543   256777887665544445567889999999999987654 59999999887632    


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                       ......|.|.++.. +|+|.|+|.|.|..+...+..+.|.|..
T Consensus       133 -~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          133 -FHHNSDFHIPKATL-KDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             -EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -CCCCCEEEEcccCh-hhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence             23467899999997 9999999999997665566777777764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.95  E-value=1.7e-26  Score=164.15  Aligned_cols=174  Identities=25%  Similarity=0.365  Sum_probs=133.2

Q ss_pred             CCcceeeceeeeecC-CCceEEEEEEeecCC--CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQP-GPPVSLKCIATGNPT--PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ||.|...+ ...+.+ |++++|.|.+.+.+.  +.+.|+|++..+......                     ..+++|.|
T Consensus         3 ~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~---------------------~~~~~L~i   60 (190)
T 2wv3_A            3 EPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN---------------------ASNMEYRI   60 (190)
T ss_dssp             CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC---------------------CSEEEEEE
T ss_pred             CCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE---------------------eccEEEEE
Confidence            67887644 455556 999999999998876  789999999877644110                     12468999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEe--CCcccC-
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQK--GVQQLP-  154 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~--~~~~~~-  154 (258)
                      .++ +.+|+|.|+|.+.+. +... ..+.|.|..+|.+.. .....+..|+.+.|.|.+.+.|.+.+.|++  ++..+. 
T Consensus        61 ~~~-~~~d~G~Y~C~~~n~-~~~~-~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~  137 (190)
T 2wv3_A           61 NKP-RAEDSGEYHCVYHFV-SAPK-ANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI  137 (190)
T ss_dssp             SSC-CGGGCEEEEEEEEET-TEEE-EEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEEC
T ss_pred             ecC-CcccCEEEEEEEEeC-Cccc-ccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeee
Confidence            999 999999999999998 5554 788899988876553 445678899999999999999999999999  555443 


Q ss_pred             --CCcceEEecC---CeEEEEecc-cCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        155 --LNRRQKVFPN---GTLLIENVQ-KDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       155 --~~~~~~~~~~---~~l~i~~~~-~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                        ...++.+..+   +.|.|.++. . +|.|.|+|.|.|..+. ....+.|.|.
T Consensus       138 ~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~  189 (190)
T 2wv3_A          138 SNSSGRFFIINKENYTELNIVNLQIT-EDPGEYECNATNSIGS-ASVSTVLRVR  189 (190)
T ss_dssp             CCTTSCEEEEECSSEEEEEECSCCTT-TSCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             ecCCCeEEEecCCCeeEEEEEecccc-CCCEEEEEEEEecCCc-ceeEEEEEEE
Confidence              2334444333   269999998 6 9999999999999874 4455566554

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=1.9e-26  Score=181.57  Aligned_cols=224  Identities=25%  Similarity=0.373  Sum_probs=160.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCcc--ccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRH--ENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|.|.. +.+..+.+|++++|.|.+.+.|.+.+.|+|+  +..+.....  ..++.+.             ....+++|.
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~L~   66 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK-------------GQHGSSSLH   66 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEE-------------ECSSEEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEe-------------ccCCcceEE
Confidence            577776 6677888999999999999999999999998  777654211  0111111             001246899


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCc-ceecCCcEEEEeeeCcccCceEEEEeCCcccCCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV-SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN  156 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~  156 (258)
                      |.++ +.+|+|.|+|.+.|..|... ..+.|.|..+|.+...... .+..|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus        67 i~~v-~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~  144 (389)
T 2jll_A           67 IKDV-KLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAK  144 (389)
T ss_dssp             EESC-CGGGCEEEEEEEECSSCEEE-EEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCT
T ss_pred             Eccc-ChhhCEEEEEEEEeCCCCcc-eEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcc
Confidence            9999 99999999999999988775 8889999877766554333 5788999999999999999999999999887654


Q ss_pred             c--ceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEec--
Q psy14532        157 R--RQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT--  229 (258)
Q Consensus       157 ~--~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~--  229 (258)
                      .  +..+..   ...|.|.++.. +|.|.|+|.|.|..|. ....+.+.+...|..+... ......+..+.|.|...  
T Consensus       145 ~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~P~~~-~~~~~~~~~~~l~w~~p~~  221 (389)
T 2jll_A          145 NTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTATNHIGT-RFQEYILALADVPSSPYGV-KIIELSQTTAKVSFNKPDS  221 (389)
T ss_dssp             TCTTEEEEECSSCEEEEECCCST-TSSEEEEEEEEETTEE-EEEEEEEEECCCCCCCEEE-EEEEECSSCEEEEEECCSC
T ss_pred             cCceEEEeccCCEEEEEECCCCh-hhCEEEEEEEEcCCCc-EEEEEEEEecCCCCCCcce-EEeeccCCEEEEEEeCCCC
Confidence            3  333332   34699999997 9999999999999874 4455666665555432111 11223467889999852  


Q ss_pred             -cCCCCc--eeEEEECCE
Q psy14532        230 -KGDPPL--TISWLKNGL  244 (258)
Q Consensus       230 -~~~p~~--~~~W~~~g~  244 (258)
                       .+.|..  .+.|.+++.
T Consensus       222 ~~g~pi~~y~v~~~~~~~  239 (389)
T 2jll_A          222 HGGVPIHHYQVDVKEVAS  239 (389)
T ss_dssp             CTTSCEEEEEEEEEETTC
T ss_pred             CCCcceEEEEEEEEECCC
Confidence             222332  567887664

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.95  E-value=2.9e-27  Score=189.07  Aligned_cols=234  Identities=18%  Similarity=0.302  Sum_probs=152.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEee-cCCC-eEEEeeCCEeCcCCc-cccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDR-HENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.+...+....+.+|+.+.|.|.+.+ .|.+ .+.|+|+|..+.... .......          .........+.|.|
T Consensus       116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~L~i  185 (438)
T 1qgc_4          116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD----------SKDSTYSMSSTLTL  185 (438)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCC----------TTTCCEEEEEEEEE
T ss_pred             CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecccccc----------CCCCcEEEEEEEEE
Confidence            455554333334456889999999987 5666 899999998775431 0000000          00011112357999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEec-CCeeccCCCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG-APFVRPMGNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL  153 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~  153 (258)
                      .++ ..+|+|.|+|.+.+..+... ....+.+.. ...+..+....+.+|+.+.|.|.+.+.|  .+.+.|+++  +..+
T Consensus       186 ~~~-~~~d~G~Y~C~a~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~  263 (438)
T 1qgc_4          186 TKD-EYERHNSYTCEATHKTSTSP-IVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRL  263 (438)
T ss_dssp             EHH-HHHTCCEEEEEEEETTCSSC-EEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEE
T ss_pred             eCc-ccCCCCeEEEEEEecccCCc-eecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCc
Confidence            999 99999999999999876542 222222211 1223334556788999999999998877  679999996  4322


Q ss_pred             C-----------------CCcceEEec-----CCeEEEEecccCCCCcEEEEEEEeCCCC----CccceEEEEeec----
Q psy14532        154 P-----------------LNRRQKVFP-----NGTLLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTV----  203 (258)
Q Consensus       154 ~-----------------~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~----  203 (258)
                      .                 ...++.+..     ...|.|.++.. +|+|.|+|.|.|..+.    .......|.|..    
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~  342 (438)
T 1qgc_4          264 EWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS-ADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTT  342 (438)
T ss_dssp             EEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG-GGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCB
T ss_pred             EEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh-hhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCC
Confidence            1                 122333322     23799999997 9999999999984321    122345666653    


Q ss_pred             CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccc
Q psy14532        204 PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILS  248 (258)
Q Consensus       204 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~  248 (258)
                      +|.+...+....+..|+.++|.|.+.+.+|.+ .|.|+++|..+..
T Consensus       343 ~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~  388 (438)
T 1qgc_4          343 PPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGV  388 (438)
T ss_dssp             CCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSE
T ss_pred             CCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCce
Confidence            33333333344577899999999995334877 9999999988753

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=5.8e-27  Score=191.35  Aligned_cols=230  Identities=16%  Similarity=0.233  Sum_probs=149.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+........+.+|+.+.|.|.+.+. |.+ .|.|++++..+..... ......           ........+|.|.
T Consensus       219 ~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~-~~~~~~-----------~g~~~~~s~L~i~  286 (523)
T 2rcj_C          219 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTF-PAVLQS-----------SGLYSLSSVVTVP  286 (523)
T ss_pred             CCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeC-CcEecC-----------CCcEEEEEEEEec
Confidence            3444433334456899999999999886 767 8999999876432100 000000           0001123479999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec--cCCCcc-eecCCcEEEEeeeCcccC----ceEEEEeCCcc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR--PMGNVS-AIAGEPLYLGCPVAGYPI----ESITWQKGVQQ  152 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~-~~~g~~~~l~C~~~~~~~----~~i~W~~~~~~  152 (258)
                      ++ ...| |.|+|.+.|..+... ....|.+...|.+.  .+.... +.+|+.+.|.|.+.|.++    +.|.|++++..
T Consensus       287 ~~-~~~d-G~Y~C~a~n~~g~~~-~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~  363 (523)
T 2rcj_C          287 SS-SLGT-QTYICNVNHKPSNTK-VDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQ  363 (523)
T ss_pred             hh-hcCC-ceEEEEEEeCCCCcc-eEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeE
Confidence            99 8899 999999999988755 55555554444322  222233 678999999999988643    59999999987


Q ss_pred             cCCCcceE--EecC------CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE----eecCCccccCCCCCccCCCC
Q psy14532        153 LPLNRRQK--VFPN------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS----VTVPPKIAPFEFQPDLHSGD  220 (258)
Q Consensus       153 ~~~~~~~~--~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~  220 (258)
                      +.......  ...+      +.|.|.++.. +|+|.|+|.|.|..+.. .....+.    +..+|.+...+.......|+
T Consensus       364 l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~  441 (523)
T 2rcj_C          364 VHNAKTKPREQQYNSTYRVVSVLTVLHQNW-LDGKEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSREEMTKN  441 (523)
T ss_pred             ccCCccCCceecCCCcEEEEEEEEECHHHh-cCCCeEEEEEeCCCCCC-ceeEEEEcccCCCCCCEEEEeCCChHHccCC
Confidence            75443211  1122      2477777776 89999999999876532 2223333    34556555443332223344


Q ss_pred             eeeEEEEeccCCCC--ceeEEEECCEecccc
Q psy14532        221 RAGVQCLVTKGDPP--LTISWLKNGLPILSA  249 (258)
Q Consensus       221 ~~~l~C~~~~~~p~--~~~~W~~~g~~l~~~  249 (258)
                      .+.|.|.+. +.|+  ..|.|++||+.+...
T Consensus       442 ~~~l~C~~~-g~~p~~~~v~W~k~g~~~~~~  471 (523)
T 2rcj_C          442 QVSLTCLVK-GFYPSDIAVEWESNGQPENNY  471 (523)
T ss_pred             ceEEEEEEE-eeECCCCEEEEEECCEECCCe
Confidence            599999995 5433  499999999999743

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=5.5e-27  Score=175.28  Aligned_cols=198  Identities=17%  Similarity=0.255  Sum_probs=146.1

Q ss_pred             eeeecCCCceEEEEEEee-cCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe---ecccC
Q psy14532         11 QQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE---NVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~   84 (258)
                      +..+.+|++++|.|.+.+ .|.+  .+.|+|++..+...     .                 ......+.+.   ++ +.
T Consensus        12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~-----~-----------------~~~~~~~~~~~~~~~-~~   68 (265)
T 2oz4_A           12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-----V-----------------TYGNDSFSAKASVSV-TA   68 (265)
T ss_dssp             CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE-----E-----------------EECSSEEEEEEEEEE-CG
T ss_pred             CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce-----E-----------------eeCCCeEEEEeeccc-cc
Confidence            347889999999999998 6766  99999999877542     0                 0112233332   34 55


Q ss_pred             CCce--EEEEEEEeCCcceeeceEEEEEecC--CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE
Q psy14532         85 HDRG--VYWCTATNKQGRSSSQNVHISVTGA--PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        85 ~d~G--~Y~C~~~~~~~~~~~~~~~l~v~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                      .|+|  .|+|.+.+..+... ..+.|.|...  +.+. .....+.+|+.+.|.|.+.  |.+.+.|  ++..+....   
T Consensus        69 ~d~g~g~Y~C~a~n~~~~~~-~~~~l~V~~~p~p~~~-~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---  139 (265)
T 2oz4_A           69 EDEGTQRLTCAVILGNQSQE-TLQTVTIYSFPAPNVI-LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---  139 (265)
T ss_dssp             GGCEEEEEEEEEEETTEEEE-EEEEEEEECCCCCEEE-ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---
T ss_pred             ccCCcceEEEEEecCCCCcE-EEEEEEEeCCCCceee-cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---
Confidence            6777  59999999887765 7788888653  3333 3455678899999999998  8889999  777663221   


Q ss_pred             EecCCeEEEEecccCCCCcEEEEEEEeCC-CCCc--cceEEEEeecCCccccC--CCCCccCCCCeeeEEEEeccCCCCc
Q psy14532        161 VFPNGTLLIENVQKDHDRGVYWCTATNKQ-GRSS--SQNVHISVTVPPKIAPF--EFQPDLHSGDRAGVQCLVTKGDPPL  235 (258)
Q Consensus       161 ~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~  235 (258)
                        ..+.|.|..+.. +|+|.|+|.+.|.. +...  +..+.|.|..+|.+...  +....+.+|+.+.|.|.+ .+.|.+
T Consensus       140 --~~~~l~i~~~~~-~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~-~g~P~p  215 (265)
T 2oz4_A          140 --PRAQLLLKATPE-DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLP  215 (265)
T ss_dssp             --SEECCEEECCGG-GTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCC-EEESCC
T ss_pred             --CcEEEEEccccc-cCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeEC-ccCCCC
Confidence              224577777776 89999999998654 4322  26677888888876544  334568889999999999 699999


Q ss_pred             eeEEEECCE
Q psy14532        236 TISWLKNGL  244 (258)
Q Consensus       236 ~~~W~~~g~  244 (258)
                      .+.|+++|.
T Consensus       216 ~i~W~~~~~  224 (265)
T 2oz4_A          216 ELKCLKDGT  224 (265)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCc
Confidence            999999987

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.8e-27  Score=178.30  Aligned_cols=213  Identities=14%  Similarity=0.199  Sum_probs=142.6

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |.|.....++.+.+|++++|.|.+.+.    +.|++++..+...     ......            ....++|.|.++ 
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~-----~~~~~~------------~~~~~~L~i~~~-   58 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQE-----MAKAQD------------GTFSSVLTLTNL-   58 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEE-----EEECTT------------SCEEEEEEECSC-
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccc-----eeccCC------------CceeEEEEEccC-
Confidence            566666777889999999999998864    9999998766311     110000            001357999999 


Q ss_pred             cCCCceEEEEEEEeCCcceee--ceEEEEEecCC--eeccCCC---cceecCCcEEEEeeeCcccCceEEEEeCCcccCC
Q psy14532         83 KDHDRGVYWCTATNKQGRSSS--QNVHISVTGAP--FVRPMGN---VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL  155 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~~~--~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~  155 (258)
                      +.+|+|.|+|.+.+..+....  ..+.|.|..+.  ++.....   ..+.+|+.+.|.|.+. .|.+.++|++++.....
T Consensus        59 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~  137 (289)
T 3mjg_X           59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVAL  137 (289)
T ss_dssp             CGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCC
T ss_pred             ChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcc
Confidence            999999999999988765322  44445544332  2222112   4578899999999998 57788999886532222


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec--CCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV--PPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      ...  ......+.    .. .|+|.|+|.+.+..+...+..+.|.+..  +|.+...+....+.+|+.+.|.|.+ .+.|
T Consensus       138 ~~~--~~~~~~~~----~~-~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~-~g~p  209 (289)
T 3mjg_X          138 PVP--YDHQRGFS----GI-FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIV-IGNE  209 (289)
T ss_dssp             CCC--EETTTEEE----EC-CCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEE-ESCS
T ss_pred             cee--ecCCcCee----ee-ccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEE-CCCC
Confidence            111  11111111    24 7999999999987665555666677765  5555555556678899999999999 5799


Q ss_pred             CceeEEEECCEec
Q psy14532        234 PLTISWLKNGLPI  246 (258)
Q Consensus       234 ~~~~~W~~~g~~l  246 (258)
                      .+.+.|+++++..
T Consensus       210 ~p~v~W~~~~~~~  222 (289)
T 3mjg_X          210 VVNFEWTYPRKES  222 (289)
T ss_dssp             SBEEEEECTTSSS
T ss_pred             CcceEEEcCCccC
Confidence            9999999877654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.95  E-value=3e-27  Score=169.66  Aligned_cols=170  Identities=17%  Similarity=0.266  Sum_probs=134.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...+.+..+.+|++++|.|.+.+.+.+. +.|+|++..+...                          .++|.|.+
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--------------------------~~~L~i~~   60 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------------------------ASSYFIDA   60 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--------------------------SSEEEESS
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--------------------------ccEEEEec
Confidence            46777888878899999999999999877664 9999998876543                          25899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcc-cCceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~~~~~~~~  159 (258)
                      + +.+|+|.|+|.+.+..  . +..+.|.|...+.+.......+.+|+.+.|.|.+.+. |.+.+.|++++..+..    
T Consensus        61 v-~~~D~G~Y~C~a~n~~--~-s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----  132 (204)
T 3sgj_C           61 A-TVDDSGEYRCQTQLST--L-SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----  132 (204)
T ss_dssp             C-CGGGCEEEEEEETTSB--C-CCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----
T ss_pred             c-cccCCEEEEEEeCCCc--c-cccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----
Confidence            9 9999999999998742  2 3567888887776555555778899999999999665 5689999999987532    


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                       ....+.|.|.++.. +|+|.|+|.+.|..+...+..+.|.|..+|..
T Consensus       133 -~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~  178 (204)
T 3sgj_C          133 -FHHNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITITQGLAV  178 (204)
T ss_dssp             -EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             -ccCCceEEECcCCc-ccCEEEEEEEEeCCCceecCcEEEEEeCcCCC
Confidence             22467899999998 99999999999965545677888888876543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.95  E-value=1.2e-26  Score=163.71  Aligned_cols=178  Identities=25%  Similarity=0.459  Sum_probs=135.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|+|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+...   ....+..        .   .....++|.|.++
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~---~~~~~~~--------~---~~~~~~~L~i~~~   67 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL---DQLYIPV--------S---EQHWIGFLSLKSV   67 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS---EEEEEEE--------E---TTEEEEEEEESSC
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC---CceEEEe--------c---CCCceEEEEEeec
Confidence            678888999999999999999999998888899999999887654   1111110        0   0011357999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcce
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~  159 (258)
                       +..|+|.|+|.+.+..+...+..+.|.|..+|.+.. +....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... 
T Consensus        68 -~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-  145 (182)
T 1rhf_A           68 -ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-  145 (182)
T ss_dssp             -CGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-
T ss_pred             -CcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-
Confidence             999999999999998766555788899988775543 455678899999999999999988 9999999987754322 


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                         ....|.|.++   +|+|.|+|.|.|..|...+..+.|.|
T Consensus       146 ---~~~~L~i~~~---~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          146 ---SPSVLNVTGV---TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ---SSEEEEECCC---SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---CceEEEEecc---ccCeEEEEEEECCCCCcccceEEEEe
Confidence               5567888776   57899999999998865556676665

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.95  E-value=3.1e-27  Score=165.90  Aligned_cols=169  Identities=22%  Similarity=0.340  Sum_probs=134.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...+....+.+|++++|.|.+.+.+.+ .+.|++++..+...                          +++|.|.+
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------------------------~~~L~i~~   57 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------------------------NSSLNIVN   57 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC--------------------------SSEEEECS
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC--------------------------ceEEEEec
Confidence            6888888888899999999999999887664 69999998876532                          56899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      + +.+|+|.|+|.+.+..+.   ..+.|.|..++.........+.+|+.+.|.|.+. +.|.+.+.|++++..+...   
T Consensus        58 v-~~~d~G~Y~C~~~~~~~s---~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~---  130 (176)
T 1f2q_A           58 A-KFEDSGEYKCQHQQVNES---EPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW---  130 (176)
T ss_dssp             C-CGGGCEEEEEECTTSSCC---CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC---
T ss_pred             c-ceecCEEEEEEcCCcccc---ccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee---
Confidence            9 999999999999875432   5567777755554444556788999999999995 5667799999999877432   


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                        ..++.|.|.++.. +|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus       131 --~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          131 --YENHNISITNATV-EDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             --CCSSEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             --cCCCeEEECCCCc-ccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence              2356899999997 9999999999997654567778899988775

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=1.1e-25  Score=186.26  Aligned_cols=228  Identities=18%  Similarity=0.228  Sum_probs=160.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC------
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG------   74 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   74 (258)
                      +|.+...+.+..+.+|++++|.|.+.+. +.+.+.|+|++.......      ..........+..+..+..++      
T Consensus       112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~~  185 (585)
T 2ocw_A          112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV------IDSSGYVNPNYTGRIRLDIQGTGQLLF  185 (585)
T ss_pred             CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEE------ecCCcccCccccCcEEEEeccCCCcEE
Confidence            5777777888899999999999999864 456899999865321100      000000011112222222222      


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCccc-C-ceEEEE-eCCc
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP-I-ESITWQ-KGVQ  151 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~-~~i~W~-~~~~  151 (258)
                      +|.|.++ +.+|+|.|+|.+.+..+... ..+.|.|..++    +....+.+|+.+.|.|.+.+.+ . +.+.|+ +++.
T Consensus       186 ~L~I~~v-~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~----p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~  259 (585)
T 2ocw_A          186 SVVINQL-RLSDAGQYLCQAGDDSNSNK-KNADLQVLKPE----PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGE  259 (585)
T ss_pred             EEEEccC-ChhHCeEEEEEeccCCcccc-ceEEEEEccCC----CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCC
Confidence            6999999 99999999999998887765 77888887543    2334577899999999974322 2 688896 7763


Q ss_pred             ccC------------CCcceEEec---CC--eEEEEecccCCCCcEEEEEEEeCCCCCc----cceEEEEeecCCccccC
Q psy14532        152 QLP------------LNRRQKVFP---NG--TLLIENVQKDHDRGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPF  210 (258)
Q Consensus       152 ~~~------------~~~~~~~~~---~~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~  210 (258)
                      ...            ...+..+..   ++  .|.|.++.. +|+|.|+|.|.|. +...    ...+.|.|..+|.+...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~-~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~  337 (585)
T 2ocw_A          260 NCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRK-EDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRS  337 (585)
T ss_pred             CcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCCh-hhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccC
Confidence            211            122333321   34  699999997 9999999999995 3222    26778889888888777


Q ss_pred             CCCCccCCCCeeeEEEEeccCCCCcee----EEEE--CCE
Q psy14532        211 EFQPDLHSGDRAGVQCLVTKGDPPLTI----SWLK--NGL  244 (258)
Q Consensus       211 ~~~~~~~~g~~~~l~C~~~~~~p~~~~----~W~~--~g~  244 (258)
                      +....+.+|+.+.|.|.+ .+.|.+.+    .|++  +|.
T Consensus       338 ~~~~~~~~G~~v~l~C~~-~~~p~p~i~~w~~W~~~~~g~  376 (585)
T 2ocw_A          338 PTVVKGVAGSSVAVLCPY-NRKESKSIKYWCLWEGAQNGR  376 (585)
T ss_pred             CcceEEEeCCcEEEEEec-CCCCCccEEEEEEEEccCCCC
Confidence            777788899999999999 68888766    7999  887

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.95  E-value=2.9e-26  Score=183.29  Aligned_cols=230  Identities=16%  Similarity=0.202  Sum_probs=150.2

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCC----CeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCC
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNG   74 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   74 (258)
                      .|...|.++.+.+|++++|.|.+.+.+.    +.+.|+|++  ..+........       .....+..+....   ...
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~-------~~~~~~~~r~~~~~~~~~~   75 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRAS-------NLESGIPDRFSGSGSRTDF   75 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSS-------CBCSSCCTTEEEEEETTEE
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECc-------ccCCCccCcEEEEccCCcE
Confidence            4566788899999999999999987765    489999963  22110000000       0000111121111   134


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SITWQK  148 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~  148 (258)
                      +|.|.++ +.+|+|.|+|.+.+..+........|.|..   +|.+.. ........|+.+.|.|.+.+ .|.+ .+.|++
T Consensus        76 ~L~I~~v-~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  154 (438)
T 1qgc_4           76 TLTIDPV-EADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  154 (438)
T ss_dssp             EEEESSC-CGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEEeCCC-cCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEE
Confidence            7999999 999999999999998764433556677753   333332 23333446889999999987 6666 899999


Q ss_pred             CCcccCCCcce--E--------EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecC--CccccCCCCCcc
Q psy14532        149 GVQQLPLNRRQ--K--------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP--PKIAPFEFQPDL  216 (258)
Q Consensus       149 ~~~~~~~~~~~--~--------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~  216 (258)
                      ++..+......  .        ....+.|.|.++.. +|+|.|+|.|.|..+..   .+.+.+...  +.....+....+
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v  230 (438)
T 1qgc_4          155 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLV  230 (438)
T ss_dssp             TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEE
T ss_pred             CCEEcCCCceeccccccCCCCcEEEEEEEEEeCccc-CCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEE
Confidence            99876544111  0        11123689999987 99999999999987642   333444321  111112345568


Q ss_pred             CCCCeeeEEEEeccCCC--CceeEEEEC--CEec
Q psy14532        217 HSGDRAGVQCLVTKGDP--PLTISWLKN--GLPI  246 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p--~~~~~W~~~--g~~l  246 (258)
                      .+|+.++|.|.+ .+.|  .+.+.|+++  |+.+
T Consensus       231 ~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~  263 (438)
T 1qgc_4          231 KPGGSLKLSCTA-SGFIFNRCAMSWVRQTPEKRL  263 (438)
T ss_dssp             CTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEE
T ss_pred             ecCCcEEEEEEE-cccccCCcEEEEEECCCCCCc
Confidence            899999999999 5766  679999986  5443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.95  E-value=9.9e-27  Score=178.81  Aligned_cols=233  Identities=16%  Similarity=0.256  Sum_probs=144.1

Q ss_pred             CCcceeeceeeeecCC--CceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKFIQQTLQPG--PPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g--~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ||.+...+.......|  +++.|.|.+.+. | .+.|.|+|+|..+............         ..  .......|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~---------~g--~~~~~s~l~   75 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE---------GE--LASTQSELT   75 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE---------TT--EEEEEEEEE
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc---------CC--cEEEEEEEE
Confidence            6777655544444445  699999999885 3 4699999999887643110000000         00  011123577


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEe---cCCe--eccCCCcceecCCcEEEEeeeCcc-cCc---eEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---GAPF--VRPMGNVSAIAGEPLYLGCPVAGY-PIE---SITWQK  148 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~~~--~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~i~W~~  148 (258)
                      |.+. ...|+|.|+|.+.+..+... ..+.+.+.   ..+.  +..+....+..|+.+.|.|.+.+. |.+   .|.|++
T Consensus        76 i~~~-~~~d~g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k  153 (323)
T 2wqr_A           76 LSQK-HWLSDRTYTCQVTYQGHTFE-DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSR  153 (323)
T ss_dssp             EEHH-HHHTTCCEEEEEEETTEEEE-EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEE
T ss_pred             EcHH-HcCCCCcEEEEEEeCCCCcc-eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEE
Confidence            8877 77899999999999765433 22221111   1121  122333457789999999999875 455   899999


Q ss_pred             CC-cccCCCcceE-------EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe----ecCCccccCCCCCcc
Q psy14532        149 GV-QQLPLNRRQK-------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV----TVPPKIAPFEFQPDL  216 (258)
Q Consensus       149 ~~-~~~~~~~~~~-------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~  216 (258)
                      ++ ..+.......       ....+.|.|.++.. +|+|.|+|.+.|.... ....+.+.+    ..+|.+...+.....
T Consensus       154 ~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~  231 (323)
T 2wqr_A          154 ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDW-IEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPEWP  231 (323)
T ss_dssp             TTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHH-HTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCCCT
T ss_pred             CCCcccccccCCCccCCCCCEEEEEEEEECHHHc-cCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCChHH
Confidence            65 4433221111       11233689999987 9999999999997632 112222221    245554443333223


Q ss_pred             CCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        217 HSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      ..|+.++|.|.+.+.+|. +.|.|++||+.|..+
T Consensus       232 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~  265 (323)
T 2wqr_A          232 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA  265 (323)
T ss_dssp             TCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             hcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC
Confidence            349999999999544554 489999999998765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=165.19  Aligned_cols=178  Identities=17%  Similarity=0.237  Sum_probs=117.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+. ..+.+|++|+|.|.+.+.+. .+.|+|++..+.......                 .....+++|.|.++
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-----------------~~~~~~~~L~i~~v   65 (196)
T 2d3v_A            5 KATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNP-----------------LEPKNKARFSIPSM   65 (196)
T ss_dssp             BCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECC-----------------CSSTTEEEEEESSC
T ss_pred             CCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccc-----------------cCCccccEEEeccC
Confidence            688887776 47899999999999987655 999999987654321000                 00112457999999


Q ss_pred             ccCCCceEEEEEEEeCCcce-eeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGRS-SSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +.+|+|.|+|.+.+..+.. .+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+.| +.+.|++++..+....
T Consensus        66 -~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~  143 (196)
T 2d3v_A           66 -TEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWT  143 (196)
T ss_dssp             -CGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-SEEEEEEC---CCEEE
T ss_pred             -ChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccc
Confidence             9999999999999876532 23667788876   3444443345688999999999999888 8999999998764322


Q ss_pred             ce-EEec----CCeEEEEecccCCCCcEEEEEEEeCCC----CCccceEEEEe
Q psy14532        158 RQ-KVFP----NGTLLIENVQKDHDRGVYWCTATNKQG----RSSSQNVHISV  201 (258)
Q Consensus       158 ~~-~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~----~~~~~~~~l~v  201 (258)
                      .. ....    .+.|.|.+++. +|+|.|+|.+.|..+    +..+..+.|.|
T Consensus       144 ~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          144 LDSQLTPSGQFQALFPVGPVTP-SHRWMLRCYGSRRHILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             EECEECTTSCEEEEEECCCCBT-TBCEEEEEEEEETTEEEEECCCCCCEEECC
T ss_pred             cccccccCCCceeEEEeeecCc-ccCeeEEEEEEccCCCCccCCCCccEEEEe
Confidence            11 1111    25799999997 999999999998653    23344555443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.94  E-value=6.3e-27  Score=167.42  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=120.2

Q ss_pred             eeeecCCCceEEEEE---EeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceee---eeCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~   84 (258)
                      ++.+..|++++|.|.   +.+.|.+.|.|+|++........ .+ ...........+..+...   ....+|.|.++ +.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~   78 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLI-GR-MHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA-NI   78 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEE-EE-EETTEEEECGGGBTTEEEEEETTEEEEEESSC-CG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEE-Ee-cCCceEEeeccccceEEEEEcCCEEEEEEccC-CH
Confidence            467899999999996   45678899999997643321100 00 000000111111111111   12346999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC----CCcce
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----LNRRQ  159 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~----~~~~~  159 (258)
                      +|+|.|+|.+.+..+... ..+.|.|..++.+.. +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.    ...+.
T Consensus        79 ~D~G~Y~C~a~n~~g~~~-~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~  157 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV  157 (203)
T ss_dssp             GGCEEEEEEEEETTEEEE-EEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CC
T ss_pred             HHCeEEEEEEEcCCCcEE-EEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceE
Confidence            999999999999888776 778888887765543 445667889999999999999999999998765432    23455


Q ss_pred             EEecCCeEEE---EecccCCCCcEEEEEEEeCCCC
Q psy14532        160 KVFPNGTLLI---ENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       160 ~~~~~~~l~i---~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      .+..+++|.|   .++.. +|.|.|+|.|.|..|+
T Consensus       158 ~~~~~g~l~il~i~~v~~-~D~G~YtC~A~N~~G~  191 (203)
T 4fa8_A          158 MKEKDGSLSVAVDLSLPK-PWHLPVTCVGKNDKEE  191 (203)
T ss_dssp             EECTTSCEEEEEEEEECS-SCCCCEEEEEESSSCE
T ss_pred             EEeCCCCEEEEEECCCCH-HHCEEEEEEEEcCCCE
Confidence            6667776655   57776 9999999999999885

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=163.66  Aligned_cols=179  Identities=18%  Similarity=0.272  Sum_probs=130.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+....   ....              .....++|.|.++
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~---~~~~--------------~~~~~~~L~i~~v   65 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR---QNPL--------------EPKNKARFSIPSM   65 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE---ECCC--------------SSSSEEEEEESSC
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc---cccc--------------cCCceEEEEeccC
Confidence            6778878777 7899999999999887 678999999987664320   0000              0012457999999


Q ss_pred             ccCCCceEEEEEEEeCCc-ceeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQG-RSSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +.+|+|.|+|.+.+..+ ...+..+.|.|..   ++.+.......+.+|+.++|.|.+.+ +.+.+.|++++..+....
T Consensus        66 -~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~  143 (196)
T 3p2t_A           66 -TEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLC  143 (196)
T ss_dssp             -CGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGS
T ss_pred             -CcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCC-CCCEEEEEeCCCccccee
Confidence             99999999999999877 2334677888864   33443333346789999999999977 446899999988664332


Q ss_pred             ce----EEecCCeEEEEecccCCCCcEEEEEEEeCCC----CCccceEEEEee
Q psy14532        158 RQ----KVFPNGTLLIENVQKDHDRGVYWCTATNKQG----RSSSQNVHISVT  202 (258)
Q Consensus       158 ~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~----~~~~~~~~l~v~  202 (258)
                      ..    .....+.|.|.++.. +|+|.|+|.+.|..+    ...+..+.|.|.
T Consensus       144 ~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          144 LRSEHGAQQHQAEFPMSPVTS-VHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEEEEEEEEEEEEEEECSCCG-GGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             ecccccccCcceEEEeCCCcc-cCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            21    122456799999997 999999999999865    344566666653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.94  E-value=3.7e-26  Score=163.44  Aligned_cols=179  Identities=18%  Similarity=0.222  Sum_probs=125.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+. ..+.+|++|+|.|.+.+.+. .+.|+|++..+.......                 .....+++|.|.++
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-----------------~~~~~~~~L~i~~v   65 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-----------------QELVKKGQFPIPSI   65 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-----------------HHHHTTTEEEESSC
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-----------------ccCCcccEEEECCC
Confidence            678877776 47899999999999987755 799999987653210000                 00113568999999


Q ss_pred             ccCCCceEEEEEEEeCC-cc-eeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC
Q psy14532         82 QKDHDRGVYWCTATNKQ-GR-SSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN  156 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~  156 (258)
                       +..|+|.|+|.+.+.. +. ..+..+.|.|..   .+.+.......+.+|+.+.|.|.+.+. .+.+.|++++..+...
T Consensus        66 -~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~  143 (198)
T 1ugn_A           66 -TWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQ  143 (198)
T ss_dssp             -CGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEEEC------C
T ss_pred             -CHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCc
Confidence             9999999999999876 42 223677888876   344444444678899999999999887 6799999998876432


Q ss_pred             cce-EEec----CCeEEEEecccCCCCcEEEEEEEeCCCC----CccceEEEEee
Q psy14532        157 RRQ-KVFP----NGTLLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVT  202 (258)
Q Consensus       157 ~~~-~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~  202 (258)
                      ... ....    .+.|.|.++.. +|+|.|+|.|.|..+.    ..+..+.|.|.
T Consensus       144 ~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          144 CLNSQPHARGSSRAIFSVGPVSP-SRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEC------CCEEEEEECCCCT-TSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             cccccccCCCcceeEEEecccCc-ccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            211 1111    36799999997 9999999999998642    23566666664

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.94  E-value=6.8e-26  Score=163.65  Aligned_cols=192  Identities=20%  Similarity=0.357  Sum_probs=138.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |+.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+....      ..... .......+... ..++|.|.++
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~------~~~~~-~~~~~~~r~~~-~~~~L~i~~v   72 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALV------CYNSQ-ITAPYADRVTF-SSSGITFSSV   72 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEE------EETTE-ECGGGTTTEEE-ETTEEEESCC
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEE------ecCCc-ccccccCcEEe-eceeEEEccc
Confidence            4567778888999999999999999988888999999764421110      00000 00111122222 3478999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeecc-CCCcceecCCcEEEEee-eCcccCceEEEEeCCc-ccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCP-VAGYPIESITWQKGVQ-QLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~-~~~~~~~~i~W~~~~~-~~~~~~  157 (258)
                       +..|+|.|+|.+.+..+. .....+.|.|..+|.... .....+..|+.+.|.|. +.+.|.+.+.|++++. .+....
T Consensus        73 -~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~  151 (212)
T 1f97_A           73 -TRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA  151 (212)
T ss_dssp             -CGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC---
T ss_pred             -CcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccc
Confidence             999999999999998652 223778888887764432 33456889999999999 6889999999999998 776433


Q ss_pred             c---------eEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEEEeec
Q psy14532        158 R---------QKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTV  203 (258)
Q Consensus       158 ~---------~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~  203 (258)
                      .         +.. ...+.|.|.++.. +|.|.|+|.|.|..+.. .+..+.|.|..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          152 KKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             --CBSCSSSCEEECTTTCCEEESSCCG-GGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccccccCceeEecCCCceEEEEecCh-hhCcEEEEEEccccCCccccceEEEEEEE
Confidence            2         122 2456899999997 99999999999998865 46777777764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=1.9e-26  Score=178.73  Aligned_cols=237  Identities=18%  Similarity=0.334  Sum_probs=144.2

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++++|.|.+.+.  +.+.+.|+|+  +..+....  ..............+..|..+..     +++|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIG--YFSPGNDDFKYNERFKGKATLTADTSASTAYVE   82 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEE--EEETTTTEEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEE--EEecCCCceEECcccCCcEEEEEecCCCEEEEE
Confidence            45567889999999999999876  3578999986  32211000  00000000000111222222222     35799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceEEEEeCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESITWQKGV  150 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~  150 (258)
                      |.++ +.+|+|.|+|.+.+..+... ....|.|..    +|.+.. .....+..|+.+.|.|.+.|. |. +.+.|++++
T Consensus        83 I~~v-~~~D~G~Y~C~~~n~~~~~~-~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g  160 (344)
T 1za6_B           83 LSSL-RSEDTAVYFCTRSLNMAYWG-QGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA  160 (344)
T ss_dssp             ECSC-CGGGCEEEEEEETTTTCEEC-CCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTT
T ss_pred             ECCC-CcccCEEEEEEEecCcceec-CcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCC
Confidence            9999 99999999999998543333 556777763    232222 223446789999999999886 54 699999988


Q ss_pred             cccCCCcc-eEEec------CCeEEEEecccCCCCcEEEEEEEeCCCCCc-cceEEE----------------------E
Q psy14532        151 QQLPLNRR-QKVFP------NGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHI----------------------S  200 (258)
Q Consensus       151 ~~~~~~~~-~~~~~------~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l----------------------~  200 (258)
                      ..+..... .....      .+.|.|.++.. +| |.|+|.|.|..+... ...+.+                      .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~  238 (344)
T 1za6_B          161 LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG  238 (344)
T ss_dssp             BCTTEEECCCEECTTSCEEEEEEEEEETTHH-HH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------
T ss_pred             ccCceeECCCeECCCCCEEEEEEEEEcHHHc-CC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence            76421100 00111      23688888876 67 999999999865311 111111                      1


Q ss_pred             eecCCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEECCEecccc
Q psy14532        201 VTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSA  249 (258)
Q Consensus       201 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~  249 (258)
                      +..+|.+...+.......|+.++|.|.+.+.+| .+.+.|++||+.+...
T Consensus       239 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~  288 (344)
T 1za6_B          239 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY  288 (344)
T ss_dssp             CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSE
T ss_pred             CCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCc
Confidence            123454443332222334667999999954355 4799999999988654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.94  E-value=9.6e-26  Score=165.00  Aligned_cols=188  Identities=21%  Similarity=0.349  Sum_probs=137.9

Q ss_pred             CCcceeec----eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKF----IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~----~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|.+...+    ....+.+|++++|.|.+.+.|.+.+.|++++..+.........               .....+.+|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------------~~~~~~~~L~   79 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY---------------KVRNQHWSLI   79 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCC---------------EEEGGGTEEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccce---------------eeecCcceEE
Confidence            45554444    6778999999999999999888999999999887544211111               1122356799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC----eec--cCCCcceecCCcEEEEeeeCcccCceEEEEe---
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVR--PMGNVSAIAGEPLYLGCPVAGYPIESITWQK---  148 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~----~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~---  148 (258)
                      |.++ +..|+|.|+|.+.+..+... ..+.|.|...+    ...  .+....+..|+.+.|.|.+.+.|.+.+.|++   
T Consensus        80 i~~~-~~~d~G~Y~C~~~n~~~~~~-~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~  157 (231)
T 3ojm_B           80 MESV-VPSDKGNYTCVVENEYGSIN-HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE  157 (231)
T ss_dssp             ECSC-CGGGCEEEEEEEEETTEEEE-EEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECC
T ss_pred             EecC-CcccCEEEEEEEecccCccc-ccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCC
Confidence            9999 99999999999999877665 77778886532    222  1345678899999999999999999999999   


Q ss_pred             -CCcccCCCcceE----------EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccc
Q psy14532        149 -GVQQLPLNRRQK----------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA  208 (258)
Q Consensus       149 -~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~  208 (258)
                       ++..+.......          ....+.|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|..+|..+
T Consensus       158 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          158 KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICKVSNYIGQ-ANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             BTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEECCC---
T ss_pred             CCCccccCCCcceEeEecccccccCCccEEEEecCCH-HHCeEEEEEEEeccce-EeeEEEEEEecCCCCC
Confidence             666554332111          11234699999997 9999999999999874 4677888888776543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.94  E-value=3.5e-25  Score=183.18  Aligned_cols=225  Identities=16%  Similarity=0.197  Sum_probs=155.4

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCC---eEEEeeCCEeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      +..|.++.+.+|++++|.|.+.+.+.+   .+.|+|++..+....     .+.........+..|..+..     ..+|.
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~-----~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~   78 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCIT-----LISSEGYVSSKYAGRANLTNFPENGTFVVN   78 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceE-----EEECCCcccceeeceEEEEecCCCCEEEEE
Confidence            346778899999999999999886543   899999875321000     00000000001111222211     23699


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcc-cCceEEEEeCCcccC-
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLP-  154 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~~~-  154 (258)
                      |.++ +.+|+|.|+|.+.+..+... ..+.|.|..+|.+. .+....+.+|+.+.|.|.+.+. +.+.+.|++++.... 
T Consensus        79 I~~v-~~~D~G~Y~C~~~n~~~~~~-~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~  156 (585)
T 2ocw_A           79 IAQL-SQDDSGRYKCGLGINSRGLS-FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV  156 (585)
T ss_pred             ECCC-CcccCEEEEEEcccCCCCce-EEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCce
Confidence            9999 99999999999998877655 77888998777544 3556678899999999999864 457899999875421 


Q ss_pred             ------------CCcceEEecCC------eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCcc
Q psy14532        155 ------------LNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL  216 (258)
Q Consensus       155 ------------~~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~  216 (258)
                                  ...+..+..++      .|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|..++     +....+
T Consensus       157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~-----p~~~~~  229 (585)
T 2ocw_A          157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL-SDAGQYLCQAGDDSNS-NKKNADLQVLKPE-----PELVYE  229 (585)
T ss_pred             EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCCh-hHCeEEEEEeccCCcc-ccceEEEEEccCC-----CceeEE
Confidence                        12333443333      699999997 9999999999988774 5567778877543     223456


Q ss_pred             CCCCeeeEEEEeccCCCC-ceeEEE-ECCE
Q psy14532        217 HSGDRAGVQCLVTKGDPP-LTISWL-KNGL  244 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p~-~~~~W~-~~g~  244 (258)
                      .+|+.+.|.|.+....|. +.+.|+ ++|.
T Consensus       230 ~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~  259 (585)
T 2ocw_A          230 DLRGSVTFHCALGPEVANVAKFLCRQSSGE  259 (585)
T ss_pred             cCCCcEEEEEEcCCCCCCceEEEEEeCCCC
Confidence            789999999998322233 789997 8873

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.94  E-value=2.4e-25  Score=167.97  Aligned_cols=181  Identities=25%  Similarity=0.428  Sum_probs=139.2

Q ss_pred             CCcceeec-eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKF-IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   .....             .......|.|.+
T Consensus        98 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~---~~~~~-------------~~~~~~~L~i~~  161 (284)
T 2rik_A           98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---KFRMS-------------FVESVAVLEMYN  161 (284)
T ss_dssp             CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSS---SEEEE-------------EETTEEEEEECS
T ss_pred             CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCC---cEEEE-------------EcCCEEEEEECC
Confidence            45554333 34568899999999999998999999999998876541   11111             011235799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      + +..|+|.|+|.+.+..+... ..+.|.|..+|.+.. +....+..|+.+.|.|.+.+.|.+.+.|++++..+....+.
T Consensus       162 ~-~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~  239 (284)
T 2rik_A          162 L-SVEDSGDYTCEAHNAAGSAS-SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY  239 (284)
T ss_dssp             C-CGGGCEEEEEEEECSSCEEE-EEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTE
T ss_pred             C-CcccCEEEEEEEEcCCCcee-EEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCE
Confidence            9 99999999999999988766 788899988876543 44567889999999999999999999999999888766655


Q ss_pred             EEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        160 KVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       160 ~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      .+...   ..|.|.++.. +|.|.|+|.|.|..|. ....+.|.|.
T Consensus       240 ~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~V~  283 (284)
T 2rik_A          240 KIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGS-YTCVGSITLK  283 (284)
T ss_dssp             EEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEcCCEEEEEEcCCCc-ccCEEEEEEEEeCCCc-eeEEEEEEEc
Confidence            54433   3688999997 9999999999999884 4455566553

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.94  E-value=8.4e-26  Score=157.65  Aligned_cols=164  Identities=21%  Similarity=0.277  Sum_probs=129.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+....+.+|+++.|.|.+.+.+ .+.+.|++++..+...                          ...+.|.+
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------------------------~~~~~~~~   57 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------------------------TQPSYRFK   57 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------------------------CSSEEEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------------------------ccceEEEe
Confidence            35566777777899999999999998875 5699999999877643                          34677889


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcce
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      + +..|+|.|+|.+.+...   +..+.|.|..++.........+.+|+.+.|.|.+. +.|.+.+.|++++..+..    
T Consensus        58 ~-~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----  129 (170)
T 3ry4_A           58 A-NNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF----  129 (170)
T ss_dssp             C-CGGGCEEEEEEETTSBC---CCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE----
T ss_pred             c-ccccCeEEEEEEeCCCc---eEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc----
Confidence            9 99999999999986432   25577888877655555566788999999999995 456689999999887542    


Q ss_pred             EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       160 ~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                       ...++.|.|.++.. +|.|.|+|.+.|..+...+..+.|.|
T Consensus       130 -~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          130 -SHLDPTFSIPQANH-SHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             -ESSCCEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -cCCCCeEEEEeccc-cCCEEEEEEEEeCcCccccccEEEEE
Confidence             22456799999997 99999999999988755666666665

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.94  E-value=8.4e-26  Score=177.62  Aligned_cols=169  Identities=30%  Similarity=0.517  Sum_probs=134.9

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      +....+.+|+++.|.|.+.+.|.+.+.|+|+ +..+...   ...                 ...+++|.|.++ +.+|+
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~---~~~-----------------~~~~~~L~I~~v-~~~D~  270 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK---ARR-----------------HKSNGILEIPNF-QQEDA  270 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT---CEE-----------------CTTSCEEEECSC-CGGGC
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc---cee-----------------cCCCcEEEECCC-ChhhC
Confidence            4566788999999999999999999999995 4344322   110                 112568999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCe
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT  166 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~  166 (258)
                      |.|+|.+.|..|... ....|.|..+|.+ .......+..|+.+.|.|.+.|.|.+.+.|++++..+....+..+ .++.
T Consensus       271 G~Y~C~a~N~~G~~~-~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~  348 (384)
T 3kld_A          271 GSYECVAENSRGKNV-AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGT  348 (384)
T ss_dssp             EEEEEEEEETTEEEE-EEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE-ETTE
T ss_pred             EEEEEEEEcCCCeEE-EEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE-eCCE
Confidence            999999999988776 6777888766643 345567788999999999999999999999999998876666554 5678


Q ss_pred             EEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       167 l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      |.|.++.. +|+|.|+|.|.|..|. ......|.|.
T Consensus       349 L~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~a~L~V~  382 (384)
T 3kld_A          349 LNITIVNL-SDAGMYQCVAENKHGV-IFSSAELSVI  382 (384)
T ss_dssp             EEESSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEeecCh-hhCEEEEEEEEeCCce-EEeceEEEEe
Confidence            99999997 9999999999999884 4455666664

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=6.1e-26  Score=181.73  Aligned_cols=229  Identities=14%  Similarity=0.214  Sum_probs=144.8

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      |.+........+.+|+.++|.|.+.+. |.+ .+.|++++..+..... ... ..         .  ......+.|.|.+
T Consensus       124 P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~-~~~-~~---------~--~~~~~~s~L~i~~  190 (444)
T 1igt_B          124 PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF-PAV-LQ---------S--DLYTLSSSVTVTS  190 (444)
T ss_dssp             CEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC-CCE-EE---------T--TEEEEEEEEEECS
T ss_pred             CceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEec-Ccc-cc---------C--CcEEEEEEEEEch
Confidence            444433333345799999999999885 766 9999998765321100 000 00         0  0111234688999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEE------------------ecCCee-ccCCCcc--eecCCcEEEEeeeCcc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISV------------------TGAPFV-RPMGNVS--AIAGEPLYLGCPVAGY  139 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~~~~-~~~~~~~--~~~g~~~~l~C~~~~~  139 (258)
                      + ...| |.|+|.+.+..+... ....+.+                  ..++.+ ..++...  +..|+.+.|.|.+.+.
T Consensus       191 ~-~~~d-g~Y~C~a~n~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~  267 (444)
T 1igt_B          191 S-TWPS-QSITCNVAHPASSTK-VDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDV  267 (444)
T ss_dssp             T-TTTT-SCCEEEEEETTTTEE-EEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEE
T ss_pred             h-hcCC-CeEEEEEEeCCCCcc-eEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeec
Confidence            8 8889 999999999887643 2223222                  112222 1222222  4789999999999887


Q ss_pred             c----CceEEEEeCCcccCCCcce--EE------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCc-cceEEE--EeecC
Q psy14532        140 P----IESITWQKGVQQLPLNRRQ--KV------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHI--SVTVP  204 (258)
Q Consensus       140 ~----~~~i~W~~~~~~~~~~~~~--~~------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l--~v~~~  204 (258)
                      +    .+.+.|++++..+......  ..      ...+.|.|.++.. +|+|.|+|.|.|..+... ...+.+  .+..+
T Consensus       268 ~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~  346 (444)
T 1igt_B          268 SEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW-MSGKEFKCKVNNKDLPAPIERTISKPKGSVRA  346 (444)
T ss_dssp             CTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHH-HTTCEEEEEEECTTCSSCEEEEEECCCCCCBC
T ss_pred             ccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHh-ccCCcEEEEEEcCCCCCceEEEEeccCCCCCC
Confidence            3    3599999998776432211  11      1234689999987 999999999999876431 222222  34456


Q ss_pred             CccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccc
Q psy14532        205 PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILS  248 (258)
Q Consensus       205 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~  248 (258)
                      |.+...+.......++.++|.|.+.+.+|.+ .|.|++||..+..
T Consensus       347 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  391 (444)
T 1igt_B          347 PQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELN  391 (444)
T ss_dssp             CEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSS
T ss_pred             CEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccc
Confidence            6655444332223344599999995446665 9999999998854

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=165.42  Aligned_cols=182  Identities=27%  Similarity=0.415  Sum_probs=131.5

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++..+.........               .....+.+|.|.++ +..|+|
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------------~~~~~~~~L~i~~v-~~~d~G   85 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI---------------KLRHQQWSLVMESV-VPSDRG   85 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCC---------------EEEGGGTEEEECSC-CGGGCE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccce---------------eeeccceEEEEEeC-CcccCE
Confidence            34678899999999999999888899999999887544211111               11223568999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEecC----Ceec--cCCCcceecCCcEEEEeeeCcccCceEEEEe----CCcccCCCcc
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVTGA----PFVR--PMGNVSAIAGEPLYLGCPVAGYPIESITWQK----GVQQLPLNRR  158 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~----~~~~~~~~~~  158 (258)
                      .|+|.+.+..+... ..+.|.|...    +.+.  ......+..|+.+.|.|.+.+.|.+.+.|++    ++..+.....
T Consensus        86 ~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~  164 (241)
T 3grw_A           86 NYTCVVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT  164 (241)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTC
T ss_pred             EEEEEEeecCCceE-EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCc
Confidence            99999999877665 6677777653    2221  2445667889999999999999999999999    7766654332


Q ss_pred             eEE-----------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcccc
Q psy14532        159 QKV-----------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP  209 (258)
Q Consensus       159 ~~~-----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~  209 (258)
                      ...           .....|.|.++.. +|.|.|+|.|.|..+. .+..+.|.|..+|....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~~  224 (241)
T 3grw_A          165 PYVTVLKSWISESVEADVRLRLANVSE-RDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEE  224 (241)
T ss_dssp             CCEEEEEEEECSBSEEEEEEEECSCCG-GGCEEEEEEEECSSCE-EEEEEEEEC--------
T ss_pred             eeeeeeeEeeeeecCCceEEEECcCCc-ccCcEEEEEEecCcce-EEEEEEEEecCCCCCCc
Confidence            111           1234699999987 9999999999999884 46778888887776543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=2.5e-25  Score=178.51  Aligned_cols=215  Identities=15%  Similarity=0.208  Sum_probs=141.0

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeecCCC---eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|.+. ..+.+..+.+|+++.|.|.+.+.+.+   .|.|+|++..+....   ...                ...+++|.
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~---~~~----------------~~~~~~L~  145 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVG----------------EPAEVTTT  145 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---CCT----------------TTEEEEEE
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc---ccc----------------cccceEEE
Confidence            45543 56666889999999999999988777   899999998775331   000                01235799


Q ss_pred             EeecccCCCceEEEEEEEeCCccee-------eceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCcc-c--CceEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSS-------SQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAGY-P--IESIT  145 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~-------~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~-~--~~~i~  145 (258)
                      |.++ +.+|+|.|+|.+.|..+...       +....|.|...+...+  .....+.+|+.+.|.|.+.+. |  .+.+.
T Consensus       146 i~~~-~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~  224 (450)
T 1z7z_I          146 VLVR-RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH  224 (450)
T ss_dssp             EECC-SSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEE
T ss_pred             EEee-ccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEE
Confidence            9999 99999999999999865321       1344555553311111  112578899999999999887 6  78999


Q ss_pred             EEeCCcccCCCcceEEecCCeEEEE---ecccCCCCc--EEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCC
Q psy14532        146 WQKGVQQLPLNRRQKVFPNGTLLIE---NVQKDHDRG--VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGD  220 (258)
Q Consensus       146 W~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~~g--~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~  220 (258)
                      |++++..+..  +.....+ .+.+.   ++.. +|.|  .|+|.+.|..+. ......|.|...|..........+.+|+
T Consensus       225 W~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~-~d~G~~~Y~C~a~n~~g~-~~~~~~l~V~~~~~p~i~~~~~~v~~G~  299 (450)
T 1z7z_I          225 LALGDQRLNP--TVTYGND-SFSAKASVSVTA-EDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILTKPEVSEGT  299 (450)
T ss_dssp             EEETTEECCC--EEEEETT-EEEEEEEEECCG-GGCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEESCSEEETTC
T ss_pred             EeCCCEeCCc--eEEecCC-ceeEEEEEEeEh-hhCCcEEEEEEEccCCcc-EEEEEEEEEecCCCCeEecCCeeEeCCC
Confidence            9999987765  2222222 22222   5666 8999  999999998763 4456677777643322223345788999


Q ss_pred             eeeEEEEeccCCCCceeEEEECCEec
Q psy14532        221 RAGVQCLVTKGDPPLTISWLKNGLPI  246 (258)
Q Consensus       221 ~~~l~C~~~~~~p~~~~~W~~~g~~l  246 (258)
                      .++|.|.+.   |.+.+.|  +|..+
T Consensus       300 ~v~l~C~~~---p~p~i~W--~g~~~  320 (450)
T 1z7z_I          300 EVTVKCEAH---PRAKVTL--NGVPA  320 (450)
T ss_dssp             EEEEEEEC------------------
T ss_pred             cEEEEEecC---CCCEeEE--CCEEc
Confidence            999999994   8889999  88877

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=1.5e-25  Score=158.91  Aligned_cols=178  Identities=17%  Similarity=0.195  Sum_probs=127.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.. .+.+|++|+|.|.+.+ +...+.|+|++..+.....  ..               .....+++|.|.++
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~--~~---------------~~~~~~~~L~I~~v   64 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP--KP---------------PERINKVKFYIPDM   64 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC--SS---------------CTTCCEEEEEESSC
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc--cc---------------CCCcceeEEEeCcC
Confidence            6788877776 7899999999999875 3468999999876542100  00               00113457999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +..|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+ +.+.+.|++++..+... 
T Consensus        65 -~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-  141 (188)
T 1oll_A           65 -NSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ-  141 (188)
T ss_dssp             -CGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE-
T ss_pred             -CcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc-
Confidence             999999999999886442 223667788764   34444333456889999999999876 45689999998776531 


Q ss_pred             ceEEecCCeEEEEecccCCCCcEEEEEEEeCC--CCCccceEEEEee
Q psy14532        158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ--GRSSSQNVHISVT  202 (258)
Q Consensus       158 ~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~--~~~~~~~~~l~v~  202 (258)
                      .......+.|.|.+++. +|+|.|+|.+.+..  ....+..+.|.|.
T Consensus       142 ~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          142 RGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEECSSEEEEEEEECCG-GGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             ccCCCceeEEEECCCCc-CCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            11223446799999998 99999999999864  2345667777664

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=158.62  Aligned_cols=168  Identities=17%  Similarity=0.218  Sum_probs=124.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++...                          ...+++|.|.++
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------------------------~~~~~~L~i~~v   59 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------------------------YQDQAVLFIPAM   59 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------------------------EESSSEEEESSC
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------------------------cCcccEEEECcC
Confidence            6777777764 7899999999999887 67899999987540                          113568999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...+...+.+|+.+.|.|.+.+.+ +.+.|++++..+....
T Consensus        60 -~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~  137 (184)
T 2gi7_A           60 -KRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKN  137 (184)
T ss_dssp             -CGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCC
T ss_pred             -ChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC-cEEEEEECCCcCccee
Confidence             999999999999997653 233667778743   3444333355678999999999987644 6899999998765422


Q ss_pred             ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC----CccceEEEEe
Q psy14532        158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISV  201 (258)
Q Consensus       158 ~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v  201 (258)
                      . .....+.|.|.++.. +|+|.|+|.+.|....    ..+..+.|.|
T Consensus       138 ~-~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          138 P-ERWYRASFPIITVTA-AHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             C-CEEEEESSSEEEETT-CCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             c-CCCceEEEEEccCCc-cCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            1 223456789999997 9999999999997532    2345555544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.94  E-value=7.6e-26  Score=163.95  Aligned_cols=182  Identities=18%  Similarity=0.241  Sum_probs=128.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC--cEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG--TLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~   79 (258)
                      +|.|...+. ..+.+|++|+|.|.+.+ +.+.+.|+|+|..+....  ...               ......+  +|.|.
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~--~~~---------------~~~~~~~~~~L~I~   69 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREI--GRR---------------LKFWNETDPEFVID   69 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEEC--SEE---------------CC----CCCEEEEC
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccc--ccc---------------CCCCcceeeEEEEc
Confidence            677877766 57899999999999876 577999999875443210  000               0001234  89999


Q ss_pred             ecccCCCceEEEEEEEeCCcc-eeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC
Q psy14532         80 NVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL  155 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~  155 (258)
                      ++ +.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...+...+.+|+.++|.|...+.+.+.+.|+|++..+..
T Consensus        70 ~v-~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~  148 (218)
T 1uct_A           70 HM-DANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP  148 (218)
T ss_dssp             SC-CGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC
T ss_pred             cc-ccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc
Confidence            99 999999999999997642 233667788764   3444333355788999999999666667789999999987654


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC----CCccceEEEEeecCC
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG----RSSSQNVHISVTVPP  205 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~----~~~~~~~~l~v~~~p  205 (258)
                      . .......+.|.|.+++. +|+|.|+|.+.+...    ...+..+.|.|...+
T Consensus       149 ~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          149 Q-HQSGEHPANFSLGPVDL-NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             S-EEECSSSEEEECCSCCG-GGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             c-ccCCCccCEEEEccCCc-ccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            2 12223456899999997 999999999998632    245677778777543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.94  E-value=8.9e-26  Score=162.23  Aligned_cols=178  Identities=15%  Similarity=0.255  Sum_probs=122.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|... .+..+.+|+.+.|.|.+.+ .|.+.+.|+++|..+...   .++.+...        .   .....+|.|.+
T Consensus         3 ~p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~---~~~~~~~~--------~---~~g~~~L~I~~   67 (207)
T 3rbs_A            3 DPFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHID--------R---NTGIIEMFMEK   67 (207)
T ss_dssp             ---CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSS---SSCEEEEC--------T---TTCEEEEEESC
T ss_pred             CCeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccC---CCEEEEEe--------C---CCCEEEEEECC
Confidence            5677654 4688999999999999865 688999999999988654   12111100        0   00122699999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEe---------------------cCCeeccCCCcceecCCcEEEEeeeCcc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------------------GAPFVRPMGNVSAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~  139 (258)
                      + +.+|+|.|+|.+.|.  ... ....+.+.                     .+|.+.......+.+|+.+.|.|.+.|.
T Consensus        68 v-~~~D~G~Y~C~a~Ng--~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~  143 (207)
T 3rbs_A           68 L-QDEDEGTYTFQLQDG--KAT-NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANI  143 (207)
T ss_dssp             C-CGGGCEEEEEEEEET--TEE-EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESC
T ss_pred             C-ChhhCEEEEEEEECC--CeE-EEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCC
Confidence            9 999999999999993  332 22232221                     1232222123567889999999999998


Q ss_pred             -cCceEEEEeCCcccCCCcceEEec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        140 -PIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       140 -~~~~i~W~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                       |.+.+.|++++..+....++.... ..+|.|.++.. +|+|.|+|.|.|..|. ....+.|.
T Consensus       144 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~L~  204 (207)
T 3rbs_A          144 KKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK-KDAGIYEVILKDDRGK-DKSRLKLV  204 (207)
T ss_dssp             CTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCG-GGCEEEEEEEEETTEE-EEEEEEEC
T ss_pred             CCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCc-ccCEEEEEEEEcCCCE-EEEEEEEe
Confidence             899999999998886654432211 23699999998 9999999999999874 33444443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=168.21  Aligned_cols=184  Identities=23%  Similarity=0.407  Sum_probs=136.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... .+                .....+++|.|.++
T Consensus        98 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~----------------~~~~~~~~L~i~~v  160 (291)
T 2wim_A           98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD-NR----------------FAMLANNNLQILNI  160 (291)
T ss_dssp             CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCC-SS----------------EEECTTSCEEETTC
T ss_pred             CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCC-ce----------------EEEccCCCEEEEec
Confidence            45555556677889999999999999988899999999876653211 11                12224668999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCC---CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMG---NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       ...|+|.|+|.+.+..+. .....+.+.+..+|.+....   ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus       161 -~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~  239 (291)
T 2wim_A          161 -NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE  239 (291)
T ss_dssp             -CGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTT
T ss_pred             -chhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCc
Confidence             999999999999987643 33356677777776554332   3457789999999999999999999999999887666


Q ss_pred             ceEEec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        158 RQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       158 ~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      +..+.. ...|.|.++.. +|+|.|+|.|.|..| .....+.|.|..++
T Consensus       240 ~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G-~~~~~~~l~v~~~~  286 (291)
T 2wim_A          240 KYILKGSNTELTVRNIIN-SDGGPYVCRATNKAG-EDEKQAFLQVFVQH  286 (291)
T ss_dssp             TEEECSTTCEEEEESCCS-TTCEEEEEEEEETTE-EEEEEEEEEC----
T ss_pred             cEEEcCCccEEEEeeCCc-ccCEEEEEEEEECCC-ceeeeEEEEEEEec
Confidence            655433 46799999997 999999999999988 45567777777654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=3.1e-25  Score=164.27  Aligned_cols=220  Identities=15%  Similarity=0.179  Sum_probs=127.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+........               ......+++|.|.++
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~---------------~~~~~~~~~L~I~~v   69 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGE---------------HHDGVSKANFSIGPM   69 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECB---------------CCTTCEEEEEEECSC
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeee---------------ccCCCceEEEEeecC
Confidence            577776665 67889999999999874 4678999998764421100000               000113467999999


Q ss_pred             ccCCCceEEEEEEEeCCc----ceeeceEEEEEecC---CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQG----RSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       +.+|+|.|+|.+.+...    ...+..+.|.|...   |.+...+...+.+|++++|.|.+.+. .+.+.|+|++..+.
T Consensus        70 -~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~  147 (257)
T 1b6u_A           70 -MQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS-YDMYHLSREGEAHE  147 (257)
T ss_dssp             -CTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSC-CSEEEEEETTSSCE
T ss_pred             -CcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCC-CcEEEEEECCcccC
Confidence             99999999999986431    22346677888643   44443344568899999999999875 46899999998765


Q ss_pred             CCcceEEe----cCCeEEEEecccCCCCcEEEEEEEeCC----CCCccceEEEEeecCCccccC-CCCCccCCCCeeeEE
Q psy14532        155 LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQ----GRSSSQNVHISVTVPPKIAPF-EFQPDLHSGDRAGVQ  225 (258)
Q Consensus       155 ~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~~~----~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~  225 (258)
                      ........    .++.|.|.+++   |+|.|+|.+.+..    ....+..+.|.|..+|..... +.......|..+.|.
T Consensus       148 ~~~~~~~~~~~~~~~~l~I~~v~---D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~  224 (257)
T 1b6u_A          148 RRFSAGPKVNGTFQADFPLGPAT---HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLH  224 (257)
T ss_dssp             ECCBCBCCSSSCCBEEEEEEECC---SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------
T ss_pred             cccccccccCCceeEEEEecccc---cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEE
Confidence            33211111    24578998885   9999999999753    224567889999988765522 222345669999999


Q ss_pred             EEeccCCCCceeEEEECCEe
Q psy14532        226 CLVTKGDPPLTISWLKNGLP  245 (258)
Q Consensus       226 C~~~~~~p~~~~~W~~~g~~  245 (258)
                      |.+  +.+...+.|..-+-.
T Consensus       225 ~~~--~~~~~~~~~~~~~~~  242 (257)
T 1b6u_A          225 AAA--EQKLISEEDLNLDLV  242 (257)
T ss_dssp             --------------------
T ss_pred             EEE--cchHHHHHHhhhhhc
Confidence            987  667778899864433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.93  E-value=3.6e-25  Score=167.54  Aligned_cols=182  Identities=24%  Similarity=0.408  Sum_probs=137.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+..... .+                .....++.|.|.++
T Consensus       100 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~----------------~~~~~~~~L~i~~~  162 (291)
T 1qz1_A          100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD-VR----------------FIVLSNNYLQIRGI  162 (291)
T ss_dssp             CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCC-TT----------------EEECTTSCEEETTC
T ss_pred             cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCC-ce----------------EEEccCCcEEEccC
Confidence            46666677778899999999999999988899999999876643311 11                11224568999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccC---CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPM---GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +..|+|.|+|.+.+..+. .....+.|.|..+|.+...   ....+..|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus       163 -~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~  241 (291)
T 1qz1_A          163 -KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE  241 (291)
T ss_dssp             -CGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC-
T ss_pred             -ccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCC
Confidence             999999999999986533 3336667777666654432   23456789999999999999999999999998876553


Q ss_pred             ----ceEEec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        158 ----RQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       158 ----~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                          +..... ...|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       242 ~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~V~~  290 (291)
T 1qz1_A          242 EDDEKHIFSDDSSELTIRNVDK-NDEAEYVCIAENKAGE-QDASIHLKVFA  290 (291)
T ss_dssp             -CCSSEEECTTSCEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             CCCcceEEcCCCcEEEEEecCh-hcCEEEEEEEEeCCCc-eEEEEEEEEEc
Confidence                333333 34799999997 9999999999999884 55667777653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.93  E-value=5.3e-25  Score=167.77  Aligned_cols=183  Identities=26%  Similarity=0.437  Sum_probs=131.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.......+.                ....+++|.|.++ 
T Consensus       109 p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~----------------~~~~~~~L~i~~~-  171 (304)
T 2yd9_A          109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRI----------------KQLRSGALQIESS-  171 (304)
T ss_dssp             CEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSE----------------EECTTSCEEECSC-
T ss_pred             CeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceE----------------EeCCCeEEEEccC-
Confidence            66777777888999999999999999999999999999877543211111                1224568999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEec---CCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR  158 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~  158 (258)
                      +..|+|.|+|.+.+..+...+....|.|..   +|.+. .+....+..|+.+.|.|.+.|.|.+.+.|++++..+.....
T Consensus       172 ~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~  251 (304)
T 2yd9_A          172 EETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD  251 (304)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSS
T ss_pred             CcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccc
Confidence            999999999999998876653435555542   23322 34456688999999999999999999999999988765543


Q ss_pred             eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        159 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       159 ~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                      .   ..+.+.|.-... +|+|.|+|.|.|..|. ....+.|.|..++..
T Consensus       252 ~---~~~~~~L~i~~~-~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          252 M---PVGRNVLELTDV-KDSANYTCVAMSSLGV-IEAVAQITVKSLPKA  295 (304)
T ss_dssp             C---CBSEEEEEECSC-CSCEEEEEEEEETTEE-EEEEEEEC-------
T ss_pred             c---cCCcEEEEEccc-ccCEEEEEEEEeCCCc-EEEEEEEEEecCccc
Confidence            2   233433333344 6899999999999884 456777777766543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=158.33  Aligned_cols=178  Identities=24%  Similarity=0.387  Sum_probs=129.6

Q ss_pred             ceeeceeeeecCCCceEEEEE-EeecCC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCI-ATGNPT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      ....+.++.+.+|+++.|.|. +.+.|. +.+.|++++..+.........                ....+++|.|.++ 
T Consensus        11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~----------------~~~~~~~L~i~~v-   73 (201)
T 3s97_C           11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF----------------VSQTNGNLYIANV-   73 (201)
T ss_dssp             CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEE----------------ECTTTCCEEESSC-
T ss_pred             CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeE----------------EEcCCCeEEECcC-
Confidence            344557788999999999999 788888 899999988665422111111                1123578999999 


Q ss_pred             cCCCceEEEEEEEeCCcceee--ceEEEEEecC-------C-eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcc
Q psy14532         83 KDHDRGVYWCTATNKQGRSSS--QNVHISVTGA-------P-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ  152 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~~-------~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~  152 (258)
                      +.+|+|.|+|.+.+..+....  ..+.+.+...       | .........+..|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        74 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~  153 (201)
T 3s97_C           74 EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP  153 (201)
T ss_dssp             CGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBC
T ss_pred             CcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCc
Confidence            999999999999986654431  3344444321       1 11223466788999999999999999999999999987


Q ss_pred             cCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        153 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       153 ~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +..... .....+.|.|.++.. +|.|.|+|.+.|..+. .+..+.|.|.
T Consensus       154 ~~~~~~-~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~-~~~~~~l~V~  200 (201)
T 3s97_C          154 MPSTAE-ISTSGAVLKIFNIQL-EDEGIYECEAENIRGK-DKHQARIYVQ  200 (201)
T ss_dssp             CCTTCE-EETTTTEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             CCCcee-ecCCCCEEEEccCCh-hhCEEEEEEEEecCCc-eeeeEEEEEe
Confidence            764422 233567899999997 9999999999998873 4556666654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.93  E-value=5.4e-25  Score=176.88  Aligned_cols=236  Identities=17%  Similarity=0.290  Sum_probs=143.7

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|.  +.......  .....+........+..|..+..     ..+|.
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (457)
T 1hzh_H            5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMG--WINPYNGNKEFSAKFQDRVTFTADTSANTAYME   82 (457)
T ss_dssp             EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEE--EEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEE--EEecCCCceecCccccCceEEEEeCCCCEEEEE
Confidence            445678899999999999998765  668999984  22110000  00000000001111223333322     24799


Q ss_pred             EeecccCCCceEEEEEEEeCCc---------c--eeeceEEEEEec----CCeec-cCCCcceecCCcEEEEeeeCcc-c
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG---------R--SSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYLGCPVAGY-P  140 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~  140 (258)
                      |.++ +.+|+|.|+|.+.+..+         .  .......|.|..    +|.+. ......+.+|+.+.|.|.+.+. |
T Consensus        83 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  161 (457)
T 1hzh_H           83 LRSL-RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  161 (457)
T ss_dssp             ECSC-CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBS
T ss_pred             ECCC-CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeC
Confidence            9999 99999999999998754         1  122455677764    33322 2233446789999999999886 6


Q ss_pred             C-ceEEEEeCCcccCCCcceE-EecCC------eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee----------
Q psy14532        141 I-ESITWQKGVQQLPLNRRQK-VFPNG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT----------  202 (258)
Q Consensus       141 ~-~~i~W~~~~~~~~~~~~~~-~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~----------  202 (258)
                      . +.+.|++++..+....... ...++      .|.|.++.. +| |.|+|.|.|..+. ......+.+.          
T Consensus       162 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~~~~~  238 (457)
T 1hzh_H          162 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPSN-TKVDKKAEPKSCDKTHTCPP  238 (457)
T ss_dssp             CCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGG-GT-SCCEEEEEEGGGT-EEEEEECCCCCSCSSCSCCS
T ss_pred             CCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEeccccc-CC-ceEEEEEEeCCCC-cceeEEecccCCCcccccCC
Confidence            4 7999999886543211111 11222      588888886 78 9999999997542 1122222221          


Q ss_pred             -------cCCcccc-CCCCC-ccCCCCeeeEEEEeccCC-CC---ceeEEEECCEecccc
Q psy14532        203 -------VPPKIAP-FEFQP-DLHSGDRAGVQCLVTKGD-PP---LTISWLKNGLPILSA  249 (258)
Q Consensus       203 -------~~p~~~~-~~~~~-~~~~g~~~~l~C~~~~~~-p~---~~~~W~~~g~~l~~~  249 (258)
                             .+|.+.. .+... .+.+|+.+.|.|.+. +. |.   +.|.|+++|+.+...
T Consensus       239 ~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~-g~~p~p~~~~i~W~k~~~~~~~~  297 (457)
T 1hzh_H          239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVV-DVSHEDPEVKFNWYVDGVEVHNA  297 (457)
T ss_dssp             CCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEE-CCCTTCCCCEEEEEETTEEECCC
T ss_pred             CCCccccCCceEEeECcCchhhcccCCceEEEEEEE-cccCCCCceEEEEEeCCcccccc
Confidence                   1222211 11111 267899999999995 65 43   399999999887643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.93  E-value=2.5e-25  Score=160.89  Aligned_cols=195  Identities=18%  Similarity=0.234  Sum_probs=130.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceec-ccceee--ccccccceeee------
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRI-GEARVQ--QLPLNRRQKVF------   71 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~------   71 (258)
                      |...+..+.+.+|++++|.|.+.+.+    .+.+.|++.+........ ..... +.....  ...+..+..+.      
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   81 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQ-VIILYSGDKIYDNYYPDLKGRVHFTSNDVKS   81 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSE-EEEEEETTEEECCCCGGGTTTEEESCSCGGG
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCce-EEEEEeCCeEccccCCccccceEEeccCccC
Confidence            44556778899999999999998765    469999984321100000 00000 000000  11122222222      


Q ss_pred             eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeee-CcccCceEEEEeC
Q psy14532         72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPV-AGYPIESITWQKG  149 (258)
Q Consensus        72 ~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~  149 (258)
                      .+++|.|.++ +.+|+|.|+|.+.+..+... ..+.|.|..+|.... .....+..|+.+.|.|.+ .+.|.+.+.|+++
T Consensus        82 ~~~~L~i~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  159 (214)
T 3jz7_A           82 GDASINVTNL-QLSDIGTYQCKVKKAPGVAN-KKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL  159 (214)
T ss_dssp             TBCCEEECSC-CGGGCEEEEEEEEETTEEEE-EEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred             CcccEEEccC-ChhhCeEEEEEEEeCCCccc-cEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence            3578999999 99999999999999877665 788899987765432 223347789999999999 7899999999996


Q ss_pred             CcccCCCc-ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecC
Q psy14532        150 VQQLPLNR-RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP  204 (258)
Q Consensus       150 ~~~~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~  204 (258)
                      +....... ......++.|.|.++.. +|+|.|+|.|.|..+. .+..+.|.|..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P  213 (214)
T 3jz7_A          160 SDSQTMPTPWLAEMTSPVISVKNASS-EYSGTYSCTVQNRVGS-DQCMLRLDVVPP  213 (214)
T ss_dssp             STTCCCCGGGGGGTTSSEEEECSCCG-GGCEEEEEEEECSSCE-EEEEEEECCBCC
T ss_pred             CCCCccCccceeccCCCEEEEecCCH-HHCEEEEEEEEcCCCc-EEEEEEEEEeCC
Confidence            54332221 12223456899999997 9999999999999884 456677777643

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=4.7e-25  Score=176.57  Aligned_cols=238  Identities=18%  Similarity=0.261  Sum_probs=144.9

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      ...+..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+....  .....+........+..|..+..     +++|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVA--YISNGGGSTYYPDTVKGRFTISRDNAKNTLYL   81 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEE--EECTTSSCEECCGGGTTTEEEEEETTTTEEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEE--EEecCCCceecCcccCCceEEEEeCCCCeEEE
Confidence            3456678899999999999998753  5689999852  2110000  00000000000111222333322     3579


Q ss_pred             EEeecccCCCceEEEEEEEeCCcc--eeeceEEEEEec----CCeec-cCCCcceecCCcEEEEeeeCcc-cCc-eEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYLGCPVAGY-PIE-SITWQ  147 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~  147 (258)
                      .|.++ +.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+. ......+.+|+.+.|.|.+.+. |.+ .+.|+
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  160 (444)
T 1igt_B           82 QMSRL-KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN  160 (444)
T ss_dssp             EECSC-CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEG
T ss_pred             EECCC-CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEe
Confidence            99999 999999999999987543  222456777763    23222 2223345789999999999884 766 99999


Q ss_pred             eCCcccCCC--cce----EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe------------------ec
Q psy14532        148 KGVQQLPLN--RRQ----KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV------------------TV  203 (258)
Q Consensus       148 ~~~~~~~~~--~~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v------------------~~  203 (258)
                      +++..+...  ...    .....+.|.|.++.. +| |.|+|.|.|..+.. .....+.+                  ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~  237 (444)
T 1igt_B          161 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLG  237 (444)
T ss_dssp             GGTBCTTEEECCCEEETTEEEEEEEEEECSTTT-TT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCC
T ss_pred             cCCCCCCeEecCccccCCcEEEEEEEEEchhhc-CC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCC
Confidence            987753211  000    111224577878876 78 99999999987642 11222211                  11


Q ss_pred             CCccccCCCCCc--cCCCCeeeEEEEeccCC--C-CceeEEEECCEecccc
Q psy14532        204 PPKIAPFEFQPD--LHSGDRAGVQCLVTKGD--P-PLTISWLKNGLPILSA  249 (258)
Q Consensus       204 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~--p-~~~~~W~~~g~~l~~~  249 (258)
                      +|.+...+....  +..|+.++|.|.+.+..  | .+.|.|+++|..+...
T Consensus       238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~  288 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTA  288 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSST
T ss_pred             CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCc
Confidence            333322222222  58899999999996332  3 4799999999988643

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.93  E-value=1.7e-25  Score=161.25  Aligned_cols=191  Identities=23%  Similarity=0.341  Sum_probs=135.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ++.+...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.......      .. ....+..+... ..++|.|.++
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~------~~-~~~~~~~r~~~-~~~~L~i~~~   75 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYN------NK-ITASYEDRVTF-LPTGITFKSV   75 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEET------TE-ECTTTTTTCEE-ETTEEECSCC
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEec------Cc-cCccccCceEe-eccEEEEeeC
Confidence            4556777888899999999999999988888999999764421110000      00 00111122222 2478999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeecc-CCCcceecCCcEEEEeee-CcccCceEEEEeCCcccCCCcc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRR  158 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~  158 (258)
                       +..|+|.|+|.+.+..+. .....+.|.|..+|.... .....+..|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus        76 -~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~  154 (209)
T 1nbq_A           76 -TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK  154 (209)
T ss_dssp             -CTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred             -CHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccc
Confidence             999999999999997652 233677888877765433 334568899999999997 8899999999999887764332


Q ss_pred             ---------eEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEEEee
Q psy14532        159 ---------QKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVT  202 (258)
Q Consensus       159 ---------~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~  202 (258)
                               +.+ ...+.|.|.++.. +|.|.|+|.|.|..+.. .+..+.|.|.
T Consensus       155 ~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          155 STRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             SSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             cceeeeccceEEcCCcceEEEEeccc-cCCeEEEEEEeCCcCcccccccEEEEEe
Confidence                     111 1456899999997 99999999999998865 3555555543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.93  E-value=6.1e-25  Score=157.42  Aligned_cols=179  Identities=23%  Similarity=0.285  Sum_probs=123.3

Q ss_pred             ceeeceeeee-cCCCceEEEEEEeecCCCeEEEeeCC-EeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          5 LIYKFIQQTL-QPGPPVSLKCIATGNPTPHISWKLDG-YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         5 ~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      +...|.+..+ .+|++++|.|.+.|.|.+.+.|++.. ..+..     ...               ....+++|.|.++ 
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~-----~~~---------------~~~~~~~L~I~~v-   61 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-----KVT---------------NEGTTSTLTMNPV-   61 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-----EEE---------------EETTEEEEEESSC-
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc-----eEE---------------EcCCccEEEECcC-
Confidence            4455555444 59999999999999888999999842 21110     000               0012346999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcc-cC--ceEEEEeCCcccCCCcc
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGY-PI--ESITWQKGVQQLPLNRR  158 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~--~~i~W~~~~~~~~~~~~  158 (258)
                      +.+|+|.|+|.+.+..+... ..+.|.|..+|... ......+.+|+.++|.|.+.+. |.  +.+.|++++..+.....
T Consensus        62 ~~~D~G~Y~C~a~n~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~  140 (202)
T 1vca_A           62 SFGNEHSYLCTATCESRKLE-KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF  140 (202)
T ss_dssp             CGGGCSEEEEEEEETTEEEE-EEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEEC
T ss_pred             CHHHCEEEEEEEEECCceEe-eEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccc
Confidence            99999999999999877655 78889998665321 1222568899999999999875 33  37999999876643211


Q ss_pred             eE-------EecCCeEEEEecccCCCCcEEEEEEEeCCCCC------ccceEEEEeecCCc
Q psy14532        159 QK-------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRS------SSQNVHISVTVPPK  206 (258)
Q Consensus       159 ~~-------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~------~~~~~~l~v~~~p~  206 (258)
                      ..       ......|.|..... +|+|.|+|.|.|..+..      .+..+.|.|.++|.
T Consensus       141 ~~~~~~~~~~~~~~~l~i~~~~~-d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          141 LEDADRKSLETKSLEVTFTPVIE-DIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CSCCSSCCCEEEEEEEEECCCGG-GTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             ccccCcCcceEEEEEEEEEeeec-cCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            00       11123356666664 88999999999987642      34577888888875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=3.2e-26  Score=182.85  Aligned_cols=230  Identities=11%  Similarity=0.175  Sum_probs=146.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+........+.+|+.++|.|.+.+. |.+ .|.|++++..+.... .... ..         .  ......+.|.|.
T Consensus       119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~-~~~~-~~---------~--~~~~~~s~L~i~  185 (434)
T 1igy_B          119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT-FPAV-LQ---------S--DLYTLSSSVTVP  185 (434)
T ss_dssp             CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEE-CCCE-EC---------S--SCEEEEEEEEEE
T ss_pred             CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEe-cCce-ec---------C--CcEEEEEEEEEc
Confidence            3555433333446799999999999886 766 999999876432110 0000 00         0  011123468898


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec-------------CCeeccCCCcc--eecCCcEEEEeeeCccc----
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG-------------APFVRPMGNVS--AIAGEPLYLGCPVAGYP----  140 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-------------~~~~~~~~~~~--~~~g~~~~l~C~~~~~~----  140 (258)
                      ++ +.+| |.|+|.+.+..+... ....+.+..             +.....++...  +.+|+.+.|.|.+.+.+    
T Consensus       186 ~~-~~~d-g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~  262 (434)
T 1igy_B          186 SS-PRPS-ETVTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDP  262 (434)
T ss_dssp             TT-TTTS-SCCEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCC
T ss_pred             ch-hcCC-CcEEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCC
Confidence            88 8788 999999999877643 222332210             11111122222  78899999999998873    


Q ss_pred             CceEEEEeCCcccCCCcce--------EEecCCeEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEE--EeecCCcccc
Q psy14532        141 IESITWQKGVQQLPLNRRQ--------KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHI--SVTVPPKIAP  209 (258)
Q Consensus       141 ~~~i~W~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~  209 (258)
                      .+.+.|++++..+......        .....+.|.|.++.. +|.|.|+|.|.|..+.. ....+.+  .+..+|.+..
T Consensus       263 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~  341 (434)
T 1igy_B          263 EVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW-LNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYT  341 (434)
T ss_dssp             CCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHH-HHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEE
T ss_pred             CeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHc-cCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEE
Confidence            3589999998766432110        011234689999987 89999999999987643 2223332  3455676655


Q ss_pred             CCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEeccc
Q psy14532        210 FEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  248 (258)
Q Consensus       210 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~  248 (258)
                      .+.......|+.++|.|.+.+.+|+ +.|.|++||+.+..
T Consensus       342 ~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  381 (434)
T 1igy_B          342 IPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN  381 (434)
T ss_dssp             ECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSC
T ss_pred             ECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCC
Confidence            5444334567889999999544554 58999999998854

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.93  E-value=5.6e-26  Score=193.52  Aligned_cols=219  Identities=25%  Similarity=0.349  Sum_probs=61.3

Q ss_pred             eeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         11 QQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ...+.+|++++|.|.+.+.  +...+.|++++..+............        ..........++|.|.++ +.+|+|
T Consensus       233 ~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v-~~~d~G  303 (772)
T 3v2a_R          233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT--------QSGSEMKKFLSTLTIDGV-TRSDQG  303 (772)
T ss_dssp             CEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-------------CCCEEEEEEEEESSC-CSTTCS
T ss_pred             ceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccc--------cccccceEEEEEEEECcC-CcCCCe
Confidence            3678999999999999874  45689999988765432110000000        000011123457999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEecCCeecc----CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVTGAPFVRP----MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN  164 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  164 (258)
                      .|+|.+.+..+... ..+.|.|..+|.+..    .....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  .+...
T Consensus       304 ~Y~C~~~~~~~~~~-~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~--~~~~~  380 (772)
T 3v2a_R          304 LYTCAASSGLMTKK-NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH--TIKAG  380 (772)
T ss_dssp             EEEEEEECSSCEEE-EEEEEEEECCCC-----------------------------------------------------
T ss_pred             EEEEEEEcCCccee-EEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCc--eEccc
Confidence            99999999877655 788889988775443    234567889999999999999999999999998776532  22345


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEEEeecCCccccCCC---CCccCCCCeeeEEEEeccCCCCce-eEE
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEF---QPDLHSGDRAGVQCLVTKGDPPLT-ISW  239 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~-~~W  239 (258)
                      ..|.|.++.. +|+|.|+|.+.|..+.. .+..+.|.|..+|.+.....   ...+..|+.++|.|.+ .+.|.+. +.|
T Consensus       381 ~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W  458 (772)
T 3v2a_R          381 HVLTIMEVSE-RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHW  458 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEEecCCh-hcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEe-ccCCCCcEEEE
Confidence            7899999997 99999999999987643 24567778888887643311   1237889999999999 6888886 999


Q ss_pred             EECC
Q psy14532        240 LKNG  243 (258)
Q Consensus       240 ~~~g  243 (258)
                      ++++
T Consensus       459 ~~~~  462 (772)
T 3v2a_R          459 YWQL  462 (772)
T ss_dssp             ----
T ss_pred             EEcC
Confidence            9974

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.92  E-value=1.2e-25  Score=174.41  Aligned_cols=179  Identities=21%  Similarity=0.259  Sum_probs=139.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+.....  .                .....+++|.|.++
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~----------------~~~~~~~~L~i~~v  219 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--K----------------SGGLPSLGLTLANV  219 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--C----------------CCCSSEEEEEEESC
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc--c----------------ceecccceEEEeeC
Confidence            68888888999999999999999999999999999998765432210  0                01123568999999


Q ss_pred             ccCCCce-EEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE
Q psy14532         82 QKDHDRG-VYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        82 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~  160 (258)
                       +..|+| .|+|.+.+..+... ..+.|.|..+|.+   .......|+.+.|.|.+.|.|.|.+.|++++..+.......
T Consensus       220 -~~~D~G~~Y~C~a~n~~g~~~-~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~  294 (347)
T 2ifg_A          220 -TSDLNRKNVTCWAENDVGRAE-VSVQVNVSFPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF  294 (347)
T ss_dssp             -CSTTTTCCEEECCEETTEECC-EEECCCCBEEEEE---EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEE
T ss_pred             -ChHHCCCeEEEEEEcCCCCEE-EEEEEEEcCCCee---eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCccee
Confidence             999999 99999999887665 6777777666654   12235678999999999999999999999998877543322


Q ss_pred             E----------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        161 V----------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       161 ~----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      .          ...++|.|.++.. +|+|.|+|.|.|..| ..+..+.|.|..+|
T Consensus       295 ~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          295 TEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFG-QASASIMAAFMDNP  347 (347)
T ss_dssp             EEECCCCTTCCCEEEEEEESSCCG-GGCEEEEEEEEETTE-EEEEEEEECSCCCC
T ss_pred             eEEEeecCCCcccceEEEECCCCc-ccCceEEEEEecCCC-ceeeEEEEEecCCC
Confidence            2          1245699999997 999999999999988 45566777776654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.92  E-value=4.4e-24  Score=158.05  Aligned_cols=191  Identities=21%  Similarity=0.338  Sum_probs=126.7

Q ss_pred             ceeeceeeeecCCCceEEEEEEee---cCCCeEEEeeCCEeCcCCcccc-cee----------cccceeeccccccceee
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGDRHEN-KNR----------IGEARVQQLPLNRRQKV   70 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~   70 (258)
                      +...+.++.+.+|++++|.|.+.+   .+.+.+.|+|++.......... ...          ..........+..|..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            344556788999999999999987   6788999999864321000000 000          00000001112222222


Q ss_pred             ee--CCcEEEeecccCCCceEEEEEEEeCCccee----eceEEEEEecC---Ceec--cCCCcceecCCcEEEEeeeCcc
Q psy14532         71 FP--NGTLLIENVQKDHDRGVYWCTATNKQGRSS----SQNVHISVTGA---PFVR--PMGNVSAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        71 ~~--~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---~~~~--~~~~~~~~~g~~~~l~C~~~~~  139 (258)
                      ..  +.+|.|.++ +.+|+|.|+|.+.+..+...    ...+.|.|..+   +.+.  ......+.+|+.+.|.|.+.+.
T Consensus        85 ~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~  163 (250)
T 2fbo_J           85 ANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDC  163 (250)
T ss_dssp             SCTTSCCEEECSC-CGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESC
T ss_pred             ccCCcceEEEeeC-ChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCC
Confidence            22  468999999 99999999999998765431    25778888764   2222  2334566779999999999998


Q ss_pred             cCceEEEEeCCcccCCCc------------------------ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        140 PIESITWQKGVQQLPLNR------------------------RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       140 ~~~~i~W~~~~~~~~~~~------------------------~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      |.|.+.|++++..+....                        .........|.|.++.. +|+|.|+|.|.|..+...+.
T Consensus       164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~g~~  242 (250)
T 2fbo_J          164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKI-TDAGRVWCELATGQGELDAD  242 (250)
T ss_dssp             TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCG-GGCEEEEEEEESSSSGGGEE
T ss_pred             CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCc-ccCEEEEEEecCCccccCcc
Confidence            888999999987664321                        11122446899999997 99999999999977644433


Q ss_pred             eE
Q psy14532        196 NV  197 (258)
Q Consensus       196 ~~  197 (258)
                      ..
T Consensus       243 ~~  244 (250)
T 2fbo_J          243 RS  244 (250)
T ss_dssp             EE
T ss_pred             ce
Confidence            33

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=155.82  Aligned_cols=168  Identities=20%  Similarity=0.279  Sum_probs=122.1

Q ss_pred             CCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         16 PGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      .++.+.|.|.+.+. |.+.+.|+|++..+...   .++.+.             ......+|.|.++ +.+|+|.|+|.+
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~---~~~~~~-------------~~~~~~~L~i~~v-~~~D~G~Y~C~~   78 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS---DRVKTG-------------VTGEQIWLQINEP-TPNDKGKYVMEL   78 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCC---SSEEEE-------------EETTEEEEEEESC-CGGGCEEEEEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCC---CeEEEE-------------EeCCEEEEEECCC-CcccCEEEEEEE
Confidence            56666777776664 57899999999887654   222111             0001235999999 999999999999


Q ss_pred             EeCCcceeeceEEEEEec---------------------CCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcc
Q psy14532         95 TNKQGRSSSQNVHISVTG---------------------APFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ  152 (258)
Q Consensus        95 ~~~~~~~~~~~~~l~v~~---------------------~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~  152 (258)
                      .+..+... ..+.|.+..                     ++... .+....+..|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        79 ~n~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~  157 (212)
T 2r15_A           79 FDGKTGHQ-KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA  157 (212)
T ss_dssp             ECSSCEEE-EEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE
T ss_pred             ecCCcceE-EEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE
Confidence            99776655 555565432                     22222 23346788999999999999999999999999988


Q ss_pred             cCCCcceEEecC----CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        153 LPLNRRQKVFPN----GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       153 ~~~~~~~~~~~~----~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      +....+..+...    ..|.|.++.. +|.|.|+|.|.|..+. .+..+.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~  210 (212)
T 2r15_A          158 LAQTDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGS-ETSDFTVSVFI  210 (212)
T ss_dssp             ECCCSSEEEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             CccCCCEEEEEcCCCEEEEEEcCcch-HHCeEEEEEEEcCCCc-EEEEEEEEEEc
Confidence            876665554332    2799999997 9999999999999874 45666777664

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=5.1e-24  Score=156.55  Aligned_cols=181  Identities=17%  Similarity=0.175  Sum_probs=128.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.. .+.+|++|+|.|.+.+ +...+.|+|++..+.....  ..               .....+++|.|.++
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~--~~---------------~~~~~~~~L~I~~v   67 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP--KP---------------PERINKVKFYIPDM   67 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC--SS---------------CTTCCEEEEEECSC
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc--cc---------------cCCcceeEEEecCC
Confidence            6778777776 7899999999999864 3568999999876532100  00               00112457999999


Q ss_pred             ccCCCceEEEEEEEeCCcc-eeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc
Q psy14532         82 QKDHDRGVYWCTATNKQGR-SSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~  157 (258)
                       +.+|+|.|+|.+.+..+. ..+..+.|.|..   .|.+...+...+.+|+.++|.|.+.+. .+.+.|++++..+... 
T Consensus        68 -~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~-  144 (242)
T 1p6f_A           68 -NSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ-  144 (242)
T ss_dssp             -CGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE-
T ss_pred             -CcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc-
Confidence             999999999999875432 223667788864   344443334568899999999998764 4589999998876531 


Q ss_pred             ceEEecCCeEEEEecccCCCCcEEEEEEEeCC--CCCccceEEEEeecCC
Q psy14532        158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ--GRSSSQNVHISVTVPP  205 (258)
Q Consensus       158 ~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~--~~~~~~~~~l~v~~~p  205 (258)
                      .......+.|.|.+++. +|+|.|+|.+.+..  ....+..+.|.|...+
T Consensus       145 ~~~~~~~~~l~I~~v~~-~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          145 RGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             EEECSSEEEEEEEECCG-GGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             ccCCCceEEEEeCCCcc-ccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            11122446799999998 99999999999864  2345778888887644

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.92  E-value=5.5e-24  Score=153.85  Aligned_cols=177  Identities=17%  Similarity=0.183  Sum_probs=121.7

Q ss_pred             eceeeeecCC--CceEEEEEEeecCCCeEEEeeC---CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          8 KFIQQTLQPG--PPVSLKCIATGNPTPHISWKLD---GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         8 ~~~~~~~~~g--~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      .+..+.+.+|  ++++|.|.+.+ |.+.+.|++.   +..+...   ...                .....+.|.|.++ 
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~---~~~----------------~~~~~~~l~I~~v-   71 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG---NRI----------------SWDSKKGFTIPSY-   71 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS---SSC----------------EEETTTEEEEEGG-
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC---Ccc----------------cccCCccEEEccC-
Confidence            4578889999  99999999976 6689999884   5554432   111                1123457999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecC--Cee--ccCCCcceecCCcEEEEeeeCccc--CceEEEEeCCcccCCC
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGA--PFV--RPMGNVSAIAGEPLYLGCPVAGYP--IESITWQKGVQQLPLN  156 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--~~~--~~~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~  156 (258)
                      +.+|+|.|+|.+.+..+...+..+.|.|...  +.+  .+.....+.+|+.+.|.|.+.+.|  .+.+.|++++..+...
T Consensus        72 ~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~  151 (213)
T 2x1w_L           72 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK  151 (213)
T ss_dssp             GTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSE
T ss_pred             ChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceE
Confidence            9999999999999855444434577777542  212  223334788999999999998754  4589999988765432


Q ss_pred             cc-e-E---------EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        157 RR-Q-K---------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       157 ~~-~-~---------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                      .. . .         ....++|.|.++.. +|+|.|+|.|.|..+. .+..+.|.|..+|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          152 KLVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLMT-KKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEEECCCSSCSCEEEEEEEEESSCCG-GGCEEEEEEEECSSCE-EEEEEEEEEEC----
T ss_pred             EEeccccccccCccceeeeEEEEECCCCc-ccCEEEEEEEecCCCc-EEEEEEEEEeccccc
Confidence            11 0 0         11234699999998 9999999999999874 567888888887754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.92  E-value=2.3e-24  Score=173.19  Aligned_cols=231  Identities=15%  Similarity=0.202  Sum_probs=139.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+...+....+.+|++++|.|.+.+. |. +.|.|++++..+.... .......         .  ........|.|.
T Consensus       132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~-~~~~~~~---------~--~~~~~~s~L~i~  199 (457)
T 1hzh_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-FPAVLQS---------S--GLYSLSSVVTVP  199 (457)
T ss_dssp             CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEE-EEEEECT---------T--SCEEEEEEEEEC
T ss_pred             CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceE-cCceECC---------C--CCEEEEEEEEec
Confidence            3555444444557899999999999886 64 7999999986542110 0000000         0  001122468899


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec-----------------CCee-ccCCC-c-ceecCCcEEEEeeeCcc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG-----------------APFV-RPMGN-V-SAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----------------~~~~-~~~~~-~-~~~~g~~~~l~C~~~~~  139 (258)
                      ++ ..+| |.|+|.+.+..+... ....+.+..                 .|.+ ...+. . .+..|+.+.|.|.+.+.
T Consensus       200 ~~-~~~d-G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~  276 (457)
T 1hzh_H          200 SS-SLGT-QTYICNVNHKPSNTK-VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDV  276 (457)
T ss_dssp             SG-GGGT-SCCEEEEEEGGGTEE-EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECC
T ss_pred             cc-ccCC-ceEEEEEEeCCCCcc-eeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcc
Confidence            99 8888 999999999766543 223332211                 2222 11112 1 25679999999999887


Q ss_pred             cCc----eEEEEeCCcccCCCcc--eEEecCCeEEEEec---cc--CCCCcEEEEEEEeCCCCCccceEEEE----eecC
Q psy14532        140 PIE----SITWQKGVQQLPLNRR--QKVFPNGTLLIENV---QK--DHDRGVYWCTATNKQGRSSSQNVHIS----VTVP  204 (258)
Q Consensus       140 ~~~----~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~---~~--~~~~g~y~C~~~~~~~~~~~~~~~l~----v~~~  204 (258)
                      +++    .++|++++..+.....  .....++.+.+...   ..  .+|+|.|+|.|.|..+.. .....+.    +..+
T Consensus       277 ~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~  355 (457)
T 1hzh_H          277 SHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA-PIEKTISKAKGQPRE  355 (457)
T ss_dssp             CTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS-CEEEEECCCCCCCBC
T ss_pred             cCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC-cceEEEEcccCCCCC
Confidence            543    9999999987653321  12234556655532   23  134999999999865422 1222232    3456


Q ss_pred             CccccCCCCC-ccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        205 PKIAPFEFQP-DLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       205 p~~~~~~~~~-~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      |.+...+... .+..|+ +.|.|.+.+.+|+ +.|.|++||..+...
T Consensus       356 P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~  401 (457)
T 1hzh_H          356 PQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNY  401 (457)
T ss_dssp             CEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCE
T ss_pred             CeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcce
Confidence            6555443332 344455 9999999544444 599999999999654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.92  E-value=1.6e-23  Score=150.01  Aligned_cols=178  Identities=16%  Similarity=0.210  Sum_probs=120.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+.........               .....++.|.|.++
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~---------------~~~~~~~~l~I~~v   70 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEH---------------HDGVSKANFSISRM   70 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEE---------------ETTEEEEEEEESSC
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeec---------------CCCCceEEEEeccC
Confidence            577777665 67889999999999874 67799999988654321000000               00123467999999


Q ss_pred             ccCCCceEEEEEEEeCCc----ceeeceEEEEEecC---CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQG----RSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       +.+|+|.|+|.+.+...    ...+..+.|.|...   |.+...+...+.+|+.++|.|.+.+ +.+.+.|++++..+.
T Consensus        71 -~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  148 (201)
T 1nkr_A           71 -TQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHE  148 (201)
T ss_dssp             -CGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSC
T ss_pred             -CcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC-CCceEEEEECCcccC
Confidence             99999999999986431    22235677777643   3443333346889999999999986 567899999998765


Q ss_pred             CCcceEEe----cCCeEEEEecccCCCCcEEEEEEEeCC----CCCccceEEEEe
Q psy14532        155 LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQ----GRSSSQNVHISV  201 (258)
Q Consensus       155 ~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~~~----~~~~~~~~~l~v  201 (258)
                      ........    ..+.|.|.+++   |+|.|+|.+.+..    ....+..+.|.|
T Consensus       149 ~~~~~~~~~~~~~~~~L~i~~v~---d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          149 RRLPAGPKVNGTFQADFPLGPAT---HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EEEECEEEETTEEEEEEEEEECC---SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             cccccccccCCceEEEEEeCCcC---CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            43211111    14578998885   9999999998653    123345555554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.92  E-value=1.7e-23  Score=161.21  Aligned_cols=178  Identities=19%  Similarity=0.232  Sum_probs=129.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.+........+.+|+++.|.|.+.+.| .+.+.|+|++..+....  .++                 ...+++|.|.+
T Consensus       128 ~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~--~~~-----------------~~~~~~L~I~~  188 (329)
T 3oq3_B          128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDG--TKY-----------------SQSGQNLIIHN  188 (329)
T ss_dssp             CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSS--SSE-----------------EEETTEEEECS
T ss_pred             CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCC--ceE-----------------ecCCCEEEEee
Confidence            45555555556678899999999999988 89999999998874321  111                 11257899999


Q ss_pred             cccCCCceEEEEEEEeC--Cccee---eceEEEEEecCC----eeccCCCcceecCCcEEEEeeeCccc---Cc-eEEEE
Q psy14532         81 VQKDHDRGVYWCTATNK--QGRSS---SQNVHISVTGAP----FVRPMGNVSAIAGEPLYLGCPVAGYP---IE-SITWQ  147 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~--~~~~~---~~~~~l~v~~~~----~~~~~~~~~~~~g~~~~l~C~~~~~~---~~-~i~W~  147 (258)
                      + +.+|+|.|+|.+.|.  .+...   +..+.|.|..++    .+..+....+..|+.+.|.|.+.+.|   .+ .+.|+
T Consensus       189 v-~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~  267 (329)
T 3oq3_B          189 P-ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE  267 (329)
T ss_dssp             C-CGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEE
T ss_pred             c-ChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEE
Confidence            9 999999999999986  43322   244778887665    22244556788999999999999887   67 89999


Q ss_pred             eCCccc-CCCcceEEe-------cCCeEEEEecccCCCCc-EEEEEEEeCCCCCccceEEEEe
Q psy14532        148 KGVQQL-PLNRRQKVF-------PNGTLLIENVQKDHDRG-VYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       148 ~~~~~~-~~~~~~~~~-------~~~~l~i~~~~~~~~~g-~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      +++..+ .........       ..+.|.|.++.. +|.| .|+|.|.|..|. ....+.|.|
T Consensus       268 ~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~~Y~C~a~N~~G~-~~~~~~l~v  328 (329)
T 3oq3_B          268 NPSGWIIGLDFGVYSILTSSGGITEATLYFENVTE-EYIGNTYTCRGHNYYFD-KTLTTTVVL  328 (329)
T ss_dssp             CTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCG-GGTTCEEEEEEECSSCE-EEEEEEEEE
T ss_pred             ECCeeeeccCCceeeeecccCceeEeEEEEEeccH-HHCCCcEEEEEEecCCc-eEEEEEEEe
Confidence            998874 333222111       345799999997 9999 999999999874 334444443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.92  E-value=5.1e-24  Score=181.49  Aligned_cols=219  Identities=19%  Similarity=0.261  Sum_probs=120.2

Q ss_pred             eceeeeecCC--CceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          8 KFIQQTLQPG--PPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         8 ~~~~~~~~~g--~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      .+..+.+.+|  ++++|.|.+.+ |.+.+.|+++  +..+.....  ..                .......|.|.++ +
T Consensus       132 ~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~--~~----------------~~~~~~~l~i~~~-~  191 (772)
T 3v2a_R          132 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN--RI----------------SWDSKKGFTIPSY-M  191 (772)
T ss_dssp             CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSS--SC----------------EEETTTEEEEEGG-G
T ss_pred             cceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCc--ee----------------ecCCCCCeEecCC-C
Confidence            3456778889  89999999876 6789999997  554432210  00                1122456899999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecCCe----eccCCCcceecCCcEEEEeeeCc--ccCceEEEEeCCcccCCCc
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGAPF----VRPMGNVSAIAGEPLYLGCPVAG--YPIESITWQKGVQQLPLNR  157 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~----~~~~~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~~~~~~~~  157 (258)
                      ..|.|.|+|.+.+......+..+.+.+...+.    +.+.....+.+|+.+.|.|.+.+  .+.+.+.|++++..+....
T Consensus       192 ~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~  271 (772)
T 3v2a_R          192 ISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK  271 (772)
T ss_dssp             TTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------
T ss_pred             hhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCce
Confidence            99999999999976544443445555543321    22233457889999999999986  4467899999887654322


Q ss_pred             ceE-----------EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC---CCCccCCCCeee
Q psy14532        158 RQK-----------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE---FQPDLHSGDRAG  223 (258)
Q Consensus       158 ~~~-----------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~  223 (258)
                      ...           ......|.|.++.. +|+|.|+|.+.+..+ ..+..+.|.|..+|.+...+   ....+.+|+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~  349 (772)
T 3v2a_R          272 LVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVR  349 (772)
T ss_dssp             CEEEEC-----CCCEEEEEEEEESSCCS-TTCSEEEEEEECSSC-EEEEEEEEEEECCCC--------------------
T ss_pred             eeeccccccccccceEEEEEEEECcCCc-CCCeEEEEEEEcCCc-ceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEE
Confidence            111           11234699999997 999999999998876 35677888888888665432   345688999999


Q ss_pred             EEEEeccCCCCceeEEEECCEecccc
Q psy14532        224 VQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       224 l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      |.|.+ .+.|.+.+.|+++|+.+...
T Consensus       350 l~C~~-~~~p~~~v~W~~~g~~l~~~  374 (772)
T 3v2a_R          350 IPAKY-LGYPPPEIKWYKNGIPLESN  374 (772)
T ss_dssp             --------------------------
T ss_pred             EEEEE-eeeCCCeEEEEECCEeCCCC
Confidence            99999 58899999999999988764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=5.5e-25  Score=175.71  Aligned_cols=234  Identities=17%  Similarity=0.278  Sum_probs=142.0

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee-----eCCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~   77 (258)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|++  ..+.......  ..+........+..|..+.     .+.+|.
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~--~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYIN--PSSVYTNYNQRFKDKATLTRDRSSNTANIH   81 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECC--SSSCCCCCCGGGTTTEECCBCGGGCBBCEE
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEc--cCCCceecCccccccEEEEEECCCCEEEEE
Confidence            445677899999999999998753  5689999863  2110000000  0000000001112222222     235799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEec----CCeec-cCCCcceecCCcEEEEeeeCcc-cCc-eEEEEeCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKGV  150 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~~  150 (258)
                      |.++ +.+|+|.|+|.+.+..+... ....|.|..    +|.+. ......+.+|+.+.|.|.+.+. |.+ .+.|++++
T Consensus        82 I~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~  159 (434)
T 1igy_B           82 LSSL-TSDDSAVYYCVREGEVPYWG-QGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  159 (434)
T ss_dssp             ECSB-CGGGCSEECCCCSSSSCCCC-CCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTT
T ss_pred             ECCC-ChHHCEEEEEEEEccccccC-CceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCC
Confidence            9999 99999999999988543333 455677753    23222 1223345789999999999885 666 99999988


Q ss_pred             cccCCCcc------eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec---------C---CccccCCC
Q psy14532        151 QQLPLNRR------QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---------P---PKIAPFEF  212 (258)
Q Consensus       151 ~~~~~~~~------~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~---------~---p~~~~~~~  212 (258)
                      ........      -.....+.|.|.++.. +| |.|+|.|.|..+... ....+.+..         .   |.+...+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p  236 (434)
T 1igy_B          160 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PS-ETVTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIFPP  236 (434)
T ss_dssp             BCSSEEECCCEECSSCEEEEEEEEEETTTT-TS-SCCEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEECC
T ss_pred             cCCCeEecCceecCCcEEEEEEEEEcchhc-CC-CcEEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEeCC
Confidence            75321100      0011124578888876 77 999999999876421 222222210         1   22222222


Q ss_pred             CCc--cCCCCeeeEEEEeccCC-C---CceeEEEECCEeccc
Q psy14532        213 QPD--LHSGDRAGVQCLVTKGD-P---PLTISWLKNGLPILS  248 (258)
Q Consensus       213 ~~~--~~~g~~~~l~C~~~~~~-p---~~~~~W~~~g~~l~~  248 (258)
                      ...  +.+|+.+.|.|.+. +. |   .+.|.|+++|..+..
T Consensus       237 ~~~~~v~~G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~~~~  277 (434)
T 1igy_B          237 KPKDTLLITVTPKVTCVVV-DISKDDPEVQFSWFVDNVEVHT  277 (434)
T ss_dssp             CHHHHHSTTSCCEEEEEEC-CCCSSCCCCCBCBBSSSCCBCC
T ss_pred             ChHHhcccCCCcEEEEEEe-ccccCCCCeEEEEEeCCcccCC
Confidence            222  78999999999996 55 3   468999999988754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=1.6e-23  Score=169.03  Aligned_cols=219  Identities=16%  Similarity=0.236  Sum_probs=136.9

Q ss_pred             cCCCceEEEEEEeec-CC-C-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         15 QPGPPVSLKCIATGN-PT-P-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~-~~-~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      .+|+.++|.|.+.+. |. + .|.|++++....... .......          ..........|.|.++ ...|+|.|+
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~-~~~~~~~----------~~g~~~~~s~L~i~~~-~~~d~g~Y~  206 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARN-FPPSQDA----------SGDLYTTSSQLTLPAT-QCLAGKSVT  206 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEe-CCceecC----------CCCcEEEEEEEEechh-HcCCCceEE
Confidence            689999999999986 65 4 999999874321100 0000000          0001111235788888 888999999


Q ss_pred             EEEEeCCcceeeceEEEEEe------------------cCCee--ccCCCcceecCCcEEEEeeeCcccC---ceEEEEe
Q psy14532         92 CTATNKQGRSSSQNVHISVT------------------GAPFV--RPMGNVSAIAGEPLYLGCPVAGYPI---ESITWQK  148 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~v~------------------~~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~---~~i~W~~  148 (258)
                      |.+.+..+......+.|.|.                  ..+.+  ..+....+.+|+.+.|.|.+.+.++   +.++| +
T Consensus       207 C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~  285 (475)
T 1iga_A          207 CHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T  285 (475)
T ss_pred             EEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C
Confidence            99999876432233333231                  12221  1122233578999999999988644   69999 4


Q ss_pred             CCcccCCCc--ceE------EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE---eecCCccccCCCC-Ccc
Q psy14532        149 GVQQLPLNR--RQK------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS---VTVPPKIAPFEFQ-PDL  216 (258)
Q Consensus       149 ~~~~~~~~~--~~~------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~-~~~  216 (258)
                       +..+....  ...      ....+.|.|.++.. +|+|.|+|.|.|..+.. .....|.   +..+|.+...+.. ..+
T Consensus       286 -~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~P~v~~~~~~~~~v  362 (475)
T 1iga_A          286 -PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW-NHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEEL  362 (475)
T ss_pred             -CCCcCCccccCceECCCCCEEEEEEEEEchHHh-ccCCcEEEEEEcCCCCC-ceEEEeecCCCCCCCeEEEECCChHHh
Confidence             33332111  000      11234689999987 99999999999987643 2222332   2456665544332 236


Q ss_pred             CCCCeeeEEEEeccCCC-CceeEEEECCEecccc
Q psy14532        217 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSA  249 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~  249 (258)
                      ..|+.+.|.|.+.+.+| .+.|.|++||+.|..+
T Consensus       363 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          363 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             ccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            78999999999954455 3699999999998765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=8.5e-24  Score=163.13  Aligned_cols=176  Identities=27%  Similarity=0.421  Sum_probs=131.2

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      ...+.+|+++.|.|.+.+.|.+.+.|++++..+..........               ......+|.|.++ +..|+|.|
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~---------------~~~~~~~L~i~~v-~~~d~G~Y  195 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK---------------LRHQQWSLVMESV-VPSDRGNY  195 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCC---------------CCTTTTEEEECSC-CGGGCCCE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccccee---------------cccceEEEEECCC-CcccCEEE
Confidence            4568899999999999988889999999988765442111111               1113567999999 99999999


Q ss_pred             EEEEEeCCcceeeceEEEEEecC----Ceec--cCCCcceecCCcEEEEeeeCcccCceEEEEe----CCcccCCCcce-
Q psy14532         91 WCTATNKQGRSSSQNVHISVTGA----PFVR--PMGNVSAIAGEPLYLGCPVAGYPIESITWQK----GVQQLPLNRRQ-  159 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v~~~----~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~----~~~~~~~~~~~-  159 (258)
                      +|.+.+..+... ..+.|.|...    |.+.  .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+...... 
T Consensus       196 ~C~a~n~~g~~~-~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~  274 (334)
T 1ry7_B          196 TCVVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY  274 (334)
T ss_dssp             EEEEEETTEEEE-EEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBC
T ss_pred             EEEEEeCCCCEE-EEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCee
Confidence            999999887765 7778888753    2222  2345678899999999999999999999999    56555433221 


Q ss_pred             -EEec----------CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        160 -KVFP----------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       160 -~~~~----------~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                       .+..          ...|.|.++.. +|+|.|+|.|.|..|. ....+.|.|...|
T Consensus       275 ~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~~  329 (334)
T 1ry7_B          275 VTVLKTAGANTTDKELEVLSLHNVTF-EDAGEYTCLAGNSIGF-SHHSAWLVVLPAE  329 (334)
T ss_dssp             CCCCCCSSCSCSCTTCCCEEECSCCT-TSCSEEEEEEEESSCC-EEEEEEEEEECSC
T ss_pred             EEEeecCccccccccccEEEEccCCH-HHCEEEEEEEeCCCCe-EEEEEEEEEEECC
Confidence             1111          13799999997 9999999999999884 5567778887654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=152.49  Aligned_cols=192  Identities=16%  Similarity=0.215  Sum_probs=124.6

Q ss_pred             eeceeeeecCCCceEEEEEEeecCCC---eEEEeeCCEeCcCCcc-----ccceecccceeeccccccceeeeeCCcEEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRH-----ENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ..+..+.+.+|++++|.|.+.+.+.+   .|.|+|++..+.....     ...............+........+++|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            35567889999999999999887655   4899997654432100     000001000000111111112223568999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCC--eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN  156 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~  156 (258)
                      .++ +.+|+|.|.|.+.+..+........+.+..++  .........+..|+.+.+.|.+.+.|.+.|+|++++..+...
T Consensus        84 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~  162 (218)
T 4frw_A           84 RNA-VQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS  162 (218)
T ss_dssp             SSC-CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             eec-cHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccC
Confidence            999 99999999999988766554344445554433  222344456677899999999999999999999998876544


Q ss_pred             cceEEe----cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        157 RRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       157 ~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ......    ..+.|.|.++.. +|+|.|+|.|.|..+.. ...+.+.|
T Consensus       163 ~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~g~~-~~~~t~~v  209 (218)
T 4frw_A          163 RSFKHSRSAAVTSEFHLVPSRS-MNGQPLTCVVSHPGLLQ-DQRITHIL  209 (218)
T ss_dssp             EEEECSSSEEEEEEEEECCCGG-GTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred             ceEecCCcEEEEEEEEEeeCCH-HhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence            332221    123688988887 99999999999998743 33344443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.91  E-value=3e-23  Score=167.48  Aligned_cols=235  Identities=19%  Similarity=0.286  Sum_probs=139.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee-----eCCc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGT   75 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   75 (258)
                      .+..+..+.+.+|++++|.|.+.+.+  ...+.|||..  .....-.  .....+........+..|..+.     .+.+
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMG--WISAGTGNTKYSQKFRGRVTFTRDTSATTAY   81 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEE--EEecCCCceecCcccCCceEEEEcCCCCeEE
Confidence            34567788999999999999998753  5689999853  2110000  0000000000011112222222     2357


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcc-----eeeceEEEEEec----CCeeccCCCcceecCCcEEEEeeeCcc-cC-c-e
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGR-----SSSQNVHISVTG----APFVRPMGNVSAIAGEPLYLGCPVAGY-PI-E-S  143 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~  143 (258)
                      |.|.++ +.+|+|.|.|.+.+..+.     .....+.|.|..    +|.+.......+.+|+.+.|.|.+.+. |. + .
T Consensus        82 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~  160 (475)
T 1iga_A           82 MGLSSL-RPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLS  160 (475)
T ss_pred             EEECCC-ChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceE
Confidence            999999 999999999999987642     122455677763    233322222233689999999999886 65 4 9


Q ss_pred             EEEEeCCcccCCCcceEE--ecC------CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee-------------
Q psy14532        144 ITWQKGVQQLPLNRRQKV--FPN------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT-------------  202 (258)
Q Consensus       144 i~W~~~~~~~~~~~~~~~--~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~-------------  202 (258)
                      |.|++++...........  ..+      +.|.|..+.. +|+|.|+|.|.|..+......+.+.|.             
T Consensus       161 v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~  239 (475)
T 1iga_A          161 VTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQC-LAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPT  239 (475)
T ss_pred             EEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHc-CCCceEEEEEEECCCCceeeeEecccccCccccccccccc
Confidence            999988753221110000  112      2467777765 899999999999876333333433331             


Q ss_pred             -----cCCccccC-CCCCccCCCCeeeEEEEeccCCCC---ceeEEEECCEec
Q psy14532        203 -----VPPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPP---LTISWLKNGLPI  246 (258)
Q Consensus       203 -----~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~l  246 (258)
                           .+|.+... +....+.+|+.+.|.|.+. +.++   +.|.|  ++..+
T Consensus       240 ~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~-g~~p~~~~~i~W--~~~~~  289 (475)
T 1iga_A          240 PSPSCCHPRLSLHRPALEDLLLGSEANLTCTLT-GLRDASGVTFTW--TPSSG  289 (475)
T ss_pred             CCCCCCCcEEEEcCCChHHhccCCceEEEEEEE-cccCCCceEEEE--CCCCc
Confidence                 12222111 2222358899999999995 5433   69999  44444

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.91  E-value=1.3e-23  Score=157.13  Aligned_cols=211  Identities=16%  Similarity=0.270  Sum_probs=123.6

Q ss_pred             CcceeeceeeeecCCCceEEEEEEe---ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceee-----eeCC
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIAT---GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNG   74 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   74 (258)
                      +.+...+..+.+.+|++++|.|.+.   +.+.+.+.|++++......... .............+..+..+     ..++
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYV-LFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEE-EEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEE-EEEcCCCcccCccccCceEEeecCCCCEE
Confidence            5567778889999999999999987   5666789999965422211000 00000001111122222222     2347


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcce-eeceEEEEEecCCeeccCCCcceecCCcEEEEeee---CcccCceEEEEeCC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV---AGYPIESITWQKGV  150 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~i~W~~~~  150 (258)
                      +|.|.++ +.+|+|.|+|.+.+..+.. ....+.|.|...    .+....+..|+.+.|.|.+   .+.|.+.+.|++++
T Consensus        85 ~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~----~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           85 SLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELWVLPE----EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             CEEECSC-CGGGCEEEEEEEEETTCCCEEEEEEEEEEECC----CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             EEEECCC-CHhHCEEEEEEEEecCCcceEEEEEEEEEecc----CCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            8999999 9999999999999865443 335566666522    2345678899999999999   66788999999943


Q ss_pred             ccc-CC---------------------CcceEE-----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe-e
Q psy14532        151 QQL-PL---------------------NRRQKV-----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-T  202 (258)
Q Consensus       151 ~~~-~~---------------------~~~~~~-----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v-~  202 (258)
                      ... ..                     ..+..+     ...+.|.|.++.. +|+|.|+|.|.|..+ ..+..+.|.| .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g-~~~~~~~l~V~~  237 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKE-SDQGIYTCSIYVGKL-ESRKTIVLHVVQ  237 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCG-GGCEEEEEEEEETTE-EEEEEEEEEEEC
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCCh-hhCeEEEEEEEcCCc-eEEEEEEEEEEc
Confidence            321 10                     011111     2356799999997 999999999999776 4556777777 4


Q ss_pred             cCCccccCCCCCccCCCCe
Q psy14532        203 VPPKIAPFEFQPDLHSGDR  221 (258)
Q Consensus       203 ~~p~~~~~~~~~~~~~g~~  221 (258)
                      .+|.+...+....+..|+.
T Consensus       238 ~~p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          238 DEFQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             C------------------
T ss_pred             CCCeeeeCCCCCCCCccee
Confidence            4555555555555555543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.91  E-value=4.6e-24  Score=150.75  Aligned_cols=173  Identities=20%  Similarity=0.239  Sum_probs=121.9

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee------eCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF------PNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~   84 (258)
                      .+.+.+|++++|.|.+.+.+.+.+.|++++..+...........     ....+..+....      .+.+|.|.++ +.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~~L~i~~v-~~   77 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK-----GPSKLNDRADSRRSLWDQGNFPLIIKNL-KI   77 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEE-----CSCTTGGGEECCGGGGGGTBCCEEECSC-CG
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEec-----CChhhCCccccccccccCCeEEEEEecC-CH
Confidence            46788999999999998888889999998752111100000000     001111111111      1445999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN  164 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  164 (258)
                      +|+|.|+|.+.+..+     .+.|.|...   ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+       ....
T Consensus        78 ~D~G~Y~C~~~~~~~-----~~~l~V~~~---~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~-------~~~~  142 (184)
T 2ny1_B           78 EDSDTYICEVEDQKE-----EVQLLVFGL---TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGG  142 (184)
T ss_dssp             GGCEEEEEEETTEEE-----EEEEEEEEE---EESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE-------EEES
T ss_pred             HHCEEEEEEEEcCCC-----cEEEEEEEe---cCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc-------ccCc
Confidence            999999999987643     345555532   2234457889999999999988899999999987654       2356


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      +.|.|.++.. +|+|.|+|.|.|..+ ..+..+.|.|...|.
T Consensus       143 ~~L~i~~v~~-~d~G~Y~C~a~n~~~-~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          143 KTLSVSQLEL-QDSGTWTCTVLQNQK-KVEFKIDIVVLAFQK  182 (184)
T ss_dssp             SEEEESSCCG-GGCEEEEEEEEETTE-EEEEEEEEEEECCCC
T ss_pred             eEEEEecCCc-CCCeEEEEEEEECCc-eEEEEEEEEEEecCC
Confidence            7899999997 999999999998765 455677787776654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.91  E-value=7.2e-24  Score=160.39  Aligned_cols=181  Identities=20%  Similarity=0.263  Sum_probs=131.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCC-CeEEEe-eCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWK-LDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+...+.+..+.+|+++.|.|.+.+ |. +.+.|+ +++..+...   .++                ....++.|.|.
T Consensus        91 ~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~---~~~----------------~~~~~~~L~i~  150 (290)
T 2o26_X           91 PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD---LTF----------------VPNPKAGITIK  150 (290)
T ss_dssp             SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT---CEE----------------EEETTTEEEEE
T ss_pred             CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC---Cce----------------eeCCCCCEEEe
Confidence            344445566778889999999999985 67 899995 577665432   111                12234689999


Q ss_pred             ecccCCCce-EEEEEEEeCCcceeeceEEEEEe----cCCeec-cCCCcceecCCcEEEEeeeCcccCce-EEEEeCCcc
Q psy14532         80 NVQKDHDRG-VYWCTATNKQGRSSSQNVHISVT----GAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQ  152 (258)
Q Consensus        80 ~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~  152 (258)
                      ++ +.+|+| .|+|.+.+..+...+..+.|.|.    .+|.+. .+....+.+|+.+.|.|.+.+.|.+. +.|++++..
T Consensus       151 ~v-~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          151 NV-KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             SC-CGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSS
T ss_pred             cc-cHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCC
Confidence            99 999999 99999999865544456788876    445443 34455788999999999999988886 999999877


Q ss_pred             c----CCCcce------EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        153 L----PLNRRQ------KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       153 ~----~~~~~~------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      +    ......      .....+.|.|.++.. +|+|.|+|.|.|..+. .+..+.|.|..+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P  290 (290)
T 2o26_X          230 PQHIAQVKHNSWHRGDFNYERQETLTISSARV-DDSGVFMCYANNTFGS-ANVTTTLKVVEKG  290 (290)
T ss_dssp             EEECCCEECCEEEEETTEEEEEEEEEESSCCS-SSCEEEEEEEECSSCE-EEEEEEECC----
T ss_pred             CccceeecccccccCceeeEEEEEEEEcCCCc-ccCeEEEEEEeCCCCc-EEEEEEEEEEeCC
Confidence            3    322221      223345799999997 9999999999999884 4566777776554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.91  E-value=2e-23  Score=150.95  Aligned_cols=178  Identities=16%  Similarity=0.230  Sum_probs=120.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee---eeeCCcEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK---VFPNGTLL   77 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~   77 (258)
                      |.+...+ .+.+.+|++|+|.|.+.+.+.+.+.|+|.  +......       +............+..   ...+.+|.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~L~   73 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLV-------IYEDNRRPSGIPDHFSGSNSGNMATLT   73 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEE-------EBTTTBCCTTSCTTEEEEEETTEEEEE
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEE-------EEECCccCCCccCcEEEEecCCEEEEE
Confidence            5666777 88999999999999999888899999983  2111100       0000000000111111   22345799


Q ss_pred             EeecccCCCceEEEEEEEeCCc--ceeeceEEEEEe----cCCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVT----GAPFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESITWQK  148 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~  148 (258)
                      |.++ +.+|+|.|+|.+.+..+  ......+.|.|.    .+|.+.. .....+..|+.+.|.|.+.+. |+ +.+.|++
T Consensus        74 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k  152 (213)
T 3mj8_L           74 ISKA-QAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEA  152 (213)
T ss_dssp             ESSC-CGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             ECCC-ChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEc
Confidence            9999 99999999999999877  233467788887    4444332 334445579999999999885 44 4999999


Q ss_pred             CCcccCCCcc--------eEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        149 GVQQLPLNRR--------QKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       149 ~~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ++..+.....        ......+.|.|.++.. +|.|.|+|.|.|..+
T Consensus       153 ~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~  201 (213)
T 3mj8_L          153 DGTPITQGVKTTQPSKSDSKYMATSYLTMTADAW-KSRNTFICKVTHGGN  201 (213)
T ss_dssp             TTEEECTTEEECCCEEETTEEEEEEEEEEESHHH-HSCSCEEEEEEETTE
T ss_pred             CCcccCCCcccCCcCccCCcEEEEEEEEEeHHHc-CCCCEEEEEEEECCc
Confidence            9987754211        1111224588888887 899999999999764

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.91  E-value=2.8e-23  Score=151.56  Aligned_cols=187  Identities=17%  Similarity=0.183  Sum_probs=112.8

Q ss_pred             eeeeecCCCceEEEEEEeecCCC---eEEEeeCCEeCcCCccccceecccceeeccccccceee------eeCCcEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGTLLIEN   80 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~   80 (258)
                      .++.+.+|++|+|.|.+.+.+.+   .|.|+|++...............  ......+..|...      ..+.+|.|.+
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~--~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVE--DRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECG--GGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcc--cccCccccceEEEecccccCCeEEEEEee
Confidence            45778999999999998765443   79999976422110000000000  0001111111111      1245799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccCceEEEEeCCccc-CCCcc
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQL-PLNRR  158 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~-~~~~~  158 (258)
                      + +..|+|.|+|.+.+..+... ..+.+.+..... .......+..|+.+.|.|.+.+ .|.|.|+|++++..+ .....
T Consensus        90 v-~~~D~G~Y~C~a~n~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~  166 (226)
T 4f80_A           90 V-TASDSGKYLCYFQDGDFYEK-ALVELKVAALGS-DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA  166 (226)
T ss_dssp             C-CGGGCEEEEEEEEETTEEEE-EEEEEEEEBCCC-CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEEC
T ss_pred             C-chHHCeeEEEEEECCCcEEE-EEEEEeecccee-cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCce
Confidence            9 99999999999999877655 555555543332 2233456778999999999987 589999999965443 32222


Q ss_pred             -eEEecCCeE---EEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        159 -QKVFPNGTL---LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       159 -~~~~~~~~l---~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                       .....++.+   .+..+.. +|+|.|+|.|.|..+. ....+.|.|..
T Consensus       167 ~~~~~~~g~~~v~s~l~v~~-~d~G~YtC~a~N~~g~-~~~~~~v~v~e  213 (226)
T 4f80_A          167 PVVADGVGLYAVAASVIMRG-SSGEGVSCTIRSSLLG-LEKTASISIAD  213 (226)
T ss_dssp             CCEECTTSCEEEEEEEEECC-----CEEEEEEETTTT-EEEEEEECCCT
T ss_pred             EEEECCCCcEEEEEEEEech-hcCcEEEEEEEeCCCC-eEEEEEEEECC
Confidence             222334433   3445665 8999999999999873 44556666643

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.91  E-value=5.2e-24  Score=149.23  Aligned_cols=159  Identities=15%  Similarity=0.162  Sum_probs=112.6

Q ss_pred             eeeeecCCCceEEEEEEee--cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532         10 IQQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ..+.+.+|++|+|.|....  .+.+.|.|+|++..+..... ...        ......+..+..+++|.|.++ +.+|+
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~-~~~--------~~~~~~r~~~~~~gsL~I~~v-~~~D~   73 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKR-KMK--------PFLKSGAFEILANGDLKIKNL-TRDDS   73 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEET-TSC--------CEESSTTEEECTTSCEEESSC-CGGGC
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcC-CCe--------ecCCCCeEEECCCCcEEEccc-ccccC
Confidence            3467889999999995332  45668999999875542211 000        001123444456788999999 99999


Q ss_pred             eEEEEEEEeCCcce-eeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCe
Q psy14532         88 GVYWCTATNKQGRS-SSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT  166 (258)
Q Consensus        88 G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~  166 (258)
                      |.|+|.+.+..+.. ....+.|.|..++.    .......+..+.|.|.+.+.|.+.+.|++++..+....        .
T Consensus        74 G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~--------~  141 (176)
T 1hng_A           74 GTYNVTVYSTNGTRILNKALDLRILEMVS----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR--------Q  141 (176)
T ss_dssp             EEEEEEEEETTCCEEEEEEEEEEEECCCC----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES--------S
T ss_pred             EEEEEEEEeCCCCEEEEEEEEEEEeCCCC----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC--------c
Confidence            99999999988875 33677888876421    11222334569999999999999999999988765332        2


Q ss_pred             EEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        167 LLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       167 l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.|.++.. +|.|.|+|.|.|..+.
T Consensus       142 ~~i~~~~~-~d~G~Y~C~a~N~~g~  165 (176)
T 1hng_A          142 KTMSYQWT-NLRAPFKCKAVNRVSQ  165 (176)
T ss_dssp             SEEEEECS-CCSSCEEEEEEETTEE
T ss_pred             EEEEEEEc-cCCeEEEEEEEecCCC
Confidence            44556766 9999999999999873

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.91  E-value=7.6e-23  Score=148.75  Aligned_cols=192  Identities=16%  Similarity=0.291  Sum_probs=120.7

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC-----CCeEEEeeCCEeCcCCccccceecccceeeccccccceeee------eCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF------PNG   74 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   74 (258)
                      ...+..+.+.+|++++|.|.+.+.|     ...+.|+|++..+..... .....   ......+..+..+.      .+.
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~-g~~~~---~~~~~~~~~r~~~~~~~~~~~~~   80 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVH-GEEDL---KVQHSSYRQRARLLKDQLSLGNA   80 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEET-TEECS---SSSCGGGSSSEEECHHHHTTTEE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeC-Ccccc---ccccccccCceEEccccccCCEE
Confidence            3455667889999999999987654     348999998744322110 00000   00011122222222      134


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCC-CcceecCCcEEEEeeeCcccCceEEEEeC-Ccc
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPLYLGCPVAGYPIESITWQKG-VQQ  152 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~i~W~~~-~~~  152 (258)
                      +|.|.++ +.+|+|.|+|.+.+ .+... ..+.|.|..++...... ...+..|+.+.|.|.+.|.|.+.+.|+++ +..
T Consensus        81 ~L~I~~v-~~~D~G~Y~C~~~~-~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           81 ALQITDV-KLQDAGVYRCMISY-GGADY-KRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             EEEESSC-CGGGCEEEEEEEES-SSEEE-EEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             EEEEcCc-ccccCeEEEEEEEe-CCCce-eEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            7999999 99999999999998 44444 67888888665332211 12456799999999999999999999998 554


Q ss_pred             cCCCcceEE--ecCCeEEEE---ecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        153 LPLNRRQKV--FPNGTLLIE---NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       153 ~~~~~~~~~--~~~~~l~i~---~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      +........  ..++.+.+.   .+.. .|.|.|+|.|.|..+ .....+.|.|..+|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~v~~-~d~g~Y~C~a~n~~g-~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          158 LSGKTTTTNSKREEKLFNVTSTLRINT-TTNEIFYCTFRRLDP-EENHTAELVIPELPL  214 (222)
T ss_dssp             ECCEEEEEECC----CEEEEEEEEEEC-CTTCEEEEEEEETTT-TEEEEEEEECCCC--
T ss_pred             ecCccceEEEcCCCCCEEEEEEEEEec-cCCcEEEEEEEeCcc-ceeeEEEEEecCCcc
Confidence            443322211  222333222   4554 899999999999988 455667777766554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.91  E-value=8.8e-23  Score=147.52  Aligned_cols=178  Identities=19%  Similarity=0.224  Sum_probs=119.0

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i   78 (258)
                      .+...+..+.+.+|++++|.|.+.+.+.+.+.|+|++  ..+...      .... ......+..+....   .+.+|.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~------~~~~-~~~~~~~~~r~~~~~~~~~~~L~I   75 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLL------IKYA-SQSISGIPSRFSGSGSGTDFTLSI   75 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEE------EETT-TEECTTSCTTEEEEEETTEEEEEE
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEE------EEEc-ccccccccccEEEEcCCCEEEEEE
Confidence            3556688899999999999999998888899999853  111000      0000 00000111122221   2347999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEEEEeCCcc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKGVQQ  152 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~~~~~  152 (258)
                      .++ +.+|+|.|+|.+.+..+........|.|..   +|.+.. ........|+.+.|.|.+.+ .|.+ .+.|++++..
T Consensus        76 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~  154 (213)
T 3d9a_L           76 NSV-ETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  154 (213)
T ss_dssp             SSC-CGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCC-ChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCc
Confidence            999 999999999999988765443455677764   343332 33334457899999999987 5554 8999999987


Q ss_pred             cCCCcceE--E--------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        153 LPLNRRQK--V--------FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       153 ~~~~~~~~--~--------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.......  .        ...+.|.|.++.. +|+|.|+|.|.|...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~  201 (213)
T 3d9a_L          155 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTS  201 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEEEECTTC
T ss_pred             CcceeeecCCCccCCCCCEEEEEEEEEecccc-CCCCEEEEEEEEccC
Confidence            76541110  0        1123789999987 899999999999764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.91  E-value=5e-23  Score=157.53  Aligned_cols=170  Identities=21%  Similarity=0.286  Sum_probs=125.4

Q ss_pred             eeeecCCCceEEEEEE------eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCIA------TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      ...+.+|+++.|.|.+      .+.|.+.+.|+|++..+....  .+                 ....+++|.|.++ +.
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~--~~-----------------~~~~~~~L~i~~v-~~  171 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--IH-----------------FSGVKDRLIVMNV-AE  171 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS--SS-----------------EEEETTEEEESSC-CG
T ss_pred             ceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc--ce-----------------EeecCceEEEEec-ee
Confidence            3568899999999998      778889999999998875431  11                 1223568999999 99


Q ss_pred             CCceEEEEEEE-eCCccee--eceEEEEEe-----cCCeeccCCC--cceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         85 HDRGVYWCTAT-NKQGRSS--SQNVHISVT-----GAPFVRPMGN--VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        85 ~d~G~Y~C~~~-~~~~~~~--~~~~~l~v~-----~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                      .|+|.|+|.+. +..+...  ...+.+.+.     .+|.+.....  ..+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       172 ~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~  251 (315)
T 1itb_B          172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID  251 (315)
T ss_dssp             GGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECC
T ss_pred             hhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECC
Confidence            99999999999 6666553  244444444     3444433332  467899999999999999999999999998876


Q ss_pred             CCcceE------Ee---------cCCeEEEEecccCCC-CcEEEEEEEeCCCCCccceEEEEee
Q psy14532        155 LNRRQK------VF---------PNGTLLIENVQKDHD-RGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       155 ~~~~~~------~~---------~~~~l~i~~~~~~~~-~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      ......      ..         ..+.|.|.++.. +| +|.|+|.|.|..|. ....+.|.|.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~-~~~~~~l~v~  313 (315)
T 1itb_B          252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIES-RFYKHPFTCFAKNTHGI-DAAYIQLIYP  313 (315)
T ss_dssp             TTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG-GGGTSCEEEEEECTTCC-EEEEEEEECC
T ss_pred             cccccccccceeeeccCCCceeEEEEEEEEeecCH-HHcCCceEEEEecCCCc-eeEEEEEEec
Confidence            543211      11         123799999997 89 99999999999884 4455666553

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.90  E-value=5.9e-24  Score=150.37  Aligned_cols=143  Identities=18%  Similarity=0.325  Sum_probs=106.0

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee-cccCCCceEE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN-VQKDHDRGVY   90 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~d~G~Y   90 (258)
                      ..+.+|++++|.|.+.+ + +.+.|+|+|..+...                         .+++|.|.+ + +.+|+|.|
T Consensus         9 ~v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~-------------------------~~~~L~I~~~~-~~~D~G~Y   60 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-D-ENLKWEKNGQELPQK-------------------------HDKHLVLQDFS-EVEDSGYY   60 (186)
T ss_dssp             EEEEETTEEEEECSSCC-C-TTCEEEETTEEECSC-------------------------CCSEEEEESCC-TTTSCEEE
T ss_pred             EEEeCCcEEEEEEeCCC-C-CceEEEECCEECCCC-------------------------CCCEEEECCCC-ccccCEEE
Confidence            34568999999999887 3 359999999887643                         145799999 9 99999999


Q ss_pred             EEEEEeCCcceeeceEEEEEecC--Cee----------------cc---C--CC---cceecCCcEEEEeeeCcccCceE
Q psy14532         91 WCTATNKQGRSSSQNVHISVTGA--PFV----------------RP---M--GN---VSAIAGEPLYLGCPVAGYPIESI  144 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v~~~--~~~----------------~~---~--~~---~~~~~g~~~~l~C~~~~~~~~~i  144 (258)
                      +|.+.+..+... ..+.+.|...  +..                ..   .  ..   ..+..|+.+.|.|.+   |.+.+
T Consensus        61 ~C~a~n~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i  136 (186)
T 1jbj_A           61 VCYTPASNKNTY-LYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTI  136 (186)
T ss_dssp             EEECSSCCCCCC-EEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCE
T ss_pred             EEEEEeCCCcEE-EEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeE
Confidence            999999877633 4444433321  110                00   0  00   123489999999998   77899


Q ss_pred             EEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        145 TWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      .|++++..+.....    ..+.|.|.++.. +|+|.|+|.|.|..++
T Consensus       137 ~W~k~g~~i~~~~~----~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          137 KWLKDGSIISPLNA----TKNTWNLGNNAK-DPRGTYQCQGAKETSN  178 (186)
T ss_dssp             EEEETTEECCCSSC----CSSCCEEEETTS-CCEEEEEEEESSCEEE
T ss_pred             EEEECCEECcccCC----CcceEEECCCCc-CcCEEEEEEEEcCcCC
Confidence            99999988764322    556899999997 9999999999998763

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.90  E-value=2.3e-23  Score=152.39  Aligned_cols=175  Identities=20%  Similarity=0.325  Sum_probs=117.6

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCC-CeEEEeeCCEeCcCCccccceecccceeecccccccee----------eeeCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----------VFPNG   74 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~   74 (258)
                      +..+.++.+.+|+++.|.|.+.+.+. +.+.|++++......    .  +.........+..+..          +..++
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~----~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~   77 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP----R--LASAEMQGSELQVTMHDTRGRSPPYQLDSQG   77 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCC----E--EEEEEEETTEEEEEECCCSCCSSCCEECTTC
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeE----E--EEeccccCCccccccccccccccccccCCCc
Confidence            34667888999999999999988874 799999865321100    0  0000000000111111          34456


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCee---cc-CCCcceecCCcE-EEEeee-CcccCceEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV---RP-MGNVSAIAGEPL-YLGCPV-AGYPIESITWQK  148 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~---~~-~~~~~~~~g~~~-~l~C~~-~~~~~~~i~W~~  148 (258)
                      +|.|.++ +.+|+|.|+|.+.+.........+.|.|..+|..   .. .....+..|+.+ .|.|.+ .+.|.+.+.|++
T Consensus        78 ~L~i~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~  156 (231)
T 2pet_A           78 RLVLAEA-QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR  156 (231)
T ss_dssp             CEEESSC-CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE
T ss_pred             eEEEccc-CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE
Confidence            7999999 9999999999999987333347888888866432   21 333456688887 999999 889999999999


Q ss_pred             CCcccCCCc----ceEEec------C------CeEEEEecccCCCCcEEEEEEEeC
Q psy14532        149 GVQQLPLNR----RQKVFP------N------GTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       149 ~~~~~~~~~----~~~~~~------~------~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      ++..+....    +..+..      +      +.|.|.... .+|.|.|+|.|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~-~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK-DDRDASFHCAAHYS  211 (231)
T ss_dssp             TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCG-GGGGCEEEEEEEEE
T ss_pred             CCccCccccccccceeecceeEecCCCeEEEEEEEEEecch-hhCCceEEEEEEcC
Confidence            998776544    222211      1      346666444 36799999999995

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.90  E-value=2.4e-23  Score=149.34  Aligned_cols=155  Identities=17%  Similarity=0.305  Sum_probs=110.0

Q ss_pred             ecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEE
Q psy14532         14 LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        14 ~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      +.+|++|+|.|.+   +.+.+.|+|+|..+....                       ..+++|.|.++ +.+|+|.|+|.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-----------------------~~~~~L~i~~v-~~~DsG~Y~C~   67 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-----------------------EDKKKWNLGSN-AKDPRGMYQCK   67 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-----------------------SSCCCEEEEEG-GGCCEEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-----------------------CCCCeEEeCCC-CcCCCEEEEEE
Confidence            4689999999988   678999999998764210                       02468999999 99999999999


Q ss_pred             EEeCCcceeeceEEEEEe---------------------------c----CCeeccCCCcceecCCcEEEEeeeCcccCc
Q psy14532         94 ATNKQGRSSSQNVHISVT---------------------------G----APFVRPMGNVSAIAGEPLYLGCPVAGYPIE  142 (258)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~---------------------------~----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  142 (258)
                      +.+...    ..+.|.+.                           .    .+.+...+.....+|+.+.|.|.  +.|.+
T Consensus        68 ~~~~~s----~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p  141 (204)
T 1sy6_A           68 GSQNKS----KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGS  141 (204)
T ss_dssp             SSSSCC----CCEEEEEEC------------------------------------CCCCEEEEETTEEEEECS--CCCSS
T ss_pred             ecCCCC----eeEEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCC
Confidence            644221    23444444                           0    11111112222338999999999  67888


Q ss_pred             eEEEEeCCcccCCC--cceEEecCCeEEEEec-ccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        143 SITWQKGVQQLPLN--RRQKVFPNGTLLIENV-QKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       143 ~i~W~~~~~~~~~~--~~~~~~~~~~l~i~~~-~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      .+.|++++..+...  .......++.|.|.++ .. +|+|.|+|.|.|..+...+..+.|.+.
T Consensus       142 ~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~-~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          142 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL-EQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             CEEEEETTEEESCCTTCTTEEEETTEEEETTCCHH-HHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             ceEEEECCEECCCccCCceEecCCCEEEEeeCCcc-ccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            99999999876543  1222235789999999 87 999999999999988555666666653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.90  E-value=8.2e-24  Score=161.98  Aligned_cols=174  Identities=20%  Similarity=0.299  Sum_probs=129.3

Q ss_pred             eeeeecCCCceEEEEEEee----------cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~----------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ....+.+|+.+.|.|.+.+          .|.+.+.|++++..+...   .++...             .......|.|.
T Consensus       106 ~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~-------------~~~~~~~L~i~  169 (317)
T 2y25_A          106 CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS---DRVKTG-------------VTGEQIWLQIN  169 (317)
T ss_dssp             HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC---SSEEEE-------------ECSSEEEEEEE
T ss_pred             CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC---CCeEEe-------------ccCCEEEEEEC
Confidence            4455678999999998876          678899999998877543   111111             00012359999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec--------------------CC-eecc-CCCcceecCCcEEEEeeeC
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG--------------------AP-FVRP-MGNVSAIAGEPLYLGCPVA  137 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~~-~~~~-~~~~~~~~g~~~~l~C~~~  137 (258)
                      ++ +..|+|.|+|.+.+..+... ..+.|.+..                    .+ .... +....+..|+.+.|.|.+.
T Consensus       170 ~~-~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~  247 (317)
T 2y25_A          170 EP-TPNDKGKYVMELFDGKTGHQ-KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW  247 (317)
T ss_dssp             SC-CGGGCEEEEEEEECSSCEEE-EEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEE
T ss_pred             cC-CcccCeeEEEEEEeCCceEE-EEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEe
Confidence            99 99999999999999877665 555555431                    11 1111 3345788999999999999


Q ss_pred             cccCceEEEEeCCcccCCCcceEEecC-C---eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        138 GYPIESITWQKGVQQLPLNRRQKVFPN-G---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       138 ~~~~~~i~W~~~~~~~~~~~~~~~~~~-~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      +.|.+.+.|++++..+....+..+... +   .|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       248 g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~  315 (317)
T 2y25_A          248 GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGS-ETSDFTVSVFI  315 (317)
T ss_dssp             CSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCS-TTCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             cCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEeCCCe-EEEEEEEEEEc
Confidence            999999999999998877666665443 3   799999997 9999999999999884 45667777764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.90  E-value=3.3e-23  Score=158.24  Aligned_cols=180  Identities=16%  Similarity=0.254  Sum_probs=124.1

Q ss_pred             CCcceeec-eeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKF-IQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~-~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+...+ ....+.+|+++.|.|.+. +.|.+.+.|++++..+...   .++.+....           .....+|.|.
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~---~~~~~~~~~-----------~~~~~~L~i~  171 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDR-----------NTGIIEMFME  171 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS---SSCEEEEET-----------TTTEEEEEES
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC---CcEEEEEcc-----------CCCEEEEEEc
Confidence            45554444 378899999999999998 7888999999999887654   111111000           0011349999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEe---------------------cCCeeccCCCcceecCCcEEEEeeeCc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------------------GAPFVRPMGNVSAIAGEPLYLGCPVAG  138 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~  138 (258)
                      ++ +..|+|.|+|.+.+......   ..+.+.                     .+|.+.......+..|+.+.|.|.+.+
T Consensus       172 ~~-~~~d~G~Y~C~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~  247 (312)
T 2y23_A          172 KL-QDEDEGTYTFQLQDGKATNH---STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVAN  247 (312)
T ss_dssp             CC-CGGGCEEEEEEEESSSCEEE---EEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEES
T ss_pred             cC-CcccCEeEEEEEEeCCceEE---EEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcC
Confidence            99 99999999999976543322   233331                     112211112256889999999999999


Q ss_pred             ccCc-eEEEEeCCcccCCCcceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        139 YPIE-SITWQKGVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       139 ~~~~-~i~W~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      .|.+ .+.|++++..+....++.+... ..|.|.++.. +|+|.|+|.|.|..|. ....+.|.+
T Consensus       248 ~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~i  310 (312)
T 2y23_A          248 IKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK-KDAGIYEVILKDDRGK-DKSRLKLVD  310 (312)
T ss_dssp             CCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSG-GGCEEEEEEEESTTCC-EEEEEEECS
T ss_pred             CCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCH-HHCEEEEEEEEcCCCc-eeeeeEEEe
Confidence            8887 9999999988765444444333 5799999997 9999999999999884 444555543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.90  E-value=1.2e-23  Score=152.96  Aligned_cols=187  Identities=21%  Similarity=0.310  Sum_probs=119.6

Q ss_pred             eeeeecCCCceEEEEEEeecCC-----CeEEEeeCCEeCcCCccccceecccceeeccccccceeeee------CCcEEE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPT-----PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP------NGTLLI   78 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i   78 (258)
                      ..+.+.+|++++|.|.+.+.+.     +.+.|++++......      ...........+..+..+..      +++|.|
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~------~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   76 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVH------SFTEGRDQGSAYSNRTALFPDLLVQGNASLRL   76 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEE------EEETTEEEEESSCSCEECCTTTGGGTBCCEEE
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEE------EEcCCcccccceeCcEEEecccccCCeEEEEE
Confidence            4567899999999999887643     689999976432110      00000000112222333222      678999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecC---CeeccCCCcceecCCcEEEEeee-CcccCceEEEEe-CCccc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQK-GVQQL  153 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~-~~~~~  153 (258)
                      .++ +.+|+|.|+|.+.+... .. ..+.|.|..+   +.+.......+..|+.+.|.|.+ .+.|.+.+.|++ ++..+
T Consensus        77 ~~v-~~~D~G~Y~C~~~~~~~-~~-~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~  153 (222)
T 4i0k_A           77 QRV-RVTDEGSYTCFVSIQDF-DS-AAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL  153 (222)
T ss_dssp             CSC-CGGGCSCEEEEEEECCC-CC-CCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             CCc-ccccCEEEEEEEEeCCC-ce-EEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccC
Confidence            999 99999999999998532 22 4556666544   34444444567789999999999 778999999999 44444


Q ss_pred             CCCcceEE--ecCCe---EEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        154 PLNRRQKV--FPNGT---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       154 ~~~~~~~~--~~~~~---l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                      ........  ..++.   |.|.++.. +|.|.|+|.+.|..+ .....+.|.|..+|..
T Consensus       154 ~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~  210 (222)
T 4i0k_A          154 TGNVTTSQMANERGLFDVHSVLRVVL-GANGTYSCLVRNPVL-QQDAHGSVTITGQPLT  210 (222)
T ss_dssp             CSEEEEEEEECTTSCEEEEEEEEEEC-CTTCEEEEEEEETTT-TEEEEEEEECCC----
T ss_pred             CCCcceeEEcCCCCeEEEEEEEEEEe-CCCCEEEEEEECCCC-CCceEEEEEEeCCccc
Confidence            43222222  22333   78888887 999999999999988 4567777888777643

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.90  E-value=5.6e-23  Score=157.20  Aligned_cols=185  Identities=20%  Similarity=0.254  Sum_probs=132.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++..+....   .....          ..........|.|..
T Consensus       117 ~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~---~~~~~----------~~~~~~~~s~l~i~~  183 (313)
T 4fqp_A          117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS---QVPGF----------LSGTVTVTSLWILVP  183 (313)
T ss_dssp             CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE---EEECS----------STTCEEEEEEEEECC
T ss_pred             CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc---eeeee----------cccccccceeeeecc
Confidence            46666666677788899999999875 57889999999876554321   10000          000111123577888


Q ss_pred             cccCCCceEEEEEEEeCCcce-eeceEEEEEecCCeec--cCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFVR--PMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLN  156 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~  156 (258)
                      . ...|.|.|+|.+.+..+.. ....+.|.|..+|.+.  ......+..|+.+.|.|.+.|.|.| .|.|++++..+...
T Consensus       184 ~-~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~  262 (313)
T 4fqp_A          184 S-SQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF  262 (313)
T ss_dssp             C-GGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT
T ss_pred             c-ccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc
Confidence            8 8899999999999976543 2355566666555432  2344456678999999999999988 69999999887543


Q ss_pred             cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      .   ...+++|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus       263 ~---~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P  306 (313)
T 4fqp_A          263 A---VAQGAQLLIRPVDK-PINTTLICNVTNALGA-RQAELTVQVKEGP  306 (313)
T ss_dssp             E---EEETTEEEECCCSS-CCEEEEEEEEECSSCE-EEEEEEEEEECCC
T ss_pred             e---EEeCCEEEECcCCh-hhCEEEEEEEEeCCCc-EEEEEEEEEEeCC
Confidence            2   33567899999997 9999999999999984 5677888887654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.90  E-value=1.5e-22  Score=150.14  Aligned_cols=199  Identities=16%  Similarity=0.251  Sum_probs=126.0

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----   73 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----   73 (258)
                      .+...+.++.+.+|++|+|.|.+.+.+  .+.+.|+|.  +..+...   .... ..........+..+..+..+     
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   79 (253)
T 3uzq_A            3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWI---GRIDPANGDTKYDPKFQGKATITADTSSNT   79 (253)
T ss_dssp             CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTE
T ss_pred             eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEE---EEEccCCCcceeCCcCCCcEEEEeecCCCe
Confidence            356677889999999999999998743  679999983  2111000   0000 00001111112223333322     


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecC---------------Cee-ccCCCcceecCCcEEEEeeeC
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA---------------PFV-RPMGNVSAIAGEPLYLGCPVA  137 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------~~~-~~~~~~~~~~g~~~~l~C~~~  137 (258)
                      .+|.|.++ +.+|+|.|+|.+.+..+........|.|...               +.+ ..+....+.+|+++.|.|.+.
T Consensus        80 ~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  158 (253)
T 3uzq_A           80 AYLHLSSL-TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRAS  158 (253)
T ss_dssp             EEEEECSC-CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEES
T ss_pred             EEEEeCCC-CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEec
Confidence            24999999 9999999999999866554335667777742               222 224456788999999999998


Q ss_pred             cccCc----eEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        138 GYPIE----SITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       138 ~~~~~----~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      +.+.+    .+.|+++.  ....            ...++....   ..+|.|.++.. +|+|.|+|.+.+........-
T Consensus       159 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~n~~~~~fg~g  237 (253)
T 3uzq_A          159 ENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEA-DDVATYFCQRSNEVPWTFGGG  237 (253)
T ss_dssp             SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEEEEECSSSSCCBCCC
T ss_pred             CccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCH-HHCEEEEEEEccCCCcEECCC
Confidence            87765    89999852  2211            112222211   23599999997 999999999998765444556


Q ss_pred             EEEEeecCCcc
Q psy14532        197 VHISVTVPPKI  207 (258)
Q Consensus       197 ~~l~v~~~p~~  207 (258)
                      ..|.|...+..
T Consensus       238 t~l~v~~~~~~  248 (253)
T 3uzq_A          238 TKLEIKRPLEH  248 (253)
T ss_dssp             EEEEECCC---
T ss_pred             EEEEEcCCCCC
Confidence            67777665443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.90  E-value=2.6e-22  Score=151.63  Aligned_cols=179  Identities=18%  Similarity=0.262  Sum_probs=129.8

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCe-EEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      +...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..+...   .++                ....+++|.|.++ 
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~---~~~----------------~~~~~~~L~i~~v-  151 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK---TVY----------------FFSPWRGFIIRKA-  151 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT---CCE----------------EEETTTEEEESSC-
T ss_pred             eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCC---ccE----------------EECCCCCEEEeec-
Confidence            45556778899999999999998866554 99986 56555432   111                2234567999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEe----cCCeecc-CCCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCC
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVT----GAPFVRP-MGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLN  156 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~  156 (258)
                      +..|+|.|+|.+.+......+..+.|.|.    .+|.+.. +....+..|+.+.|.|.+.+ .|.+.+.|++++..+...
T Consensus       152 ~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  231 (289)
T 3ejj_X          152 KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP  231 (289)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC
T ss_pred             ccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc
Confidence            99999999999995444444477888887    3444333 44455678999999999988 788999999999877654


Q ss_pred             cceE-----EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        157 RRQK-----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       157 ~~~~-----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      ....     ....+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.+..++
T Consensus       232 ~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~s~~L~~~~~~  283 (289)
T 3ejj_X          232 LNSDFQDNYYKKVRALSLNAVDF-QDAGIYSCVASNDVGT-RTATMNFQVVESH  283 (289)
T ss_dssp             EEEEECSSSEEEEEEEEESSCCS-SSCEEEEEEEECSSCE-EEEEEEEECC---
T ss_pred             CCcccccceEEeeEEEEEEeecc-cCCEEEEEEEEcCCCC-ccccEEEEEEecc
Confidence            3222     12245799999997 9999999999999884 5566666665443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.90  E-value=1.3e-23  Score=155.37  Aligned_cols=194  Identities=15%  Similarity=0.214  Sum_probs=116.9

Q ss_pred             Ccce-eeceeeeecCCCceEEEEEEeecCCCe-----EEEeeCCEeCcCCccccceecccceee----ccccccceeeee
Q psy14532          3 PQLI-YKFIQQTLQPGPPVSLKCIATGNPTPH-----ISWKLDGYPLAGDRHENKNRIGEARVQ----QLPLNRRQKVFP   72 (258)
Q Consensus         3 p~~~-~~~~~~~~~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   72 (258)
                      |.+. ..+..+.+.+|++++|.|.+.+.|.+.     +.|+|++.......  ..+........    ...+........
T Consensus         3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (248)
T 3pv7_A            3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEV--KVFEFFGDHQEAFRPGAIVSPWRLKSG   80 (248)
T ss_dssp             EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEE--EEEEEESSCEEESSTTCBCCHHHHTTT
T ss_pred             eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcce--EEEEecCCcccccCCceEEEeccCCCC
Confidence            4443 456677899999999999998876654     99999643211100  00000000000    000000111123


Q ss_pred             CCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccCc-eEEEEeCC
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKGV  150 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~~~  150 (258)
                      +.+|.|.++ +.+|+|.|+|.+.+..+... ..+.|.|..+|.+.......+..|+.+.|.|.+.+ .|.+ .+.|++++
T Consensus        81 ~~sL~I~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g  158 (248)
T 3pv7_A           81 DASLRLPGI-QLEEAGEYRCEVVVTPLKAQ-GTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQT  158 (248)
T ss_dssp             BCCEEESSC-CGGGCEEEEEEEEETTEEEE-EEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEEC
T ss_pred             cEEEEeCCC-CHHHCeEEEEEEEeCCccce-eEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECC
Confidence            567999999 99999999999999876655 78889998887665544445567788889999988 7888 99999998


Q ss_pred             cccCCCc---------ceEEecCC------eEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEe
Q psy14532        151 QQLPLNR---------RQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISV  201 (258)
Q Consensus       151 ~~~~~~~---------~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v  201 (258)
                      ..+....         ......++      .|.|..... +|.|.|+|.|.|..+. ..+..+.|.|
T Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          159 QKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQE-DPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CC-CTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccCCCccccccceeecccEECCCCCEEEEEEEEEcCccc-cCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            7553221         11112222      355666654 8899999999998764 2344555555

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.90  E-value=3.6e-22  Score=143.97  Aligned_cols=176  Identities=17%  Similarity=0.238  Sum_probs=116.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      +.. |.++.+.+|++++|.|.+.+.+.+.+.|+|++  ..+...      .... ......+..+....   .+.+|.|.
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~------~~~~-~~~~~~~~~r~~~~~~~~~~~L~I~   75 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLL------IYKA-SNLASGVPARFSGSGSGTDFTLTID   75 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEE------EETT-TEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEE------EEcc-ccccCCccccEEEEecCCEEEEEEC
Confidence            445 88899999999999999998888899999842  211000      0000 00000111121111   23479999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEEEEeCCccc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKGVQQL  153 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~  153 (258)
                      ++ +.+|+|.|+|.+.+..+........|.|..   +|.+.. .....+..|+.+.|.|.+.+ .|.+ .+.|++++..+
T Consensus        76 ~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~  154 (210)
T 1lk3_L           76 PV-EADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTER  154 (210)
T ss_dssp             SC-CGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CC-CHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccC
Confidence            99 999999999999987765443455677764   343332 23333447899999999987 4543 89999999877


Q ss_pred             CCC-cc---eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        154 PLN-RR---QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       154 ~~~-~~---~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ... ..   .....+      ..|.|.++.. +|+|.|+|.|.|...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          155 RDGVLDSVTDQDSKDSTYSMSSTLSLTKADY-ESHNLYTCEVVHKTS  200 (210)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEECTTC
T ss_pred             CCCceEccCCccCCCCCEEEEEEEEEChHHh-ccCCcEEEEEEecCC
Confidence            644 11   111122      2588999887 899999999999754

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.90  E-value=7.9e-22  Score=142.55  Aligned_cols=176  Identities=16%  Similarity=0.213  Sum_probs=114.6

Q ss_pred             eeeceeeeecCCCceEEEEEEeec-------CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGN-------PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PN   73 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   73 (258)
                      ...+..+.+.+|++|+|.|.+.+.       +.+.+.|+|++........  .............+..|..+.     .+
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~   81 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEV--VATNNPDRRVKPETQGRFRLLGDVQKKN   81 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCB--SEESCTTSCBCTTTTTTEEECSCGGGTB
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccce--EecCCcccccCccccCceEEeccCCCCe
Confidence            345778889999999999998753       4678999997642110000  000000000011112222222     24


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCccee---eceEEEEEecC---CeeccCCCcceecCCcEEEEeeeCcc----cCce
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVTGA---PFVRPMGNVSAIAGEPLYLGCPVAGY----PIES  143 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~  143 (258)
                      .+|.|.++ +.+|+|.|.|.+.+..+...   ...+.|.|...   |.+..+.  .+.+|+.+.|.|.+.+.    |.+.
T Consensus        82 ~sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           82 CSLSIGDA-RMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             CCEEECSC-CGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             EEEEEccC-CHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCce
Confidence            57999999 99999999999998753221   25677888764   3333222  36789999999999763    7889


Q ss_pred             EEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        144 ITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       144 i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|++++.......   ....+.|.|..+.. +|+|.|+|.|.|..+
T Consensus       159 v~W~~~~~~~~~~~---~~~~~~L~i~~~~~-~~~g~Y~C~a~n~~~  201 (214)
T 2zg1_A          159 FSWTGNALSPLDPE---TTRSSELTLTPRPE-DHGTNLTCQMKRQGA  201 (214)
T ss_dssp             EEEESSTTSSSCSS---CCCSSEEEECCCTT-CCSCEEEEEEECC--
T ss_pred             EEEeCCCCccCCCC---ceeEEEEEEecccH-HcCcEEEEEEEeCCC
Confidence            99999886543221   13556789988875 899999999999753

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=4.6e-22  Score=140.43  Aligned_cols=161  Identities=23%  Similarity=0.383  Sum_probs=115.5

Q ss_pred             eeecCCCceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      ..+.+|++++|.|.+.+.+.+  .+.|+|++..+.......                     ....|.|.   +..|+|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~---------------------~~~~l~i~---~~~d~G~   63 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---------------------QKTEFKVD---SDDQWGE   63 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC---------------------SEEEEEEC---GGGCCEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC---------------------CcEEEEEe---chhhCeE
Confidence            457899999999999886666  899999998775441000                     01234343   4779999


Q ss_pred             EEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCccc-CceEEEEe---CCcc-cCC--CcceEE
Q psy14532         90 YWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYP-IESITWQK---GVQQ-LPL--NRRQKV  161 (258)
Q Consensus        90 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~---~~~~-~~~--~~~~~~  161 (258)
                      |+|.+.+..   . ..+.|.|..+|.+.. .....+.+|+.+.|.|.+.+.| .+.+.|++   ++.. +..  ..++.+
T Consensus        64 Y~C~~~n~~---~-~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~  139 (184)
T 3b5h_A           64 YSCVFLPEP---M-GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV  139 (184)
T ss_dssp             EEEEEESTT---S-CEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEE
T ss_pred             EEEEEECCc---C-cEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEE
Confidence            999999722   2 566788887765443 3445688899999999999988 79999999   4433 321  133444


Q ss_pred             ecCC---eEEEEecc-cCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        162 FPNG---TLLIENVQ-KDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       162 ~~~~---~l~i~~~~-~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      ..++   .|.|.++. . +|.|.|+|.|.|..+. ....+.|.|.
T Consensus       140 ~~~~~~~~L~i~~v~~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~  182 (184)
T 3b5h_A          140 SSSQGRSELHIENLNME-ADPGQYRCNGTSSKGS-DQAIITLRVR  182 (184)
T ss_dssp             EEETTEEEEEECSCCTT-TSSEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EecCCeeEEEEeecccc-ccCceEEEEEEeCCCc-ceEEEEEEEe
Confidence            3333   79999998 7 9999999999999874 4445666664

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.90  E-value=5.9e-22  Score=143.15  Aligned_cols=181  Identities=15%  Similarity=0.178  Sum_probs=118.4

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      |.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|.+.....     ................+....   .+.+|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   76 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAP-----KLLIYYTNKLADGVPSRFSGSGSGRDSSFTIS   76 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCC-----EEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCc-----EEEEEEcCcCCCCCCCcEEEeccCCEEEEEEC
Confidence            6677778899999999999999999888889999984210000     000000000001111121111   34479999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE---ecCCeecc-CCCcceecCCcEEEEeeeCcccC--ceEEEEeCCccc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV---TGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPI--ESITWQKGVQQL  153 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~--~~i~W~~~~~~~  153 (258)
                      ++ +.+|+|.|+|.+.+..+........|.|   ..+|.+.. .....+..|+.+.|.|.+.+.++  +.+.|++++..+
T Consensus        77 ~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l  155 (213)
T 3r06_A           77 SL-ESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEK  155 (213)
T ss_dssp             SC-CGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CC-CcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCccc
Confidence            99 9999999999999876544445667777   33343332 33444556888999999987554  489999999877


Q ss_pred             CCCc--ce--EEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        154 PLNR--RQ--KVFPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       154 ~~~~--~~--~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ....  ..  ....++      .|.|..... +|+|.|+|.|.|...
T Consensus       156 ~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          156 RDGVLQSVTDQDSKDSTYSLSSTLSLTKADY-ERHNLYTCEVTHKTS  201 (213)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEEETTC
T ss_pred             CCceEeccCceeCCCCcEEEEEEEEeCHHHh-ccCCeEEEEEEeccc
Confidence            6431  11  111222      466777766 789999999999753

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.89  E-value=4.1e-22  Score=148.45  Aligned_cols=165  Identities=20%  Similarity=0.367  Sum_probs=125.7

Q ss_pred             ceeeceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +...+....+.+|+.+.|.|.+ .+.+.+.+.|++++..+...                        ..++.|.|.++ +
T Consensus        85 ~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------------------------~~~~~l~i~~~-~  139 (262)
T 3rjd_A           85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------------------------HWNSNLTILKT-N  139 (262)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------------------EECCCEEESSC-C
T ss_pred             eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------------------------CCCCeEEEEEC-C
Confidence            3445556778899999999999 56677899999998775322                        12568999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccC-c----eEEEEeCCcccCC
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPI-E----SITWQKGVQQLPL  155 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~----~i~W~~~~~~~~~  155 (258)
                      ..|+|.|+|.+.+..+... ..+.|.|..   ++.+.......+..|+.+.|.|.+.+.|. +    .+.|++++..+..
T Consensus       140 ~~d~G~Y~C~~~n~~~~~~-~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~  218 (262)
T 3rjd_A          140 ISHNGTYHCSGMGKHRYTS-AGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG  218 (262)
T ss_dssp             GGGCEEEEEEEESSSEEEE-ECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE
T ss_pred             hhhCEEEEEEEeCCCCccc-cceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc
Confidence            9999999999999886554 777888874   34444445667889999999999998764 4    4789998886642


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc--cceEEEEe
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISV  201 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~--~~~~~l~v  201 (258)
                           ......|.|.++.. +|+|.|+|.|.|..|...  +..+.|.|
T Consensus       219 -----~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~G~~~~~s~~~~l~V  260 (262)
T 3rjd_A          219 -----RNTSSEYQILTARR-EDSGLYWCEAATEDGNVLKRSPELELQV  260 (262)
T ss_dssp             -----EESCCEEEESSCCG-GGCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred             -----cCCCceEEEEEech-hhCeEEEEEEEcccCceEEecCCeEEEE
Confidence                 13556899999997 999999999999988533  34444444

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=143.26  Aligned_cols=172  Identities=17%  Similarity=0.150  Sum_probs=114.1

Q ss_pred             eceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .|..+.+.+|++|+|.|.+.+ .+.+.+.|++++..+......... ..........+..|..+..+++|.|.++ +..|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~R~~~~~~~sL~I~~v-~~~D   81 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETK-SPEIHVTNPKQGKRLNFTQSYSLQLSNL-KMED   81 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSS-CCEEEECCHHHHTTEEECTTCCEEECSC-CGGG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCC-CCceeecCccccccEEECCCeEEEECCC-Cccc
Confidence            466788999999999999875 455699999987654311000000 0000001112223444446789999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEEEecCCe---eccCCCcceecCC-cEEEEeeeCcc-cCceEEEEeCCcccCCCcceEE
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHISVTGAPF---VRPMGNVSAIAGE-PLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKV  161 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~---~~~~~~~~~~~g~-~~~l~C~~~~~-~~~~i~W~~~~~~~~~~~~~~~  161 (258)
                      +|.|+|.+.+..+... ..+.|.|..++.   +.... .....|. .+.|.|.+.+. |.+.+.|++++..+.       
T Consensus        82 ~G~Y~C~~~~~~~~~~-~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~-------  152 (193)
T 2if7_A           82 TGSYRAQISTKTSAKL-SSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS-------  152 (193)
T ss_dssp             CEEEEEEEECSSCEEE-EEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-------
T ss_pred             CceEEEEEEecCCCeE-EEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC-------
Confidence            9999999999877655 577888876542   11111 1223454 79999999884 578999999887542       


Q ss_pred             ecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        162 FPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                       ....|.|.....+.|.|.|+|.|.|..+.
T Consensus       153 -~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~  181 (193)
T 2if7_A          153 -SQPNLTVSWDPRISSEQDYTCIAENAVSN  181 (193)
T ss_dssp             -SSSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred             -CCCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence             33456675444423899999999998874

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.89  E-value=6.4e-22  Score=148.62  Aligned_cols=194  Identities=16%  Similarity=0.230  Sum_probs=121.9

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeee---CCcEEEe
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP---NGTLLIE   79 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~   79 (258)
                      +.+...+.++.+.+|++|+|.|.+.+.+.+.+.|+|++.....    ........ ........+.....   +.+|.|.
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~----~~~~~~~~-~~~~~~~~r~~~~~~~~~~~L~I~   87 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAP----KLLIYSAS-FLYSGVPSRFSGSGSGTDFTLTIS   87 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCC----EEEEETTT-EECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCC----EEEEEEcC-ccCCCCCCCEEEeccCCeEEEEEc
Confidence            4567778889999999999999999888889999985321000    00000000 00001111222221   2379999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecCC---------------eeccCCCcceecCCcEEEEeeeCccc--Cc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP---------------FVRPMGNVSAIAGEPLYLGCPVAGYP--IE  142 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---------------~~~~~~~~~~~~g~~~~l~C~~~~~~--~~  142 (258)
                      ++ +.+|+|.|+|.+.+..+........|.|...+               .+..+....+.+|+.+.|.|.+.+.+  .+
T Consensus        88 ~v-~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~  166 (276)
T 3auv_A           88 SL-QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDY  166 (276)
T ss_dssp             SC-CGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             cC-ChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCC
Confidence            99 99999999999998755433244566665432               12224456788999999999998765  58


Q ss_pred             eEEEEeCC--ccc-----------------CCCcceEEecC-----CeEEEEecccCCCCcEEEEEEEeCC----CCCcc
Q psy14532        143 SITWQKGV--QQL-----------------PLNRRQKVFPN-----GTLLIENVQKDHDRGVYWCTATNKQ----GRSSS  194 (258)
Q Consensus       143 ~i~W~~~~--~~~-----------------~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C~~~~~~----~~~~~  194 (258)
                      .+.|++++  ...                 ....++.+..+     .+|.|.++.. +|+|.|+|.+.|..    .....
T Consensus       167 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~n~~~~~~~~~fg  245 (276)
T 3auv_A          167 WIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA-EDTAVYYCARFVFFLPYAMDYWG  245 (276)
T ss_dssp             EEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEECSSTTCSCCCBC
T ss_pred             EEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh-hHCEEEEEEEEcCcCCcCceEEC
Confidence            99999963  211                 01223333322     2799999997 99999999999972    21223


Q ss_pred             ceEEEEeec
Q psy14532        195 QNVHISVTV  203 (258)
Q Consensus       195 ~~~~l~v~~  203 (258)
                      ....|.|..
T Consensus       246 ~gt~l~V~~  254 (276)
T 3auv_A          246 QGTLVTVSS  254 (276)
T ss_dssp             CCEEEEEC-
T ss_pred             CCEEEEEcc
Confidence            345566654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.89  E-value=4.9e-22  Score=147.66  Aligned_cols=194  Identities=13%  Similarity=0.219  Sum_probs=120.0

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCcccccee-cccceeeccccccceeeee-----CCcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNR-IGEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  ..+...   .... ..........+..|..+..     ..+|
T Consensus         7 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   83 (256)
T 3umt_A            7 QQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWI---GGINPNNGGTSYNQKFKGKAILTVDKSSSTAYL   83 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTTCCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             EccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEE---EEEeccCCcccccccccceEEEEEecCCCEEEE
Confidence            345567799999999999998755  5789999842  111000   0000 0000111111223333332     2349


Q ss_pred             EEeecccCCCceEEEEEEEeCC---cceeeceEEEEEec----------------CCeec-cCCCcceecCCcEEEEeee
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQ---GRSSSQNVHISVTG----------------APFVR-PMGNVSAIAGEPLYLGCPV  136 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~----------------~~~~~-~~~~~~~~~g~~~~l~C~~  136 (258)
                      .|.++ +.+|+|.|.|.+.+..   .........|.|..                ++.+. .+....+.+|+.++|.|.+
T Consensus        84 ~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  162 (256)
T 3umt_A           84 ELRSL-TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRA  162 (256)
T ss_dssp             EECSC-CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             EECCC-CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEE
Confidence            99999 9999999999998872   12222556777774                22222 2444678899999999999


Q ss_pred             CcccCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        137 AGYPIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       137 ~~~~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      .+.+.+.+.|+++.  ....            ...++....   ..+|.|.++.. +|+|.|+|.+.+...........|
T Consensus       163 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~~~~~~~fg~gt~L  241 (256)
T 3umt_A          163 SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES-EDFVDYYCLQYASSPPTFGGGTKL  241 (256)
T ss_dssp             SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG-GGCSEEEEEECSSSSCEECCCEEE
T ss_pred             ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh-hHCEEEEEEEeeCCCcEECCCEEE
Confidence            98887899999842  2111            112222221   22599999997 999999999998654334455667


Q ss_pred             EeecCC
Q psy14532        200 SVTVPP  205 (258)
Q Consensus       200 ~v~~~p  205 (258)
                      .|..++
T Consensus       242 ~V~~~~  247 (256)
T 3umt_A          242 EIKRAA  247 (256)
T ss_dssp             EEC---
T ss_pred             EEECCC
Confidence            776544

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=1.3e-21  Score=144.51  Aligned_cols=191  Identities=18%  Similarity=0.245  Sum_probs=118.6

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i   78 (258)
                      .+.++.+.+|++|+|.|.+.+.+  .+.+.|+|+.  .......  ..............+..+..+..     ..+|.|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVA--VISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM   85 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE--EECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEE--EEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence            44668899999999999998876  5789999842  1110000  00000000000111122222222     246999


Q ss_pred             eecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCC---------------eec-cCCCcceecCCcEEEEeeeCcccC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP---------------FVR-PMGNVSAIAGEPLYLGCPVAGYPI  141 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~---------------~~~-~~~~~~~~~g~~~~l~C~~~~~~~  141 (258)
                      .++ +.+|+|.|+|.+.+..+. .......|.|...+               .+. .+....+.+|+.+.|.|.+.+.+.
T Consensus        86 ~~v-~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  164 (247)
T 2ghw_B           86 NSL-RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVR  164 (247)
T ss_dssp             CSC-CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCT
T ss_pred             CcC-CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCcc
Confidence            999 999999999999987322 12245577776542               121 234456889999999999999888


Q ss_pred             ceEEEEe--CCcccC------------CCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        142 ESITWQK--GVQQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       142 ~~i~W~~--~~~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      +.+.|++  ++..+.            ...++.+..   ..+|.|.++.. +|+|.|+|.+.+...........|.|.
T Consensus       165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP-EDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG-GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH-HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            8999999  444331            112332221   23599999997 999999999998543233344455554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=1.1e-21  Score=145.79  Aligned_cols=193  Identities=17%  Similarity=0.232  Sum_probs=119.9

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|+  +..+..-   ..............+..|..+..     +.+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~---~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWM---GRMWYDGYTAYNSALKSRLSISRDTSKNQVFLK   81 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEE---EEECSSSCEEECSSSSTTEEEEEETTTTEEEEE
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEE---EEEecCCceeeCcccCCcEEEEEECCCCEEEEE
Confidence            345567899999999999998874  679999985  2211000   00000000000111122222222     34799


Q ss_pred             EeecccCCCceEEEEEEEeCCc-------c-eeeceEEEEEecCC---------------eec-cCCCcceecCCcEEEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG-------R-SSSQNVHISVTGAP---------------FVR-PMGNVSAIAGEPLYLG  133 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~-------~-~~~~~~~l~v~~~~---------------~~~-~~~~~~~~~g~~~~l~  133 (258)
                      |.++ +.+|+|.|+|.+.+..+       . .......|.|...+               .+. .+....+.+|+.++|.
T Consensus        82 I~~v-~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~  160 (257)
T 1f3r_B           82 MNSL-QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLS  160 (257)
T ss_dssp             EESC-CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEE
T ss_pred             ECCC-CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEE
Confidence            9999 99999999999998743       1 12245577777543               111 2334567899999999


Q ss_pred             eeeCcccCceEEEEe--CCcccC------------CCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        134 CPVAGYPIESITWQK--GVQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       134 C~~~~~~~~~i~W~~--~~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      |.+.+.+.+.+.|++  ++..+.            ...++.+.   ...+|.|.++.. +|+|.|+|.+.|.. ......
T Consensus       161 C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~-~~~g~g  238 (257)
T 1f3r_B          161 CKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQP-EDVATYFCYQYNNG-YTFGAG  238 (257)
T ss_dssp             EECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCG-GGCSEEEEEEESSS-EEECCC
T ss_pred             EEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCCh-hhCEEEEEEEeCCC-CeECCC
Confidence            999988878999999  454331            01223221   223699999997 99999999999864 122233


Q ss_pred             EEEEeecCC
Q psy14532        197 VHISVTVPP  205 (258)
Q Consensus       197 ~~l~v~~~p  205 (258)
                      ..|.|...+
T Consensus       239 t~l~V~~~~  247 (257)
T 1f3r_B          239 TKLELKAAE  247 (257)
T ss_dssp             CEECCSSSC
T ss_pred             EEEEEeCCC
Confidence            445554433

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.89  E-value=3.5e-22  Score=144.83  Aligned_cols=182  Identities=14%  Similarity=0.203  Sum_probs=114.6

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceee---eeCCcE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTL   76 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l   76 (258)
                      |.+...+ .+.+.+|++|+|.|.+.+. +.+.+.|+|..  ......   ..............+..+...   ..+.+|
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L   77 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYV---MELKKDGSHSTGDGIPDRFSGSSSGADRYL   77 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEE---EEECTTSCEEECSSCCTTEEEEEETTEEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEE---EEEcccCccccCCCcccceEEecCCceEEE
Confidence            5666677 8899999999999999988 88999999832  111000   000000000011111112221   124569


Q ss_pred             EEeecccCCCceEEEEEEEeCCc----ceeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEE
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG----RSSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SIT  145 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~  145 (258)
                      .|.++ +.+|+|.|+|.+.+..+    ......+.|.|..    +|.+.. ........|+.+.|.|.+.+ .|.+ .+.
T Consensus        78 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~  156 (218)
T 3s96_B           78 SISNI-QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVA  156 (218)
T ss_dssp             EESSC-CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEccC-CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEE
Confidence            99999 99999999999998765    2223566788874    333322 33444556789999999988 5666 899


Q ss_pred             EEeCCcccCCCcce--EEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        146 WQKGVQQLPLNRRQ--KVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       146 W~~~~~~~~~~~~~--~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |++++..+......  ....+      ..|.|..... +|.|.|+|.|.|..+
T Consensus       157 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~-~d~g~Y~C~a~n~~~  208 (218)
T 3s96_B          157 WKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQW-RSHNSFTCQVTHEGD  208 (218)
T ss_dssp             EEETTEEC--------------CEEEEEEEEEEHHHH-HTCSCEEEEEEETTE
T ss_pred             EEECCEECcCceecCcccccCCcEEEEEEEEEeHHHc-cCCCeEEEEEEeCCC
Confidence            99999877542111  00112      2366777766 789999999999764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.89  E-value=1.2e-21  Score=144.97  Aligned_cols=178  Identities=17%  Similarity=0.259  Sum_probs=116.2

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|+|......     ....+............+....   .+.+|.|.
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~-----~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   79 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGT-----VKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTIS   79 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSC-----EEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCC-----CEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEc
Confidence            456667788889999999999999998888999998531000     0000000000001111111111   23379999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecC--------------------CeeccCCCcceecCCcEEEEeeeCcc
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA--------------------PFVRPMGNVSAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--------------------~~~~~~~~~~~~~g~~~~l~C~~~~~  139 (258)
                      ++ +.+|+|.|.|.+.+..+........|.|..+                    +.+..+....+.+|+.+.|.|.+.+.
T Consensus        80 ~v-~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  158 (250)
T 3esu_F           80 NL-EQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGY  158 (250)
T ss_dssp             SC-CGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCST
T ss_pred             cC-ChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCC
Confidence            99 9999999999999876554435556777643                    12233455678899999999999876


Q ss_pred             c--CceEEEEeC--CcccCC-----------------CcceEEecC-----CeEEEEecccCCCCcEEEEEEEe
Q psy14532        140 P--IESITWQKG--VQQLPL-----------------NRRQKVFPN-----GTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       140 ~--~~~i~W~~~--~~~~~~-----------------~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      +  .+.+.|+++  +..+..                 ..++.+..+     .+|.|.++.. +|+|.|+|.+.+
T Consensus       159 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~  231 (250)
T 3esu_F          159 AFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTS-VDSAVYFCARSG  231 (250)
T ss_dssp             TGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEEC
T ss_pred             cccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCc-ccCEEEEEEEec
Confidence            5  789999997  433211                 123333222     2699999998 999999999997

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.89  E-value=5.4e-22  Score=144.23  Aligned_cols=195  Identities=14%  Similarity=0.158  Sum_probs=121.2

Q ss_pred             eeceeeeecCCCceEEEEEEeecCCC---eEEEeeCCEeCcCC-ccccceecc-----cceeecc-ccccceeeeeCCcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGD-RHENKNRIG-----EARVQQL-PLNRRQKVFPNGTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~-~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~l   76 (258)
                      ..|.++.+.+|++|+|.|.+.+.+.+   .|.|+|++..+... .........     ..+.... ..........+++|
T Consensus         6 ~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL   85 (225)
T 4fmk_A            6 RVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL   85 (225)
T ss_dssp             ECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred             EeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence            34566788999999999999876555   48999975432110 000000000     0000000 00011122346789


Q ss_pred             EEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeee-CcccCceEEEEeCCcccC
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLP  154 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~  154 (258)
                      .|.++ +.+|+|.|+|.+.+..+........+.+..++.... ........++.+.+.|.+ .+.|++.+.|++++....
T Consensus        86 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~  164 (225)
T 4fmk_A           86 AFRGL-RVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA  164 (225)
T ss_dssp             EECSC-CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE
T ss_pred             EEccC-CHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcccc
Confidence            99999 999999999999987766554555666665553332 334445566777777766 457888999999876554


Q ss_pred             CCcceEEecC------CeEEEEecccCCCCcEEEEEEEeCCCCC-ccceEEEEeec
Q psy14532        155 LNRRQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTV  203 (258)
Q Consensus       155 ~~~~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~  203 (258)
                      .........+      +.|.|.++.. +|+|.|+|.|.|..+.. .+..+.|.|.+
T Consensus       165 ~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          165 KDTQEPGIQAGTVTIISRYSLVPVGR-ADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EEEEEECSSTTCEEEEEEEEECCCGG-GTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             CCcceEEecCCCEEEEEEEEEeeCCH-HHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            3322222222      2588888887 99999999999987643 34455565554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.89  E-value=1.3e-21  Score=145.26  Aligned_cols=180  Identities=16%  Similarity=0.203  Sum_probs=117.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecC-----CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---   71 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   71 (258)
                      +|.+...+..+.+.+|++++|.|.+.+.+     .+.+.|+|++  ..+...      ... .......+..+....   
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~------~~~-~~~~~~~~~~r~~~~~~~  110 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRL------IYL-VSKLDSGDPDRFTGSGSG  110 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEE------EET-TTEECTTCCTTEEEEEET
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEE------EEe-ccccCCCccceEEEecCC
Confidence            45677778889999999999999998876     4899999842  221100      000 000000111122222   


Q ss_pred             eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceEE
Q psy14532         72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESIT  145 (258)
Q Consensus        72 ~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i~  145 (258)
                      .+.+|.|.++ +.+|+|.|+|.+.+..+........|.|..   +|.+.. ........|+.+.|.|.+.+. |+ +.+.
T Consensus       111 ~~~~L~I~~v-~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  189 (254)
T 2c1o_A          111 TDFTLKISRV-EAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  189 (254)
T ss_dssp             TEEEEEESSC-CGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             CEEEEEECcC-CcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEE
Confidence            2237999999 999999999999987654433445666653   333332 233334468899999999884 44 4699


Q ss_pred             EEeCCcccCCC--cceE--------EecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        146 WQKGVQQLPLN--RRQK--------VFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       146 W~~~~~~~~~~--~~~~--------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |++++..+...  ....        ....+.|.|.++.. +|+|.|+|.|.|...
T Consensus       190 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          190 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTS  243 (254)
T ss_dssp             EEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEECTTC
T ss_pred             EEECCCcccCcceeccccccCCCCcEEEEEEEEeccccc-cCCCeEEEEEEcCCC
Confidence            99999877654  1111        11124688999987 999999999999764

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.89  E-value=1.5e-21  Score=143.29  Aligned_cols=179  Identities=17%  Similarity=0.209  Sum_probs=116.9

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceee---eeCCcEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLL   77 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~   77 (258)
                      +.+...+.++.+.+|++++|.|.+.+.+.+.+.|+|.+  .....       ..............+...   ..+.+|.
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~~~~~L~   97 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKL-------LIYSASFLYSGVPSRFSGSGSGTDFTLT   97 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEE-------EEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEE-------EEEeccccCCCCCCcEEEEcCCCEEEEE
Confidence            45566678889999999999999998888899999842  11100       000000000011111111   1345799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCc-cc-CceEEEEeCCc
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAG-YP-IESITWQKGVQ  151 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~-~~~i~W~~~~~  151 (258)
                      |.++ +.+|+|.|+|.+.+..+........|.|..   +|.+.. .....+..|+.+.|.|.+.+ .| .+.+.|++++.
T Consensus        98 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~  176 (237)
T 3sob_L           98 ISSL-QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA  176 (237)
T ss_dssp             ESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ECCC-ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCC
Confidence            9999 999999999999887654433555677643   333322 33334456888999999987 44 57999999998


Q ss_pred             ccCCCc----ceEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        152 QLPLNR----RQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       152 ~~~~~~----~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+....    ......+      ..|.|..... +|+|.|+|.|.|...
T Consensus       177 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          177 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGL  224 (237)
T ss_dssp             ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTC
T ss_pred             CCCCceeecccccccCCCcEEEEEEEEEcHHHc-cCCCcEEEEEeeCCC
Confidence            776431    1111122      3477777776 899999999999864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.89  E-value=1.6e-21  Score=144.90  Aligned_cols=195  Identities=15%  Similarity=0.248  Sum_probs=122.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCcccccee-cccceeeccccccceeeee----
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNR-IGEARVQQLPLNRRQKVFP----   72 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----   72 (258)
                      +|.+...+.++.+.+|++|+|.|.+.+.  +.+.+.|+|..  .....-   .... ..........+..|..+..    
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~   82 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWM---GWINPYNGNKEFSAKFQDRVTFTADTSA   82 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE---EEEETTTTEEEECTTTTTTEEEEEETTT
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEE---EEEEcCCCcEeecccCcceEEEEEecCC
Confidence            4667888899999999999999999873  56789999842  111000   0000 0000011112223333332    


Q ss_pred             -CCcEEEeecccCCCceEEEEEEEeC-----------CcceeeceEEEEEecCC----------------eeccCCCcce
Q psy14532         73 -NGTLLIENVQKDHDRGVYWCTATNK-----------QGRSSSQNVHISVTGAP----------------FVRPMGNVSA  124 (258)
Q Consensus        73 -~~~l~i~~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~~----------------~~~~~~~~~~  124 (258)
                       ..+|.|.++ +.+|+|.|.|.+.+.           ..........|.|...+                ....+....+
T Consensus        83 ~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  161 (256)
T 3juy_B           83 NTAYMELRSL-RSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSL  161 (256)
T ss_dssp             TEEEEEECSC-CGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEE
T ss_pred             CEEEEEECCC-CcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEE
Confidence             235999999 999999999999986           12222355677887632                2223555678


Q ss_pred             ecCCcEEEEeeeCcccC-ceEEEEeC--CcccC------------CCcceEEec---CCeEEEEecccCCCCcEEEEEEE
Q psy14532        125 IAGEPLYLGCPVAGYPI-ESITWQKG--VQQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~~~-~~i~W~~~--~~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      .+|++++|.|.+.+.+. +.+.|++.  +....            ...++.+..   ..+|.|.++.. +|+|.|+|.+.
T Consensus       162 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~  240 (256)
T 3juy_B          162 SPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEP-EDFALYYCQVY  240 (256)
T ss_dssp             CTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCSEEEEEEC
T ss_pred             eCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCH-hHCEEEEEEEe
Confidence            89999999999988765 89999983  22221            112222222   22599999997 99999999998


Q ss_pred             eCCCCCccceEEEEe
Q psy14532        187 NKQGRSSSQNVHISV  201 (258)
Q Consensus       187 ~~~~~~~~~~~~l~v  201 (258)
                      +...........|.|
T Consensus       241 ~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          241 GASSYTFGQGTKLER  255 (256)
T ss_dssp             CSSCCEECCCEEEEE
T ss_pred             eCCCceEcCCEEEEE
Confidence            854322333344443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.88  E-value=4.7e-23  Score=157.24  Aligned_cols=180  Identities=18%  Similarity=0.199  Sum_probs=127.0

Q ss_pred             eeceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ..+.......|+.+.|.|.+ .+.|.+.+.|++++..+.....   ....            ........|.|.++ ...
T Consensus       119 ~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~---~~~~------------~~~~~~s~l~i~~~-~~~  182 (308)
T 4fom_A          119 KGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT---SFPN------------ETATIISQYKLFPT-RFA  182 (308)
T ss_dssp             ECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE---ECTT------------SCEEEEEEEEECCC-GGG
T ss_pred             cccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc---eeee------------ecccccccceEEee-eec
Confidence            34455666789999999975 5688999999999876643310   0000            01112346889999 999


Q ss_pred             CceEEEEEEEeCCccee-eceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEE
Q psy14532         86 DRGVYWCTATNKQGRSS-SQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKV  161 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~  161 (258)
                      |.|.|+|.+.+..+... ...+.|.|..+|.+..  .....+..|+.+.|.|.+.|.|.+ .+.|++++..+....  ..
T Consensus       183 d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~--~~  260 (308)
T 4fom_A          183 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL--LA  260 (308)
T ss_dssp             TTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC--BC
T ss_pred             CCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE--EE
Confidence            99999999999765433 2455666665554332  334456678999999999999887 799999988775432  12


Q ss_pred             ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      ..+..|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus       261 ~~~~~l~i~~v~~-~d~G~Y~C~A~N~~G~-~~~~~~l~V~~~P~  303 (308)
T 4fom_A          261 SDNTLHFVHPLTF-NYSGVYICKVTNSLGQ-RSDQKVIYISDPPH  303 (308)
T ss_dssp             STTEEECCSCCCS-CCCSEEEEEEEETTEE-EEEEEECCEECCC-
T ss_pred             cCCeEEEECCCCh-hhCEEEEEEEEeCCCc-EEEEEEEEEEcCCC
Confidence            2233455667886 9999999999999884 56778888888875

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.88  E-value=1.5e-21  Score=144.90  Aligned_cols=194  Identities=16%  Similarity=0.251  Sum_probs=123.2

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      ...+.++.+.+|++|+|.|.+.+.+  .+.+.|+|+  +..+..-....  ..+........+..|..+..     +.+|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~--~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRID--PNSGGTKYNEKFKSKATLTVDKPSSTAYM   81 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEEC--TTTCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEe--cCCCceeeCcccCCeEEEEEecCCCEEEE
Confidence            4566778899999999999998764  569999984  22110000000  00000000111122222222     3479


Q ss_pred             EEeecccCCCceEEEEEEEeCCcc----eeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCc-----eEEE
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIE-----SITW  146 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~-----~i~W  146 (258)
                      .|.++ +.+|+|.|+|.+.+..+.    .....+.|.|...+.+. .+....+.+|+.++|.|.+.+.+.+     .+.|
T Consensus        82 ~I~~v-~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W  160 (256)
T 1nqb_A           82 QLSSL-TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEW  160 (256)
T ss_dssp             EECSC-CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEE
T ss_pred             EECcC-ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEE
Confidence            99999 999999999999987542    22245678887665443 3445678899999999999887754     9999


Q ss_pred             Ee--CCcccC------------CCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        147 QK--GVQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       147 ~~--~~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      ++  ++..+.            ...++...   ...+|.|.++.. +|+|.|+|.+.+...........|.|..
T Consensus       161 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          161 YLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA-EDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCCh-HHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            99  454331            01222221   223699999997 9999999999885432334455666654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.88  E-value=4.8e-22  Score=142.33  Aligned_cols=172  Identities=13%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             eeeecCCCceEEEEEEee----cCCCeEEEeeCCEeCcCCccccceecccceeecccccccee--eeeCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK--VFPNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~   84 (258)
                      .+.+.+|++|+|.|.+.+    .+.+.+.|++++..+.......       ......+..|..  ...+++|.|.++ +.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~-------~~~~~~~~~r~~~~~~~~~~L~I~~v-~~   74 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGD-------MNIWPEYKNRTIFDITNNLSIVILAL-RP   74 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTE-------EEECHHHHTTEEEESTTTTEEEECSC-CG
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCc-------eeecCcccceeEEccCCCcEEEEecc-cc
Confidence            467889999999999853    3567899999987653221100       001111112221  123568999999 99


Q ss_pred             CCceEEEEEEEeCCccee----eceEEEEEecCCeeccCCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcce
Q psy14532         85 HDRGVYWCTATNKQGRSS----SQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQ  159 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~  159 (258)
                      +|+|.|+|.+.+..+...    ...+.|.|..++............|+.+.|.|.+. +.|.|.+.|++++..+......
T Consensus        75 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~  154 (201)
T 1dr9_A           75 SDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT  154 (201)
T ss_dssp             GGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE
T ss_pred             hhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccce
Confidence            999999999999765432    35677777765321111111123578899999994 8899999999999877644322


Q ss_pred             E-EecC-CeEE---EEecccCCCCcEEEEEEEeCCCC
Q psy14532        160 K-VFPN-GTLL---IENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       160 ~-~~~~-~~l~---i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      . .... +.+.   +..+.. .|.|.|+|.|.|..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~v~~-~d~g~Y~C~a~n~~~~  190 (201)
T 1dr9_A          155 VSQDPETELYAVSSKLDFNM-TTNHSFMCLIKYGHLR  190 (201)
T ss_dssp             EEECTTTCCEEEEEEEEEET-TSCEEEEEEEEETTCC
T ss_pred             EEecCCCcEEEEEEEEEEEe-cCCCEEEEEEecCcce
Confidence            2 2223 3322   234555 8999999999998773

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.88  E-value=5.2e-21  Score=155.56  Aligned_cols=235  Identities=22%  Similarity=0.320  Sum_probs=136.9

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC----CeEEEeeC--CEeCcCCccccceecccceeeccccccceeee-----eCCc
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGT   75 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   75 (258)
                      ..+..+.+.+|++++|.|.+.+.+.    ..+.|||.  +.....-   ..............+..|..+.     .+.+
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l---~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   81 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWI---GGVYYTGSIYYNPSLRGRVTISVDTSRNQFS   81 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEE---EEEecCCCEEECCccCCceEEEecCCCCEEE
Confidence            3467788999999999999986432    67999985  2211100   0000000000111122232222     1357


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc-----------c-eeeceEEEEEec----CCeeccCCC--cceecCCcEEEEeeeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG-----------R-SSSQNVHISVTG----APFVRPMGN--VSAIAGEPLYLGCPVA  137 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~-----------~-~~~~~~~l~v~~----~~~~~~~~~--~~~~~g~~~~l~C~~~  137 (258)
                      |.|.++ +.+|+|.|.|.+.+..+           . .......|.|..    +|.+.....  .....++.+.|.|.+.
T Consensus        82 L~I~~v-~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~  160 (512)
T 1zvo_C           82 LNLRSM-SAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLIT  160 (512)
T ss_pred             EEECcC-CHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEE
Confidence            999999 99999999999987642           1 112445677763    232221111  1022468999999998


Q ss_pred             cc-cCc-eEEEEeCCcccCCC-cceEEecC------CeEEEEecccCCCCcEEEEEEEeCCCCCccc----------eEE
Q psy14532        138 GY-PIE-SITWQKGVQQLPLN-RRQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQ----------NVH  198 (258)
Q Consensus       138 ~~-~~~-~i~W~~~~~~~~~~-~~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~----------~~~  198 (258)
                      +. |.+ .++|++++...... .......+      ..|.|..... + .|.|+|.|.|..+.....          .+.
T Consensus       161 g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~  238 (512)
T 1zvo_C          161 GYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQW-R-QGEYKCVVQHTASKSKKEIFRWPESPKAQAS  238 (512)
T ss_pred             eeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHc-C-CceEEEEEEeCCCCceEEEecCCCCCCcCCE
Confidence            85 655 89999965432110 00011112      2477776665 5 899999999987642211          112


Q ss_pred             EEeecCC----------------------------------------------------ccccC-CCCCccCCCCeeeEE
Q psy14532        199 ISVTVPP----------------------------------------------------KIAPF-EFQPDLHSGDRAGVQ  225 (258)
Q Consensus       199 l~v~~~p----------------------------------------------------~~~~~-~~~~~~~~g~~~~l~  225 (258)
                      +.+..+|                                                    .+... +....+..|+.++|.
T Consensus       239 v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~  318 (512)
T 1zvo_C          239 SVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFT  318 (512)
T ss_pred             EEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEE
Confidence            3333232                                                    21111 222345679999999


Q ss_pred             EEeccCCCC-ceeEEEECCEecc
Q psy14532        226 CLVTKGDPP-LTISWLKNGLPIL  247 (258)
Q Consensus       226 C~~~~~~p~-~~~~W~~~g~~l~  247 (258)
                      |.+.+.+|+ ..|.|+++|+.+.
T Consensus       319 C~v~g~~P~~~~i~W~k~g~~~~  341 (512)
T 1zvo_C          319 CFVVGSDLKDAHLTWEVAGKVPT  341 (512)
T ss_pred             EEEeceECCCeEEEEEECCEecc
Confidence            999644553 5999999999876

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.88  E-value=9.4e-23  Score=158.25  Aligned_cols=172  Identities=19%  Similarity=0.304  Sum_probs=99.6

Q ss_pred             ceeeeecCCCceEEEEEE-----eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          9 FIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +....+.+|+.+.|.|.+     .+.|.+.+.|+|++..+...   ..                 .......|.|.++ +
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~---~~-----------------~~~~~~~L~i~~v-~  185 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF---NN-----------------VIPEGMNLSFLIA-L  185 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC---SS-----------------EEEETTEEEEESC-C
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc---cc-----------------eeecCCEEEEeee-e
Confidence            446678899999999974     66788999999999877432   11                 1112356999999 9


Q ss_pred             CCCceEEEEEEEeCC-cce--eeceEEEEEec------CCeeccCCC-c--ceecCCcEEEEeeeC----cccCceEEEE
Q psy14532         84 DHDRGVYWCTATNKQ-GRS--SSQNVHISVTG------APFVRPMGN-V--SAIAGEPLYLGCPVA----GYPIESITWQ  147 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~-~~~--~~~~~~l~v~~------~~~~~~~~~-~--~~~~g~~~~l~C~~~----~~~~~~i~W~  147 (258)
                      .+|+|.|+|.+.+.. +..  .+..+.|.|..      +|.+..+.. .  .+..|+.+.|.|.+.    +.|.+.+.|+
T Consensus       186 ~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~  265 (349)
T 4dep_C          186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT  265 (349)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEE
T ss_pred             ecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEE
Confidence            999999999999976 443  24777787765      344333221 1  678899999999998    5688999999


Q ss_pred             eCCcccCC-CcceEE------------ecCCeEEEEecccCCCC-cEEEEEEEeCCCCCccceEEEEeec
Q psy14532        148 KGVQQLPL-NRRQKV------------FPNGTLLIENVQKDHDR-GVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       148 ~~~~~~~~-~~~~~~------------~~~~~l~i~~~~~~~~~-g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      +++..+.. ..+...            .....|.|.++.. +|. |.|+|.|.|..|. ....+.|.|..
T Consensus       266 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~-~~~~~~l~v~~  333 (349)
T 4dep_C          266 IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTS-EDLKRSYVCHARSAKGE-VAKAAKVKQKV  333 (349)
T ss_dssp             SSCC--------CCCCEEEECCTTCCEEEEECC--------------CEEEEECSSCE-EEEECC-----
T ss_pred             ECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccH-HHcCCcEEEEEEcCCCc-EEEEEEEeeec
Confidence            99887654 221111            0123489999997 999 9999999999884 44455566644

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.88  E-value=6.3e-22  Score=149.78  Aligned_cols=178  Identities=19%  Similarity=0.234  Sum_probs=127.5

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCC-CeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      ...+.+..+.+|++++|.|.+.+... +.+.|+++ +..+...   .+.                ....++.|.|.++ +
T Consensus        93 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~---~~~----------------~~~~~~~L~i~~~-~  152 (292)
T 4dkd_C           93 NVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRH---TNY----------------SFSPWHGFTIHRA-K  152 (292)
T ss_dssp             EESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSS---CCE----------------ECCSSSCCEETTC-C
T ss_pred             cccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccC---Ccc----------------cccCCceEEECCC-C
Confidence            45566788999999999999987322 68999987 4444322   111                1123456999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCc
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNR  157 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~  157 (258)
                      ..|+|.|+|.+.+..+...+..+.|.|..    +|.+.. +....+..|+.+.|.|.+.+.|. ..+.|++++..+....
T Consensus       153 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~  232 (292)
T 4dkd_C          153 FIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ  232 (292)
T ss_dssp             GGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCB
T ss_pred             HHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCc
Confidence            99999999999988776655688888886    554433 44455679999999999987654 5788888887665443


Q ss_pred             ceEEe-----cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        158 RQKVF-----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       158 ~~~~~-----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      .....     ..+.|.|.++.. +|+|.|+|.|.|..+. .+..+.|.|....
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~~  283 (292)
T 4dkd_C          233 QSDFHNNRYQKVLTLNLDQVDF-QHAGNYSCVASNVQGK-HSTSMFFRVVESA  283 (292)
T ss_dssp             EEEEETTEEEEEEEEEESSCCT-TSCEEEEEEEECSSCE-EEEEEEECC----
T ss_pred             cceeccceeeeEEEEEECccCh-hcCeEEEEEEecCCCC-ceeEEEEEEeeCC
Confidence            32222     224799999997 9999999999999884 5566777766543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.88  E-value=2.8e-21  Score=142.40  Aligned_cols=177  Identities=19%  Similarity=0.250  Sum_probs=115.6

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLL   77 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~   77 (258)
                      +.+...+.++.+.+|++|+|.|.+.+.+.+.+.|+|+.  ......     .... .. ....+..|....   .+.+|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~-----~~~~-~~-~~~~~~~r~~~~~~~~~~~L~   74 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLL-----IKYA-SQ-SISGIPSRFSGSGSGTDFTLS   74 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEE-----EETT-TE-ECTTSCTTEEEEEETTEEEEE
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEE-----EEec-cc-cCCCCCCCEEEecCCCEEEEE
Confidence            45777888899999999999999998888899999853  111000     0000 00 000111122211   234799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC--------------eeccCCCcceecCCcEEEEeeeCccc--C
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--------------FVRPMGNVSAIAGEPLYLGCPVAGYP--I  141 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--------------~~~~~~~~~~~~g~~~~l~C~~~~~~--~  141 (258)
                      |.++ +.+|+|.|.|.+.+..+........|.|..++              .+..+....+.+|++++|.|.+.+.+  .
T Consensus        75 I~~v-~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~  153 (242)
T 2znx_A           75 INSV-ETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITS  153 (242)
T ss_dssp             ESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGG
T ss_pred             ECCC-ChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCC
Confidence            9999 99999999999998754333345567776543              12223345688999999999998764  5


Q ss_pred             ceEEEEeCC--cccC----------------CCcceEEec-----CCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        142 ESITWQKGV--QQLP----------------LNRRQKVFP-----NGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       142 ~~i~W~~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +.+.|+++.  ..+.                ...++.+..     ..+|.|.++.. +|+|.|+|.+.+.
T Consensus       154 ~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~~~  222 (242)
T 2znx_A          154 DYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT-EDTATYYCANXDG  222 (242)
T ss_dssp             SCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCG-GGCEEEEEEETTS
T ss_pred             cceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCc-CcCEEEEEeccCC
Confidence            789999853  2221                122333321     13799999998 9999999999874

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.88  E-value=6.6e-22  Score=152.33  Aligned_cols=177  Identities=19%  Similarity=0.247  Sum_probs=128.3

Q ss_pred             eceeeeecCC---CceEEEEE-EeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          8 KFIQQTLQPG---PPVSLKCI-ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         8 ~~~~~~~~~g---~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      .+....+.+|   +.++|.|. ..+.|.+.+.|++++......   ......           .........|.|.++ .
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~-----------~~~~~~~~~L~i~~~-~  202 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY---QEIRNP-----------NGTVTVISRYRLVPS-R  202 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE---EEEECT-----------TSCEEEEEEEEECCC-G
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc---ceeECC-----------CCcEEEEEEEEEEec-c
Confidence            4455667888   77999997 778899999999953211100   000000           011112346888888 8


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecCCeec--cCCCcceecCCcEEEEeeeCcccCce-EEEEeCCcccCCCcceE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR--PMGNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRRQK  160 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~~~~~~~~~  160 (258)
                      ..|+|.|+|.+.+..+... ..+.|.|..+|.+.  ......+..|+.+.|.|.+.+.|.+. +.|++++..+....   
T Consensus       203 ~~d~G~Y~C~a~n~~~~~~-~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~---  278 (331)
T 3u83_A          203 EAHQQSLACIVNYHMDRFK-ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV---  278 (331)
T ss_dssp             GGTTCEEEEEEEETTEEEE-EEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---
T ss_pred             ccCCCEEEEEEecCCCcce-eeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc---
Confidence            9999999999999887655 77788887666443  23445578899999999999999887 99999998876542   


Q ss_pred             EecCCeEEEE-ecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532        161 VFPNGTLLIE-NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP  205 (258)
Q Consensus       161 ~~~~~~l~i~-~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  205 (258)
                      ...+++|.|. ++.. +|.|.|+|.|.|..|. .+..+.|.|...+
T Consensus       279 ~~~~~~L~i~~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~~  322 (331)
T 3u83_A          279 EAQNRTLFFKGPINY-SLAGTYICEATNPIGT-RSGQVEVNITEAA  322 (331)
T ss_dssp             EEETTEEEECSCCCG-GGCEEEEEEEEETTEE-EEEEEEECCBC--
T ss_pred             eecCcEEEEeCCCcc-ccCeEEEEEEEecccc-ceEEEEEEEeccc
Confidence            2356789999 8987 9999999999999884 4677777777654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.88  E-value=1.4e-21  Score=149.62  Aligned_cols=182  Identities=18%  Similarity=0.219  Sum_probs=116.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...+... +.+|++++|.|.+. .+.+.+.|+|++..+..........               .....+.|.|.++
T Consensus       119 ~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~---------------~~~~~~~L~i~~v  181 (316)
T 3vh8_G          119 KPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIH---------------DGVSKANFSIGPM  181 (316)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEE---------------TTEEEEEEEECSC
T ss_pred             CCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeec---------------CCCceEEEEECCC
Confidence            34555554443 78999999999985 4566899999987654321000000               0113457999999


Q ss_pred             ccCCCceEEEEEEEeCCcce----eeceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQGRS----SSQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~  154 (258)
                       +.+|+|.|+|.+.+..+..    .+..+.|.|..   +|.+.......+.+|+.++|.|.+.. +.+.+.|++++..+.
T Consensus       182 -~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          182 -MLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRS-SYDMYHLSREGGAHE  259 (316)
T ss_dssp             -CGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESS-CCSEEEEEETTSSCC
T ss_pred             -ChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCC-CCcEEEEEECCCcCC
Confidence             9999999999999976631    13566777753   33333333346789999999999974 678999999998765


Q ss_pred             CCcceEEecC----CeEEEEecccCCCCcEEEEEEEeCCCC----CccceEEEEeecCC
Q psy14532        155 LNRRQKVFPN----GTLLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTVPP  205 (258)
Q Consensus       155 ~~~~~~~~~~----~~l~i~~~~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~~p  205 (258)
                      ..........    ..|.|.+++   |+|.|+|.+.|..+.    ..+..+.|.|..+|
T Consensus       260 ~~~~~~~~~~~~~~~~L~i~~v~---D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          260 RRLPAVRKVNRTFQADFPLGPAT---HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EEEECEECTTSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             CceeceeccCCceeEEEEcCCcC---CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            4322211111    468887775   999999999997542    45677777776655

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=3.9e-21  Score=141.39  Aligned_cols=177  Identities=18%  Similarity=0.291  Sum_probs=117.2

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecC----CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eC
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PN   73 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   73 (258)
                      ..+...+.++.+.+|++|+|.|.+.+.+    .+.+.|+|+.  ..+........       ........+..+.   .+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~-------~~~~~~~~r~~~~~~~~~   74 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRAS-------NLESGIPVRFSGTGSRTD   74 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTT-------EECTTCCTTEEEEEETTE
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEec-------ccCcCCCccEEEEecCCe
Confidence            3567788889999999999999998877    6789999852  21110000000       0000011121111   12


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC-------eeccCCCcceecCCcEEEEeeeCccc--CceE
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FVRPMGNVSAIAGEPLYLGCPVAGYP--IESI  144 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~i  144 (258)
                      .+|.|.++ +.+|+|.|+|.+.+..+........|.|...+       .+..+....+.+|+.+.|.|.+.+.|  .+.+
T Consensus        75 ~~L~I~~v-~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v  153 (240)
T 1moe_A           75 FTLIIDPV-EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYM  153 (240)
T ss_dssp             EEEEESSC-CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             EEEEEcCC-ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEE
Confidence            37999999 99999999999998765433355677776542       22234556788999999999998866  4699


Q ss_pred             EEEeCC--cccC-----------------CCcceEEecC-----CeEEEEecccCCCCcEEEEEEEeC
Q psy14532        145 TWQKGV--QQLP-----------------LNRRQKVFPN-----GTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       145 ~W~~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      .|+++.  ....                 ...++.+..+     .+|.|.++.. +|+|.|+|.|.+.
T Consensus       154 ~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~~~  220 (240)
T 1moe_A          154 HWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS-EDTAVYYCAPFGY  220 (240)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEECST
T ss_pred             EEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCH-HHCEEEEEEEEec
Confidence            999952  2221                 1123333221     3699999998 9999999999853

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.88  E-value=2.4e-21  Score=143.63  Aligned_cols=179  Identities=16%  Similarity=0.206  Sum_probs=116.0

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecC-----CCeEEEeeCCE--eCcCCccccceecccceeeccccccceeee---e
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDGY--PLAGDRHENKNRIGEARVQQLPLNRRQKVF---P   72 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   72 (258)
                      +.+...+..+.+.+|++|+|.|.+.+.+     .+.+.|+|++.  ....      ..... ......+..|....   .
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~------~~~~~-~~~~~~~~~r~~~~~~~~  107 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKL------LIYQV-STRFSGVPDRFSGSGSGT  107 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEE------EEETT-TEECTTCCTTEEEEEETT
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEE------EEEcC-CcccCCcCCceEEEccCC
Confidence            4456668888999999999999998876     57999998641  1100      00000 00001111222222   2


Q ss_pred             CCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEE
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITW  146 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W  146 (258)
                      +.+|.|.++ +.+|+|.|+|.+.+..+........|.|..   +|.+.. .....+..|+.++|.|.+.+. |.+ .+.|
T Consensus       108 ~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  186 (252)
T 3bkj_L          108 DFTLRISRV-EAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKW  186 (252)
T ss_dssp             EEEEEESSC-CGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEECCC-CcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEE
Confidence            237999999 999999999999887654333445677754   233332 233334478999999999884 443 7999


Q ss_pred             EeCCcccCCC-cc---eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        147 QKGVQQLPLN-RR---QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       147 ~~~~~~~~~~-~~---~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ++++..+... ..   .....+      ..|.|.++.. +|+|.|+|.|.|...
T Consensus       187 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~  239 (252)
T 3bkj_L          187 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTS  239 (252)
T ss_dssp             EETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEEEECTTC
T ss_pred             EECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhc-cCCCeEEEEEEeCCC
Confidence            9999876544 11   111122      2488888887 899999999999754

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.88  E-value=1.4e-21  Score=141.01  Aligned_cols=177  Identities=15%  Similarity=0.218  Sum_probs=114.2

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecC---CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGT   75 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   75 (258)
                      .+.. +.++.+.+|++++|.|.+.+.+   .+.+.|+|++  ..+..-      ..... .....+..+....   .+.+
T Consensus         3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~-~~~~~~~~r~~~~~~~~~~~   74 (212)
T 1q0x_L            3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGL------IGGTN-NRAPGVPARFSGSLIGDKAA   74 (212)
T ss_dssp             CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEE------EETTT-EECTTCCTTEEEEEETTEEE
T ss_pred             eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEE------EEcCc-ccCCcccccEEEEeeCCEEE
Confidence            3455 8888999999999999998876   3789999852  221000      00000 0000111121111   2347


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe----cCCeecc-CCCcceecCCcEEEEeeeCccc-Cc-eEEEEe
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT----GAPFVRP-MGNVSAIAGEPLYLGCPVAGYP-IE-SITWQK  148 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~-~~-~i~W~~  148 (258)
                      |.|.++ +.+|+|.|+|.+.+..+........|.|.    .+|.+.. .....+..|+.+.|.|.+.+.+ ++ .+.|++
T Consensus        75 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  153 (212)
T 1q0x_L           75 LTITGA-QTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKV  153 (212)
T ss_dssp             EEESSC-CGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEECCC-CccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEE
Confidence            999999 99999999999998765433355567774    2333332 2333345688999999998854 33 899999


Q ss_pred             CCcccCCCcce---EEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        149 GVQQLPLNRRQ---KVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       149 ~~~~~~~~~~~---~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ++..+......   ....+      ..|.|.++.. +|.|.|+|.|.|...
T Consensus       154 ~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          154 DGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHSSYSCQVTHEGH  203 (212)
T ss_dssp             TTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCCEEEEEEEETTE
T ss_pred             CCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHc-cCCCcEEEEEEeCCc
Confidence            99877543211   11122      2578888877 899999999999753

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.88  E-value=5.6e-21  Score=142.01  Aligned_cols=194  Identities=17%  Similarity=0.239  Sum_probs=119.2

Q ss_pred             eeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      +..+.++.+.+|++|+|.|.+.+.  +.+.+.|+|..  ......   ..............+..+..+..     ..+|
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   88 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYM---GYISYRGSTYYNPSLKSRISITRDTSKNQVYL   88 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEE---EEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEE---EEEecCCcEEecccccccEEEEEecCCceEEE
Confidence            456677889999999999999884  46799999842  110000   00000001111112223333332     2369


Q ss_pred             EEeecccCCCceEEEEEEEeCCc---ceeeceEEEEEecC--------------Ceec-cCCCcceecCCcEEEEeeeCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTGA--------------PFVR-PMGNVSAIAGEPLYLGCPVAG  138 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~~--------------~~~~-~~~~~~~~~g~~~~l~C~~~~  138 (258)
                      .|.++ +.+|+|.|+|.+.+..+   ........|.|..+              +.+. .+....+.+|++++|.|.+.+
T Consensus        89 ~I~~v-~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           89 QLKSV-SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             EECSC-CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred             EECCC-ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence            99999 99999999999998621   11224566777654              2222 234467889999999999988


Q ss_pred             ccCc-eEEEEeC--CcccCC------------CcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        139 YPIE-SITWQKG--VQQLPL------------NRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       139 ~~~~-~i~W~~~--~~~~~~------------~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      .+.+ .+.|+++  +.....            ..++...   ...+|.|.++.. +|+|.|+|.+.+........-..|.
T Consensus       168 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~~~~~~~fg~gt~l~  246 (257)
T 3gkz_A          168 SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA-EDAASYFCHQWSSFPFTFGSGTKLE  246 (257)
T ss_dssp             CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEEEEECSSSSCEECCCEEEE
T ss_pred             CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh-HHCEEEEEEEccCCceEEcCCEEEE
Confidence            7766 8999984  222210            1222221   123599999997 9999999999875432233444566


Q ss_pred             eecC
Q psy14532        201 VTVP  204 (258)
Q Consensus       201 v~~~  204 (258)
                      |...
T Consensus       247 v~~~  250 (257)
T 3gkz_A          247 IKRA  250 (257)
T ss_dssp             ECCC
T ss_pred             EEeC
Confidence            5543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.88  E-value=1.7e-20  Score=152.61  Aligned_cols=215  Identities=15%  Similarity=0.190  Sum_probs=129.6

Q ss_pred             CCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEE
Q psy14532         16 PGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      .|+.+.|.|.+.+. |.+ .|.|++++...... ........         ..  .......|.|... ... .|.|+|.
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~-~~~~~~~~---------~g--~~~~~s~L~i~~~-~~~-~g~ytC~  214 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQR-TFPEIQRR---------DS--YYMTSSQLSTPLQ-QWR-QGEYKCV  214 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceE-ecCceecC---------CC--CEEEEEEEEEcHH-HcC-CceEEEE
Confidence            46899999999886 665 89999964321100 00000000         00  0111235778777 666 8999999


Q ss_pred             EEeCCcceeeceE-----------EEEEecC-------------------------------------------------
Q psy14532         94 ATNKQGRSSSQNV-----------HISVTGA-------------------------------------------------  113 (258)
Q Consensus        94 ~~~~~~~~~~~~~-----------~l~v~~~-------------------------------------------------  113 (258)
                      +.+..+... ...           .+.+..+                                                 
T Consensus       215 v~n~~~~~~-~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  293 (512)
T 1zvo_C          215 VQHTASKSK-KEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSH  293 (512)
T ss_pred             EEeCCCCce-EEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCC
Confidence            999876543 211           2333211                                                 


Q ss_pred             ---Cee--ccCCCcceecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCc---ceEEecC------CeEEEEecccCCC
Q psy14532        114 ---PFV--RPMGNVSAIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNR---RQKVFPN------GTLLIENVQKDHD  177 (258)
Q Consensus       114 ---~~~--~~~~~~~~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~---~~~~~~~------~~l~i~~~~~~~~  177 (258)
                         |.+  ..+....+..|+.+.|.|.+.+. | ...|+|++++..+....   ......+      +.|.|..... +|
T Consensus       294 ~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~-~d  372 (512)
T 1zvo_C          294 TQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW-NA  372 (512)
T ss_pred             CCCCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHh-cC
Confidence               111  11222335579999999999885 4 24999999987754111   1111123      2478877776 89


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEe----ecCCccccCCCCCccCCCCeee-EEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISV----TVPPKIAPFEFQPDLHSGDRAG-VQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      .|.|+|.|.|..+......+....    ..+|.+...+...   .|+.+. |.|.+.+.+|+ ..+.|++||+.+..+
T Consensus       373 ~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~  447 (512)
T 1zvo_C          373 GTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTS  447 (512)
T ss_pred             CCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCc
Confidence            999999999987533222222111    2345444332221   789999 99999644555 579999999999765

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.87  E-value=3.3e-22  Score=144.29  Aligned_cols=176  Identities=16%  Similarity=0.248  Sum_probs=115.0

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee---eeeCCcEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK---VFPNGTLL   77 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~   77 (258)
                      |.+...+ .+.+.+|++|+|.|.+.  +.+.+.|+|+  +......       .............+..   ...+.+|.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~L~   71 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLV-------IYDVNKRPSGVPDRFSGSKSGNTASLT   71 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEE-------EBTTTBCCTTSCTTEEEEEETTEEEEE
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEE-------EEEecccCCCCcCcEEEEccCCEEEEE
Confidence            4555666 88899999999999988  7889999984  2211100       0000000000111111   12345799


Q ss_pred             EeecccCCCceEEEEEEEeCCc-ceeeceEEEEEe----cCCeecc-CCCcceecCCcEEEEeeeCccc--CceEEEEeC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVT----GAPFVRP-MGNVSAIAGEPLYLGCPVAGYP--IESITWQKG  149 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~  149 (258)
                      |.++ +.+|+|.|+|.+.+..+ ......+.|.|.    .+|.+.. +....+..|+.+.|.|.+.+.+  .+.+.|+++
T Consensus        72 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  150 (211)
T 3tv3_L           72 VSGL-QTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD  150 (211)
T ss_dssp             EESC-CGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ECCC-ChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEEC
Confidence            9999 99999999999999876 333366778887    3443332 3334444799999999998853  579999999


Q ss_pred             CcccCCCcc---eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        150 VQQLPLNRR---QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       150 ~~~~~~~~~---~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..+.....   .....+      ..|.|.++.. +|.|.|+|.|.|..+
T Consensus       151 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          151 SSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGS  199 (211)
T ss_dssp             TEEECTTEEECCCEECTTSSEEEEEEEEECHHHH-HHSSCEEEEEEETTE
T ss_pred             CeecCCCcccCCceECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEECCC
Confidence            987754211   111122      3477777776 789999999999764

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.87  E-value=4.2e-21  Score=141.03  Aligned_cols=179  Identities=19%  Similarity=0.295  Sum_probs=114.5

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee----eCCcEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLL   77 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~   77 (258)
                      .+.+.+.++.+.+|++|+|.|. .+.+.+.+.|+|+  +.....-   . ............+..+..+.    ...+|.
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~---~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   76 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLI---H-YSYGAGSTEKGDIPDGYKASRPSQENFSLI   76 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEE---E-EESSTTCCEECSSCTTCEEECCSSSBCEEE
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEE---E-EEecCcceeCCCccceEEEEccCCceEEEE
Confidence            4667788899999999999999 6778889999995  2111000   0 00000000000111122111    245799


Q ss_pred             EeecccCCCceEEEEEEEeCCcc----eeeceEEEEEecCCe------------e-ccCCCcceecCCcEEEEeeeCccc
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTGAPF------------V-RPMGNVSAIAGEPLYLGCPVAGYP  140 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~------------~-~~~~~~~~~~g~~~~l~C~~~~~~  140 (258)
                      |.++ +.+|+|.|+|.+.+..+.    .......|.|...+.            + ..+....+.+|+.+.|.|.+.+.|
T Consensus        77 I~~v-~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p  155 (238)
T 2p1y_A           77 LELA-TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSA  155 (238)
T ss_dssp             ESSC-CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTT
T ss_pred             EecC-CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCC
Confidence            9999 999999999999987542    112445677765431            2 224456788999999999999988


Q ss_pred             CceEEEEeCCc--ccC------------CCcceEEec-----CCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        141 IESITWQKGVQ--QLP------------LNRRQKVFP-----NGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       141 ~~~i~W~~~~~--~~~------------~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .+.+.|++++.  ...            ...++.+..     ..+|.|.++.. +|+|.|+|.+.|..
T Consensus       156 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          156 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GDSATYFCAAIDTN  222 (238)
T ss_dssp             CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG-GGCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH-HHCEEEEEEEeeCC
Confidence            89999999642  110            112233221     24799999997 99999999999873

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.87  E-value=1.1e-21  Score=146.77  Aligned_cols=215  Identities=15%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeC--CEeC-cCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLD--GYPL-AGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +...|.+..+.+|+++.|+|.+.. +.+ .+.|...  ...+ ..+                        ..-..+.|.+
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g------------------------~~~~~~~l~~   56 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG------------------------NNRKVYELSN   56 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSC------------------------SSEEEEEEES
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCC------------------------CceEEEEEEe
Confidence            456778889999999999999864 444 4888642  1111 000                        0011367777


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCc-ccCc--eEEEEeCCcccCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAG-YPIE--SITWQKGVQQLPL  155 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~--~i~W~~~~~~~~~  155 (258)
                      + +.  .|.|+|.+.... ......+.|.|+.+|....  .....+.+|+.++|.|.+.+ .|..  .|+|++++..+..
T Consensus        57 v-~~--~~~y~C~~~~~~-~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~  132 (291)
T 1mq8_A           57 V-QE--DSQPMCYSNCPD-GQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR  132 (291)
T ss_dssp             C-CS--CCCCEEEEECSS-CEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEE
T ss_pred             c-cc--CCeEEEEEEcCC-ccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeec
Confidence            7 53  357999997543 3444777889987764322  22244788999999999977 4544  6899999977653


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC-------CccceEEEEeecCCcccc-CCCCCccCCCCeeeEEEE
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-------SSSQNVHISVTVPPKIAP-FEFQPDLHSGDRAGVQCL  227 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~-------~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~  227 (258)
                      ..........++.+... ++++++.|+|+|.+..+.       ..+....|.|.++|.... ......+.+|+.++|.|.
T Consensus       133 ~~~~~~~~~~~l~~~~~-~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~  211 (291)
T 1mq8_A          133 EPAVGEPAEVTTTVLVR-RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS  211 (291)
T ss_dssp             EECCBTTEEEEEECCCS-SSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------
T ss_pred             ccCCCCCceEEEEeeee-eccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEE
Confidence            32110011123444444 336667999999987542       235677888888764322 121235788999999999


Q ss_pred             eccCCCCc--eeEEEECCEecccc
Q psy14532        228 VTKGDPPL--TISWLKNGLPILSA  249 (258)
Q Consensus       228 ~~~~~p~~--~~~W~~~g~~l~~~  249 (258)
                      +.+.+|++  .+.|+++|+.+...
T Consensus       212 ~~g~~P~~~~~v~w~~~g~~l~~~  235 (291)
T 1mq8_A          212 LDGLFPVSEAQVHLALGDQRLNPT  235 (291)
T ss_dssp             ------------------------
T ss_pred             cCCCCCCcccEEEEEECCEecCce
Confidence            95334543  69999999998753

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.87  E-value=2.9e-21  Score=142.61  Aligned_cols=183  Identities=13%  Similarity=0.135  Sum_probs=115.7

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeee----eCCc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVF----PNGT   75 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~   75 (258)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|+|..  ......   ..... .........+..|..+.    .+.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   78 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLM---ATSNEGSKATYEQGVEKDKFLINHASLTLST   78 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEE---EEECTTSCCEECTTCCGGGEEEEEEETTEEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEE---EEEccCCCceecCcccCCcEEEEecCCCEEE
Confidence            45677888899999999999999998888899999831  110000   00000 00000111111222222    2347


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc---ceeeceEEEEEec------CCeec--cCCCcceecCCcEEEEeeeCcccCc--
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTG------APFVR--PMGNVSAIAGEPLYLGCPVAGYPIE--  142 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~--  142 (258)
                      |.|.++ +.+|+|.|+|.+.+..+   ........|.|..      +|.+.  .+....+..|+.+.|.|.+.+.+++  
T Consensus        79 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  157 (246)
T 4dzb_B           79 LTVTSA-HPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  157 (246)
T ss_dssp             EEECSC-CGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEECCC-CHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCce
Confidence            999999 99999999999987543   1222455677764      23222  1233345669999999999886654  


Q ss_pred             eEEEEeCCcccCCCcceEEe--------cCC------eEEEEecccCCC-CcEEEEEEEeCCC
Q psy14532        143 SITWQKGVQQLPLNRRQKVF--------PNG------TLLIENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       143 ~i~W~~~~~~~~~~~~~~~~--------~~~------~l~i~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                      .+.|++++..+.........        .++      .|.|..... +| +|.|+|.|.|...
T Consensus       158 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          158 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             EEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH-TCTTCEEEEEEEECCB
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHh-ccCCCeEEEEEEecCC
Confidence            89999998877643221110        123      367777766 66 9999999999764

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=5.8e-21  Score=143.85  Aligned_cols=193  Identities=15%  Similarity=0.241  Sum_probs=119.9

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      ...|..+.+.+|++|+|.|.+.+.+  .+.+.|+|++  ..+..-.  .....+........+..|..+..     +.+|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL  107 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIG--WIDPENGDTEYAPKFQGKATFTTDTSSNTAYL  107 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEE--EEETTTTEEEECGGGBTTEEEEEETTTTEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEE--EEecCCCccccCchhcCcEEEEEecCCCeEEE
Confidence            4567788899999999999998764  5789999963  1110000  00000000000111122222222     3579


Q ss_pred             EEeecccCCCceEEEEEEEeCCc---c-eeeceEEEEEecCC---------------eec-cCCCcceecCCcEEEEeee
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG---R-SSSQNVHISVTGAP---------------FVR-PMGNVSAIAGEPLYLGCPV  136 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~---~-~~~~~~~l~v~~~~---------------~~~-~~~~~~~~~g~~~~l~C~~  136 (258)
                      .|.++ +.+|+|.|+|.+.+..+   . .....+.|.|...+               .+. .+....+.+|++++|.|.+
T Consensus       108 ~I~~v-~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  186 (282)
T 1qok_A          108 QLSSL-TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSA  186 (282)
T ss_dssp             EECSC-CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             EECcC-ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEe
Confidence            99999 99999999999998764   1 12244567776543               111 2344568899999999999


Q ss_pred             CcccCceEEEEe--CCcccC------------CCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        137 AGYPIESITWQK--GVQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       137 ~~~~~~~i~W~~--~~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      .+.+ +.+.|++  ++..+.            ...++...   ...+|.|.++.. +|+|.|+|.+.+...........|
T Consensus       187 ~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l  264 (282)
T 1qok_A          187 SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA-EDAATYYCQQRSSYPLTFGAGTKL  264 (282)
T ss_dssp             SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEEEEECSSSSCEECCCEEE
T ss_pred             cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh-hHCEEEEEEEeeCCCceEeCCEEE
Confidence            9888 8999999  454431            11233222   223699999997 999999999987533223344556


Q ss_pred             Eeec
Q psy14532        200 SVTV  203 (258)
Q Consensus       200 ~v~~  203 (258)
                      .|..
T Consensus       265 ~V~~  268 (282)
T 1qok_A          265 ELKR  268 (282)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            6643

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.87  E-value=3.4e-22  Score=146.45  Aligned_cols=182  Identities=14%  Similarity=0.226  Sum_probs=95.8

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|+|++  ........... .....  ...++... ....+.+|.|.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~--~~~r~~~~-~~~~~~~L~I~~   99 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGN-TLRPG--VPSRFSSS-GYGTDFVFTIEN   99 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTS-CBCTT--SCTTCCCC-EEEEEEEEC---
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCC-ccCCC--CCccEEee-ccCCEEEEEECC
Confidence            44566688888999999999999988777789999853  11100000000 00000  00011111 112344799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEEEeCCcccC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKGVQQLP  154 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~~~~~~  154 (258)
                      + +.+|+|.|+|.+.+..+........|.|..   +|.+.. ........|+.+.|.|.+.+. |.+ .+.|++++..+.
T Consensus       100 v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  178 (233)
T 3bqu_C          100 M-LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  178 (233)
T ss_dssp             ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----
T ss_pred             C-CHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCC
Confidence            9 999999999999887653322333455553   343332 233334479999999999885 443 799999998765


Q ss_pred             CC-cc-eEE--ecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        155 LN-RR-QKV--FPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       155 ~~-~~-~~~--~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .. .. ...  ..+      ..|.|.++.. +|+|.|+|.|.|...
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          179 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTS  223 (233)
T ss_dssp             CCEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCCEEEEEEEC--
T ss_pred             CCceEecCCccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCC
Confidence            44 11 001  111      2577888876 899999999999753

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.87  E-value=1.7e-20  Score=135.84  Aligned_cols=176  Identities=18%  Similarity=0.216  Sum_probs=111.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEee-cC-CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLL   77 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~-~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~   77 (258)
                      +.. |.++.+.+|++++|.|.+.+ .+ .+.+.|+|++  ..+........       .....+..+....   .+.+|.
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~-------~~~~~~~~r~~~~~~~~~~~L~   75 (216)
T 2xzc_L            4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNN-------KRPSGIPDRFSGSKSGTSATLG   75 (216)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTT-------BCCTTCCTTEEEEEETTEEEEE
T ss_pred             EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecC-------ccCCCCCCceEEeccCCEEEEE
Confidence            444 67788999999999999543 32 5789999853  11110000000       0000111122221   234799


Q ss_pred             EeecccCCCceEEEEEEEeCCc-ceeeceEEEEEec---CCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEEEEeCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTG---APFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKGV  150 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~~~  150 (258)
                      |.++ +.+|+|.|+|.+.+..+ ........|.|..   +|.+.. ........|+.+.|.|.+.+ .|.+ .+.|++++
T Consensus        76 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g  154 (216)
T 2xzc_L           76 ITGL-QTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN  154 (216)
T ss_dssp             ECSC-CGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ECCC-CcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECC
Confidence            9999 99999999999999765 2222445677753   333332 22223346889999999988 4554 89999999


Q ss_pred             cccCCC-cc-eEE--ecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        151 QQLPLN-RR-QKV--FPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       151 ~~~~~~-~~-~~~--~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..+... .. ...  ..+      +.|.|.++.. +|+|.|+|.|.|...
T Consensus       155 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          155 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGL  203 (216)
T ss_dssp             EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTC
T ss_pred             eecCCCeeEecCcccCCCCCEEEEEEEEECHHHh-CCCCcEEEEEEcCCC
Confidence            877654 11 111  112      2588888887 999999999999764

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.87  E-value=3.8e-21  Score=139.54  Aligned_cols=179  Identities=20%  Similarity=0.304  Sum_probs=110.7

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.....  ....+........+..|..+..     +++|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~--~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGW--INPYTGESTFADDFKGRFAFFLETSATTAYLQ   82 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEE--ECSSSCCEEECGGGCSSEEEEEEGGGTEEEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEE--EecCCCceEeCcccCCcEEEEEecCCCEEEEE
Confidence            456678899999999999998764  678999986  322110000  0000000000111222222222     35899


Q ss_pred             EeecccCCCceEEEEEEEeCCcc---eeeceEEEEEecC----Ceec-cCCCcceecCCcEEEEeeeCc-ccCc-eEEEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTGA----PFVR-PMGNVSAIAGEPLYLGCPVAG-YPIE-SITWQ  147 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~  147 (258)
                      |.++ +.+|+|.|+|.+.+..+.   .....+.|.|...    |.+. ..+...+..|+.+.|.|.+.+ .|.+ .+.|+
T Consensus        83 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  161 (219)
T 1c1e_H           83 INNL-KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (219)
T ss_dssp             ECSC-CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             ECCC-CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence            9999 999999999999987631   2224567777653    3222 122334668999999999988 7888 99999


Q ss_pred             eCCcccCCCcceE-E-----ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        148 KGVQQLPLNRRQK-V-----FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       148 ~~~~~~~~~~~~~-~-----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +++..+....... .     ...+.|.|. ... .|.|.|+|.|.|..+
T Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~~s~L~i~-~~~-~d~g~Y~C~a~n~~~  208 (219)
T 1c1e_H          162 SGSLSSGVHTFPAVLQSDLYTLSSSVTVP-SSP-RPSETVTCNVAHPAS  208 (219)
T ss_dssp             GGTBCTTEEECCCEESSSCEEEEEEEEEE-SSS-TTTSCCEEEEEEGGG
T ss_pred             eCCcccceEecCCcccCCeEEEEEEEEEe-ccc-CCCCEEEEEEEeCCC
Confidence            9887643111100 0     112357774 333 466999999999765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.87  E-value=3.3e-21  Score=135.17  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=110.2

Q ss_pred             eeeeecCCCceEEEEEEe--ecCCCeEEEee--CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532         10 IQQTLQPGPPVSLKCIAT--GNPTPHISWKL--DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~--~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ..+.+.+|++|+|.|...  +.+.+.|.|++  ++..+.......      .   ......|..+..+++|.|.++ +..
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~------~---~~~~~~R~~~~~ngsL~I~~v-~~~   76 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEK------E---TFKEKDTYKLFKNGTLKIKHL-KTD   76 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGG------C---EEESCTTEEECTTSCEEECSC-CGG
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCcc------C---CCCCCCeEEECCCCCEEECCC-Chh
Confidence            457788999999999542  24467999999  776553210000      0   001234555667899999999 999


Q ss_pred             CceEEEEEEEeCCccee-eceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC
Q psy14532         86 DRGVYWCTATNKQGRSS-SQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN  164 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  164 (258)
                      |+|.|+|.+.+..+... ...+.|.|..+..    .+.....+..+.|.|.+.+.|.+.+.|++++..+ ..      ..
T Consensus        77 DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~----~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~------~~  145 (182)
T 1hnf_A           77 DQDIYKVSIYDTKGKNVLEKIFDLKIQERVS----KPKISWTCINTTLTCEVMNGTDPELNLYQDGKHL-KL------SQ  145 (182)
T ss_dssp             GCEEEEEEEEETTSCEEEEEEEEEEEECCCC----CCEEEEETTTTEEEEECSSCSSCEEEEEESSCEE-EE------ES
T ss_pred             hCEEEEEEEEeCCCceeEEEEEEEEEcCcCC----CCEEEEccCcEEEEeEccCCCCCEEEEEECCEEC-CC------CC
Confidence            99999999999877643 2567788875421    1111123447999999998888999999998876 11      22


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ..+.+.. .. +|.|.|+|.|.|..+..
T Consensus       146 ~~i~~~~-~~-~d~G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          146 RVITHKW-TT-SLSAKFKCTAGNKVSKE  171 (182)
T ss_dssp             SCEEEEC-CS-CEEEEEEEEEECSSCEE
T ss_pred             cEEEEec-cc-CCCcEEEEEEEeCCCCc
Confidence            3344433 34 89999999999998743

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.86  E-value=2.2e-21  Score=141.51  Aligned_cols=178  Identities=18%  Similarity=0.283  Sum_probs=106.1

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeee-----eCCcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVF-----PNGTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~l   76 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|.+  ..+..-   ..... +........+..|..+.     .+.+|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWI---GNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYM   81 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEE---EEEeccCCceeeCCccCCcEEEEEeCCCCeEEE
Confidence            446678899999999999998765  5789999853  211000   00000 00000011122233332     24579


Q ss_pred             EEeecccCCCceEEEEEEEeCCcceeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEEEeC
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKG  149 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~  149 (258)
                      .|.++ +.+|+|.|.|.+.+...........|.|..    +|.+.. .....+..|+.+.|.|.+.+. |.+ .+.|+++
T Consensus        82 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  160 (227)
T 1mju_H           82 QLSSL-TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSG  160 (227)
T ss_dssp             EECSC-CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EECCC-CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecC
Confidence            99999 999999999999986432222445777764    232221 222345679999999999885 766 9999998


Q ss_pred             CcccCCC--cce----EEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        150 VQQLPLN--RRQ----KVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       150 ~~~~~~~--~~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..+...  ...    .....+.|.|..+.. +| |.|+|.|.|...
T Consensus       161 g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~  205 (227)
T 1mju_H          161 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPAS  205 (227)
T ss_dssp             TBCTTEEECCCEEETTEEEEEEEEEECTTTT-TT-SCCEEEEEEGGG
T ss_pred             CCcCCcEECCceecCCeEEEEEEEEEchhhc-CC-CeEEEEEEECCC
Confidence            8764211  111    111234577777765 67 999999999654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=1.6e-20  Score=138.73  Aligned_cols=176  Identities=18%  Similarity=0.272  Sum_probs=114.0

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecC-----CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eC
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PN   73 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   73 (258)
                      .+...|.++.+.+|++|+|.|.+.+.+     .+.+.|+|..  ..+...      ..... .....+..|....   ..
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~-~~~~~~~~r~~~~~~~~~   75 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLL------IYKVS-NRFSGVPDRFSGSGSGTD   75 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEE------EETTT-EECTTCCTTEEEEEETTE
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEE------EEEec-ccCCCCCCcEEeccCCCE
Confidence            466778889999999999999998876     6799999842  111000      00000 0000011121111   23


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC--------------eeccCCCcceecCCcEEEEeeeCcc
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--------------FVRPMGNVSAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--------------~~~~~~~~~~~~g~~~~l~C~~~~~  139 (258)
                      .+|.|.++ +.+|+|.|.|.+.+..+........|.|..++              .+.......+.+|+.++|.|.+.+.
T Consensus        76 ~~L~I~~v-~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  154 (247)
T 1svz_A           76 FTLKISRV-EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNY  154 (247)
T ss_dssp             EEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred             EEEEECCC-CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCc
Confidence            47999999 99999999999998755433244567776532              2223344568899999999999876


Q ss_pred             c--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        140 P--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       140 ~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +  .+.+.|+++.  ....                 ...++.+..     ..+|.|.+++. +|+|.|+|.+.|.
T Consensus       155 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~n~  228 (247)
T 1svz_A          155 AFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN-EDTATYFCVRDRH  228 (247)
T ss_dssp             CGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEEEG
T ss_pred             ccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh-hHCEEEEEEEecc
Confidence            4  5699999963  2110                 122333321     23799999997 9999999999985

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.86  E-value=3.7e-21  Score=143.65  Aligned_cols=154  Identities=23%  Similarity=0.386  Sum_probs=114.1

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      +.+..+.+|+.+.|.|.+.  |.+.+.|  +|..+....                        ..+.|.|..+ ..+|.|
T Consensus       105 ~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~------------------------~~~~l~i~~~-~~~~~g  155 (265)
T 2oz4_A          105 LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG------------------------PRAQLLLKAT-PEDNGR  155 (265)
T ss_dssp             ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS------------------------SEECCEEECC-GGGTTE
T ss_pred             cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC------------------------CcEEEEEccc-cccCCc
Confidence            4566788999999999988  7889999  666552210                        1246778888 899999


Q ss_pred             EEEEEEEeCC-ccee--eceEEEEEecCCeecc---CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe
Q psy14532         89 VYWCTATNKQ-GRSS--SQNVHISVTGAPFVRP---MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF  162 (258)
Q Consensus        89 ~Y~C~~~~~~-~~~~--~~~~~l~v~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~  162 (258)
                      .|+|.+.+.. |...  +..+.|.|..+|.+..   +....+.+|+.+.|.|.+.|.|.+.+.|++++..+        .
T Consensus       156 ~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~--------~  227 (265)
T 2oz4_A          156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP--------L  227 (265)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE--------C
T ss_pred             eEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc--------C
Confidence            9999998644 4432  2667788876664432   23457889999999999999999999999998721        2


Q ss_pred             cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       163 ~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      ..+.+.  .+.. +|+|.|+|.|.|..| ..+..+.|.|.+
T Consensus       228 ~~g~~~--~v~~-~d~G~Y~C~a~N~~G-~~~~~~~l~V~~  264 (265)
T 2oz4_A          228 PIGESV--TVTR-DLEGTYLCRARSTQG-EVTREVTVNVLS  264 (265)
T ss_dssp             CTTSCE--ECCG-GGCEEEEEEEEETTE-EEEEEEEEEEEC
T ss_pred             CCCcEE--Eeeh-hhCeEEEEEEECCCC-cEEEEEEEEEec
Confidence            233332  3666 899999999999887 455677777764

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.86  E-value=1.3e-20  Score=136.77  Aligned_cols=181  Identities=19%  Similarity=0.318  Sum_probs=112.3

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  .....-.  .....+........+..|..+..     +.+|.
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (220)
T 2fbj_H            5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIG--EIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQ   82 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE--EECTTSSCEEECTTTTTTEEEEECSSSCEEEEE
T ss_pred             ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEE--EEccCCCceecCCccCCcEEEEeeCCCCEEEEE
Confidence            345668899999999999998754  5689999853  1110000  00000000001111223333332     34799


Q ss_pred             EeecccCCCceEEEEEEEeCCcc--eeeceEEEEEecC----CeeccCCCcceecCCcEEEEeeeCcc-cC--ceEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTGA----PFVRPMGNVSAIAGEPLYLGCPVAGY-PI--ESITWQK  148 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~i~W~~  148 (258)
                      |.++ +.+|+|.|.|.+.+..+.  .......|.|...    |.+.......+..|+.+.|.|.+.+. |.  +.+.|++
T Consensus        83 I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           83 MSKV-RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             ECSC-CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             ECCC-ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            9999 999999999999987543  1224457777642    33322223345689999999999885 65  6999999


Q ss_pred             CCcccCCC-cceEEecCC------eEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        149 GVQQLPLN-RRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       149 ~~~~~~~~-~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ++..+... .......++      .|.|.+... +|.|.|+|.|.|..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~ytC~v~n~~~~  210 (220)
T 2fbj_H          162 SGKDITTVNFPPALASGGRYTMSNQLTLPAVEC-PEGESVKCSVQHDSNP  210 (220)
T ss_dssp             CCSSCEEEECCCEECSSSCEEEEEEEEECGGGS-CTTCEEEEEEEETTSC
T ss_pred             CCEecceEecCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEcCCCc
Confidence            88765210 111111222      367766665 7899999999998764

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.86  E-value=8.8e-21  Score=141.13  Aligned_cols=183  Identities=19%  Similarity=0.228  Sum_probs=106.3

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCcccccee-cccceeeccccccce-----eeee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQ-----KVFP   72 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~   72 (258)
                      ++|.+...+.++.+.+|++|+|.|.+.+.+.+.+.|+|.  +......   .... ..........+..+.     ....
T Consensus         1 ~s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   77 (259)
T 3omz_A            1 MSSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRL---LYYDSYTSSVVLESGISPGKYDTYGSTRK   77 (259)
T ss_dssp             ----------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEE---EEEETTTCCEEECTTCCBTTEEEECC--C
T ss_pred             CccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEE---EEEecCcCccccCCCCCcceeEeecCCCC
Confidence            367888888999999999999999998888889999983  1111000   0000 000000111111111     1123


Q ss_pred             CCcEEEeecccCCCceEEEEEEEeCCcc--eeeceEEEEEecC-----------------Ce-eccCCCcceecCCcEEE
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTGA-----------------PF-VRPMGNVSAIAGEPLYL  132 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~-----------------~~-~~~~~~~~~~~g~~~~l  132 (258)
                      +.+|.|.++ +.+|+|.|.|.+.+..+.  .......|.|...                 +. ...+....+.+|++++|
T Consensus        78 ~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  156 (259)
T 3omz_A           78 NLRMILRNL-IENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTL  156 (259)
T ss_dssp             CCEEEESSC-CGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEE
T ss_pred             eEEEEECCC-CcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEE
Confidence            457999999 999999999999987542  2235566777653                 12 22345577889999999


Q ss_pred             EeeeCcc-cCceEEEEeCCc--ccC------------CCcceEEe-----cCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        133 GCPVAGY-PIESITWQKGVQ--QLP------------LNRRQKVF-----PNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       133 ~C~~~~~-~~~~i~W~~~~~--~~~------------~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      .|.+.+. +.+.+.|+++..  ...            ...++.+.     ....|.|.+++. +|+|.|.|.+...
T Consensus       157 ~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~  231 (259)
T 3omz_A          157 NCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQL-EDSAKYFCALGES  231 (259)
T ss_dssp             CCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCG-GGCSEEEEEEESC
T ss_pred             EEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCCh-hHCEEEEEEEeCc
Confidence            9988764 778999998532  110            01223222     123599999998 9999999999853

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.86  E-value=8.7e-22  Score=152.21  Aligned_cols=161  Identities=23%  Similarity=0.367  Sum_probs=119.7

Q ss_pred             eeecCCCceEEEEE-----EeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532         12 QTLQPGPPVSLKCI-----ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus        12 ~~~~~g~~v~l~C~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      ..+.+|+++.|.|.     +.+.|.+.+.|+|++..+....  .++...               ...++|.|.++ +..|
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~--~~~~~~---------------~~~~~L~i~~v-~~~d  191 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN--EKFLSV---------------RGTTHLLVHDV-ALED  191 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC--SSEEEC---------------TTSSEEEESSC-CGGG
T ss_pred             eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC--ceeEEc---------------CCcceEEEccc-CHhh
Confidence            46789999999999     6778888999999988775431  111111               12357999999 9999


Q ss_pred             ceEEEEEEEeCCcc---eeeceEEEEEecC-----Cee-ccCCCcceecCCcEEEEeee---Cccc-CceEEEEeCCccc
Q psy14532         87 RGVYWCTATNKQGR---SSSQNVHISVTGA-----PFV-RPMGNVSAIAGEPLYLGCPV---AGYP-IESITWQKGVQQL  153 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~---~~~~~~~l~v~~~-----~~~-~~~~~~~~~~g~~~~l~C~~---~~~~-~~~i~W~~~~~~~  153 (258)
                      +|.|+|.+.+..+.   ..+..+.|.|...     |.+ ..+....+..|+.+.|.|.+   .+.| .+.+.|++++..+
T Consensus       192 ~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~  271 (339)
T 3o4o_C          192 AGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHI  271 (339)
T ss_dssp             CEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCS
T ss_pred             CeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeec
Confidence            99999999997764   2336777888643     232 23445578889999999999   8888 8899999988765


Q ss_pred             CC---------CcceEEecCC------eEEEEecccCCCC-cEEEEEEEeCCCC
Q psy14532        154 PL---------NRRQKVFPNG------TLLIENVQKDHDR-GVYWCTATNKQGR  191 (258)
Q Consensus       154 ~~---------~~~~~~~~~~------~l~i~~~~~~~~~-g~y~C~~~~~~~~  191 (258)
                      ..         ..+.....++      .|.|.++.. +|. |.|+|.|.|..|.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~  324 (339)
T 3o4o_C          272 ESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTR-EDLHMDFKCVVHNTLSF  324 (339)
T ss_dssp             SSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCC-CSCCCCCEEEEEETTEE
T ss_pred             ccccccccceecceEEecccCceEEEEEEEEEEech-hhcCccEEEEEEeccCc
Confidence            32         1222233344      699999997 886 9999999999874

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=140.05  Aligned_cols=173  Identities=17%  Similarity=0.304  Sum_probs=109.9

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      ..+..+.+.+|++|+|.|.+.+.  +.+.+.|+|..  .....      . +............+....   .+.+|.|.
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~------~-~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   79 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKL------L-IYDNNQRPSGVPDRFSGSKSGTSASLAIT   79 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEE------E-EBTTTBCCTTCCTTEEEEEETTEEEEEEC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEE------E-EEecCCCCCCcCCcEEEEccCCEEEEEEC
Confidence            34556889999999999999876  67899999852  11100      0 000000000111121111   13369999


Q ss_pred             ecccCCCceEEEEEEEeCCcc--eeeceEEEEEecCC---------------------eeccCCCcceecCCcEEEEeee
Q psy14532         80 NVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTGAP---------------------FVRPMGNVSAIAGEPLYLGCPV  136 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~---------------------~~~~~~~~~~~~g~~~~l~C~~  136 (258)
                      ++ +.+|+|.|+|.+.+..+.  .......|.|...+                     .+.......+.+|+.++|.|.+
T Consensus        80 ~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~  158 (256)
T 3ux9_B           80 GL-QSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAA  158 (256)
T ss_dssp             SC-CGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEE
T ss_pred             CC-ChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEE
Confidence            99 999999999999986432  22245667776543                     2223344568899999999999


Q ss_pred             Cccc--CceEEEEeCC--cccC-----------------CCcceEEecC-----CeEEEEecccCCCCcEEEEEEEeC
Q psy14532        137 AGYP--IESITWQKGV--QQLP-----------------LNRRQKVFPN-----GTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       137 ~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      .+.+  .+.+.|+++.  ..+.                 ...++.+..+     .+|.|.+++. +|+|.|+|.+.+.
T Consensus       159 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          159 SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA-EDTAVYYCARYID  235 (256)
T ss_dssp             ESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEEEET
T ss_pred             eCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh-hhCEEEEEEEEcC
Confidence            8755  6799999863  2210                 1113333221     2499999998 9999999999986

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.86  E-value=8.4e-21  Score=137.98  Aligned_cols=179  Identities=17%  Similarity=0.248  Sum_probs=111.0

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceeccc--ceeeccccccceeeee-----CCc
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGE--ARVQQLPLNRRQKVFP-----NGT   75 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~   75 (258)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|..  .....-.  .....+.  .......+..|..+..     +.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   82 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLG--FIRNKANGYTTEYSPSVKGRFTISRDNSQSILY   82 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEE--EECCGGGTTCEEECTTTBTTEEEEEETTTTEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEE--EEccCCcccccccCcccCCceEEEEECCCCeEE
Confidence            345677899999999999998754  6789999853  2110000  0000000  0001111222333322     347


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcc----eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eE
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SI  144 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i  144 (258)
                      |.|.++ +.+|+|.|.|.+.+..+.    .......|.|..    +|.+.. .....+..|+.+.|.|.+.+. |.+ .+
T Consensus        83 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  161 (222)
T 1q9r_B           83 LQMNTL-RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV  161 (222)
T ss_dssp             EEECSC-CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEECcC-CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEE
Confidence            999999 999999999999986531    111345677764    232221 222335679999999999885 877 99


Q ss_pred             EEEeCCcccCCCcceEE------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        145 TWQKGVQQLPLNRRQKV------FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .|++++..+........      ...+.|.|.++.. +| |.|+|.|.|..+
T Consensus       162 ~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-g~y~C~a~n~~~  211 (222)
T 1q9r_B          162 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPAS  211 (222)
T ss_dssp             EEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGGG
T ss_pred             EEecCCeEcceEeccccccCCcEEEEEEEEECchhc-CC-CeEEEEEEccCC
Confidence            99998876542211111      1123578877776 78 999999999876

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.86  E-value=9e-21  Score=133.09  Aligned_cols=161  Identities=18%  Similarity=0.233  Sum_probs=108.6

Q ss_pred             ceeeeecCCCceEEEEEEee-cCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceee-eeCCcEEEeecccCC
Q psy14532          9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKV-FPNGTLLIENVQKDH   85 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~   85 (258)
                      ...+.+.+|++|+|.|.+.. .+.+.+.|+|+ +..+.........     ......+..|..+ ..+++|.|.++ +..
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~-----~~~~~~~~~R~~l~~~~~sL~I~~v-~~~   79 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKK-----TVFESVFKDRVDLDKTNGALRIYNV-SKE   79 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCE-----EECSSTTTTTEEECTTTCCEEECSC-CGG
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCe-----eEcchhcCCeEEEeCCCccEEEcCC-CHH
Confidence            34678899999999998754 34679999995 3322211000000     0111233345444 46789999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCcccCCCcceEEecC
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPN  164 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~  164 (258)
                      |+|.|+|.+.+..  .....+.|.|..++.    .+.....++.+.|.|.+ .+ |.+.+.|++++..+.      ...+
T Consensus        80 D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~------~~~~  146 (180)
T 2dru_A           80 DRGDYYMRMLHET--EDQWKITMEVYEMVS----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR------SLRQ  146 (180)
T ss_dssp             GCEEEEEEEESSS--EEEEEEEEEEECCCC----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE------EESS
T ss_pred             HCeEEEEEEEcCC--eEEEEEEEEEECCCC----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc------CCCC
Confidence            9999999998766  333777888876421    11122345679999999 66 889999999998764      1234


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      .++.+..  . +|+|.|+|.|.|..+.
T Consensus       147 ~~l~~~~--~-~d~g~Y~C~a~N~~~~  170 (180)
T 2dru_A          147 KTMSYQW--T-NLRAPFKCKAVNRVSQ  170 (180)
T ss_dssp             SEEEEEC--S-CCSSCEEEEEEETTEE
T ss_pred             CEEEEEE--h-hcCccEEEEEecCcCc
Confidence            4555532  4 8999999999998763

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.86  E-value=2e-21  Score=140.27  Aligned_cols=176  Identities=15%  Similarity=0.211  Sum_probs=113.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      +.. +..+.+.+|++++|.|.+.+.+.+.+.|+|++  ..+........       .....+..+..+.   .+.+|.|.
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~-------~~~~~~~~r~~~~~~~~~~~L~I~   74 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDN-------KRPSGIPERFSGSTSGTTATLTIS   74 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTT-------BCCTTSCTTEEEEEETTEEEEEET
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEecc-------ccCCCccccEEEEeeCCEEEEEEC
Confidence            444 77889999999999999887777789999852  22110000000       0000111121111   23479999


Q ss_pred             ecccCCCceEEEEEEEeCCc--ceeeceEEEEEe----cCCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceEEEEeCC
Q psy14532         80 NVQKDHDRGVYWCTATNKQG--RSSSQNVHISVT----GAPFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESITWQKGV  150 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~  150 (258)
                      ++ +.+|+|.|+|.+.+...  ........|.|.    .+|.+.. .....+..|+.+.|.|.+.+. |. +.+.|++++
T Consensus        75 ~v-~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  153 (212)
T 1nfd_E           75 GA-QPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANG  153 (212)
T ss_dssp             TC-CGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETT
T ss_pred             cC-CcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECC
Confidence            99 99999999999996322  122244566664    2333332 333445679999999999886 54 799999998


Q ss_pred             cccCCCcceE--------EecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        151 QQLPLNRRQK--------VFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       151 ~~~~~~~~~~--------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..+.......        ....+.|.|.++.. +|+|.|+|.|.|...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~  200 (212)
T 1nfd_E          154 ATINDGVKTTKPSKQGQNYMTSSYLSLTADQW-KSHNRVSCQVTHEGE  200 (212)
T ss_dssp             EEECSSCBCCCCBCSSSCEEEEEBCCEEHHHH-HTCSCEEEEEECTTT
T ss_pred             eEcCCCeecCCceecCCCceEEEEEEEchhhc-CCCCeEEEEEEeCCc
Confidence            7765432110        11124588889887 899999999999865

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.86  E-value=1.9e-20  Score=140.87  Aligned_cols=196  Identities=16%  Similarity=0.212  Sum_probs=119.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCcccccee-cccceeeccccccceeeeeC----
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN----   73 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----   73 (258)
                      +.+.. +..+.+.+|++|+|.|.+.+.  +.+.+.|+|..  ......   .... ..........+..|..+..+    
T Consensus         2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   77 (280)
T 3fku_X            2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWL---GGISPMFGTPNYAQKFQGRVTITADQSTR   77 (280)
T ss_dssp             CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCC---EEECTTTCCEEECGGGTTTCEEEEETTTT
T ss_pred             CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEE---EEEeccCCccccCcccCCcEEEEEeCCCC
Confidence            34555 788999999999999999874  55789999842  111100   0000 00000111122233333322    


Q ss_pred             -CcEEEeecccCCCceEEEEEEEeC--------CcceeeceEEEEEec---------------CCeeccCCCcceecCCc
Q psy14532         74 -GTLLIENVQKDHDRGVYWCTATNK--------QGRSSSQNVHISVTG---------------APFVRPMGNVSAIAGEP  129 (258)
Q Consensus        74 -~~l~i~~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~~~~~~~~~~~~~~g~~  129 (258)
                       .+|.|.++ +.+|+|.|.|.+.+.        ..........|.|..               ++.+...+...+.+|++
T Consensus        78 ~~sL~I~~v-~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~  156 (280)
T 3fku_X           78 TAYMDLRSL-RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQT  156 (280)
T ss_dssp             EEEEEECSC-CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCC
T ss_pred             EEEEEECCC-ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCC
Confidence             37999999 999999999999886        122222455677765               33333333477889999


Q ss_pred             EEEEeeeCc-cc-CceEEEEeC--CcccC------------CCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        130 LYLGCPVAG-YP-IESITWQKG--VQQLP------------LNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       130 ~~l~C~~~~-~~-~~~i~W~~~--~~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ++|.|.+.+ .+ .+.+.|++.  +....            ...++....+   ..|.|.+++. +|+|.|.|.+.+..+
T Consensus       157 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~~~  235 (280)
T 3fku_X          157 ATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQP-EDEADYYCSTWDSSL  235 (280)
T ss_dssp             EEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCG-GGCSEEEEEEEETTT
T ss_pred             EEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCH-HHCEEEEEEEecCCC
Confidence            999999987 33 478999983  22211            1122222221   2499999997 999999999998652


Q ss_pred             --CCccceEEEEeecC
Q psy14532        191 --RSSSQNVHISVTVP  204 (258)
Q Consensus       191 --~~~~~~~~l~v~~~  204 (258)
                        ........|.|...
T Consensus       236 ~~~~~g~~t~l~V~~~  251 (280)
T 3fku_X          236 SAVVFGGGTKLTVLGQ  251 (280)
T ss_dssp             TEEEEBCCCEEEEC--
T ss_pred             CceEECCCEEEEECCC
Confidence              11233445555443

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.85  E-value=9.1e-20  Score=135.94  Aligned_cols=178  Identities=15%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecC------CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee--
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF--   71 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~------~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   71 (258)
                      .+.+...|..+.+.+|++|+|.|.+.+.+      .+.+.|+|.  +..+..-      ...... ....+..|....  
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l------~~~~~~-~~~~~~~R~~~~~~   77 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLL------ISWAFT-RKSGVPDRFTGSGS   77 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEE------EETTTE-ECTTSCTTEEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEE------EEeccc-CCCCCCccEEEecC
Confidence            45677888899999999999999998776      578999985  2211100      000000 000011122111  


Q ss_pred             -eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC--------------------eeccCCCcceecCCcE
Q psy14532         72 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--------------------FVRPMGNVSAIAGEPL  130 (258)
Q Consensus        72 -~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--------------------~~~~~~~~~~~~g~~~  130 (258)
                       ...+|.|.++ +.+|+|.|.|.+.+..+........|.|..++                    .+.......+.+|+++
T Consensus        78 ~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  156 (264)
T 2gjj_A           78 GTDFTLTIGSV-KAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASV  156 (264)
T ss_dssp             TTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCE
T ss_pred             CCEEEEEECCC-CHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcE
Confidence             2347999999 99999999999998754333244577776542                    1222334568899999


Q ss_pred             EEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEe-----cCCeEEEEecccCCCCcEEEEE
Q psy14532        131 YLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVF-----PNGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       131 ~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      +|.|.+.+.+  .+.+.|+++.  ....                 ...+..+.     ....|.|.++.. +|+|.|+|.
T Consensus       157 ~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~  235 (264)
T 2gjj_A          157 KISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS-EDSADYYCV  235 (264)
T ss_dssp             EEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEE
T ss_pred             EEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc-ccCEEEEEE
Confidence            9999998765  3799999963  2211                 01222222     123799999997 999999999


Q ss_pred             EEeC
Q psy14532        185 ATNK  188 (258)
Q Consensus       185 ~~~~  188 (258)
                      +.|.
T Consensus       236 a~n~  239 (264)
T 2gjj_A          236 RSGN  239 (264)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            9985

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.85  E-value=6.7e-21  Score=141.50  Aligned_cols=179  Identities=17%  Similarity=0.247  Sum_probs=115.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceee-----eeCCc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNGT   75 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   75 (258)
                      +++...+.++.+.+|++|+|.|.+.+.+.+.+.|+|..  ......   .......   .......+...     ..+.+
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~---~~~~~~~r~~~~~~~~~~~~s   77 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQML---LKYYSGD---PVVQGVNGFEAEFSKSDSSFH   77 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEE---EEECSSC---SEEECSTTCEEEEETTTTEEE
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEE---EEEccCC---cccccCCCeEEEEcCCCCEEE
Confidence            45677788899999999999999998888999999842  111000   0000000   00001111111     12346


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcc---eeeceEEEEEec--------------------CCee-ccCCCcceecCCcEE
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTG--------------------APFV-RPMGNVSAIAGEPLY  131 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~--------------------~~~~-~~~~~~~~~~g~~~~  131 (258)
                      |.|.++ +.+|+|.|+|.+.+..+.   .......|.|..                    ++.+ ..+....+.+|+.++
T Consensus        78 L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~  156 (256)
T 3tf7_C           78 LRKASV-HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVT  156 (256)
T ss_dssp             EEESSC-CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEE
T ss_pred             EEECCC-CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEE
Confidence            999999 999999999999986532   122445677765                    2222 224455677999999


Q ss_pred             EEeeeCcccCceEEEEeCCcccC-----------------CCcceEEe----cCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        132 LGCPVAGYPIESITWQKGVQQLP-----------------LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       132 l~C~~~~~~~~~i~W~~~~~~~~-----------------~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |.|.+.+. .+.+.|++......                 ...++...    ...+|.|.++.. +|+|.|+|.+.|..+
T Consensus       157 L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          157 LSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASP-SQTSLYFCASSDAPG  234 (256)
T ss_dssp             ECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCG-GGCEEEEEEEEEETT
T ss_pred             EEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCH-HHCEEEEEEecCCCC
Confidence            99999876 67899998432110                 01112211    223699999998 999999999998754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.85  E-value=1.2e-20  Score=131.27  Aligned_cols=157  Identities=17%  Similarity=0.134  Sum_probs=106.0

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceee-eeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-FPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G   88 (258)
                      ..+.+.+|++|+|.|.+.+ +.+.+.|++++..+..... ....      ....+..|..+ ..+++|.|.++ +..|+|
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~-~~~~------~~~~~~~R~~~~~~~~sL~I~~v-~~~DsG   73 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELEN-SEFR------AFSSFKNRVYLDTVSGSLTIYNL-TSSDED   73 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEET-TEEE------ECGGGTTSEEECTTTCCEEECSC-CGGGCE
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcC-CCcc------cccccCCcEEEeCCCCeEEECCC-ChhhCc
Confidence            4567899999999998854 7889999998764332210 0000      01123333333 25789999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLL  168 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~  168 (258)
                      .|.|.+.+..+   ...+.|.|..++..   +.... ......|.|.+.+.|.+.+.|++++..+....      ...+.
T Consensus        74 ~Y~C~~~n~~~---~~~~~L~V~~~~~~---p~i~~-~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~------~~~l~  140 (171)
T 1ccz_A           74 EYEMESPNITD---TMKFFLYVLEMVSK---PMIYW-ECSNATLTCEVLEGTDVELKLYQGKEHLRSLR------QKTMS  140 (171)
T ss_dssp             EEEEECTTCCS---CEEEEEEEECCCCC---CEEEE-ETTTTEEEEECSSCSSCEEEEEETTEEEEEES------SSEEE
T ss_pred             eEEEEEeCCCC---cEEEEEEEECcCCC---CEEEE-ecCCcEEEEEeCCCCCcEEEEEECCEECcCCc------ceEEE
Confidence            99999988766   36778888765321   11111 11123799999988899999999988765321      22333


Q ss_pred             EEecccCCCCcEEEEEEEeCCCC
Q psy14532        169 IENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       169 i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.  .. .|.|.|+|.|.|..+.
T Consensus       141 ~~--~~-~~~g~Y~C~a~N~~~~  160 (171)
T 1ccz_A          141 YQ--WT-NLRAPFKCKAVNRVSQ  160 (171)
T ss_dssp             EE--CS-CCSSCEEEEEEETTEE
T ss_pred             Ee--cc-CCCceEEEEEEcccCc
Confidence            33  23 8899999999998763

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.85  E-value=2.9e-21  Score=140.01  Aligned_cols=176  Identities=15%  Similarity=0.205  Sum_probs=110.1

Q ss_pred             CCcceeeceeee--ecCCCceEEEEEEeec---C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc
Q psy14532          2 HPQLIYKFIQQT--LQPGPPVSLKCIATGN---P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT   75 (258)
Q Consensus         2 ~p~~~~~~~~~~--~~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (258)
                      +|.+...+....  +.+|++++|.|.+.+.   + .+.|.|+|++..+......  .        ...+.. ......++
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~--~--------~~~~~~-~~~~~~~~   77 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ--T--------HREDYN-STIRVVST   77 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE--E--------EEETTT-TEEEEEEE
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc--c--------ccccCC-CeEEEEEE
Confidence            566655555544  8899999999999886   3 3689999998766433100  0        000000 01112457


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcce-eeceEEE--EEecCCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHI--SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKG  149 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~~  149 (258)
                      |.|.++ +.+|+|.|+|.+.+..+.. ....+.+  .+..+|.+.. ........|+.+.|.|.+.| +|.+ .|+|+++
T Consensus        78 L~I~~~-~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~  156 (218)
T 2rgs_A           78 LPIQHQ-DWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSN  156 (218)
T ss_dssp             EECCHH-HHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEcHH-HcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEEC
Confidence            999999 9999999999999976543 1122211  2333443322 22222235899999999998 5655 9999999


Q ss_pred             CcccCCCcc--eEEecCCeEEE------EecccCCCCcEEEEEEEeCCC
Q psy14532        150 VQQLPLNRR--QKVFPNGTLLI------ENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       150 ~~~~~~~~~--~~~~~~~~l~i------~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..+.....  .....++++.+      ..... +|.|.|+|.|.|...
T Consensus       157 g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          157 GHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKW-EKTDSFSCNVRHEGL  204 (218)
T ss_dssp             TEEECCEEECCCEECTTSCEEEEEEEEEEHHHH-HHCSCEEEEEECTTS
T ss_pred             CEeccCceecccEECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEcCCC
Confidence            987643221  11234454433      33333 468999999999764

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.85  E-value=4.4e-20  Score=139.57  Aligned_cols=196  Identities=16%  Similarity=0.269  Sum_probs=117.3

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee-----eCCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  .....-.  ..............+..|..+.     .+.+|.
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  104 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIG--YINPYNDGTKYNEKFKGKATLTSDKSSSTAYME  104 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEE--EEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEE--EEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence            345678899999999999998765  5789999853  1110000  0000000000011111222221     135799


Q ss_pred             EeecccCCCceEEEEEEEeCC-c---ceeeceEEEEEec----------------CCeec-cCCCcceecCCcEEEEeee
Q psy14532         78 IENVQKDHDRGVYWCTATNKQ-G---RSSSQNVHISVTG----------------APFVR-PMGNVSAIAGEPLYLGCPV  136 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~-~---~~~~~~~~l~v~~----------------~~~~~-~~~~~~~~~g~~~~l~C~~  136 (258)
                      |.++ +.+|+|.|.|.+.+.. +   ........|.|..                .+.+. .+....+.+|+.++|.|.+
T Consensus       105 I~~v-~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  183 (291)
T 2gki_A          105 LSSL-TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS  183 (291)
T ss_dssp             ECSC-CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE
T ss_pred             ECcC-CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc
Confidence            9999 9999999999999874 1   1112345677765                12222 2334568899999999999


Q ss_pred             CcccCc------eEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        137 AGYPIE------SITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       137 ~~~~~~------~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      .+.+.+      .+.|+++.  ....            ...++....   ..+|.|.++.. +|+|.|+|.+.+......
T Consensus       184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~~~~~~~f  262 (291)
T 2gki_A          184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQA-EDLAVYYCKQSYYHMYTF  262 (291)
T ss_dssp             SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEEEEEEETTEEEE
T ss_pred             CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCH-HHCEEEEEEEccCCceEE
Confidence            887654      89999963  2211            012232211   23699999997 999999999998532122


Q ss_pred             cceEEEEeecCCc
Q psy14532        194 SQNVHISVTVPPK  206 (258)
Q Consensus       194 ~~~~~l~v~~~p~  206 (258)
                      ..-..|.|...+.
T Consensus       263 g~gt~l~v~~~~~  275 (291)
T 2gki_A          263 GSGTKLEIKHHHH  275 (291)
T ss_dssp             CCCEEEEEECC--
T ss_pred             cCCEEEEEEeeEc
Confidence            2334555555443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.85  E-value=2.5e-20  Score=139.39  Aligned_cols=181  Identities=14%  Similarity=0.171  Sum_probs=112.5

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccc-cceeee----eCCc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLN-RRQKVF----PNGT   75 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~   75 (258)
                      +.+...+..+.+.+|++|+|.|.+. .+.+.+.|+|.  +......   ... ..........+. .|..+.    .+++
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~---~~~-~~~~~~~~~~~~~~R~~~~~~~~~~~s  101 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFL---IYF-QGTGAADDSGLPNDRFFAVRPEGSVST  101 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEE---EEE-ETTEEEECTTCCSTTEEEECTTSSSEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEE---EEE-CCCCccccCCCccCcEEEEecCCCEEE
Confidence            4556677788899999999999976 56779999983  2211100   000 000000111111 222222    2567


Q ss_pred             EEEeecccCCCceEEEEEEEeC-CcceeeceEEEEEec------CCeec--cCCCcceecCCcEEEEeeeCcccCc--eE
Q psy14532         76 LLIENVQKDHDRGVYWCTATNK-QGRSSSQNVHISVTG------APFVR--PMGNVSAIAGEPLYLGCPVAGYPIE--SI  144 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~------~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~--~i  144 (258)
                      |.|.++ +.+|+|.|+|.+.+. ..........|.|..      +|.+.  .+....+..|+.++|.|.+.+.+++  .+
T Consensus       102 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v  180 (268)
T 3pl6_D          102 LKIQRT-ERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  180 (268)
T ss_dssp             EEECSC-CGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EEECCC-CcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEE
Confidence            999999 999999999999974 222222555677765      33222  2233345568999999999885544  89


Q ss_pred             EEEeCCcccCCCcceEE--------ecC------CeEEEEecccCCC-CcEEEEEEEeCCC
Q psy14532        145 TWQKGVQQLPLNRRQKV--------FPN------GTLLIENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~~~--------~~~------~~l~i~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                      .|++++..+........        ..+      ..|.|..... +| +|.|+|.|.|...
T Consensus       181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~-~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFW-QNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHH-SCTTCEEEEEEEECCB
T ss_pred             EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHh-ccCCCEEEEEEEcCCC
Confidence            99999887754321110        012      2356666655 55 9999999999754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.85  E-value=5.9e-20  Score=137.35  Aligned_cols=178  Identities=17%  Similarity=0.295  Sum_probs=111.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecC-----CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---   71 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   71 (258)
                      .+.+...+..+.+.+|++|+|.|.+.+.+     .+.+.|+|..  .....      ....... ....+..|....   
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~------l~~~~~~-~~~~~~~r~~~~~~~   87 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKV------LIYKVSN-RVSGVPDRFSGSGSG   87 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEE------EEETTTE-ECTTSCTTEEEEEET
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEE------EEEecCC-CCCCCcccEEEEcCC
Confidence            35567778889999999999999998765     4789999853  11100      0000000 000011122211   


Q ss_pred             eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe------------------------eccCCCcceecC
Q psy14532         72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF------------------------VRPMGNVSAIAG  127 (258)
Q Consensus        72 ~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------------------~~~~~~~~~~~g  127 (258)
                      .+.+|.|.++ +.+|+|.|+|.+.+..+........|.|...+.                        +..+....+.+|
T Consensus        88 ~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G  166 (268)
T 1x9q_A           88 TDFTLKINRV-EAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPG  166 (268)
T ss_dssp             TEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTT
T ss_pred             CEEEEEECCC-ChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCC
Confidence            2347999999 999999999999987543222345566654321                        112334578889


Q ss_pred             CcEEEEeeeCccc--CceEEEEeCC--ccc-------------------CCCcceEEec-----CCeEEEEecccCCCCc
Q psy14532        128 EPLYLGCPVAGYP--IESITWQKGV--QQL-------------------PLNRRQKVFP-----NGTLLIENVQKDHDRG  179 (258)
Q Consensus       128 ~~~~l~C~~~~~~--~~~i~W~~~~--~~~-------------------~~~~~~~~~~-----~~~l~i~~~~~~~~~g  179 (258)
                      +.++|.|.+.+.+  .+.+.|+++.  ..+                   ....++.+..     ..+|.|.+++. +|+|
T Consensus       167 ~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG  245 (268)
T 1x9q_A          167 GAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRV-EDTG  245 (268)
T ss_dssp             CCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG-GGCE
T ss_pred             CcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCH-HHCE
Confidence            9999999998765  3789999853  211                   0122333322     24699999997 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|+|.+.+.
T Consensus       246 ~Y~C~a~~~  254 (268)
T 1x9q_A          246 IYYCTGASY  254 (268)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEccC
Confidence            999999874

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=145.37  Aligned_cols=176  Identities=13%  Similarity=0.172  Sum_probs=108.5

Q ss_pred             eeeecCCCceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ...+.+|+.+.|.|.+.+.+.+  .+.|++++..+.....  .....         ...........|.|... ..+|.|
T Consensus       126 ~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~--~~~~~---------~~~~~~~~~s~L~i~~~-~~d~~g  193 (327)
T 2wng_A          126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT--NVDPV---------GESVSYSIHSTAKVVLT-REDVHS  193 (327)
T ss_dssp             SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEE--EEECS---------SCCSCEEEEEEEEEECC-TTGGGC
T ss_pred             ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccc--ccccc---------cCCCceEEEEEEEEech-hcCcCc
Confidence            3668899999999999987655  8999999988765421  00000         00001111235667766 677789


Q ss_pred             EEEEEEEeCCcce--eeceEEE--EEecCCeeccCCCcceecCCcEEEEeeeCccc-Cc-eEEEEeCCcccCCCc--ceE
Q psy14532         89 VYWCTATNKQGRS--SSQNVHI--SVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP-IE-SITWQKGVQQLPLNR--RQK  160 (258)
Q Consensus        89 ~Y~C~~~~~~~~~--~~~~~~l--~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~-~i~W~~~~~~~~~~~--~~~  160 (258)
                      .|+|.+.+..+..  ......+  .+..+|.+...... +.+|+.+.|.|.+.+.+ ++ .+.|++++..+....  ...
T Consensus       194 ~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  272 (327)
T 2wng_A          194 QVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVT  272 (327)
T ss_dssp             EEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCE
T ss_pred             eEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceE
Confidence            9999999977653  1123333  23444443332222 67899999999999854 44 899999998765321  122


Q ss_pred             EecCC------eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        161 VFPNG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       161 ~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      ...++      .|.|..+.. +|.|.|+|.|.|..+...++.+.+.
T Consensus       273 ~~~~g~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~~~~~s~~~~~~  317 (327)
T 2wng_A          273 ENKDGTYNWMSWLLVNVSAH-RDDVKLTCQVEHDGQPAVSKSHDLK  317 (327)
T ss_dssp             ECTTSCEEEEEEEEC--------CCEEEEEEEETTCCCEEEEEECC
T ss_pred             ECCCCcEEEEEEEEEccccc-cCCCEEEEEEEeCCCCCchhheEEE
Confidence            22333      366777776 8999999999999876555555443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.85  E-value=1.6e-19  Score=131.17  Aligned_cols=178  Identities=18%  Similarity=0.272  Sum_probs=109.7

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceec---ccceeeccccccceeeeeC-----C
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRI---GEARVQQLPLNRRQKVFPN-----G   74 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~   74 (258)
                      ..+..+.+.+|++|+|.|.+.+.  +...+.|+|..  ......   .....   +........+..|..+..+     .
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWV---GRIKRNAESDATAYAASMRGRLTISRDDSKNTA   81 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEE---EEECCGGGTTCEEECGGGTTSEEEEEEGGGTEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEE---EEEcccccCcccccCccccccEEEEecCCCCEE
Confidence            45566889999999999999864  35689999842  111000   00000   0001111122233333322     3


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCc-ceeeceEEEEEec----CCeec-cCCCcceecCCcEEEEeeeCc-ccC--ceEE
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYLGCPVAG-YPI--ESIT  145 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~  145 (258)
                      +|.|.++ +.+|+|.|.|.+.+... ........|.|..    +|.+. ...... ..|+.+.|.|.+.+ .|.  +.+.
T Consensus        82 sL~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           82 FLQMNSL-KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EEEECSC-CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EEEECCC-CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEE
Confidence            6999999 99999999999988641 2222445677752    22222 112222 68899999999988 665  4899


Q ss_pred             EEeCCcccCCCcce--------EEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        146 WQKGVQQLPLNRRQ--------KVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       146 W~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |++++..+......        .....+.|.|.+... +|+|.|+|.|.+..+
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~ytC~v~~~~~  211 (221)
T 3m8o_H          160 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQC-LAGKSVTCHVKHYTN  211 (221)
T ss_dssp             ESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGS-CTTCEEEEEEEETTS
T ss_pred             EEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHc-CCCCeEEEEEEECCC
Confidence            99988776321110        011123578888776 899999999999864

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.85  E-value=4.4e-20  Score=135.80  Aligned_cols=181  Identities=14%  Similarity=0.185  Sum_probs=113.7

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee----eCCcE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTL   76 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l   76 (258)
                      +.+...+..+.+.+|++|+|.|.+.+ +.+.+.|+|..  ......    .............+..|..+.    .+.+|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL   77 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFL----IQHYEKVERDKGFLPSRFSVQQFDDYHSEM   77 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEE----EEEETTEEEEECSCCTTEEEEECTTSCEEE
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEE----EEEcCCccccCcccCCeEEEEeCCCCEEEE
Confidence            46677888899999999999999875 67799999832  111000    000000001111112222222    24579


Q ss_pred             EEeecccCCCceEEEEEEEeC--CcceeeceEEEEEec------CCeecc--CCCcceecCCcEEEEeeeCc-ccCc-eE
Q psy14532         77 LIENVQKDHDRGVYWCTATNK--QGRSSSQNVHISVTG------APFVRP--MGNVSAIAGEPLYLGCPVAG-YPIE-SI  144 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~-~i  144 (258)
                      .|.++ +.+|+|.|+|.+.+.  ..........|.|..      +|.+..  +....+..|+.+.|.|.+.+ .|.+ .+
T Consensus        78 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  156 (240)
T 3q5y_A           78 NMSAL-ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVEL  156 (240)
T ss_dssp             EECSC-CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EECcC-ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEE
Confidence            99999 999999999999832  222222455677763      232221  23334556899999999988 5655 79


Q ss_pred             EEEeCCcccCCCcce----EEecCC------eEEEEecccCCC-CcEEEEEEEeCCC
Q psy14532        145 TWQKGVQQLPLNRRQ----KVFPNG------TLLIENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                      .|++++..+......    ....++      .|.|..... +| +|.|+|.|.|...
T Consensus       157 ~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          157 SWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFW-HNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHH-SCTTCEEEEEEEECCB
T ss_pred             EEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHh-ccCCCEEEEEEEcCCC
Confidence            999999887543221    112233      377777776 66 7799999998754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.85  E-value=4.2e-21  Score=142.44  Aligned_cols=162  Identities=17%  Similarity=0.252  Sum_probs=92.3

Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCe-eccCCCcceecCCcEEEEeeeCccc-----CceEEEEeCC--ccc-
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF-VRPMGNVSAIAGEPLYLGCPVAGYP-----IESITWQKGV--QQL-  153 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~i~W~~~~--~~~-  153 (258)
                      +..|+|.|+|.+.   +... ..+.+.+...+. ...+....+.+|+.++|.|.+.+.+     .+.+.|++++  ..+ 
T Consensus        12 ~~~dsg~Y~C~a~---g~~~-~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~   87 (254)
T 2c1o_A           12 RPGTSVKLSCKAS---GYSF-TNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPK   87 (254)
T ss_dssp             ------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCE
T ss_pred             cCCccEEEEEcCc---hhhh-hhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCce
Confidence            7889999999998   3222 223333333333 3335667889999999999998877     3899999843  221 


Q ss_pred             -----------CCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec---CCccccCCCCCcc
Q psy14532        154 -----------PLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDL  216 (258)
Q Consensus       154 -----------~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~  216 (258)
                                 ....++.+...   ..|.|.++.. +|+|.|+|.+.+..+........|.|..   +|.+...+.....
T Consensus        88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~  166 (254)
T 2c1o_A           88 RLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEA-EDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ  166 (254)
T ss_dssp             EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH
T ss_pred             EEEEeccccCCCccceEEEecCCCEEEEEECcCCc-ccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh
Confidence                       11133333322   2799999998 9999999999987543233344566653   4544443333334


Q ss_pred             CCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        217 HSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       217 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      ..|+.++|.|.+.+.+|+ +.|.|+++|+.+..+
T Consensus       167 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  200 (254)
T 2c1o_A          167 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  200 (254)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTT
T ss_pred             ccCCcEEEEEEEecccCCCcEEEEEECCCcccCc
Confidence            468899999999544555 579999999988765

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.85  E-value=2e-20  Score=134.47  Aligned_cols=175  Identities=12%  Similarity=0.179  Sum_probs=109.8

Q ss_pred             Ccc-eeeceeee-ecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE
Q psy14532          3 PQL-IYKFIQQT-LQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL   76 (258)
Q Consensus         3 p~~-~~~~~~~~-~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   76 (258)
                      |.+ +..|.... +.+|++++|.|.+.+.+    ...|.|+|++..+......    ..      ..+.. ......++|
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~----~~------~~~~~-~~~~~~~~L   70 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK----PR------EEQFN-STFRSVSEL   70 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE----CC------CEETT-TEEEEEEEE
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC----CC------cCcCC-CcEEEEEEE
Confidence            444 44555444 89999999999998874    2489999998765432100    00      00000 011223579


Q ss_pred             EEeecccCCCceEEEEEEEeCCccee-eceEEE--EEecCCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceEEEEeCC
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSS-SQNVHI--SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESITWQKGV  150 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l--~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~  150 (258)
                      .|.++ +.+|+|.|+|.+.+..+... ...+.+  .+..+|.+.. ........|+.+.|.|.+.|. |. +.+.|++++
T Consensus        71 ~I~~~-~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  149 (207)
T 2vol_A           71 PIMHQ-DWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNG  149 (207)
T ss_dssp             ECCHH-HHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EEehh-HcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence            99999 99999999999999876432 123332  3334444332 222223358999999999884 54 489999999


Q ss_pred             cccCCCcc--eEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        151 QQLPLNRR--QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       151 ~~~~~~~~--~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..+.....  .....+++      |.|..... +|.|.|+|.|.|...
T Consensus       150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW-EAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EECSCEEECCCEECTTSCEEEEEEEEEEHHHH-SSCCEEEEEEECTTS
T ss_pred             EeccCcccCCceECCCCCEEEEEEEEECHHHc-CCCCEEEEEEECCCC
Confidence            87653321  12234444      34444443 689999999999754

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=1e-20  Score=138.66  Aligned_cols=177  Identities=15%  Similarity=0.210  Sum_probs=110.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecC-CC-eEEEeeCC--EeCcCCccccceecccceeeccccccceeee---eCCcE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNP-TP-HISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTL   76 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~-~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l   76 (258)
                      .+.. +..+.+.+|++++|.|.+.+.+ .+ .+.|+|++  ......      .... ......+..+....   .+.+|
T Consensus        22 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~------~~~~-~~~~~~~~~r~~~~~~~~~~~L   93 (234)
T 2j6e_L           22 VLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLL------IYRN-NQRPSGVPDRFSGSKSGTSASL   93 (234)
T ss_dssp             CCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEE------EBTT-TBCCSSSCTTEEEEEETTEEEE
T ss_pred             EEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEE------EECc-cccCCCccccEEEEecCCeEEE
Confidence            3444 7778899999999999998753 34 79999863  211000      0000 00000111111111   23479


Q ss_pred             EEeecccCCCceEEEEEEEeCCcc--eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESITWQ  147 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i~W~  147 (258)
                      .|.++ +.+|+|.|+|.+.+..+.  .......|.|..    +|.+.. ........|+.+.|.|.+.+. |+ +.+.|+
T Consensus        94 ~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  172 (234)
T 2j6e_L           94 AISGL-RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWK  172 (234)
T ss_dssp             EEESC-CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEE
T ss_pred             EECCC-CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEE
Confidence            99999 999999999999988762  222344556632    232222 222233468899999999885 43 489999


Q ss_pred             eCCcccCCCcce---EE------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        148 KGVQQLPLNRRQ---KV------FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       148 ~~~~~~~~~~~~---~~------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +++..+......   ..      ...+.|.|.++.. +|.|.|+|.|.|...
T Consensus       173 k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~  223 (234)
T 2j6e_L          173 ADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGS  223 (234)
T ss_dssp             ETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGT-TTSCCEEEEEEBTTB
T ss_pred             ECCEECCCCccccCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEeCCC
Confidence            999877543211   00      1123577888876 899999999999764

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.84  E-value=2.6e-20  Score=134.23  Aligned_cols=177  Identities=19%  Similarity=0.292  Sum_probs=109.7

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +.....-.  .... .........+..|..+..     +.+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~--~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~L~   81 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMG--YVSY-SGSTYYNPSLKSRISITRDTSKNQYYLD   81 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEE--EECT-TSCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEE--EEcC-CCCeEECcccCceEEEEecCCCCEEEEE
Confidence            346778899999999999998764  478999985  22111000  0000 000000111222322221     23799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEEEeCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKGV  150 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~~  150 (258)
                      |.++ +.+|+|.|+|.+.+..  .......|.|..    +|.+.. .....+..|+.+.|.|.+.+. |.+ .+.|++++
T Consensus        82 I~~v-~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  158 (210)
T 3d9a_H           82 LNSV-TTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  158 (210)
T ss_dssp             ECSC-CGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             ECCC-CcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCC
Confidence            9999 9999999999998863  111345667753    232221 223446789999999999886 877 99999988


Q ss_pred             cccCCCcc--e----EEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        151 QQLPLNRR--Q----KVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       151 ~~~~~~~~--~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ..+.....  .    .....+.|.|.++.. ++ |.|+|.|.|..+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~~  203 (210)
T 3d9a_H          159 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPASS  203 (210)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEEEGGGT-TT-SCCEEEEEEGGGT
T ss_pred             cccceEEcCCccCCCcEEEEEEEEEcHHHc-CC-CcEEEEEEeCCCC
Confidence            75421111  1    111223578887775 66 9999999998653

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.84  E-value=9.9e-20  Score=129.25  Aligned_cols=153  Identities=16%  Similarity=0.209  Sum_probs=107.2

Q ss_pred             eeecCCCceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      +.+.+|++++|.|.+ +.|.+  .|.|++.+..+.      ...               .......|.|.++ +.+|+|.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~------~~~---------------~~~~~~~L~I~~v-~~~d~G~   73 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG------AVQ---------------SDTGRSVLTVRNA-SLSAAGT   73 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC------CEE---------------EESSEEEEEECSC-CGGGCEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC------cEE---------------ecCCccEEEECcc-CcccCce
Confidence            589999999999999 77777  999998543220      000               0112457999999 9999999


Q ss_pred             EEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcc-cC----ceEEEEeCCcccCCCcceE--E-
Q psy14532         90 YWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY-PI----ESITWQKGVQQLPLNRRQK--V-  161 (258)
Q Consensus        90 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~----~~i~W~~~~~~~~~~~~~~--~-  161 (258)
                      |.|.+.+..+... ..+.|.|+.+|............|+.+ |.|.+.+. |.    ++|.|++++..+.......  . 
T Consensus        74 Y~C~a~n~~~~~~-~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~  151 (210)
T 1gsm_A           74 RVCVGSCGGRTFQ-HTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQ  151 (210)
T ss_dssp             EEEEEEETTEEEE-EEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEE
T ss_pred             EEEEEEeCCCceE-EEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccccccccccee
Confidence            9999999877655 889999998875433212356678888 99999874 63    4899999998885432101  1 


Q ss_pred             --------ecCCeEEE------EecccCCCCcEEEEEEEeCCC
Q psy14532        162 --------FPNGTLLI------ENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       162 --------~~~~~l~i------~~~~~~~~~g~y~C~~~~~~~  190 (258)
                              ....++.+      ... .+++.+.|+|+|.+...
T Consensus       152 ~~~~~~~~~~~~~~~vts~~~~~~~-~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          152 EEEEEPQGDEDVLFRVTERWRLPPL-GTPVPPALYCQATMRLP  193 (210)
T ss_dssp             ECTTCCSSCCCCCEEEEEEEECCCC-CSSCCSEEEEEEEEEET
T ss_pred             cccccccCCcceEEEEEEEEeecCC-cccCCceEEEEEEeeCC
Confidence                    01222222      233 34777899999998763

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.84  E-value=8e-20  Score=134.80  Aligned_cols=182  Identities=16%  Similarity=0.181  Sum_probs=113.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccc-cceeee----eCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLN-RRQKVF----PNG   74 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~   74 (258)
                      .+.+...+..+.+.+|++|+|.| ..+.+.+.+.|+|.  +......   .... .........+. .|..+.    .+.
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~---~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~   76 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFL---VNFY-NGKVMEKSKLFKDQFSVERPDGSYF   76 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEE---EEEE-TTEEEEECTTCCTTEEEECCTTSCE
T ss_pred             CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEE---EEEC-CCceeccCCCccCCEEEEeccCceE
Confidence            35677888889999999999999 66667889999982  1111000   0000 00000001111 122221    234


Q ss_pred             cEEEeecccCCCceEEEEEEEeCC---cceeeceEEEEEec------CCeec--cCCCcceecCCcEEEEeeeCc-ccCc
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQ---GRSSSQNVHISVTG------APFVR--PMGNVSAIAGEPLYLGCPVAG-YPIE  142 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~~~~~--~~~~~~~~~g~~~~l~C~~~~-~~~~  142 (258)
                      +|.|.++ +.+|+|.|+|.+.+..   .........|.|..      +|.+.  .+....+..|+.+.|.|.+.+ .|.+
T Consensus        77 sL~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~  155 (245)
T 4ei6_B           77 TLKIQPT-ALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (245)
T ss_dssp             EEEECSC-CGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEECCC-CHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCC
Confidence            7999999 9999999999998632   22222455677763      33222  123334556999999999988 4444


Q ss_pred             -eEEEEeCCcccCCCcceEEe--------cCC------eEEEEecccCCC-CcEEEEEEEeCCC
Q psy14532        143 -SITWQKGVQQLPLNRRQKVF--------PNG------TLLIENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       143 -~i~W~~~~~~~~~~~~~~~~--------~~~------~l~i~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                       .+.|++++..+.........        .++      .|.|..... +| +|.|+|.|.|...
T Consensus       156 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          156 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH-SCTTCEEEEEEEECCB
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh-ccCCCeEEEEEEECCC
Confidence             89999999877643221110        122      367777766 66 8999999999753

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.84  E-value=5.2e-20  Score=134.06  Aligned_cols=179  Identities=16%  Similarity=0.254  Sum_probs=109.7

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  ..+..-.  .....+........+..|..+..     +.+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVA--SISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQ   82 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE--EECGGGCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEE--EEccCCCccccCcccCCceEEEecCCCCEEEEE
Confidence            345667899999999999998765  6789999853  2110000  00000000000111222322222     35799


Q ss_pred             EeecccCCCceEEEEEEEeCCc-----c--eeeceEEEEEecC----Ceecc-CCCcceecCCcEEEEeeeCcc-cCc-e
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG-----R--SSSQNVHISVTGA----PFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-S  143 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~----~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~  143 (258)
                      |.++ +.+|+|.|.|.+.+..+     .  .....+.|.|...    |.+.. .+...+..|+.+.|.|.+.+. |.+ .
T Consensus        83 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  161 (225)
T 1op3_H           83 MHKM-RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  161 (225)
T ss_dssp             ECSC-CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCE
T ss_pred             ECCC-ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeE
Confidence            9999 99999999999998754     1  1224567777652    32221 222235679999999999875 766 9


Q ss_pred             EEEEeCCcccCCCc-ceEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        144 ITWQKGVQQLPLNR-RQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       144 i~W~~~~~~~~~~~-~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|++++..+.... ......+      +.|.|.++.. +| |.|+|.|.|...
T Consensus       162 v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          162 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  213 (225)
T ss_dssp             EECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGT-TC-CCCCEEEEEGGG
T ss_pred             EEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhc-CC-CcEEEEEEcCCC
Confidence            99999886532111 0011122      2478887775 67 999999999643

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=5.9e-20  Score=138.77  Aligned_cols=167  Identities=16%  Similarity=0.150  Sum_probs=114.6

Q ss_pred             eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      +.+.+|+++.|.|.+. .|.+.+.|++.+......   ...                   ..... +  + ...|+|.|+
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~---~~~-------------------~~~~~-~--~-~~~d~G~Y~  157 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP---VPY-------------------DHQRG-F--S-GIFEDRSYI  157 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC---CCE-------------------ETTTE-E--E-ECCCSSEEE
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc---eee-------------------cCCcC-e--e-eeccCcEEE
Confidence            5688999999999998 677889999864211111   000                   00011 1  1 356999999


Q ss_pred             EEEEeCCcceeeceEEEEEec--CCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEE-----
Q psy14532         92 CTATNKQGRSSSQNVHISVTG--APFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKV-----  161 (258)
Q Consensus        92 C~~~~~~~~~~~~~~~l~v~~--~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~-----  161 (258)
                      |.+.+..+...+..+.|.|..  ++.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++++.......  ....     
T Consensus       158 C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~  237 (289)
T 3mjg_X          158 CKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP  237 (289)
T ss_dssp             EEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTT
T ss_pred             EEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcc
Confidence            999987766555666777765  33222 2344668899999999999999999999998765433211  1111     


Q ss_pred             -ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc
Q psy14532        162 -FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI  207 (258)
Q Consensus       162 -~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  207 (258)
                       ...+.|.|.++.. +|+|.|+|.|.|..| .......|.|...+..
T Consensus       238 ~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G-~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          238 YHIRSILHIPSAEL-EDSGTYTCNVTESVN-DHQDEKAINITVVESG  282 (289)
T ss_dssp             TEEEEEEEESSCCS-SCCEEEEEEEEETTT-TEEEEEEEEEEEEC--
T ss_pred             eEEEEEEEEcccCh-hhCcEEEEEeecCCC-CceeEEEEEEEEEecC
Confidence             1235799999997 999999999999998 4567777888766543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.83  E-value=6.8e-20  Score=133.00  Aligned_cols=177  Identities=21%  Similarity=0.362  Sum_probs=110.2

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--Ee---CcCCccccceeccc-ceeeccccccceeeee-----C
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YP---LAGDRHENKNRIGE-ARVQQLPLNRRQKVFP-----N   73 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~   73 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|++  ..   +.......    +. .......+..|..+..     +
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~R~~~~~~~~~~~   80 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKS----NNYATHYAESVKGRFTISRDDSKSS   80 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGG----GTTCEEECGGGTTTEEEEEEGGGTE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCC----CccccccCcccCCcEEEEEeCCCCe
Confidence            446778899999999999998765  6789999853  11   10000000    00 0000111222322221     2


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcc--eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eE
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SI  144 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i  144 (258)
                      .+|.|.++ +.+|+|.|.|.+.+..+.  .......|.|..    +|.+.. .....+.+|+.+.|.|.+.+. |.+ .+
T Consensus        81 ~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  159 (220)
T 1pz5_B           81 VYLQMNNL-RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV  159 (220)
T ss_dssp             EEEEECSC-CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEccC-CHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence            37999999 999999999999987532  111445677763    232222 223345689999999999886 888 99


Q ss_pred             EEEeCCcccC---CCcc---eEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        145 TWQKGVQQLP---LNRR---QKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       145 ~W~~~~~~~~---~~~~---~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .|++++....   ....   ......+.|.|.++.. ++ |.|+|.|.|..+
T Consensus       160 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~  209 (220)
T 1pz5_B          160 KWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTW-PS-QTVICNVAHPAS  209 (220)
T ss_dssp             EEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGT-TT-SCCEEEEEEGGG
T ss_pred             EEecCCcccceEEcCCcccCCeEEEEEEEEEcchhc-CC-ceEEEEEEECCc
Confidence            9999876411   0000   1112234577877765 56 999999999876

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.83  E-value=6.7e-20  Score=129.00  Aligned_cols=129  Identities=22%  Similarity=0.354  Sum_probs=108.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec-----CCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-----NGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........     .+.|.|.++.. +|+|.|+|.+.+..+...
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~   87 (182)
T 1rhf_A            9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEI   87 (182)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCG-GGCEEEEEEESSCTTCEE
T ss_pred             CcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCc-ccCeEEEEEEEcCCCcEE
Confidence            445678899999999999988889999999998887665444322     25799999997 999999999999866556


Q ss_pred             cceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecccc
Q psy14532        194 SQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       194 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      +..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+ .+.|+++|..+...
T Consensus        88 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~  143 (182)
T 1rhf_A           88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGP  143 (182)
T ss_dssp             CCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCS
T ss_pred             EEEEEEEEecCCeEEecCcceEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCC
Confidence            67889999999988777767788999999999999 588888 99999999998654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.83  E-value=2.4e-19  Score=134.77  Aligned_cols=184  Identities=14%  Similarity=0.158  Sum_probs=112.2

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeee----eCCc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVF----PNGT   75 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~   75 (258)
                      +.+...+..+.+.+|++|+|.|.+.+.+.+.+.|+|.+  .....-   ..... +........+..|..+.    .+.+
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s  101 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLM---ATSNEGSKATYEQGVEKDKFLINHASLTLST  101 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEE---EEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEE---EEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence            55677788899999999999999987777899999863  111000   00000 00000000112222222    2347


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc-----ceeeceEEEEEec------CCeecc--CCCcceecCCcEEEEeeeCcc-cC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG-----RSSSQNVHISVTG------APFVRP--MGNVSAIAGEPLYLGCPVAGY-PI  141 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~C~~~~~-~~  141 (258)
                      |.|.++ +.+|+|.|+|.+.+..+     ........|.|..      +|.+..  +....+..|+.+.|.|.+.+. |.
T Consensus       102 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~  180 (279)
T 2wbj_D          102 LTVTSA-HPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  180 (279)
T ss_dssp             EEESSC-CGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSS
T ss_pred             EEEccC-CccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCC
Confidence            999999 99999999999998421     1112345677764      232221  222334478999999999886 53


Q ss_pred             -ceEEEEeCCcccCCCcceE------E--ecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        142 -ESITWQKGVQQLPLNRRQK------V--FPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       142 -~~i~W~~~~~~~~~~~~~~------~--~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                       +.+.|++++..+.......      .  ..+++      |.|.+....++.|.|+|.|.|...
T Consensus       181 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~  244 (279)
T 2wbj_D          181 HVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  244 (279)
T ss_dssp             CEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCB
T ss_pred             CcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCC
Confidence             6999999998775432211      0  12333      555555442357789999999754

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.83  E-value=4.4e-19  Score=128.98  Aligned_cols=182  Identities=16%  Similarity=0.266  Sum_probs=109.6

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  .....-.  .....+........+..|..+..     +.+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (223)
T 1dee_B            5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVA--LISYDESNKYYADSVKGRFTISRDNSKNTLYLQ   82 (223)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE--EECTTSCCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEE--EEecCCCccccCcccCCeEEEEecCCCCEEEEE
Confidence            344678899999999999998754  4689999853  1110000  00000000001111223333322     34799


Q ss_pred             EeecccCCCceEEEEEEEeCCc----c-eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG----R-SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SIT  145 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~----~-~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~  145 (258)
                      |.++ +.+|+|.|.|.+.+..+    . .....+.|.|..    +|.+.. .+...+..|+.+.|.|.+.+. |.+ .+.
T Consensus        83 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  161 (223)
T 1dee_B           83 MNSL-RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFS  161 (223)
T ss_dssp             ECSC-CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEE
T ss_pred             ECCC-CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEE
Confidence            9999 99999999999998652    1 122445788863    233221 222335688999999999885 766 999


Q ss_pred             EEe-CCcccCCCc---c----eEEecCCeEEEEeccc-CCCCcEEEEEEEeCCCC
Q psy14532        146 WQK-GVQQLPLNR---R----QKVFPNGTLLIENVQK-DHDRGVYWCTATNKQGR  191 (258)
Q Consensus       146 W~~-~~~~~~~~~---~----~~~~~~~~l~i~~~~~-~~~~g~y~C~~~~~~~~  191 (258)
                      |++ ++..+....   .    -.....+.|.|..... ++|.|.|+|.|.|..+.
T Consensus       162 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          162 WKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             EEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             eEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            999 887764310   0    0111123466654431 15789999999998763

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.83  E-value=1.1e-19  Score=129.45  Aligned_cols=133  Identities=21%  Similarity=0.300  Sum_probs=109.0

Q ss_pred             eccCCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCc--ceEEe--c--------CCeEEEEecccCCCCcEEE
Q psy14532        116 VRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNR--RQKVF--P--------NGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~--~~~~~--~--------~~~l~i~~~~~~~~~g~y~  182 (258)
                      ...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....  +..+.  .        .+.|.|.++.. +|+|.|+
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~   84 (195)
T 2c5d_C            6 VGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQL-SDTGQYQ   84 (195)
T ss_dssp             EECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCS-TTCEEEE
T ss_pred             ccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccc-cCCcEEE
Confidence            3445667889999999999998 88889999999998877653  22221  2        35799999997 9999999


Q ss_pred             EEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccccc
Q psy14532        183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSAM  250 (258)
Q Consensus       183 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~~  250 (258)
                      |.+.+..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|.+ .|.|+++|..+....
T Consensus        85 C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~  152 (195)
T 2c5d_C           85 CLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPLATAP  152 (195)
T ss_dssp             EEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEE-ECSSCCCEEEEEESSCBSSSST
T ss_pred             EEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeEC-CCCCCCCEEEEEECCEeccCCC
Confidence            9999987655566688999998887776667788999999999999 688888 999999999987654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.83  E-value=4.3e-19  Score=128.31  Aligned_cols=173  Identities=20%  Similarity=0.249  Sum_probs=119.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.| ..+.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+..... .++.+.             .....++|.|.++
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~-~~~~~~-------------~~~~~~~L~i~~~   83 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY-SNIKIY-------------NTPSASYLEVTPD   83 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSS-CSEEEE-------------EETTEEEEEECCC
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCC-ccEEEe-------------cCCCeeEEEEecC
Confidence            4666 466778899999999999999999999999999988765421 111111             0012457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeC----cccCc--eEEEEeCCcccCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVA----GYPIE--SITWQKGVQQLPL  155 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~~~~--~i~W~~~~~~~~~  155 (258)
                       ...|+|.|+|.+.|..|... ..+.|.|..+|........ ...+..+.|.|...    +.|..  .+.|.+++.....
T Consensus        84 -~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~  160 (215)
T 3mtr_A           84 -SENDFGNYNCTAVNRIGQES-LEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH  160 (215)
T ss_dssp             -SGGGCEEEEEEEECSSCEEE-EEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE
T ss_pred             -ChhhCeEEEEEEEECCCceE-EEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc
Confidence             99999999999999998776 7788888766543221111 23467788888642    22322  4778877654221


Q ss_pred             CcceEE---ecCCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        156 NRRQKV---FPNGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       156 ~~~~~~---~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ......   .....+.|.++.. .+.|.|+|.|.|..|...
T Consensus       161 ~~~~~~~~~~~~~~l~i~~L~~-~~~y~~~~~A~N~~G~s~  200 (215)
T 3mtr_A          161 SKWYDAKEASMEGIVTIVGLKP-ETTYAVRLAALNGKGLGE  200 (215)
T ss_dssp             EEEEEHHHHHHHTEEEEECCCT-TCEEEEEEEEEESSCBCC
T ss_pred             ccccccccccccccEEECCCCC-CCEEEEEEEEEeCCcccC
Confidence            111111   1126799999997 999999999999988543

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.83  E-value=8.1e-20  Score=135.41  Aligned_cols=179  Identities=19%  Similarity=0.263  Sum_probs=105.9

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.  +...+.|+|..  .......  .....+........+..|..+..     +.+|.
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVA--TINSNGASTYYPDTVKGRFTISRDNAKNTLFLQ   82 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEE--EECTTSSCEECCTTTTTTCEEEEEGGGTEEEEE
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEE--EEecCCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence            45667889999999999999763  35689999842  1100000  00000000011112223333322     23599


Q ss_pred             EeecccCCCceEEEEEEEeCC---cceeeceEEEEEe----cCCeec-cCCCcceecCCcEEEEeeeCc-ccCc-eEEEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQ---GRSSSQNVHISVT----GAPFVR-PMGNVSAIAGEPLYLGCPVAG-YPIE-SITWQ  147 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~----~~~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~  147 (258)
                      |.++ +.+|+|.|.|.+.+..   .........|.|.    .+|.+. ......+..|+.+.|.|.+.+ .|.+ .+.|+
T Consensus        83 I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  161 (253)
T 3liz_H           83 MSSL-KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (253)
T ss_dssp             ECSC-CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEG
T ss_pred             ECCC-ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEE
Confidence            9999 9999999999998753   1122244567776    233333 223334567999999999988 6666 89999


Q ss_pred             eCCcccCCCcc------eEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        148 KGVQQLPLNRR------QKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       148 ~~~~~~~~~~~------~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +++........      -.....+.|.|.+... +| |.|+|.|.|..+
T Consensus       162 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d-g~ytC~v~~~~~  208 (253)
T 3liz_H          162 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPAS  208 (253)
T ss_dssp             GGTBCTTEEECCCEEETTEEEEEEEEEEETTST-TT-SCCEEEEEEGGG
T ss_pred             eCCeecceEeCCccccCCeEEEEEEEEEcHHHC-CC-ceEEEEEEECCC
Confidence            98864321100      1111224678888775 78 999999999865

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.82  E-value=1.8e-19  Score=131.43  Aligned_cols=178  Identities=21%  Similarity=0.313  Sum_probs=108.1

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC----CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCc
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGT   75 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   75 (258)
                      ..+..+.+.+|++|+|.|.+.+.+.    +.+.|+|.  +..+..-   ..............+..|..+..     +.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l---~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWL---AHIYWDDDKRYNPSLESRLTISKDTSRDMVF   81 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEE---EEECTTSCEEECTTTGGGEEEEEETTTTEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEE---EEEecCCceeeCcccCCcEEEEEcCCCCeEE
Confidence            3467788999999999999987654    78999985  2211100   00000000001111222333221     357


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc------c--eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG------R--SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PI  141 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~  141 (258)
                      |.|.++ +.+|+|.|.|.+.+..+      .  .....+.|.|..    +|.+.. .+...+..|+.+.|.|.+.+. |.
T Consensus        82 L~I~~v-~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~  160 (228)
T 3bae_H           82 MKITSV-DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE  160 (228)
T ss_dssp             EEECSC-CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSS
T ss_pred             EEEcCC-CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCC
Confidence            999999 99999999999998654      1  111346777763    233222 222345689999999999885 77


Q ss_pred             c-eEEEEeCCcccCCCcceEE------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        142 E-SITWQKGVQQLPLNRRQKV------FPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       142 ~-~i~W~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      + .+.|++++..+........      ...+.|.|.++.. ++ |.|+|.|.|..+
T Consensus       161 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~-g~YtC~~~n~~~  214 (228)
T 3bae_H          161 PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-ESITCNVAHPAS  214 (228)
T ss_dssp             CCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGGG
T ss_pred             CEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhc-CC-CcEEEEEEECCC
Confidence            7 9999998765421111111      1223577777764 55 999999999865

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.82  E-value=1e-18  Score=128.61  Aligned_cols=182  Identities=15%  Similarity=0.183  Sum_probs=110.2

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceecccceeeccc-cccceeee-----e
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLP-LNRRQKVF-----P   72 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~   72 (258)
                      +.+...+..+.+.+|++|+|.|.+.+.  +...+.|+|..  ..+..-   .....+........ +..|..+.     .
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   78 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFL---VSISYDGTVRKESGIPSGKFEVDRIPETS   78 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEE---EEECSSSCEEECTTCCTTSEEEEEETTTT
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEE---EEEecCCceecCCcccCCeEEEEecCCCc
Confidence            456667888999999999999999875  56789999852  211100   00000000000000 12222222     2


Q ss_pred             CCcEEEeecccCCCceEEEEEEEeCCc------ceeeceEEEEEecC-------Ce--eccCCCcceecCCcEEEEeeeC
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATNKQG------RSSSQNVHISVTGA-------PF--VRPMGNVSAIAGEPLYLGCPVA  137 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~------~~~~~~~~l~v~~~-------~~--~~~~~~~~~~~g~~~~l~C~~~  137 (258)
                      +.+|.|.++ +.+|+|.|.|.+.+...      ........|.|...       |.  +..+....+..|+.+.|.|.+.
T Consensus        79 ~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~  157 (242)
T 1hxm_B           79 TSTLTIHNV-EKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLE  157 (242)
T ss_dssp             EEEEEECSC-CGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEE
T ss_pred             EEEEEECCC-CcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEe
Confidence            457999999 99999999999987631      11224567777652       21  1112223455799999999998


Q ss_pred             cc-cC-ceEEEEeCCc-ccCCCc-ceEEecC------CeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        138 GY-PI-ESITWQKGVQ-QLPLNR-RQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       138 ~~-~~-~~i~W~~~~~-~~~~~~-~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +. |. +.+.|++++. .+.... ......+      ..|.|.+...  + |.|+|.|.|..+.
T Consensus       158 g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~--~-g~y~C~v~n~~~~  218 (242)
T 1hxm_B          158 KFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--D-KEHRCIVRHENNK  218 (242)
T ss_dssp             EESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--G-SCEEEEEEETTSG
T ss_pred             eEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC--C-CEEEEEEEeCCCC
Confidence            85 64 7999999887 453221 0011122      2466655442  4 9999999998763

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.82  E-value=3.7e-19  Score=133.16  Aligned_cols=181  Identities=14%  Similarity=0.200  Sum_probs=111.4

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeecccccc-ceee----eeCCc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNR-RQKV----FPNGT   75 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~   75 (258)
                      +.+...+..+.+.+|++|+|.|.+.+ +.+.+.|+|..  ......   ... ..........+.. |..+    ..+.+
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~---~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~s  102 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFL---INF-QNQEVLQQIDMTEKRFSAECPSNSPCS  102 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEE---EEE-ETTEEEEECHHHHHHEEEECCTTSCEE
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEE---EEE-CCCCceecCCccCCcEEEEeCCCcEEE
Confidence            45667788899999999999999865 66799999832  111000   000 0000000000111 1111    12567


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc---ceeeceEEEEEec------CCeecc--CCCcceecCCcEEEEeeeCc-ccCc-
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTG------APFVRP--MGNVSAIAGEPLYLGCPVAG-YPIE-  142 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~-  142 (258)
                      |.|.++ +.+|+|.|+|.+.+...   ........|.|..      +|.+..  +....+..|+.+.|.|.+.+ .|.+ 
T Consensus       103 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  181 (270)
T 3qib_D          103 LEIQSS-EAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  181 (270)
T ss_dssp             EEESSC-CGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEECCC-CHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCe
Confidence            999999 99999999999986431   1222445677765      232221  22334456899999999988 5656 


Q ss_pred             eEEEEeCCcccCCCcceE--------EecC------CeEEEEecccCCC-CcEEEEEEEeCCC
Q psy14532        143 SITWQKGVQQLPLNRRQK--------VFPN------GTLLIENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       143 ~i~W~~~~~~~~~~~~~~--------~~~~------~~l~i~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                      .+.|++++..+.......        ...+      ..|.|..... +| .|.|+|.+.|...
T Consensus       182 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~~g~YtC~v~~~~l  243 (270)
T 3qib_D          182 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQFYGL  243 (270)
T ss_dssp             EEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHH-HSTTCEEEEEEEECCB
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh-ccCCCeEEEEEEecCC
Confidence            899999998775432211        0012      2356666655 55 9999999999754

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.81  E-value=4.4e-19  Score=146.60  Aligned_cols=172  Identities=23%  Similarity=0.435  Sum_probs=118.0

Q ss_pred             eeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ....+.+|++++|.|.+ .+.+.+.+.|+|++..+....    . ..  ......+..+.....+++|.|.++ +.+|+|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~----~-~~--~~~~~~~~~r~~~~~~~~L~i~~v-~~~D~G  445 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWK----V-LS--PQGGGPWDSVARVLPNGSLFLPAV-GIQDEG  445 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCE----E-CC--SCCSSGGGGTSEECTTSCEEESSC-CGGGCE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEE----e-cc--cCCCCCcCCcEEEcCCceEEEecc-ccccCe
Confidence            45678899999999998 677888999999865322110    0 00  000112334455566789999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEecCC---eeccCCCcceecCCc-EEEEeeeCc-ccCceEEEEeCCcccCCCcc-eEE-
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVTGAP---FVRPMGNVSAIAGEP-LYLGCPVAG-YPIESITWQKGVQQLPLNRR-QKV-  161 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~~~~---~~~~~~~~~~~~g~~-~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~-~~~-  161 (258)
                      .|+|.+.+..+......+.|.|..++   .+...... +..++. +.|.|.+.+ .|.+.++|++++..+..... ..+ 
T Consensus       446 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~  524 (581)
T 3o3u_N          446 IFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVK  524 (581)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEE
T ss_pred             EEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEE
Confidence            99999999888774477888887643   22222223 444544 567999987 58999999999987764322 111 


Q ss_pred             ---e---cC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        162 ---F---PN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       162 ---~---~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                         .   ..      .+|.|.++..+++.|.|+|.+.|...
T Consensus       525 ~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          525 EQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             EEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             eeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence               1   11      24788777754668999999999864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.81  E-value=2.3e-19  Score=131.65  Aligned_cols=176  Identities=11%  Similarity=0.190  Sum_probs=106.5

Q ss_pred             CCcceeeceeee--ecCCCceEEEEEEeec---CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc
Q psy14532          2 HPQLIYKFIQQT--LQPGPPVSLKCIATGN---PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT   75 (258)
Q Consensus         2 ~p~~~~~~~~~~--~~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (258)
                      +|.+...+....  +.+|++++|.|.+.+.   |.+ .|.|+|++..+.........          .+. ........+
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~----------~~~-~~~~~~~s~   83 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPE----------KQS-NSTLRSVSE   83 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCE----------ECT-TSCEEEEEE
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccce----------EcC-CCcEEEEEE
Confidence            355544444444  7899999999999886   665 89999987554322100000          000 011123457


Q ss_pred             EEEeecccCCCceEEEEEEEeCCccee-eceEEE--EEecCCeecc-CCCcceecCCcEEEEeeeCc-ccC-ceEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHI--SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAG-YPI-ESITWQKG  149 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l--~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~-~~i~W~~~  149 (258)
                      |.|.++ +.+|+|.|+|.+.+..+... ...+.+  .+..+|.+.. ........|+.+.|.|.+.| +|. ..|.|+++
T Consensus        84 L~I~~~-~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~  162 (239)
T 1i1c_A           84 LPIVER-DWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMN  162 (239)
T ss_dssp             EECCHH-HHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEEhh-HccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEEC
Confidence            999999 99999999999999876432 122222  2223343322 22222335788999999988 454 48999999


Q ss_pred             CcccCCCcc--eEEecCCeEEE------EecccCCCCcEEEEEEEeCCC
Q psy14532        150 VQQLPLNRR--QKVFPNGTLLI------ENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       150 ~~~~~~~~~--~~~~~~~~l~i------~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..+.....  .....++++.+      ..... ++.|.|+|.|.|...
T Consensus       163 g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~-~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          163 GQPQENYKNTPPTMDTDGSYFLYSKLNVKKETW-QQGNTFTCSVLHEGL  210 (239)
T ss_dssp             TEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTTS
T ss_pred             CEECCCceecCceECCCCCEEEEEEEEEChhhc-CCCCEEEEEEECCCC
Confidence            987753221  12234454333      33332 478999999999753

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.81  E-value=1.1e-19  Score=128.89  Aligned_cols=131  Identities=27%  Similarity=0.477  Sum_probs=107.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC-CcceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..+..+..+ ..|.|.++.. +|+|.|+|.+.+..+...+..
T Consensus        14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~   92 (192)
T 2iep_A           14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESC   92 (192)
T ss_dssp             CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCG-GGCEEEEEEEECSSSCCEEEE
T ss_pred             ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCc-ccCeEEEEEEEcCCCceeEeE
Confidence            4456788999999999999988899999999887654 334444433 4699999997 999999999999877555667


Q ss_pred             EEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        197 VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       197 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      ..|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..+..
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~  146 (192)
T 2iep_A           93 GALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRENSR  146 (192)
T ss_dssp             EEEEEEEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCCSS
T ss_pred             EEEEEEeCCccccCCcceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEccCCCc
Confidence            78888888877766666778899999999999 6888899999999999877654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.81  E-value=4.7e-19  Score=127.31  Aligned_cols=169  Identities=14%  Similarity=0.254  Sum_probs=99.6

Q ss_pred             Ccceeeceeeee--cCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE
Q psy14532          3 PQLIYKFIQQTL--QPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL   76 (258)
Q Consensus         3 p~~~~~~~~~~~--~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   76 (258)
                      |.+...+....+  .+|++++|.|.+.+.+    ...|.|+|++..+.......                 .....++.+
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~-----------------~~~~~~g~~   64 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP-----------------REEQYNSTY   64 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECC-----------------CEECTTSCE
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCC-----------------ceeccCCcE
Confidence            555444444434  7999999999998864    34999999997765331000                 001112333


Q ss_pred             E------EeecccCCCceEEEEEEEeCCccee-eceEEE--EEecCCeecc-CCCcceecCCcEEEEeeeCcc-cC-ceE
Q psy14532         77 L------IENVQKDHDRGVYWCTATNKQGRSS-SQNVHI--SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGY-PI-ESI  144 (258)
Q Consensus        77 ~------i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l--~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~i  144 (258)
                      .      |... ...|+|.|+|.+.+..+... ...+.+  .+..+|.+.. ........|+.+.|.|.+.|. |. +.+
T Consensus        65 ~~~~~l~i~~~-d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v  143 (207)
T 1l6x_A           65 RVVSVLTVLHQ-DWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAV  143 (207)
T ss_dssp             EEEEEEECCHH-HHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEEEEEHH-HccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEE
Confidence            3      3333 34459999999999866432 122221  2233343322 222222346669999999884 54 499


Q ss_pred             EEEeCCcccCCCcc--eEEecCCeEE------EEecccCCCCcEEEEEEEeCCC
Q psy14532        145 TWQKGVQQLPLNRR--QKVFPNGTLL------IENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       145 ~W~~~~~~~~~~~~--~~~~~~~~l~------i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .|++++..+.....  .....++++.      |..... +|.|.|+|.|.|...
T Consensus       144 ~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~-~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          144 EWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTTS
T ss_pred             EEEECCeeccCccccCceECCCCCEEEEEEEEECHHHc-CCCCEEEEEEEcCCc
Confidence            99999987653221  1223455433      333333 578999999999754

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.81  E-value=1.4e-19  Score=132.25  Aligned_cols=172  Identities=15%  Similarity=0.205  Sum_probs=108.7

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeec-CC-C-eEEEeeCCEeC-cCCccccceecccceeeccccccceeeeeCCcE
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGN-PT-P-HISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL   76 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   76 (258)
                      +|.+. ..+....+.+|++++|.|.+.+. |. + .+.|+++|..+ ....  .....        ....  ......+|
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~--~~~~~--------~~~g--~~~~~s~L   79 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDP--MVLQE--------HFNG--TYSASSAV   79 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCC--CEEEE--------CTTS--CEEEEEEE
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccccc--ccceE--------CCCC--cEEEEEEE
Confidence            45653 56666778899999999999885 63 4 99999988766 2210  00000        0000  01123469


Q ss_pred             EEeecccCCCceEEEEEEEeCCcceeeceEEEEEe------cCCeecc-CCCcceecCCcEEEEeeeCcc-c-CceEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT------GAPFVRP-MGNVSAIAGEPLYLGCPVAGY-P-IESITWQ  147 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~-~~~i~W~  147 (258)
                      .|.++ +.+|+|.|+|.+.+..+..   .+.+.|.      .+|.+.. ........++.+.|.|.+.+. | .+.|.|+
T Consensus        80 ~I~~~-~~~D~g~Y~C~~~~~~~~~---~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  155 (231)
T 2w59_A           80 PVSTQ-DWLSGERFTCTVQHEELPL---PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWL  155 (231)
T ss_dssp             ECCHH-HHHTTCCEEEEEECTTCSS---CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             Eecch-hccCCCEEEEEEEcCCCCC---ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEE
Confidence            99999 8899999999999876532   2333342      2333221 111111235679999999885 4 3699999


Q ss_pred             eCCcccCCCcce----EEe--------cC-C------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        148 KGVQQLPLNRRQ----KVF--------PN-G------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       148 ~~~~~~~~~~~~----~~~--------~~-~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +++..+......    ...        .+ +      .|.|..... +|.|.|+|.|.|...
T Consensus       156 k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~-~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          156 RDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKW-NGGTVFACMAVHEAL  216 (231)
T ss_dssp             ETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHH-HTTCCEEEEEECTTS
T ss_pred             ECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHc-CCCCcEEEEEEcCCC
Confidence            999887544311    111        23 3      366666665 789999999999764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.81  E-value=2.7e-19  Score=126.83  Aligned_cols=129  Identities=22%  Similarity=0.304  Sum_probs=104.2

Q ss_pred             CCeeccCCCcceec-CCcEEEEeeeCcccC--ceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        113 APFVRPMGNVSAIA-GEPLYLGCPVAGYPI--ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       113 ~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~--~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +|.+.......+.+ |+.+.|.|.+.+.+.  +.+.|++++..+.......  .++.|.|.++.. +|+|.|+|.+.+. 
T Consensus         3 ~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~L~i~~~~~-~d~G~Y~C~~~n~-   78 (190)
T 2wv3_A            3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--SNMEYRINKPRA-EDSGEYHCVYHFV-   78 (190)
T ss_dssp             CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC--SEEEEEESSCCG-GGCEEEEEEEEET-
T ss_pred             CCcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe--ccEEEEEecCCc-ccCEEEEEEEEeC-
Confidence            34444444555556 999999999988776  7999999998876543322  456799999997 9999999999998 


Q ss_pred             CCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEE--CCEecc
Q psy14532        190 GRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK--NGLPIL  247 (258)
Q Consensus       190 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~l~  247 (258)
                      + ..+..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++  +|..+.
T Consensus        79 ~-~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           79 S-APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             T-EEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEE-ECSSCCEEEEEEEETTEEEE
T ss_pred             C-cccccEEEEEecCCcccccCCcceeeCCCcEEEEEEe-CccCCCceEEEEcCCCceee
Confidence            4 5667888999999987766666678999999999999 689999999999  888774

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.80  E-value=1.8e-18  Score=125.06  Aligned_cols=177  Identities=21%  Similarity=0.345  Sum_probs=105.4

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i   78 (258)
                      .+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  .....-   ..............+..|..+..     +.+|.|
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l---~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWI---AAISSGGSPYYNSALKSRLSINRDTSKSQVFLKM   82 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEE---EEECTTCCEECCTTTGGGEEEEEETTTTEEEEEE
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEE---EEEcCCCCcEECCcccCcEEEEeeCCCceEEEEE
Confidence            46778899999999999998754  4689999853  211000   00000000000111222333221     247999


Q ss_pred             eecccCCCceEEEEEEEeCCcc--eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKG  149 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~  149 (258)
                      .++ +.+|+|.|.|.+.+..+.  .....+.|.|..    +|.+.. .+...+..|+.+.|.|.+.+. |.+ .+.|+++
T Consensus        83 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  161 (215)
T 1c5d_H           83 NSL-QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSG  161 (215)
T ss_dssp             SSC-CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCC-CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccC
Confidence            999 999999999999986421  122346777763    232221 222345689999999999885 777 9999998


Q ss_pred             CcccCCCcceEEecCCeEE----EEecccCCCCcEEEEEEEeCCC
Q psy14532        150 VQQLPLNRRQKVFPNGTLL----IENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~----i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..+...........+.+.    +..... ++ |.|+|.|.|..+
T Consensus       162 g~~~~~~~~~~~~~~g~~~~~s~L~~~~~-~~-g~ytC~v~n~~~  204 (215)
T 1c5d_H          162 ALSSDVHTFPAVLQSGLYTLTSSVTSSTW-PS-QTVTCNVAHPAS  204 (215)
T ss_dssp             TTCCSCCBCCCEEETTEEEEEEEEEESST-TT-SCCEEEEEEGGG
T ss_pred             CccCceEecCcccCCCCEEEEEEEecccC-CC-CeEEEEEEeCCC
Confidence            7654321111111123322    222322 45 999999999865

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.80  E-value=5.9e-19  Score=131.14  Aligned_cols=178  Identities=17%  Similarity=0.284  Sum_probs=108.7

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeeee-----CCc
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVFP-----NGT   75 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~   75 (258)
                      ...+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  ..+..-   ..+.. +........+..|..+..     +.+
T Consensus        10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   86 (261)
T 2xqy_G           10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWI---GRIDPSDNETHYNQDFKDKVTLTVDKSSSTVY   86 (261)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTTCCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEE---EEEecCCCceeeCCccCCcEEEEecCCCCEEE
Confidence            3446778899999999999998765  5789999863  211000   00000 000001111222333222     357


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc-c-eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEE
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG-R-SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITW  146 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~-~-~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W  146 (258)
                      |.|.++ +.+|+|.|.|.+.+..+ . .....+.|.|..    +|.+.. .+...+..|+.+.|.|.+.+. |.+ .+.|
T Consensus        87 L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W  165 (261)
T 2xqy_G           87 IQLSSL-TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  165 (261)
T ss_dssp             EEECSC-CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEcCC-CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEE
Confidence            999999 99999999999998642 1 112445777764    232221 222345679999999999874 766 9999


Q ss_pred             EeCCcccCCCc--ce----EEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        147 QKGVQQLPLNR--RQ----KVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       147 ~~~~~~~~~~~--~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ++++..+....  ..    .....+.|.|.+... +| |.|+|.|.|..
T Consensus       166 ~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~YtC~v~n~~  212 (261)
T 2xqy_G          166 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPA  212 (261)
T ss_dssp             GGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGG
T ss_pred             ecCCCcCceEecCceecCCcEEEEEEEEEecccc-CC-CEEEEEEEECC
Confidence            99887643111  00    111234577877765 67 99999999964

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.80  E-value=2.7e-18  Score=127.23  Aligned_cols=179  Identities=15%  Similarity=0.169  Sum_probs=108.4

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccc-ceeeeeCCc--EEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNR-RQKVFPNGT--LLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--l~i~   79 (258)
                      +...+..+.+.+|++|+|.|.+.+.+.+.+.|+|.  +......    .............+.. |.....+..  |.|.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~   79 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWL----FTLRSPGDKEVKSLPGADYLATRVTDTELRLQ   79 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEE----EEECSTTCEEEEEETTEEEEEECCSSSCCEEE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEE----EEECCCcceecCCccCCcEEEEeCCCCeEEEc
Confidence            45667788999999999999988777889999983  1111000    0000000000111111 222222222  9999


Q ss_pred             ecccCCCceEEEEEEEeCCc-----ceeeceEEEEEec------CCeecc--CCCcceecCCcEEEEeeeCc-ccCc-eE
Q psy14532         80 NVQKDHDRGVYWCTATNKQG-----RSSSQNVHISVTG------APFVRP--MGNVSAIAGEPLYLGCPVAG-YPIE-SI  144 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~-~i  144 (258)
                      ++ +.+|+|.|+|.+.+..+     ........|.|..      +|.+..  +....+..|+.+.|.|.+.+ .|.+ .+
T Consensus        80 ~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v  158 (253)
T 3to4_D           80 VA-NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  158 (253)
T ss_dssp             EE-SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             cC-ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEE
Confidence            99 99999999999986543     1222444666653      222221  12223335689999999988 5666 89


Q ss_pred             EEEeCCcccCCCcceEEe--------cCC------eEEEEecccCCC-CcEEEEEEEeCC
Q psy14532        145 TWQKGVQQLPLNRRQKVF--------PNG------TLLIENVQKDHD-RGVYWCTATNKQ  189 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~~~~--------~~~------~l~i~~~~~~~~-~g~y~C~~~~~~  189 (258)
                      +|++++..+.........        .++      .|.|..... +| +|.|+|.|.|..
T Consensus       159 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          159 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHH-TCTTCEEEEEEEECC
T ss_pred             EEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHh-ccCCCEEEEEEEeCC
Confidence            999998877543221100        223      466666655 55 779999999975

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.80  E-value=7.1e-19  Score=124.69  Aligned_cols=129  Identities=25%  Similarity=0.404  Sum_probs=105.2

Q ss_pred             CCCcceecCCcEEEEeeeCccc-CceEEEEe-CCcccCC-CcceEEe----cCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQK-GVQQLPL-NRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~-~~~~~~~-~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+.. ..+..+.    ..+.|.|.++.. +|+|.|+|.+.+..+.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~   87 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCVVTAEDGT   87 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTTE
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCc-ccCEEEEEEEEcCCCc
Confidence            4566788999999999998876 78999999 7776652 3333332    335799999997 9999999999998754


Q ss_pred             CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        192 SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       192 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      ..+..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+...
T Consensus        88 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~  144 (191)
T 1epf_A           88 QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILK  144 (191)
T ss_dssp             EEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGG
T ss_pred             ceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeecc
Confidence            5667788888888887777767778999999999999 58999999999999998653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.80  E-value=4.8e-19  Score=126.11  Aligned_cols=131  Identities=24%  Similarity=0.444  Sum_probs=105.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+..++   .|.|.++.. +|+|.|+|.+.+..+. ...
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~~~-~~~   91 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ-EDEGVYTCIATNEVGE-VET   91 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSG-GGCEEEEEEEECSSCE-EEE
T ss_pred             CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCc-cCCEEEEEEEECCCCc-eeE
Confidence            45677889999999999988888999999999888766666665555   799999997 9999999999988763 445


Q ss_pred             eEEEEeecCCccccC---CCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccccc
Q psy14532        196 NVHISVTVPPKIAPF---EFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV  252 (258)
Q Consensus       196 ~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~~  252 (258)
                      .+.|.|..+|.+...   +....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..+...
T Consensus        92 ~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~  150 (197)
T 3lcy_A           92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENI  150 (197)
T ss_dssp             EEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSE
T ss_pred             EEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEECCCCCce
Confidence            667777766654432   223456789999999999 58899999999999999776543

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.80  E-value=3.5e-19  Score=113.72  Aligned_cols=96  Identities=26%  Similarity=0.442  Sum_probs=77.5

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|+++.|.|.+.|.|.+.|.|+|++..+...   .++.+..             .....+|.|.+
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~---~~~~~~~-------------~~~~~~L~I~~   75 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS---ERLSFPA-------------DGAEHGLLLTA   75 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC---SSEECCE-------------ETTEEEEEESS
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce---eeEEEee-------------cCceEEEEEec
Confidence            3789999999999999999999999999999999999999988654   2222210             01124699999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      + +.+|+|.|+|.+.|..|... ..+.|.|..+|
T Consensus        76 v-~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~pP  107 (107)
T 3knb_B           76 A-LPTDAGVYVCRARNAAGEAY-AAAAVTVLEPP  107 (107)
T ss_dssp             C-CGGGCEEEEEEEEETTEEEE-EEEEEEEEC--
T ss_pred             C-ChhhCEEEEEEEEECCCEEE-EEEEEEEEcCC
Confidence            9 99999999999999998777 77888887654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.80  E-value=3.3e-18  Score=125.07  Aligned_cols=180  Identities=17%  Similarity=0.294  Sum_probs=103.3

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCcEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  ...+.|||..  .....-   ..............+..|..+..     +.+|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l---~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWI---GEINHSGSTNYNPSLKSRVTISVDTSKNQFSLK   81 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEE---EEECTTCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEE---EEEecCCceeeCCccCCeEEEEEeCCCCEEEEE
Confidence            345668899999999999998754  5689999852  211000   00000000001111223333322     23799


Q ss_pred             EeecccCCCceEEEEEEEeCC--cc---eeeceEEEEEecC----Ceecc-CCCcceecC-CcEEEEeeeCcc-cCc-eE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQ--GR---SSSQNVHISVTGA----PFVRP-MGNVSAIAG-EPLYLGCPVAGY-PIE-SI  144 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~--~~---~~~~~~~l~v~~~----~~~~~-~~~~~~~~g-~~~~l~C~~~~~-~~~-~i  144 (258)
                      |.++ +.+|+|.|.|.+....  +.   .......|.|...    |.+.. .+...+..| +.+.|.|.+.+. |.+ .+
T Consensus        82 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v  160 (232)
T 1dn0_B           82 LSSV-TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITF  160 (232)
T ss_dssp             ECSC-CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEE
T ss_pred             ECCC-CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEE
Confidence            9999 9999999999998421  11   1224457888652    22221 112234467 899999999875 766 99


Q ss_pred             EEEe-CCcccCCCc---ce----EEecCCeEEEEecccC--CCCcEEEEEEEeCCCC
Q psy14532        145 TWQK-GVQQLPLNR---RQ----KVFPNGTLLIENVQKD--HDRGVYWCTATNKQGR  191 (258)
Q Consensus       145 ~W~~-~~~~~~~~~---~~----~~~~~~~l~i~~~~~~--~~~g~y~C~~~~~~~~  191 (258)
                      +|++ ++..+....   ..    .....+.|.|.+.. .  +|.|.|+|.|.|..+.
T Consensus       161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~~~d~g~ytC~v~n~~~~  216 (232)
T 1dn0_B          161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKD-VMAGTDEHVVCKVQHPNGN  216 (232)
T ss_dssp             EEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTC-C---CCCEEEEEEECTTCC
T ss_pred             EEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHH-hcccCCCeEEEEEEeCCCC
Confidence            9999 887654300   00    11112345665443 2  4689999999998763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.80  E-value=8.1e-19  Score=126.56  Aligned_cols=128  Identities=23%  Similarity=0.394  Sum_probs=98.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe----cCCeEEEEecc-cCCCCcEEEEEEEeCCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----PNGTLLIENVQ-KDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~----~~~~l~i~~~~-~~~~~g~y~C~~~~~~~~~~  193 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.........    ....|.|.++. . +|+|.|+|.+.|..+. .
T Consensus        13 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-~d~G~Y~C~a~n~~g~-~   90 (212)
T 2yd6_A           13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTP-RDEAIYECVASNNVGE-I   90 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTT-TTCEEEEEEEEETTEE-E
T ss_pred             cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCC-CCCeEEEEEEEcCCCc-E
Confidence            45567889999999999999999999999999887654333221    22358999984 6 9999999999998774 4


Q ss_pred             cceEEEEeecC-------CccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        194 SQNVHISVTVP-------PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       194 ~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      +..+.|.|...       |.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+...
T Consensus        91 ~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~l~~~  152 (212)
T 2yd6_A           91 SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTS  152 (212)
T ss_dssp             EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEEC---
T ss_pred             EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEe-cCCCCCeEEEEECCccccCc
Confidence            56677777654       333333445567889999999999 68899999999999999765

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.80  E-value=3.8e-19  Score=125.83  Aligned_cols=133  Identities=23%  Similarity=0.427  Sum_probs=101.0

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC--CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC-Ccc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~  194 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..+.....++.|.|.++.. +|+|.|+|.+.+..+. ...
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~   86 (189)
T 2v5t_A            8 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEIDF   86 (189)
T ss_dssp             CCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCG-GGCEEEEEEEEETTTTEEEE
T ss_pred             cCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCH-hHCcEEEEEEEEcCCCceEE
Confidence            35567789999999999998888899999999877653  3455566778899999997 9999999999988642 233


Q ss_pred             ceEEEEeecCCccccCCC--CCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccccc
Q psy14532        195 QNVHISVTVPPKIAPFEF--QPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV  252 (258)
Q Consensus       195 ~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~~  252 (258)
                      ..+.+.+..+|.+.....  ...+..|+.+.|.|.+ .+.|.+.+.|+++|..+......
T Consensus        87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~  145 (189)
T 2v5t_A           87 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKY  145 (189)
T ss_dssp             EEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE-EEESCCEEEEEETTEECCCSSSE
T ss_pred             EEEEEEecCCCCcccccccccccccCCCcEEEEEEE-ccCCCCeEEEEECCEECcCCCcE
Confidence            556677777776554332  3467889999999999 57888999999999999866543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.80  E-value=1.2e-18  Score=125.59  Aligned_cols=131  Identities=25%  Similarity=0.387  Sum_probs=102.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC-CCcceEEe--cC--CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-LNRRQKVF--PN--GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~-~~~~~~~~--~~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+.  .+  ..|.|.++...+|+|.|+|.+.|..+..
T Consensus        12 ~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~   91 (212)
T 2yd1_A           12 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDA   91 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCE
T ss_pred             CCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCe
Confidence            3556778999999999999998989999999998875 33333332  23  3688888873279999999999988754


Q ss_pred             ccceEEEEeecC-------CccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        193 SSQNVHISVTVP-------PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       193 ~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      .+..+.|.|...       |.+...+....+..|+.+.|.|.+ .+.|.+.|.|+++|..+...
T Consensus        92 ~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~  154 (212)
T 2yd1_A           92 VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMS  154 (212)
T ss_dssp             EEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEE-ECSSCCEEEEEETTEECCTT
T ss_pred             EEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEe-ccCCCCeEEEEECCeEcccC
Confidence            667788888765       344444445567889999999999 68899999999999998764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.79  E-value=2.5e-18  Score=126.22  Aligned_cols=179  Identities=15%  Similarity=0.210  Sum_probs=108.7

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee----eCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i   78 (258)
                      +...+..+.+.+|++|+|.|.+. .+.+.+.|+|.+  .....-   .... .........+..|..+.    .+.+|.|
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l---~~~~-~~~~~~~~~~~~R~~~~~~~~~~~~L~I   76 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLI---HYSY-GAGSTEKGDIPDGYKASRPSQEQFSLIL   76 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEE---EEEE-ETTEEEECSCCTTCEEECCSSSEEEEEE
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEE---EEEe-CCCcccCCCccceEEEEecCCCEEEEEE
Confidence            45678889999999999999985 457799999853  111000   0000 00000011112222222    2357999


Q ss_pred             eecccCCCceEEEEEEEeCCc----ceeeceEEEEEec------CCeecc--CCCcceecCCcEEEEeeeCcc-cCc-eE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQG----RSSSQNVHISVTG------APFVRP--MGNVSAIAGEPLYLGCPVAGY-PIE-SI  144 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~C~~~~~-~~~-~i  144 (258)
                      .++ +.+|+|.|.|.+.+..+    ........|.|..      +|.+..  +....+..|+.+.|.|.+.+. |.+ .+
T Consensus        77 ~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v  155 (238)
T 1bec_A           77 ELA-TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVEL  155 (238)
T ss_dssp             SSC-CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEE
T ss_pred             ecC-CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEE
Confidence            999 99999999999998632    1112345677764      233222  233345679999999999885 644 99


Q ss_pred             EEEeCCcccCCCcce----EEecCCeEEE------EecccCCCCcEEEEEEEeCC
Q psy14532        145 TWQKGVQQLPLNRRQ----KVFPNGTLLI------ENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       145 ~W~~~~~~~~~~~~~----~~~~~~~l~i------~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .|++++..+......    ....++++.+      ......++.|.|+|.|.|..
T Consensus       156 ~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          156 SWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             EEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             EEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            999999876543221    1123454433      22222124678999999975

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.79  E-value=8.9e-19  Score=129.75  Aligned_cols=177  Identities=19%  Similarity=0.323  Sum_probs=95.4

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeeee-----CCcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      ..+..+.+.+|++|+|.|.+.+.+  .+.+.|+|..  .....-   ..... +........+..|..+..     +.+|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWV---SAISGSGGSTYYADSVKGRFTISRDNSKNTLYL   81 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEE---EEECSSSCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEE---EEEecCCCceecCcccCCceEEEecCCCCEEEE
Confidence            345567899999999999998764  5689999853  111000   00000 000001111223333322     3479


Q ss_pred             EEeecccCCCceEEEEEEEeCCc----------c--eeeceEEEEEec----CCeecc-CCCcceecCCcEEEEeeeCcc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG----------R--SSSQNVHISVTG----APFVRP-MGNVSAIAGEPLYLGCPVAGY  139 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~  139 (258)
                      .|.++ +.+|+|.|.|.+.+..+          .  .......|.|..    +|.+.. .+...+..|+.++|.|.+.+.
T Consensus        82 ~I~~v-~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~  160 (257)
T 3bn9_D           82 QMSSL-RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  160 (257)
T ss_dssp             EEESC-CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEE
T ss_pred             EECCC-ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeE
Confidence            99999 99999999999998654          1  122445778864    233322 222235678999999999885


Q ss_pred             -cCc-eEEEEeCCcccCCCcc-eEEecCC------eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        140 -PIE-SITWQKGVQQLPLNRR-QKVFPNG------TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       140 -~~~-~i~W~~~~~~~~~~~~-~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                       |.+ .++|++++..+..... .....++      .|.|.++.. +| |.|+|.|.|..
T Consensus       161 ~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~-~~-g~YtC~v~n~~  217 (257)
T 3bn9_D          161 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKP  217 (257)
T ss_dssp             BSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC---------CEEEEEEEGG
T ss_pred             ECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEccccc-CC-CeEEEEEEecC
Confidence             766 9999998876432111 1112233      355555554 56 99999999964

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.79  E-value=9e-19  Score=124.43  Aligned_cols=131  Identities=22%  Similarity=0.452  Sum_probs=101.7

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEE-ec--CCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKV-FP--NGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~-~~--~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+ ..  ...|.|.++.. +|+|.|+|.+.+..+. 
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~~~-   88 (194)
T 2a38_A           11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTK-ANSGRYSLKATNGSGQ-   88 (194)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCG-GGCEEEEEEEEETTEE-
T ss_pred             cCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCc-ccCEEEEEEEEcCCce-
Confidence            3456778899999999999998989999999998776542  2222 12  23799999997 9999999999998763 


Q ss_pred             ccceEEEEee---cCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        193 SSQNVHISVT---VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       193 ~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      ....+.|.|.   .+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..+..
T Consensus        89 ~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~  149 (194)
T 2a38_A           89 ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLD  149 (194)
T ss_dssp             EEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEE-EEESCCEEEEEETTEECCCSSS
T ss_pred             EeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEE-EEecCCeEEEEECCEECCCCCc
Confidence            4455667776   34444444556678899999999999 6888899999999999976654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.79  E-value=2.1e-18  Score=124.91  Aligned_cols=127  Identities=25%  Similarity=0.407  Sum_probs=103.5

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...      ....|.|.++.. +|+|.|+|.+.+..+...+..
T Consensus        23 ~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------~~~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~~   95 (218)
T 3k0w_A           23 VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHV-KDAGFYVCRVNNNFTFEFSQW   95 (218)
T ss_dssp             ECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC------CSSEEEETTCCG-GGCEEEEEEEECTTCCEECCC
T ss_pred             ECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------CCCEEEEccCCh-hhCeEeEEEEEcCCCCceeeE
Confidence            3456678899999999999999899999999998877543      346799999997 999999999999877555677


Q ss_pred             EEEEeecCC---------------ccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        197 VHISVTVPP---------------KIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       197 ~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      +.|.|...+               .+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..+..
T Consensus        96 ~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~~  164 (218)
T 3k0w_A           96 SQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHETK  164 (218)
T ss_dssp             EEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCCS
T ss_pred             EEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCCC
Confidence            788887653               33334445678899999999999 6889999999999999876543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.79  E-value=2.4e-19  Score=137.67  Aligned_cols=169  Identities=15%  Similarity=0.236  Sum_probs=106.2

Q ss_pred             eeceeeeecCCCceEEEEEEeec-CCC---eEEEeeCC-EeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN-PTP---HISWKLDG-YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~-~~~---~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ..+....+.+|++++|.|.+.+. |.+   .|.|+|++ ..+...   .....       .....  .....++|.|.++
T Consensus       118 ~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~---~~~~~-------~~~~g--~~~~~~~L~I~~~  185 (323)
T 2wqr_A          118 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS---TRKEE-------KQRNG--TLTVTSTLPVGTR  185 (323)
T ss_dssp             CCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC---CCEEE-------ECTTS--CEEEEEEEECCHH
T ss_pred             cCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc---cCCCc-------cCCCC--CEEEEEEEEECHH
Confidence            34445567899999999999885 455   89999964 443221   00000       00000  1113457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE----ecCCeecc-CCCcceecCCcEEEEeeeCcc-cCc-eEEEEeCCcccC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV----TGAPFVRP-MGNVSAIAGEPLYLGCPVAGY-PIE-SITWQKGVQQLP  154 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v----~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~-~i~W~~~~~~~~  154 (258)
                       +.+|+|.|+|.+.+...... ....+.+    ..+|.+.. ........|+.+.|.|.+.+. |.+ .+.|++++..+.
T Consensus       186 -~~~D~G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~  263 (323)
T 2wqr_A          186 -DWIEGETYQCRVTHPHLPRA-LMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLP  263 (323)
T ss_dssp             -HHHTTCCEEEEEECTTSSSC-EEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             -HccCCCCEEEEEECCCCCCC-eeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECC
Confidence             99999999999998763322 2222221    12333221 111112239999999999884 433 899999998775


Q ss_pred             CCcce----EEec------CCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        155 LNRRQ----KVFP------NGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       155 ~~~~~----~~~~------~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .....    ....      .+.|.|..+.. +|+|.|+|.|.|...
T Consensus       264 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~  308 (323)
T 2wqr_A          264 DARHSTTQPRKTKGSGFFVFSRLEVTRAEW-EQKDEFICRAVHEAA  308 (323)
T ss_dssp             GGGEEECCCEECSSSSEEEEEEEEEEHHHH-HHCCCEEEEEECTTS
T ss_pred             CCceeecCcccCCCCcEEEEEEEEEChHHc-cCCCEEEEEEEeCCC
Confidence            43211    0111      23588888887 899999999999865

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.79  E-value=5.5e-18  Score=125.46  Aligned_cols=181  Identities=13%  Similarity=0.143  Sum_probs=109.1

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee----eCCcEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLL   77 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~   77 (258)
                      .+...+..+.+.+|++|+|.|.+. .+.+.+.|+|..  .....-    .+...........+..|..+.    .+.+|.
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l----~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~   79 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLI----YYSQIVNDFQKGDIAEGYSVSREKKESFPLT   79 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEE----EEESSTTCCEECSSCTTEEECCSSTTBCCEE
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEE----EEEccCccccCCccCCcEEEEecCCCEEEEE
Confidence            456677888999999999999985 457799999852  110000    000000000000111222221    246899


Q ss_pred             EeecccCCCceEEEEEEEeCC--cceeeceEEEEEec------CCeecc--CCCcceecCCcEEEEeeeCcc-cC-ceEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQ--GRSSSQNVHISVTG------APFVRP--MGNVSAIAGEPLYLGCPVAGY-PI-ESIT  145 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~C~~~~~-~~-~~i~  145 (258)
                      |.++ +.+|+|.|.|.+.+..  .........|.|..      +|.+..  +....+..|+.+.|.|.+.+. |. +.+.
T Consensus        80 I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~  158 (252)
T 1oga_E           80 VTSA-QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  158 (252)
T ss_dssp             ECSC-CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             ECcC-ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEE
Confidence            9999 9999999999999862  11111334566653      233222  222234478999999999885 64 4999


Q ss_pred             EEeCCcccCCCcceE------E--ecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        146 WQKGVQQLPLNRRQK------V--FPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       146 W~~~~~~~~~~~~~~------~--~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |++++..+.......      .  ..+++      |.|.+....++.+.|+|.+.|...
T Consensus       159 W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  217 (252)
T 1oga_E          159 WWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  217 (252)
T ss_dssp             EEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            999988765432211      0  12333      566555442367899999999764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.79  E-value=1.2e-18  Score=124.55  Aligned_cols=126  Identities=21%  Similarity=0.306  Sum_probs=92.9

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ..+.+|+.+.|.|.+.|.|.+.+.|+++...............+.|.|.++.. +|+|.|+|.+.|..+ ..+..+.|.|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~-~~~~~~~l~V   88 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF-GNEHSYLCTATCESR-KLEKGIQVEI   88 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCG-GGCSEEEEEEEETTE-EEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCH-HHCEEEEEEEEECCc-eEeeEEEEEE
Confidence            34558999999999999999999999843221111111112334699999997 999999999999876 3566788899


Q ss_pred             ecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEECCEecccc
Q psy14532        202 TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSA  249 (258)
Q Consensus       202 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~l~~~  249 (258)
                      ..+|..........+.+|+.++|.|.+.++.|.  +.|.|+++|..|...
T Consensus        89 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~  138 (202)
T 1vca_A           89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQ  138 (202)
T ss_dssp             EBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEE
T ss_pred             EeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccc
Confidence            887764433323668899999999999655554  479999999988654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.78  E-value=2.6e-18  Score=123.74  Aligned_cols=130  Identities=23%  Similarity=0.523  Sum_probs=102.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCccc------------CCCcceEEecCCeEEEEecccCCCCcEEEEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL------------PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....+... ....|.|.++.. +|+|.|+|.+.
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~v~~-~D~G~Y~C~~~   85 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTR-KDNGEYTCMVS   85 (212)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCG-GGCEEEEEEEE
T ss_pred             CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe-eceeEEEcccCc-ccCeEEEEEEE
Confidence            45567889999999999998888999999987652            12233333 347899999997 99999999999


Q ss_pred             eCCCC-CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCE-eccccc
Q psy14532        187 NKQGR-SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGL-PILSAM  250 (258)
Q Consensus       187 ~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-~l~~~~  250 (258)
                      +..+. ..+..+.|.|..+|.+...+....+..|+.+.|.|.+..+.|.+.+.|+++|. .+....
T Consensus        86 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~  151 (212)
T 1f97_A           86 EEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA  151 (212)
T ss_dssp             ETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC---
T ss_pred             ccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccc
Confidence            98652 23567788888888877666667788999999999944789999999999999 876543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=4.4e-18  Score=124.25  Aligned_cols=179  Identities=11%  Similarity=0.109  Sum_probs=105.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee-----CCc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGT   75 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   75 (258)
                      +.+.+..+.+.+|++|+|.|.+.+.  +...+.|+|..  .....-   ..............+..|..+..     +.+
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l---~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   80 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFL---LYVLATPTHIFLDKEYKKMEASKNPSASTSI   80 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEE---EEECSSCCCEEEESSSSEEEEEECCTTTEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEE---EEEecCCeeecCcccCCeEEEEEcCCCCEEE
Confidence            4556778889999999999998764  45689999852  111000   00000000000000222222221     237


Q ss_pred             EEEeecccCCCceEEEEEEEeC---CcceeeceEEEEEec---------CC--eeccCCCcceecCCcEEEEeeeCcc-c
Q psy14532         76 LLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTG---------AP--FVRPMGNVSAIAGEPLYLGCPVAGY-P  140 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~---~~~~~~~~~~l~v~~---------~~--~~~~~~~~~~~~g~~~~l~C~~~~~-~  140 (258)
                      |.|.++ +.+|+|.|.|.+.+.   ..........|.|..         ++  .+..+....+..|+.+.|.|.+.+. |
T Consensus        81 L~I~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P  159 (230)
T 1ypz_F           81 LTIYSL-EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFP  159 (230)
T ss_dssp             EEECSC-CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESS
T ss_pred             EEECcC-ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecC
Confidence            999999 999999999999874   111222445777762         12  1111222334568899999999875 7


Q ss_pred             C-ceEEEEe-CCcccCCCcc-eEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        141 I-ESITWQK-GVQQLPLNRR-QKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       141 ~-~~i~W~~-~~~~~~~~~~-~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      . +.++|++ ++..+..... .....++      .|.|.+..  . .|.|+|.+.|...
T Consensus       160 ~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~--~-~~~ytC~v~~~~~  215 (230)
T 1ypz_F          160 DVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERA--M-GKEHRCIVKHENN  215 (230)
T ss_dssp             CCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGG--T-TSCEEEEEECSSC
T ss_pred             CCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhh--C-CCEEEEEEEECCC
Confidence            5 5999999 7766542211 0111222      45665543  2 4999999999865

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.78  E-value=3.2e-19  Score=127.44  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=92.6

Q ss_pred             CcceecCCcEEEEee---eCcccCceEEEEeCCcccCCC-----------------cceEE---ecCCeEEEEecccCCC
Q psy14532        121 NVSAIAGEPLYLGCP---VAGYPIESITWQKGVQQLPLN-----------------RRQKV---FPNGTLLIENVQKDHD  177 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~---~~~~~~~~i~W~~~~~~~~~~-----------------~~~~~---~~~~~l~i~~~~~~~~  177 (258)
                      .+.+..|+.++|.|.   +.+.|.+.|.|+|++......                 ....+   .....|.|.++.. +|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCG-GG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCH-HH
Confidence            356789999999995   456788999999987543210                 01111   1123699999997 99


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEec
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  246 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l  246 (258)
                      +|.|+|.+.|..+ .....+.|.|..+|.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+
T Consensus        81 ~G~Y~C~a~n~~g-~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~-~G~P~P~v~W~~~~~~~  147 (203)
T 4fa8_A           81 DGNYLCRMKLGET-EVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVE  147 (203)
T ss_dssp             CEEEEEEEEETTE-EEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEE-EEESCCEEEECCC----
T ss_pred             CeEEEEEEEcCCC-cEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEc-CCCCCCEEEEEECCeee
Confidence            9999999999877 3456678888888877766667788999999999999 68999999999866544

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.78  E-value=1.4e-18  Score=125.70  Aligned_cols=130  Identities=27%  Similarity=0.544  Sum_probs=100.1

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc---ceEEecCCeE----EEEecccCCCCcEEEEEEEeCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR---RQKVFPNGTL----LIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~---~~~~~~~~~l----~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   ......++.+    .|.++.. +|+|.|+|.+.+..+
T Consensus        15 ~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~~~n~~g   93 (217)
T 2vr9_A           15 HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE-QDGGEYWCVAKNRVG   93 (217)
T ss_dssp             CCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSC-BCCEEEEEEEEETTE
T ss_pred             CCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCc-ccCceEEEEEecCCC
Confidence            3556778899999999999988889999999988776431   1222233443    5667776 999999999999877


Q ss_pred             CCccceEEEEeec-CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        191 RSSSQNVHISVTV-PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       191 ~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      ...+..+.|.|.. +|.+...+....+..|+.+.|.|.+..+.|.+.+.|+++|..+..
T Consensus        94 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~  152 (217)
T 2vr9_A           94 QAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDD  152 (217)
T ss_dssp             EEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECC
T ss_pred             ccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCc
Confidence            5445566677665 455555555667889999999999866889999999999999884

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.78  E-value=1.2e-18  Score=124.14  Aligned_cols=132  Identities=24%  Similarity=0.356  Sum_probs=102.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEE--ecCC--eEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKV--FPNG--TLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~--~~~~--~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+  ..++  .|.|.++.. +|+|.|+|.+.+..+. 
T Consensus        10 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g~-   87 (197)
T 2j8h_A           10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD-DDATVYQVRATNQGGS-   87 (197)
T ss_dssp             CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCG-GGCSEEEEEEEETTEE-
T ss_pred             cCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCH-HhCEEEEEEEEECCCc-
Confidence            355678899999999999999889999999999877643 23332  2233  799999997 9999999999998763 


Q ss_pred             ccceEEEEeecCCccccCC-----CCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccccc
Q psy14532        193 SSQNVHISVTVPPKIAPFE-----FQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV  252 (258)
Q Consensus       193 ~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~~  252 (258)
                      .+..+.|.|..+|.+....     ....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..+..+
T Consensus        88 ~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~  151 (197)
T 2j8h_A           88 VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHY  151 (197)
T ss_dssp             EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEECSSSSC
T ss_pred             eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEeecCCCE
Confidence            4667778887766543322     23457789999999999 58899999999999998765543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=123.34  Aligned_cols=125  Identities=11%  Similarity=0.162  Sum_probs=93.2

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCC-----eEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNG-----TLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~-----~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ....+.+|+.+.|.|.+.+ .|.+.+.|++++..+..+.++.+..+.     .|.|.++.. +|+|.|+|.+.|...   
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~-~D~G~Y~C~a~Ng~a---   85 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD-EDEGTYTFQLQDGKA---   85 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCG-GGCEEEEEEEEETTE---
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCCh-hhCEEEEEEEECCCe---
Confidence            3467889999999999964 789999999999998776666554332     589999997 999999999999322   


Q ss_pred             cceEEEEee---------------------cCCccccCCCCCccCCCCeeeEEEEeccCC-CCceeEEEECCEeccccc
Q psy14532        194 SQNVHISVT---------------------VPPKIAPFEFQPDLHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSAM  250 (258)
Q Consensus       194 ~~~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~l~~~~  250 (258)
                      .....+.+.                     .+|.+.... ...+.+|+.+.|.|.+ .+. |.+.|.|++||+.|..+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v-~g~~P~p~i~W~k~g~~l~~~~  162 (207)
T 3rbs_A           86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISVDE  162 (207)
T ss_dssp             EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEE-ESCCTTCEEEEEETTEEECCCC
T ss_pred             EEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEE-eCCCCCCEEEEEECCEECCCCC
Confidence            222232211                     134332222 3567889999999999 566 899999999999997654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.77  E-value=1.8e-18  Score=124.23  Aligned_cols=130  Identities=22%  Similarity=0.481  Sum_probs=104.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCccc------------CCCcceEEecCCeEEEEecccCCCCcEEEEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL------------PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....+.... ...|.|.++.. +|+|.|+|.+.
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~-~d~G~Y~C~~~   88 (209)
T 1nbq_A           11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTR-EDTGTYTCMVS   88 (209)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCT-TSCSEEEEEEE
T ss_pred             CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCH-HHCcEEEEEEe
Confidence            45567889999999999998888999999987652            122333332 37899999997 99999999999


Q ss_pred             eCCCC-CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        187 NKQGR-SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       187 ~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      +..+. ..+..+.|.|..+|.+........+..|+.+.|.|.+..+.|.+.+.|+++|..+....
T Consensus        89 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~  153 (209)
T 1nbq_A           89 EEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP  153 (209)
T ss_dssp             ETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred             cCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence            97642 23567788888888877666666788999999999975789999999999999887654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.77  E-value=1.9e-18  Score=135.95  Aligned_cols=133  Identities=23%  Similarity=0.429  Sum_probs=106.8

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccCC-----CcceEEe---cCCeEEEEecccCCCCcEEEEE
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLPL-----NRRQKVF---PNGTLLIENVQKDHDRGVYWCT  184 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~~-----~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~  184 (258)
                      .+..+....+.+|+.+.|.|.+.|.|.+.+.|+++  +..+..     ..++.+.   ..+.|.|.++.. +|+|.|+|.
T Consensus         3 ~i~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~   81 (389)
T 2jll_A            3 HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL-SDSGRYDCE   81 (389)
T ss_dssp             EEEECCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCG-GGCEEEEEE
T ss_pred             eEEecCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccCh-hhCEEEEEE
Confidence            33345566788899999999999999999999998  666543     2344443   235799999997 999999999


Q ss_pred             EEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        185 ATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       185 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      |.|..+. .+..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+....
T Consensus        82 a~n~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~  145 (389)
T 2jll_A           82 AASRIGG-HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKN  145 (389)
T ss_dssp             EECSSCE-EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTT
T ss_pred             EEeCCCC-cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCccc
Confidence            9998884 567888999888877655544467889999999999 588899999999999987654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.76  E-value=3e-18  Score=122.04  Aligned_cols=121  Identities=17%  Similarity=0.228  Sum_probs=81.4

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce--EEecCCeEEEEecccCCCCcEEEEEEEeCCCC-CccceEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ--KVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVH  198 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~  198 (258)
                      ..+.+|++++|.|.+.+.+. .+.|++++..+......  .....+.|.|.++.. +|+|.|+|.+.|..+. ..+..+.
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~s~~~~   91 (196)
T 2d3v_A           14 SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTE-HHAGRYRCYYYSPAGWSEPSDPLE   91 (196)
T ss_dssp             SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCG-GGCEEEEEEEEETTEECBCCCCEE
T ss_pred             CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCCh-hHCeEEEEEEeCCCCcCCcCccEE
Confidence            47889999999999987665 99999999876532211  112345799999997 9999999999987653 2356677


Q ss_pred             EEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecc
Q psy14532        199 ISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  247 (258)
Q Consensus       199 l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~  247 (258)
                      |.|..   +|.+...+ ...+.+|+.++|.|.+ .+.| +.|.|+++|..+.
T Consensus        92 l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~  140 (196)
T 2d3v_A           92 LVVTGFYNKPTLSALP-SPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKL  140 (196)
T ss_dssp             EEEECSSCCCEEEC------------CEEEEEE-SSCC-SEEEEEEC---CC
T ss_pred             EEecCCCCCCeEEccC-CccccCCCcEEEEEEc-CCCC-CEEEEEccCCccc
Confidence            88776   34443333 2468899999999999 5777 8999999998875

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.76  E-value=9.6e-18  Score=122.63  Aligned_cols=180  Identities=17%  Similarity=0.241  Sum_probs=100.1

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeE--EEeeCCEeCcCCcccccee-ccc--ceeeccccccceeeee-----CC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHI--SWKLDGYPLAGDRHENKNR-IGE--ARVQQLPLNRRQKVFP-----NG   74 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v--~W~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~-----~~   74 (258)
                      ..+..+.+.+|++|+|.|.+.+.  ....+  .|||........ ....+. .+.  .......+..|..+..     +.
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   83 (232)
T 3qhz_H            5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALE-WLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQV   83 (232)
T ss_dssp             EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCE-EEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEE
T ss_pred             EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcE-EEEEEECCCCccccccCccccCceEEEeccCCCEE
Confidence            34556789999999999998753  22344  999842100000 000000 000  0011112223333332     23


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCc-------ceeeceEEEEEec----CCeec-cCCCcceecCCcEEEEeeeCcccC-
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQG-------RSSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYLGCPVAGYPI-  141 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~-  141 (258)
                      +|.|.++ +.+|+|.|.|.+.+..+       ........|.|..    .|.+. ......+..|+.+.|.|.+.+.++ 
T Consensus        84 sL~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           84 VLTMTNM-DPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EEEECSC-CGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             EEEECcC-ChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            6999999 99999999999986521       1122445667752    23333 233344567999999999987443 


Q ss_pred             -ceEEEEeCCcccCCCcce-EEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        142 -ESITWQKGVQQLPLNRRQ-KVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       142 -~~i~W~~~~~~~~~~~~~-~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                       ..+.|++++..+...... ....+      +.|.|.+... .| |.|+|.|.|..+
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~ytC~v~~~~~  217 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  217 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GT-CCCEEEEEEGGG
T ss_pred             CeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhc-CC-CEEEEEEEeCCC
Confidence             368899987643211111 11112      3577777765 77 999999999754

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=8.5e-18  Score=120.39  Aligned_cols=117  Identities=16%  Similarity=0.239  Sum_probs=94.5

Q ss_pred             CCcceecCCcEEEEeeeCcccCce-EEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      ....+.+|+.+.|.|.+.+.|.+. +.|++++..+...       .+.|.|.++.. +|+|.|+|.+.+.   ..+..+.
T Consensus        15 ~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-------~~~L~i~~v~~-~D~G~Y~C~a~n~---~~s~~~~   83 (204)
T 3sgj_C           15 QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------ASSYFIDAATV-DDSGEYRCQTQLS---TLSDPVQ   83 (204)
T ss_dssp             CCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-------SSEEEESSCCG-GGCEEEEEEETTS---BCCCCEE
T ss_pred             CCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-------ccEEEEecccc-cCCEEEEEEeCCC---cccccEE
Confidence            336788999999999999887664 9999998876543       27899999997 9999999999874   3456778


Q ss_pred             EEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        199 ISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       199 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      |.|..+|.+...+ ...+.+|+.++|.|.+..+.|.+.|.|+++|..+..
T Consensus        84 l~V~~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~  132 (204)
T 3sgj_C           84 LEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY  132 (204)
T ss_dssp             EEEECSSEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             EEEecCceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec
Confidence            8888777554444 356778999999999966667789999999998753

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.76  E-value=1.6e-17  Score=117.12  Aligned_cols=124  Identities=18%  Similarity=0.256  Sum_probs=93.3

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC-
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-  191 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~-  191 (258)
                      +|.+...+...+.+|++++|.|.+.+ +.+.+.|++++..       .....+.|.|.++.. +|+|.|+|.+.|..+. 
T Consensus         8 ~P~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-------~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~   78 (184)
T 2gi7_A            8 KPSLQALPSSLVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-------RYQDQAVLFIPAMKR-SLAGRYRCSYQNGSLWS   78 (184)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECST-TCSEEEEEETTTC-------CEESSSEEEESSCCG-GGCEEEEEEEEETTEEB
T ss_pred             CCeEEeCCCccccCCCcEEEEEeCCC-CCCEEEEEECCcc-------ccCcccEEEECcCCh-hhCceEEEEEEcCCCcc
Confidence            34433333347889999999999987 7789999998876       123567899999997 9999999999997652 


Q ss_pred             CccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        192 SSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       192 ~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      ..+..+.|.|..   +|.+...+ ...+.+|+.++|.|.+ .+.| +.+.|+++|..+..
T Consensus        79 ~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~-~~~~-~~~~w~k~g~~~~~  135 (184)
T 2gi7_A           79 LPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQT-RYGF-DQFALYKEGDPAPY  135 (184)
T ss_dssp             CCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEEC-SSCC-CEEEEEECCCCTTS
T ss_pred             CCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEc-CCCC-cEEEEEECCCcCcc
Confidence            345667777744   34444334 4567899999999998 4544 69999999988764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.76  E-value=2.1e-17  Score=121.32  Aligned_cols=178  Identities=15%  Similarity=0.243  Sum_probs=104.2

Q ss_pred             eeceeeeecCCCceEEEEEEeecC----CCeEEEeeCC--EeCcCCcccccee------cccceeeccccccceeeee--
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG--YPLAGDRHENKNR------IGEARVQQLPLNRRQKVFP--   72 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--   72 (258)
                      ..+..+.+.+|++|+|.|.+.+.+    ...+.|||..  .....-   ....      .+........+..|..+..  
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   81 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWV---GSLSHCASYWNRGWTYHNPSLKSRLTLALDT   81 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEE---EEEECCCCTTSSCEEEECTTTGGGEEEEEEG
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEE---EEEecccccccCCceecCccccCCEEEEEEC
Confidence            345678899999999999998754    3489999842  111000   0000      0000111112223333322  


Q ss_pred             ---CCcEEEeecccCCCceEEEEEEEeCCc------------ceeeceEEEEEec----CCeec-cCCCcceecCCcEEE
Q psy14532         73 ---NGTLLIENVQKDHDRGVYWCTATNKQG------------RSSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYL  132 (258)
Q Consensus        73 ---~~~l~i~~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l  132 (258)
                         +.+|.|.++ +.+|+|.|.|.+.+..+            ........|.|..    .|.+. ......+..|+.+.|
T Consensus        82 ~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l  160 (239)
T 3tv3_H           82 PKNLVFLKLNSV-TAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAAL  160 (239)
T ss_dssp             GGTEEEEEECSC-CGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEE
T ss_pred             CCCEEEEEECCC-ChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEE
Confidence               235999999 99999999999986531            1112344566642    23332 233344567999999


Q ss_pred             EeeeCc-ccCc-eEEEEeCCcccCCCcce-EEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        133 GCPVAG-YPIE-SITWQKGVQQLPLNRRQ-KVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       133 ~C~~~~-~~~~-~i~W~~~~~~~~~~~~~-~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .|.+.+ .|.+ .+.|++++..+...... ....+      +.|.|..... +| |.|+|.|.|..+
T Consensus       161 ~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-~~ytC~v~h~~~  225 (239)
T 3tv3_H          161 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  225 (239)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGT-TT-CCCEEEEEEGGG
T ss_pred             EEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhc-CC-CEEEEEEEECCC
Confidence            999987 4534 58999987643221111 11122      2467777665 77 999999999754

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.75  E-value=8.3e-18  Score=106.00  Aligned_cols=95  Identities=24%  Similarity=0.446  Sum_probs=75.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||+|...+.++.+.+|+++.|.|.+.|.|.+.+.|+|++..+..... .++.+.             ......+|.|.++
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~-~~~~~~-------------~~~~~~~L~I~~~   70 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ-GRFHIE-------------NTDDLTTLIIMDV   70 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGG-GTEEEE-------------ECSSEEEEEESSC
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecc-ceeeee-------------cccceEEEEEcCC
Confidence            78898889999999999999999999999999999999998865421 122111             0011246999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                       +.+|+|.|+|.+.|..|... ..+.|.|..
T Consensus        71 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~   99 (100)
T 3knb_A           71 -QKQDGGLYTLSLGNEFGSDS-ATVNIHIRS   99 (100)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             -CccCCEEEEEEEEECCCEEE-EEEEEEEEE
Confidence             99999999999999998776 777887753

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.75  E-value=3.2e-17  Score=119.69  Aligned_cols=176  Identities=17%  Similarity=0.291  Sum_probs=103.7

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      ..+..+.+.+|++|+|.|.+.+.  ....+.|||..  ......   ..... .........+..|..+..+     .+|
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (230)
T 3n9g_H            5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWM---GIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYM   81 (230)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTTCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEE---EEEecCCCceecCcccCCcEEEEecCCCCEEEE
Confidence            34456889999999999998752  34589999842  110000   00000 0000111122233333322     249


Q ss_pred             EEeecccCCCceEEEEEEEeCC-------cceeeceEEEEEec----CCeec-cCCCcceecCCcEEEEeeeCcc-c-Cc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQ-------GRSSSQNVHISVTG----APFVR-PMGNVSAIAGEPLYLGCPVAGY-P-IE  142 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~-------~~~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~~-~-~~  142 (258)
                      .|.++ +.+|+|.|.|.+.+..       .........|.|..    +|.+. ......+..|+.+.|.|.+.+. | ..
T Consensus        82 ~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~  160 (230)
T 3n9g_H           82 ELSSL-RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (230)
T ss_dssp             EECSC-CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCC
T ss_pred             EECCC-ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCE
Confidence            99999 9999999999998753       11122445677752    23222 2333345689999999999874 4 35


Q ss_pred             eEEEEeCCcccCCCcc---eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        143 SITWQKGVQQLPLNRR---QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       143 ~i~W~~~~~~~~~~~~---~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+.|  ++..+.....   .....+      +.|.|..... +| |.|+|.|.|...
T Consensus       161 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-~~ytC~v~h~~~  213 (230)
T 3n9g_H          161 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  213 (230)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTB-TT-BCCEEEEEEGGG
T ss_pred             EEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHc-CC-CeEEEEEEECCC
Confidence            7999  5554432110   111222      2577777775 78 999999999754

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=3.8e-17  Score=117.21  Aligned_cols=174  Identities=17%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeee------CCc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFP------NGT   75 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   75 (258)
                      .+...+..+.+.+|++|+|.|.+.+.. +.+.|+|..  .....-   ..  ...    ......|..+..      +.+
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~---~~--~~~----~~~~~~R~~~~~~~~~~~~~~   72 (207)
T 1ypz_E            3 QVEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISL---FY--LAS----GTKENGRLKSAFDSKERRYST   72 (207)
T ss_dssp             SEEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEE---EE--ESS----EEEEETTEEEEECTTTCSEEE
T ss_pred             ccEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEE---EE--Ecc----CCccCCCEEEEeccCCCCEEE
Confidence            355667888999999999999987653 489999853  111000   00  000    001112222222      357


Q ss_pred             EEEeecccCCCceEEEEEEEeCCc---------c-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcc-cC-ce
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQG---------R-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY-PI-ES  143 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~---------~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~  143 (258)
                      |.|.++ +.+|+|.|.|.+.+..+         . .......|.|.........+.+.+..+ .+.|.|.+.+. |. +.
T Consensus        73 L~I~~v-~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~  150 (207)
T 1ypz_E           73 LHIRDA-QLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVT  150 (207)
T ss_dssp             EEECSC-CGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCE
T ss_pred             EEECCC-CHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeE
Confidence            999999 99999999999987632         1 122345777775322112222333332 47999999874 54 69


Q ss_pred             EEEEeCCcccCCC-cceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        144 ITWQKGVQQLPLN-RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       144 i~W~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|+++ ..+... .......++++.+......++.|.|+|.+.|..+
T Consensus       151 v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          151 ISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             EEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             EEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            999998 655432 2222345677777655433678999999999754

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.75  E-value=8.2e-18  Score=130.21  Aligned_cols=174  Identities=14%  Similarity=0.242  Sum_probs=104.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+...+....+.+|++++|.|.+.+. |. +.+.|++++..+..... ......         .  ........|.|.
T Consensus       120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~-~~~~~~---------~--~~~~~~s~L~i~  187 (344)
T 1za6_B          120 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF-PAVLQS---------S--GLYSLSSVVTVP  187 (344)
T ss_dssp             CCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEEC-CCEECT---------T--SCEEEEEEEEEE
T ss_pred             CCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeEC-CCeECC---------C--CCEEEEEEEEEc
Confidence            3455444444557899999999999986 64 69999999865421100 000000         0  011123468898


Q ss_pred             ecccCCCceEEEEEEEeCCccee-eceEEEE----------------------EecCCeecc-CCCcceecCCcEEEEee
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSS-SQNVHIS----------------------VTGAPFVRP-MGNVSAIAGEPLYLGCP  135 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~----------------------v~~~~~~~~-~~~~~~~~g~~~~l~C~  135 (258)
                      ++ ..+| |.|+|.+.+..+... ...+.+.                      +..+|.+.. ........|+.+.|.|.
T Consensus       188 ~~-~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~  265 (344)
T 1za6_B          188 SS-SLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCL  265 (344)
T ss_dssp             TT-HHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEE
T ss_pred             HH-HcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEE
Confidence            88 7777 999999999876532 1212111                      112333222 12222335667999999


Q ss_pred             eCcc-c-CceEEEEeCCcccCCCcce--EEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        136 VAGY-P-IESITWQKGVQQLPLNRRQ--KVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       136 ~~~~-~-~~~i~W~~~~~~~~~~~~~--~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|. | .+.++|++++..+......  ....+++      |.|..... +|+|.|+|.|.|...
T Consensus       266 ~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~YtC~a~~~~l  329 (344)
T 1za6_B          266 VKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEAL  329 (344)
T ss_dssp             EEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHH-HTTCEEEEEEECTTS
T ss_pred             EeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHc-cCCCeEEEEEEcCCC
Confidence            9885 4 3589999999877543221  1234443      34444443 679999999999754

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.75  E-value=2e-17  Score=121.96  Aligned_cols=179  Identities=17%  Similarity=0.296  Sum_probs=102.4

Q ss_pred             eeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCcccccee-cccceeeccccccceeeee-----CCc
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNR-IGEARVQQLPLNRRQKVFP-----NGT   75 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~   75 (258)
                      +..+..+.+.+|++|+|.|.+.+.  ....+.|||..  .....-   .... .+........+..|.....     +.+
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   79 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWV---AFIKYDGSEKYHADSVWGRLSISRDNSKDTLY   79 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTSSCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEE---EEEecCCCceecCcccCCcEEEEecCCCCEEE
Confidence            456677889999999999999752  34589999842  110000   0000 0000011112223333322     235


Q ss_pred             EEEeecccCCCceEEEEEEEeCC---------------------cceeeceEEEEEec----CCeec-cCCCcceecCCc
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQ---------------------GRSSSQNVHISVTG----APFVR-PMGNVSAIAGEP  129 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~~  129 (258)
                      |.|.++ +.+|+|.|.|.+.+..                     .........|.|..    .|.+. ..+...+..|+.
T Consensus        80 L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~  158 (248)
T 3u2s_H           80 LQMNSL-RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGT  158 (248)
T ss_dssp             EEECSC-CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CE
T ss_pred             EEECCC-CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCc
Confidence            999999 9999999999998642                     11122445677752    22222 123334556899


Q ss_pred             EEEEeeeCc-cc-CceEEEEeCCcccCCCcc-eEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        130 LYLGCPVAG-YP-IESITWQKGVQQLPLNRR-QKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       130 ~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~-~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +.|.|.+.+ .| ...+.|++++........ .....++      .|.|..... ++ |.|+|.|.|...
T Consensus       159 ~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-~~ytC~v~h~~~  226 (248)
T 3u2s_H          159 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  226 (248)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGB-TT-BCCEEEEEEGGG
T ss_pred             EEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhc-CC-CeEEEEEEECCC
Confidence            999999987 45 457999998764321111 1112222      466766665 67 999999999754

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.75  E-value=7e-18  Score=121.49  Aligned_cols=132  Identities=27%  Similarity=0.536  Sum_probs=99.3

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-----ceEEecCCeEEE-----EecccCCCCcEEEEEEEe
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTLLI-----ENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-----~~~~~~~~~l~i-----~~~~~~~~~g~y~C~~~~  187 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....     ......++.+.+     .++.. +|+|.|+|.+.+
T Consensus        15 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~n   93 (212)
T 2v9r_A           15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR-PDEGVYVCVARN   93 (212)
T ss_dssp             CCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCC-CSCEEEEEEEEE
T ss_pred             CCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCc-ccCeEEEEEEEC
Confidence            3456778899999999999988889999999987765332     122334444444     34565 899999999999


Q ss_pred             CCCCCccceEEEEeec-CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        188 KQGRSSSQNVHISVTV-PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       188 ~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      ..+...+..+.|.|.. ++.+...+....+..|+.+.|.|.+..+.|.+.+.|+++|..+....
T Consensus        94 ~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~  157 (212)
T 2v9r_A           94 YLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD  157 (212)
T ss_dssp             TTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS
T ss_pred             CCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc
Confidence            8765445667777765 33444445556788999999999985688899999999999998654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.75  E-value=1.2e-17  Score=121.99  Aligned_cols=132  Identities=17%  Similarity=0.282  Sum_probs=101.5

Q ss_pred             cCCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccC-------------CCcceE----------EecCCeEEEEecc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLP-------------LNRRQK----------VFPNGTLLIENVQ  173 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~-------------~~~~~~----------~~~~~~l~i~~~~  173 (258)
                      .+....+.+|+.+.|.|.+.+.+. +.+.|++++....             ...+..          +..++.|.|.++.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            345677899999999999998874 8999998655422             122333          4555779999999


Q ss_pred             cCCCCcEEEEEEEeCCCCCccceEEEEeecCCcccc---CCCCCccCCCCee-eEEEEeccCCCCceeEEEECCEecccc
Q psy14532        174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP---FEFQPDLHSGDRA-GVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~---~~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      . +|+|.|+|.+.+......+..+.|.|..+|..+.   .+....+..|+.+ .|.|.+..+.|.+.+.|+++|..+...
T Consensus        86 ~-~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~  164 (231)
T 2pet_A           86 V-GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP  164 (231)
T ss_dssp             G-GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCC
T ss_pred             c-ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccc
Confidence            8 9999999999998632456778888887765433   3344557789988 999999668899999999999999776


Q ss_pred             c
Q psy14532        250 M  250 (258)
Q Consensus       250 ~  250 (258)
                      .
T Consensus       165 ~  165 (231)
T 2pet_A          165 V  165 (231)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.74  E-value=1.9e-17  Score=119.77  Aligned_cols=131  Identities=15%  Similarity=0.151  Sum_probs=93.7

Q ss_pred             CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE--EecCC--eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK--VFPNG--TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~--~~~~~--~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      |.+...+...+.+|+.++|.|.+.+ +.+.+.|+|++..+.......  ....+  .|.|.+++. +|+|.|+|.+.+..
T Consensus        10 P~i~~~p~~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~   87 (218)
T 1uct_A           10 PFISAKSSPVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDA-NKAGRYQCQYRIGH   87 (218)
T ss_dssp             CCEEESSCSEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCG-GGCEEEEEEEEETT
T ss_pred             CEEEecCCCccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEccccc-ccCEEEEEEEEcCC
Confidence            3333333356889999999999987 678999999987654222111  12334  899999997 99999999999975


Q ss_pred             C-CCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        190 G-RSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       190 ~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      + ...+..+.|.|..   +|.+...+ ...+.+|+.++|.|.+ .+.|.+.|.|+|+|..+..
T Consensus        88 ~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~  148 (218)
T 1uct_A           88 YRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLP  148 (218)
T ss_dssp             TEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCC
T ss_pred             CceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeC-CCCCCCEEEEEECCCcccc
Confidence            4 2335667777765   34443333 4568899999999976 4667789999999987753

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.74  E-value=1.7e-17  Score=116.03  Aligned_cols=123  Identities=17%  Similarity=0.266  Sum_probs=91.4

Q ss_pred             cceecCCcEEEEeeeCc--ccCceEEEEeCCccc----------CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        122 VSAIAGEPLYLGCPVAG--YPIESITWQKGVQQL----------PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +.+.+|+.+.|.|....  .+.+.|.|++++..+          ....++.+..++.|.|.++.. +|+|.|+|.+.|..
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~-~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-DDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCG-GGCEEEEEEEEETT
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEccccc-ccCEEEEEEEEeCC
Confidence            45678999999995433  456789999988533          234556666788899999998 99999999999988


Q ss_pred             CCC-ccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        190 GRS-SSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       190 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      +.. .+..+.|.|..++..+..     ...+..+.|.|.+ .+.|.+.|.|+++|+.+..+..
T Consensus        85 g~~~~~~~~~l~V~~~~~~p~i-----~~~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~~~~  141 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSKPMI-----YWECSNATLTCEV-LEGTDVELKLYQGKEHLRSLRQ  141 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCCCEE-----EEETTTTEEEEEC-SSCSSCEEEEEETTEEEEEESS
T ss_pred             CCEEEEEEEEEEEeCCCCCCEE-----EecCCcEEEEEEe-cCCCCcEEEEEECCEECCCCCc
Confidence            754 356677777764332111     1224569999999 5778899999999999876543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.74  E-value=1.9e-17  Score=119.37  Aligned_cols=128  Identities=18%  Similarity=0.299  Sum_probs=94.3

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEE---ecCCeEEEEecccCCCCcEEEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKV---FPNGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~---~~~~~l~i~~~~~~~~~g~y~C  183 (258)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++.  +....            ...++.+   ..+..|.|.+++. +|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C   87 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA-GDEADYYC   87 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh-hhCEEEEE
Confidence            67788999999999999888999999983  22111            1123322   2234699999997 99999999


Q ss_pred             EEEeCCC--CCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        184 TATNKQG--RSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       184 ~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      .+.+..+  ......+.|.|.    .+|.+...+....+..|+.++|.|.+.+..|+ +.|.|+++|..+..+
T Consensus        88 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (213)
T 3mj8_L           88 QSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG  160 (213)
T ss_dssp             EEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             EeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence            9999876  234566778887    45555554544455589999999999644454 599999999999753

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=2e-17  Score=119.05  Aligned_cols=130  Identities=18%  Similarity=0.318  Sum_probs=92.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--ccc------------CCCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQL------------PLNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~------------~~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++.  ..+            ....++.+..   ...|.|.++.. +|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEA-DDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCH-HHCeEE
Confidence            44567889999999999998888899999843  221            1122333322   23799999998 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        182 WCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      +|.+.+..+........|.|..   +|.+...+....+..|+.++|.|.+.+..|. +.|.|+++|+.+..+
T Consensus        86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~  157 (210)
T 1lk3_L           86 FCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDG  157 (210)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTT
T ss_pred             EEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCC
Confidence            9999987653333445666654   4544443333334579999999999644665 489999999998765

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.73  E-value=1.5e-17  Score=120.01  Aligned_cols=130  Identities=18%  Similarity=0.307  Sum_probs=93.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--cc------------CCCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL------------PLNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~------------~~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++.  ..            ....++.+..   ...|.|.++.. +|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y   86 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET-EDFGMY   86 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCCh-hhCEEE
Confidence            445678899999999999998888999998532  11            1112333332   23799999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecccc
Q psy14532        182 WCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      +|.+.+..+........|.|..   +|.+...+.......|+.++|.|.+.+..|.+ .+.|+++|+.+..+
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~  158 (213)
T 3d9a_L           87 FCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  158 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             EEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcce
Confidence            9999987654334445666655   45544433333345799999999996446665 89999999998766

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.73  E-value=2.2e-17  Score=115.51  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=91.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+.+|+.+.|.|.+.+.+.+ .+.|++++..+..       ..+.|.|.+++. +|+|.|+|.+.+..+   +..+
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-------~~~~L~i~~v~~-~d~G~Y~C~~~~~~~---s~~~   79 (176)
T 1f2q_A           11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKF-EDSGEYKCQHQQVNE---SEPV   79 (176)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------CSSEEEECSCCG-GGCEEEEEECTTSSC---CCCE
T ss_pred             CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-------CceEEEEeccce-ecCEEEEEEcCCccc---cccE
Confidence            444678999999999999887764 7999999887653       357899999997 999999999987543   4567


Q ss_pred             EEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        198 HISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       198 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      .|.|..++.... .....+.+|+.+.|.|.+..+.|.+.+.|+++|..+..
T Consensus        80 ~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (176)
T 1f2q_A           80 YLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY  129 (176)
T ss_dssp             EEEEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS
T ss_pred             EEEEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee
Confidence            777774443322 23456789999999999966778889999999998853

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.73  E-value=1.7e-16  Score=113.93  Aligned_cols=128  Identities=20%  Similarity=0.289  Sum_probs=95.3

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccC-------------------CCcceEEecCCeEEEEecccCCCCcEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-------------------LNRRQKVFPNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~-------------------~~~~~~~~~~~~l~i~~~~~~~~~g~y  181 (258)
                      ...+.+|+.+.|.|...+.+.+.+.|++++....                   ...+..+..++.|.|.+++. +|+|.|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~-~D~G~Y   86 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM-KDMGVY   86 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCG-GGCEEE
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccc-cCCeEE
Confidence            3567899999999998788888999998754221                   12244455567899999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeecCCccccC-CCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        182 WCTATNKQGRSSSQNVHISVTVPPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      +|.+.+..+...+..+.|.|..++..+.. .....+..|+.+.|.|.+ .+.| +.+.|+++|..+..+..
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~~~~~  155 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQLTER  155 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEEC-SCTT-CEEEEEETTEECCCCSS
T ss_pred             EEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEEC-CCCC-CceEEEECCEeCCCCCC
Confidence            99999986445566777888765432221 112228889999999999 5666 79999999999986543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.73  E-value=2.4e-17  Score=117.52  Aligned_cols=122  Identities=20%  Similarity=0.271  Sum_probs=88.1

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEecccCCCCcEEEEEEEeCC-C-CCccce
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENVQKDHDRGVYWCTATNKQ-G-RSSSQN  196 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-~-~~~~~~  196 (258)
                      ...+.+|+.++|.|.+.+.+. .+.|++++..+.....  ......+.|.|.++.. +|+|.|+|.+.|.. + ...+..
T Consensus        13 ~~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~g~~~~s~~   90 (198)
T 1ugn_A           13 GSVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITW-EHTGRYRCYYGSDTAGRSESSDP   90 (198)
T ss_dssp             CSEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCG-GGCEEEEEEEEETTTEECCCCCC
T ss_pred             CCcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCH-HHCeEEEEEEECCCCCcccCCcc
Confidence            357889999999999988765 6999999887642111  1123567899999997 99999999999976 3 234567


Q ss_pred             EEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecc
Q psy14532        197 VHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  247 (258)
Q Consensus       197 ~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~  247 (258)
                      +.|.|..   +|.+...+ ...+.+|+.++|.|.+. +. .+.|.|+++|..+.
T Consensus        91 ~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~-~~-~~~v~W~k~g~~~~  141 (198)
T 1ugn_A           91 LELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQ-VA-FDGFILCKEGEDEH  141 (198)
T ss_dssp             EEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECS-SC-CSEEEEEEC-----
T ss_pred             EEEEEcccccCCccccCC-ccccCCCCcEEEEEecC-CC-CcEEEEEECCCccC
Confidence            7888876   33333333 35688999999999994 55 67999999999874

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.73  E-value=2.3e-17  Score=118.84  Aligned_cols=125  Identities=21%  Similarity=0.270  Sum_probs=93.4

Q ss_pred             eecCCcEEEEeeeCcc-cCceEEEEeCCcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        124 AIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      ...++.+.|.|.+.+. |.+.+.|++++..+....+..+...   ..|.|.++.. +|+|.|+|.+.+..+. ....+.|
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~~n~~~~-~~~~~~l   91 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP-NDKGKYVMELFDGKTG-HQKTVDL   91 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCG-GGCEEEEEEEECSSCE-EEEEEEE
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCc-ccCEEEEEEEecCCcc-eEEEEEE
Confidence            3456778888888774 5789999999998877666554333   2499999997 9999999999997663 3344555


Q ss_pred             Eeec--------------------CC-ccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccccc
Q psy14532        200 SVTV--------------------PP-KIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG  251 (258)
Q Consensus       200 ~v~~--------------------~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~~  251 (258)
                      .+..                    .| .+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..+..
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~  163 (212)
T 2r15_A           92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDH  163 (212)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSS
T ss_pred             EEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCC
Confidence            4431                    22 22223444578899999999999 5899999999999999987654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=117.22  Aligned_cols=122  Identities=16%  Similarity=0.215  Sum_probs=91.7

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE--ecCCeEEEEecccCCCCcEEEEEEEeCCC-CCccceEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--FPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVH  198 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~  198 (258)
                      ..+.+|+.++|.|.+.+ +.+.+.|++++..+........  ...+.|.|.++.. +|+|.|+|.+.|..+ ...+..+.
T Consensus        14 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~s~~~~   91 (196)
T 3p2t_A           14 SVISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTE-DYAGRYRCYYRSPVGWSQPSDPLE   91 (196)
T ss_dssp             SEEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCG-GGCEEEEEEEEETTEEBCCCCCEE
T ss_pred             CcCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCc-ccCceEEEEEeCCCcccCCCccEE
Confidence            37889999999999988 6789999999987754322211  2345799999997 999999999999876 34566777


Q ss_pred             EEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        199 ISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       199 l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      |.|..   +|.+...+. ..+.+|+.++|.|.+. + +.+.+.|+++|..+..
T Consensus        92 l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~  141 (196)
T 3p2t_A           92 LVMTGAYSKPTLSALPS-PLVTSGKSVTLLCQSR-S-PMDTFLLCKERAAHPL  141 (196)
T ss_dssp             EEEECSSCCCEEEEESC-SEECTTCCEEEEEEEE-E-EEEEEEEEETTCCCGG
T ss_pred             EEecCCCCCCEEEeCCc-ceecCCCeEEEEEecC-C-CCCEEEEEeCCCcccc
Confidence            88764   333333332 3678999999999994 4 3468999999987754

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.73  E-value=2e-17  Score=118.27  Aligned_cols=125  Identities=16%  Similarity=0.234  Sum_probs=92.5

Q ss_pred             CCcceecCCcEEEEeeeCcccC-----ceEEEEe-CCcccCCCcceEEecC------CeEEEEecccCCCCcEEEEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPI-----ESITWQK-GVQQLPLNRRQKVFPN------GTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~-----~~i~W~~-~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      ....+.+|+.+.|.|.+.+.|.     +.+.|++ ++.......+..+..+      ..|.|.++.. +|+|.|+|.+.+
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~~   88 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV-RDSGQYRCLVIC   88 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCG-GGCEEEEEEEEE
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCH-HHCcEEEEEEEe
Confidence            3567889999999999988775     7999999 5544444444444332      5799999997 999999999999


Q ss_pred             CCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        188 KQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       188 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      ..+. .+..+.|.|..++..+... ...+..|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        89 ~~~~-~~~~~~l~V~~~~~~p~~~-~~~~~~g~~v~l~C~~-~g~P~p~v~W~~~~~~~~~  146 (202)
T 3bp6_B           89 GAAW-DYKYLTVKVKASYMRIDTR-ILEVPGTGEVQLTCQA-RGYPLAEVSWQNVSVPANT  146 (202)
T ss_dssp             TTEE-EEEEEEEEEEBCCCCEEEE-EEECTTTCCEEEEEEE-EEBSCCEEEETTCCSCCEE
T ss_pred             CCCc-ceEEEEEEecCCCCcccEE-EEecCCCCeEEEEEEc-cccCCceEEEEeCCCCccC
Confidence            8763 3667778887665322221 1245679999999999 6899999999998876643

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.72  E-value=5.5e-17  Score=113.34  Aligned_cols=118  Identities=17%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCce-EEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+.+|+.+.|.|.+.+.|.+. +.|++++..+..       ..+.|.|.++.. +|+|.|+|.+.+...   +..+
T Consensus        14 p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~L~i~~~~~-~d~G~Y~C~~~n~~~---s~~~   82 (175)
T 1fnl_A           14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATV-NDSGEYRCQTNLSTL---SDPV   82 (175)
T ss_dssp             SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCSEEEESSCCG-GGCEEEEEECSSSCC---CCCE
T ss_pred             CCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-------CceEEEEeCCCc-ccCEEEEEEeeCCcc---cccE
Confidence            3445788999999999999887665 899999876542       456899999997 999999999998543   4667


Q ss_pred             EEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        198 HISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       198 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      .|.|..++..... ....+.+|+.+.|.|.+..+.|.+.+.|+++|..+..
T Consensus        83 ~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~  132 (175)
T 1fnl_A           83 QLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY  132 (175)
T ss_dssp             EEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE
T ss_pred             EEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC
Confidence            7788755443322 3356788999999999954455569999999998853

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.72  E-value=5.8e-17  Score=115.06  Aligned_cols=121  Identities=22%  Similarity=0.284  Sum_probs=93.4

Q ss_pred             cceecCCcEEEEeeeCcccCc--eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      +.+..|++++|.|.+ +.|.+  .|.|.+.+..+  ...........|.|.+++. +|+|.|.|.+.+..+ .....+.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~-~~~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASL-SAAGTRVCVGSCGGR-TFQHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCG-GGCEEEEEEEEETTE-EEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCc-ccCceEEEEEEeCCC-ceEEEEEE
Confidence            578899999999999 87777  99999865444  2222223345799999998 999999999999865 35577899


Q ss_pred             EeecCCccccCCCCCccCCCCeeeEEEEeccCCCC----ceeEEEECCEecccc
Q psy14532        200 SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP----LTISWLKNGLPILSA  249 (258)
Q Consensus       200 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~----~~~~W~~~g~~l~~~  249 (258)
                      .|..+|....... ..+..|+.+ |.|.+.+.+|.    +.|.|++||+.|...
T Consensus        92 tV~~~P~~~~i~~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~  143 (210)
T 1gsm_A           92 LVYAFPNQLTVSP-AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA  143 (210)
T ss_dssp             EEEBCCSEEEEES-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred             EEEecCCCcEEcc-ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence            9999887544322 256778888 99999655674    589999999999654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.72  E-value=3.1e-17  Score=117.07  Aligned_cols=129  Identities=25%  Similarity=0.331  Sum_probs=95.9

Q ss_pred             CCCcceecCCcEEEEee-eCcccC-ceEEEEeCCcccCC---CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCP-VAGYPI-ESITWQKGVQQLPL---NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~-~~~~~~-~~i~W~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      .....+.+|+.+.|.|. +.+.|. +.+.|++++..+..   ........++.|.|.++.. +|+|.|+|.+.+..+...
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCG-GGCEEEEEEEEEGGGTEE
T ss_pred             CceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCc-ccCeEEEEEEEecCCCcc
Confidence            45677899999999999 788888 99999999877642   2223334567899999997 999999999998654222


Q ss_pred             --cceEEEEeec-------CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        194 --SQNVHISVTV-------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       194 --~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                        ...+.+.+..       +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~  157 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMPST  157 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCCTT
T ss_pred             hhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCCCc
Confidence              2334443332       2323333335567889999999999 68899999999999988754

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=124.87  Aligned_cols=170  Identities=12%  Similarity=0.161  Sum_probs=104.7

Q ss_pred             eceeee-ecCCCceEEEEEEeec---CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          8 KFIQQT-LQPGPPVSLKCIATGN---PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         8 ~~~~~~-~~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      .+.... +.+|++++|.|.+.+.   |. ..|.|+|++..+..........          +. ........+|.|..+ 
T Consensus       173 ~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~----------~~-~~~~~~~s~L~I~~~-  240 (376)
T 2aty_A          173 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREE----------QF-NSTFRSVSELPIMHQ-  240 (376)
T ss_pred             CcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCc----------cc-CCcEEEEEEEEechH-
Confidence            333334 7899999999999886   32 3799999876543221000000          00 011122446899999 


Q ss_pred             cCCCceEEEEEEEeCCccee-eceEEE--EEecCCeecc-CCCcceecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCC
Q psy14532         83 KDHDRGVYWCTATNKQGRSS-SQNVHI--SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLN  156 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~-~~~~~l--~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~  156 (258)
                      +.+|+|.|+|.+.+..+... ...+.+  .+..+|.+.. ........|+.++|.|.+.+. | ...|+|++++..+...
T Consensus       241 ~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~  320 (376)
T 2aty_A          241 DWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENY  320 (376)
T ss_pred             hccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCe
Confidence            99999999999998765332 122222  2333443332 233334458899999999885 4 4589999999876432


Q ss_pred             cce--EEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        157 RRQ--KVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       157 ~~~--~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ...  ....+++      |.|..... +|.|.|+|.|.|...
T Consensus       321 ~~~~~~~~~dgty~~~s~L~i~~~~~-~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          321 KNTQPIMNTNESYFVYSKLNVQKSNW-EAGNTFTCSVLHEGL  361 (376)
T ss_pred             EeCCceECCCCCEEEEEEEEEcHHHh-CCCCcEEEEEEeCCC
Confidence            211  1123333      55555544 678999999999754

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.72  E-value=1.7e-18  Score=125.00  Aligned_cols=174  Identities=18%  Similarity=0.219  Sum_probs=106.7

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeecCC---CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      +|.+. ..|....+.+|++++|.|.+.+.+.   +.|.| ++ ..+....  ..  ..     ...+..+  .....+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~--~~--~~-----~~~~~g~--~~~~~~L~   69 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAV--QG--PP-----ERDLCGC--YSVSSVLP   69 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCE--EC--CC-----CCCSTTC--CCEEEECT
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcc--cC--Cc-----eECCCCc--EEEEEEEE
Confidence            56664 4577888899999999999988643   68999 43 3332110  00  00     0000111  01234688


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEE---EecCCeecc--CCCcceecCCcEEEEeeeCcc-cC-ceEEEEeCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHIS---VTGAPFVRP--MGNVSAIAGEPLYLGCPVAGY-PI-ESITWQKGV  150 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~---v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~  150 (258)
                      |.++ +..|+|.|+|.+.+..+... ....+.   +..+|.+..  .....+..|+.+.|.|.+.|. |. +.|.|++++
T Consensus        70 I~~~-~~~D~g~Y~C~~~~~~~~~~-~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  147 (214)
T 1ow0_A           70 GCAE-PWNHGKTFTCTAAYPESKTP-LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGS  147 (214)
T ss_dssp             TTHH-HHHHTCEEEEEECCSSCSSC-EEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETT
T ss_pred             EeHH-HcCCCCeEEEEEecCCCCCc-eeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECC
Confidence            8888 88999999999998765432 222332   233443322  222335678899999999884 53 499999999


Q ss_pred             cccCCCc----ceEEe---cCCeEEEEe---ccc--CCCCcEEEEEEEeCCC
Q psy14532        151 QQLPLNR----RQKVF---PNGTLLIEN---VQK--DHDRGVYWCTATNKQG  190 (258)
Q Consensus       151 ~~~~~~~----~~~~~---~~~~l~i~~---~~~--~~~~g~y~C~~~~~~~  190 (258)
                      ..+....    .....   .++++.+..   +..  .++.|.|+|.|.|...
T Consensus       148 ~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          148 QELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             EECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             EECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            8775442    11233   455544432   222  1458999999999754

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.72  E-value=5e-17  Score=117.19  Aligned_cols=130  Identities=14%  Similarity=0.294  Sum_probs=93.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--cc------------CCCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL------------PLNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~------------~~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++...  ..            ....++.+.   ...+|.|.+++. +|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y   86 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES-EDIGSY   86 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc-ccCEEE
Confidence            445678899999999999988888999998431  11            012233322   223799999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEe---ecCCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEECCEecccc
Q psy14532        182 WCTATNKQGRSSSQNVHISV---TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSA  249 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~  249 (258)
                      +|.+.+..+........|.|   ..+|.+...+....+..|+.++|.|.+.+++| .+.+.|+++|+.+..+
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           87 YCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             EEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            99999875433445566777   44555555444445567889999999964454 4689999999999764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.71  E-value=3e-16  Score=116.39  Aligned_cols=175  Identities=19%  Similarity=0.298  Sum_probs=99.6

Q ss_pred             eceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      .+..+.+.+|++|+|.|.+.+.  ....+.|+|..  ......   ..... +........+..|..+..+     .+|.
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  105 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWV---GWITPYGGYTNYADSVKGRFTISADTSKNTAYLQ  105 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEE---EEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEE---EEEecCCCceecCCCCCCcEEEEEeCCCCEEEEE
Confidence            3345778999999999998753  34589999842  111000   00000 0011111222333333322     3499


Q ss_pred             EeecccCCCceEEEEEEEeCCc----------ceeeceEEEEEecC----Ceec-cCCCcceecCCcEEEEeeeCc-cc-
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG----------RSSSQNVHISVTGA----PFVR-PMGNVSAIAGEPLYLGCPVAG-YP-  140 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~----------~~~~~~~~l~v~~~----~~~~-~~~~~~~~~g~~~~l~C~~~~-~~-  140 (258)
                      |.++ +.+|+|.|.|.+.+..+          ........|.|...    |.+. ..+...+..|+.+.|.|.+.+ .| 
T Consensus       106 I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~  184 (256)
T 3sob_H          106 MNSL-RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  184 (256)
T ss_dssp             ECSC-CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSS
T ss_pred             ECCC-CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECC
Confidence            9999 99999999999986431          11224456777532    2222 123334568999999999987 45 


Q ss_pred             CceEEEEeCCcccCCCcc---eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        141 IESITWQKGVQQLPLNRR---QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       141 ~~~i~W~~~~~~~~~~~~---~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ...+.|  ++..+.....   .....+      ..|.|..... +| |.|+|.+.|...
T Consensus       185 ~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d-~~ytC~v~~~~~  239 (256)
T 3sob_H          185 PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  239 (256)
T ss_dssp             CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGT-TT-CCCEEEEEEGGG
T ss_pred             CeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHc-CC-ceEEEEEEeCCC
Confidence            457999  5544432110   111122      2577777765 78 999999999754

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.71  E-value=7.1e-16  Score=110.89  Aligned_cols=203  Identities=16%  Similarity=0.263  Sum_probs=132.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec-C---CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN-P---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +.+...|....+..|+.++|+|.+.+. |   ...++|+|++..+...                          .+.|.|
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa--------------------------T~tLti   56 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------------------------TATLTV   56 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC--------------------------SSEEEE
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC--------------------------cceEEe
Confidence            345667888889999999999998763 5   3489999999876543                          447888


Q ss_pred             eecccCCCceEEEEEEEeCCcceee-ceEEEEEecCCee--ccCCCcceecCCcEEEEeee--Cc-cc-----CceEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSS-QNVHISVTGAPFV--RPMGNVSAIAGEPLYLGCPV--AG-YP-----IESITWQ  147 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~l~v~~~~~~--~~~~~~~~~~g~~~~l~C~~--~~-~~-----~~~i~W~  147 (258)
                      ..+ ...|+|.|+|.+.+..+.... ..+.+.....+.+  ..+....+..+..+.|.+.+  .| .+     ...+.|+
T Consensus        57 ~s~-t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWy  135 (304)
T 3shs_A           57 ADA-TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWS  135 (304)
T ss_dssp             SSC-CGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEE
T ss_pred             eec-cccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEe
Confidence            888 899999999999998775431 2222222221111  11233344556788888876  43 33     4599999


Q ss_pred             eCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC-CCccceEEEEeecCCccccCCCCCccCCCCeeeEEE
Q psy14532        148 KGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQC  226 (258)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C  226 (258)
                      +++..+...        ..+.+..... .++|.|+|++.+..+ ...+..+.+.+...+.-........+..|+.+.|.-
T Consensus       136 Kngt~IsgA--------q~lT~sS~Ta-teaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~  206 (304)
T 3shs_A          136 KGEDVIDTT--------QDITIQEFTA-DKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNY  206 (304)
T ss_dssp             ETTEEEESS--------SEEEECSCCG-GGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECC
T ss_pred             eCCeEccCc--------cccceeeEEe-cCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEE
Confidence            998765422        2445555555 889999999998864 455666666554333222223344567788888775


Q ss_pred             Eec-------cCCCC--ceeEEEE
Q psy14532        227 LVT-------KGDPP--LTISWLK  241 (258)
Q Consensus       227 ~~~-------~~~p~--~~~~W~~  241 (258)
                      .+.       .|.|.  ..+.|+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~  230 (304)
T 3shs_A          207 VVSEDIVGDSSGMPNLTIKYNWYL  230 (304)
T ss_dssp             EEEEECCSCCTTCCEEEEEEEEEE
T ss_pred             EEeeccccCCCCCCceEEEEEEEE
Confidence            542       23343  3577873

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.71  E-value=9.5e-17  Score=103.94  Aligned_cols=97  Identities=21%  Similarity=0.243  Sum_probs=77.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+...   .++.+.             ......+|.|.++
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~---~~~~~~-------------~~~~~~~L~I~~v   70 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES---EHMKVE-------------NSENGSKLTILAA   70 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS---SSEEEE-------------ECSSEEEEEETTC
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC---CCEEEE-------------EcCCEEEEEECCC
Confidence            788888889999999999999999999999999999998777543   122111             0011457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCee
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV  116 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  116 (258)
                       +..|+|.|+|.+.|..+... ..+.|.|...|..
T Consensus        71 -~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~p~~  103 (114)
T 2cqv_A           71 -RQEHCGCYTLLVENKLGSRQ-AQVNLTVVDKPDP  103 (114)
T ss_dssp             -CTTTCEEEEEEEECSSCEEE-CCEEEEEECSCSC
T ss_pred             -ChhcCEEEEEEEEECCCcEE-EEEEEEEECCCCC
Confidence             99999999999999998776 7888999876543

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.71  E-value=3.5e-16  Score=113.82  Aligned_cols=175  Identities=18%  Similarity=0.250  Sum_probs=100.7

Q ss_pred             eceeeeecCCCceEEEEEEeec--CCCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeeee-----CCcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      .+..+.+.+|++|+|.|.+.+.  ....+.|||..  ......   ..... +........+..|..+..     +.+|.
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (226)
T 3mlr_H            6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWI---GIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQ   82 (226)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE---EEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEE
T ss_pred             cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEE---EEEecCCCccccCcccCCcEEEEecCCCCEEEEE
Confidence            3456889999999999998753  34589999842  111000   00000 000011112223333222     23599


Q ss_pred             EeecccCCCceEEEEEEEeCCc--------ceeeceEEEEEecC----Ceec-cCCCcceecCCcEEEEeeeCc-cc-Cc
Q psy14532         78 IENVQKDHDRGVYWCTATNKQG--------RSSSQNVHISVTGA----PFVR-PMGNVSAIAGEPLYLGCPVAG-YP-IE  142 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~----~~~~-~~~~~~~~~g~~~~l~C~~~~-~~-~~  142 (258)
                      |.++ +.+|+|.|.|.+.+..+        ........|.|...    |.+. ......+..|+.+.|.|.+.+ .| .+
T Consensus        83 I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  161 (226)
T 3mlr_H           83 WTTL-QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  161 (226)
T ss_dssp             ESSC-CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCC
T ss_pred             ECCC-CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCe
Confidence            9999 99999999999976431        11113345666432    2222 122223457899999999987 44 45


Q ss_pred             eEEEEeCCcccCCCc---ceEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        143 SITWQKGVQQLPLNR---RQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       143 ~i~W~~~~~~~~~~~---~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+.|  ++..+....   ......++      .|.|.+... +| |.|+|.|.|...
T Consensus       162 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-~~ytC~v~h~~~  214 (226)
T 3mlr_H          162 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  214 (226)
T ss_dssp             EEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGT-TT-CCCEEEEEEGGG
T ss_pred             EEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHc-CC-CeEEEEEEECCC
Confidence            8999  444332111   01112222      577777765 77 999999999754

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.70  E-value=7.6e-17  Score=117.98  Aligned_cols=176  Identities=14%  Similarity=0.266  Sum_probs=102.4

Q ss_pred             CCcc-eeeceeee-ecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc
Q psy14532          2 HPQL-IYKFIQQT-LQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT   75 (258)
Q Consensus         2 ~p~~-~~~~~~~~-~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (258)
                      +|.+ +..+.... +..|++++|.|.+.++.    ...|.|+|+|..+..... ......          ..........
T Consensus        22 ~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~-~~~~~~----------~~g~~~~~s~   90 (240)
T 4acp_A           22 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT-KPREEQ----------YNSTYRVVSV   90 (240)
T ss_dssp             -CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEE-CCCEEC-------------CEEEEEE
T ss_pred             CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCcee-ccceEC----------CCCeEEEEEE
Confidence            3444 44555555 66799999999999863    337999999988754310 000000          0001111235


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcce-eeceEEE--EEecCCeecc-CCCcceecCCcEEEEeeeCc-ccCc-eEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHI--SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKG  149 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~i~W~~~  149 (258)
                      |.|... ..+|.|.|+|.+.+..+.. ....+.+  .+..+|.+.. ........|+.+.|.|.+.+ +|.+ .+.|+++
T Consensus        91 L~i~~~-~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~  169 (240)
T 4acp_A           91 LTVLHQ-DWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN  169 (240)
T ss_dssp             EECCHH-HHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EEEech-hccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEEC
Confidence            777767 7778999999999977532 2122222  1223343332 22222334889999999988 5553 8999999


Q ss_pred             CcccCCCcc--eEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        150 VQQLPLNRR--QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       150 ~~~~~~~~~--~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +..+.....  .....+++      |.+..... .+.+.|+|.|.+..-
T Consensus       170 g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~-~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          170 GQPENNYKATPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEAL  217 (240)
T ss_dssp             TEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTTS
T ss_pred             CEECCCcCccCceECCCCCEEEEEEEEEChHHh-CCCCEEEEEEEECCC
Confidence            987643211  11123443      44444433 578999999999753

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.70  E-value=1.3e-16  Score=114.03  Aligned_cols=131  Identities=13%  Similarity=0.122  Sum_probs=92.7

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce---E-EecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ---K-VFPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~---~-~~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +|.+...+...+.+|++++|.|.+.+ +.+.+.|+|++..+......   . ....+.|.|.+++. +|+|.|+|.+.+.
T Consensus         8 ~P~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~~~   85 (201)
T 1nkr_A            8 KPSLLAHPGPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQ-DLAGTYRCYGSVT   85 (201)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCG-GGCEEEEEEEEBT
T ss_pred             CCeEEEEcCCccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCc-ccCeEEEEeEecC
Confidence            44444333466889999999999974 67799999998765422111   0 12345799999997 9999999999865


Q ss_pred             C----CCCccceEEEEeecC---CccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        189 Q----GRSSSQNVHISVTVP---PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       189 ~----~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      .    ....+..+.|.|...   |.+...+. ..+.+|+.++|.|.+. + +.+.|.|+|+|..+..
T Consensus        86 ~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~  149 (201)
T 1nkr_A           86 HSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSR-S-SYDMYHLSREGEAHER  149 (201)
T ss_dssp             TBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEES-S-CCSEEEEEETTCSSCE
T ss_pred             CCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCC-C-CCceEEEEECCcccCc
Confidence            2    123456677777653   44433333 4688999999999994 4 4678999999988764

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.70  E-value=6.4e-17  Score=116.55  Aligned_cols=130  Identities=18%  Similarity=0.335  Sum_probs=90.2

Q ss_pred             CCCcceecCCcEEEEeeeCccc---CceEEEEeCC--ccc------------CCCcceEEec---CCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP---IESITWQKGV--QQL------------PLNRRQKVFP---NGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~~--~~~------------~~~~~~~~~~---~~~l~i~~~~~~~~~  178 (258)
                      +....+.+|+.+.|.|.+.+.+   .+.+.|++++  ..+            ....++....   ...|.|.++.. +|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~   85 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT-EDE   85 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGC
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc-cCC
Confidence            4456788999999999998866   4789999863  221            1122333322   23799999997 999


Q ss_pred             cEEEEEEEeCCCCCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecccc
Q psy14532        179 GVYWCTATNKQGRSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       179 g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      |.|.|.+.+..+........|.|.    .+|.+...+....+..|+.++|.|.+.+.+|++ .|.|+++|+.+..+
T Consensus        86 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  161 (212)
T 1q0x_L           86 AIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG  161 (212)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             EEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence            999999998765323344556664    345444433333445799999999996445553 89999999998765

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.70  E-value=1.8e-16  Score=116.43  Aligned_cols=128  Identities=27%  Similarity=0.399  Sum_probs=97.9

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc----eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR----QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....    ........|.|.++.. +|+|.|+|.+.+..+. .+.
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~~~~~~-~~~  100 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQ  100 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCG-GGCEEEEEEEEETTEE-EEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCc-ccCEEEEEEEeecCCc-eEE
Confidence            456788999999999999988899999999987754332    2223456799999997 9999999999998763 445


Q ss_pred             eEEEEeecCCcc----c-cCCCCCccCCCCeeeEEEEeccCCCCceeEEEE----CCEeccccc
Q psy14532        196 NVHISVTVPPKI----A-PFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSAM  250 (258)
Q Consensus       196 ~~~l~v~~~p~~----~-~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~g~~l~~~~  250 (258)
                      .+.|.|...+..    . ..+....+..|+.+.|.|.+ .+.|.+.+.|++    +|..+....
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~  163 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDG  163 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE-ECSSCCEEEEEEECCSSSCSSCTTT
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE-ecCCCCEEEEEEcccCCCcccCCCC
Confidence            667777653221    1 12345568889999999999 688889999999    888776543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.70  E-value=5.2e-17  Score=117.17  Aligned_cols=125  Identities=12%  Similarity=0.106  Sum_probs=89.2

Q ss_pred             CCcceecC--CcEEEEeeeCcccCceEEEEeC---CcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        120 GNVSAIAG--EPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       120 ~~~~~~~g--~~~~l~C~~~~~~~~~i~W~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      ..+.+.+|  +.+.|.|.+.+ |.+.++|+++   +..+.............|.|.++.. +|+|.|+|.+.+..+...+
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~n~~~~~~s   92 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI-SYAGMVFCEAKINDESYQS   92 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGT-TTCSEEEEEEC----CEEC
T ss_pred             eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCCh-hcCceEEEEEEECCeeEEE
Confidence            45678889  99999999986 7789999884   5555555455555677899999997 9999999999985443344


Q ss_pred             ceEEEEeec--CCccccCCCCC-ccCCCCeeeEEEEeccCCC--CceeEEEECCEecc
Q psy14532        195 QNVHISVTV--PPKIAPFEFQP-DLHSGDRAGVQCLVTKGDP--PLTISWLKNGLPIL  247 (258)
Q Consensus       195 ~~~~l~v~~--~p~~~~~~~~~-~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~l~  247 (258)
                      ..+.|.|..  +|.+...+... .+.+|+.++|.|.+. +.|  .+.+.|+++|+.+.
T Consensus        93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~~~i~W~~~g~~~~  149 (213)
T 2x1w_L           93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQ  149 (213)
T ss_dssp             CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEE-ECTTBCCEEEEECSCSSCC
T ss_pred             EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEE-CCCCCceEEEEEecCCccc
Confidence            446777644  22233333333 788999999999994 533  46899999988753

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=100.42  Aligned_cols=93  Identities=34%  Similarity=0.580  Sum_probs=76.1

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+....  .++                ....+++|.|.+
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~----------------~~~~~~~L~i~~   68 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD--PRA----------------TIQEQGTLQIKN   68 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSC--SSC----------------EECTTCCEEEES
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCC--CCE----------------EEcCCCEEEEcc
Confidence            37888888999999999999999999999999999999987765321  111                122456899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      + +..|+|.|+|.+.|..|... ..+.|.|..+
T Consensus        69 v-~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~   99 (100)
T 2edj_A           69 L-RISDTGTYTCVATSSSGETS-WSAVLDVTES   99 (100)
T ss_dssp             C-CTTTCCEEEEEEECSSCCCB-CCEEEEEESC
T ss_pred             C-CcccCEEEEEEEEcCCCCEE-EEEEEEEecC
Confidence            9 99999999999999988776 7888888765

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.70  E-value=1.4e-16  Score=114.78  Aligned_cols=126  Identities=21%  Similarity=0.392  Sum_probs=95.9

Q ss_pred             CCcceecCCcEEEEeeeCccc----CceEEEEeCC----------------cccC-----CCcceEEec------CCeEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP----IESITWQKGV----------------QQLP-----LNRRQKVFP------NGTLL  168 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~~----------------~~~~-----~~~~~~~~~------~~~l~  168 (258)
                      ..+.+.+|+.+.|.|.+.+.+    .+.+.|++++                ....     ...+..+..      +.+|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            346788999999999998766    4699999843                2221     122333322      45799


Q ss_pred             EEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEE--CCEec
Q psy14532        169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK--NGLPI  246 (258)
Q Consensus       169 i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~l  246 (258)
                      |.+++. +|+|.|+|.+.+..+ ..+..+.|.|..+|.+...+....+..|+.+.|.|.+..+.|.+.+.|++  ++..+
T Consensus        88 i~~v~~-~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~  165 (214)
T 3jz7_A           88 VTNLQL-SDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM  165 (214)
T ss_dssp             ECSCCG-GGCEEEEEEEEETTE-EEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred             EccCCh-hhCeEEEEEEEeCCC-ccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence            999997 999999999999876 34677889999888876655555688999999999996689999999999  44444


Q ss_pred             c
Q psy14532        247 L  247 (258)
Q Consensus       247 ~  247 (258)
                      .
T Consensus       166 ~  166 (214)
T 3jz7_A          166 P  166 (214)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.70  E-value=3.1e-16  Score=108.94  Aligned_cols=117  Identities=19%  Similarity=0.338  Sum_probs=92.3

Q ss_pred             CCcceecCCcEEEEeeeCccc-CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      ....+.+|+.+.|.|.+.+.| .+.+.|++++..+...       ...+.+.++.. +|+|.|+|.+.+..   .+..+.
T Consensus        12 ~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-------~~~~~~~~~~~-~d~G~Y~C~~~~~~---~s~~~~   80 (170)
T 3ry4_A           12 PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------TQPSYRFKANN-NDSGEYTCQTGQTS---LSDPVH   80 (170)
T ss_dssp             CCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-------CSSEEEEECCG-GGCEEEEEEETTSB---CCCCEE
T ss_pred             CCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-------ccceEEEeccc-ccCeEEEEEEeCCC---ceEeEE
Confidence            345688999999999998876 6799999999877543       34567778887 99999999999753   345677


Q ss_pred             EEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        199 ISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       199 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      |.|..++.+...+ ...+.+|+.+.|.|.+..+.|.+.+.|+++|..+..
T Consensus        81 l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (170)
T 3ry4_A           81 LTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF  129 (170)
T ss_dssp             EEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE
T ss_pred             EEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc
Confidence            8887766443333 456788999999999966778899999999998764

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=1.6e-15  Score=110.24  Aligned_cols=177  Identities=15%  Similarity=0.235  Sum_probs=106.5

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee-----eCC
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNG   74 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   74 (258)
                      .+.+.+..+.+.+|++++|.|.+.+.+  ...+.|+|..  ..+..       ...........+..|..+.     .+.
T Consensus         3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~-------l~~~~~~~~~~~~~R~~~~~~~~~~~~   75 (229)
T 1hxm_A            3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTF-------IYREKDIYGPGFKDNFQGDIDIAKNLA   75 (229)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEE-------EEETTTEECTTTTTTEEEEEEGGGTEE
T ss_pred             ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEE-------EEEcCCccCCCcCCeEEEEEcCCCCEE
Confidence            355667888999999999999988543  4579999852  21110       0000000111122233222     124


Q ss_pred             cEEEeecccCCCceEEEEEEEeCC------cc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccCc-eEE
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQ------GR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPIE-SIT  145 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~------~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~i~  145 (258)
                      +|.|.++ +.+|+|.|.|.+.+..      .. .......|.|.........+.+.+.. ..+.|.|.+.+ +|.+ .+.
T Consensus        76 sL~I~~v-~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~  153 (229)
T 1hxm_A           76 VLKILAP-SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRIN  153 (229)
T ss_dssp             EEEESSC-CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEE
T ss_pred             EEEECcC-CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEE
Confidence            7999999 9999999999998753      11 12234577776532111122222222 23589999987 4554 899


Q ss_pred             EEeCCcccCCCc-ceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        146 WQKGVQQLPLNR-RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       146 W~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      |.++ ..+.... ......++++.+......++.+.|+|.|.+...
T Consensus       154 W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          154 LVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             EECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             EecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence            9998 6554322 222345677777654432688999999999753

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.70  E-value=1e-16  Score=114.48  Aligned_cols=127  Identities=20%  Similarity=0.319  Sum_probs=91.3

Q ss_pred             CcceecCCcEEEEeeeC----cccCceEEEEeCCcccCC------------CcceE--EecCCeEEEEecccCCCCcEEE
Q psy14532        121 NVSAIAGEPLYLGCPVA----GYPIESITWQKGVQQLPL------------NRRQK--VFPNGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~----~~~~~~i~W~~~~~~~~~------------~~~~~--~~~~~~l~i~~~~~~~~~g~y~  182 (258)
                      .+.+..|+.+.|.|.+.    +.+.+.+.|++++..+..            ..+..  ...+.+|.|.+++. +|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~-~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRP-SDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCG-GGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccc-hhCeEEE
Confidence            35678999999999985    346779999998876520            11222  12356899999997 9999999


Q ss_pred             EEEEeCCCCCc----cceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        183 CTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       183 C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      |.+.+..+...    ...+.|.|..++..+... ......|+.+.|.|.+..+.|.+.|.|+++|+.+...
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~-~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~  151 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSIS-DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI  151 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEE-EEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCS
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceE-eccCCCCCeEEEEEecCCccCCCEEEEEECCEECccc
Confidence            99999765433    346677776653221111 1112458899999999668999999999999998754

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=112.39  Aligned_cols=129  Identities=17%  Similarity=0.225  Sum_probs=90.6

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccC---C---------------CcceEEecCCeEEEEecccCCCCcE
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLP---L---------------NRRQKVFPNGTLLIENVQKDHDRGV  180 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~---~---------------~~~~~~~~~~~l~i~~~~~~~~~g~  180 (258)
                      ..+.+.+|++++|.|.+.+ .+.+.+.|++++..+.   .               ..+..+..+++|.|.+++. +|+|.
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~-~D~G~   84 (193)
T 2if7_A            6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKM-EDTGS   84 (193)
T ss_dssp             EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCG-GGCEE
T ss_pred             eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCc-ccCce
Confidence            3466789999999999875 4456999999865331   0               0133444577899999998 99999


Q ss_pred             EEEEEEeCCCCCccceEEEEeecCCccccCCCC-CccCCCC-eeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQ-PDLHSGD-RAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       181 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~-~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      |+|.+.+..+. ....+.|.|..++..+..... .....|. .++|.|.+.++.|.+.|.|+++|+.+..+.
T Consensus        85 Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~  155 (193)
T 2if7_A           85 YRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP  155 (193)
T ss_dssp             EEEEEECSSCE-EEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS
T ss_pred             EEEEEEecCCC-eEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC
Confidence            99999988763 335677888765533222111 1223455 899999996446789999999998876543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.69  E-value=1.8e-16  Score=115.52  Aligned_cols=127  Identities=22%  Similarity=0.401  Sum_probs=97.5

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc----eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR----QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....    ........|.|.++.. +|+|.|+|.+.+..+. ...
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~~~-~~~  104 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGS-INH  104 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCG-GGCEEEEEEEEETTEE-EEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCc-ccCEEEEEEEecccCc-ccc
Confidence            456788999999999999989899999999987754432    2223445799999997 9999999999998763 456


Q ss_pred             eEEEEeecCCccc-----cCCCCCccCCCCeeeEEEEeccCCCCceeEEEE----CCEecccc
Q psy14532        196 NVHISVTVPPKIA-----PFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSA  249 (258)
Q Consensus       196 ~~~l~v~~~p~~~-----~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~g~~l~~~  249 (258)
                      .+.|.|...+...     ..+....+..|+.+.|.|.+ .+.|.+.+.|++    +|..+..+
T Consensus       105 ~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~g~~~~~~  166 (231)
T 3ojm_B          105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPD  166 (231)
T ss_dssp             EEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE-ECSSCCEEEEEEECCBTTBSBCTT
T ss_pred             cEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE-ecCCCCEEEEEECCCCCCccccCC
Confidence            6677776543321     12344567889999999999 588889999999    77776543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.69  E-value=6.5e-16  Score=117.41  Aligned_cols=154  Identities=21%  Similarity=0.238  Sum_probs=104.4

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee-cccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN-VQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~d~G   88 (258)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   .++.+.             ......+|.|.+ + ...|.|
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~-------------~~~~~~~l~i~~~~-~~~d~G  174 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN---GHYQVI-------------VTRSFTSLVFPNGV-ERKDAG  174 (305)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS---SSCEEE-------------ECSSEEEEEETTCC-CSTTCE
T ss_pred             ccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC---CcEEEE-------------EcCCceEEEEecCC-ccCccE
Confidence            4566889999999999999999999999998776543   111111             001235788999 9 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeee--------------CcccCceEEEEeCCcccC
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV--------------AGYPIESITWQKGVQQLP  154 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~--------------~~~~~~~i~W~~~~~~~~  154 (258)
                      .|+|.+.|..|... ..+.|.|...|............+..+.|.|..              ...+.+...|.+.+.   
T Consensus       175 ~Y~C~a~N~~G~~~-~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~---  250 (305)
T 2nzi_A          175 FYVVCAKNRFGIDQ-KTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ---  250 (305)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEE---
T ss_pred             EEEEEEEeCCCcee-eEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcc---
Confidence            99999999998876 778888876653221111112244566666654              222222233332211   


Q ss_pred             CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       155 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                             .....+.|.++.. .+.|.|+|.|.|..|..
T Consensus       251 -------~~~~~~~i~~l~~-~~~y~~~~~A~N~~G~~  280 (305)
T 2nzi_A          251 -------ARETRYTVINLFG-KTSYQFRVIAENKFGLS  280 (305)
T ss_dssp             -------ESSSEEEECSCCS-SCEEEEEEEEEETTEEC
T ss_pred             -------ccCceEEecCCCC-CCeEEEEEEEEeCCccc
Confidence                   1256788999987 89999999999998643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=2.2e-16  Score=99.69  Aligned_cols=93  Identities=26%  Similarity=0.472  Sum_probs=74.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC--CcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN--GTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~   79 (258)
                      ||.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+........                 ....+  .+|.|.
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-----------------~~~~~~~~~L~i~   67 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKM-----------------IVSEKGLHSLIFE   67 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCE-----------------EEETTTEEEEEES
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEE-----------------EEcCCCeEEEEEC
Confidence            68888888899999999999999999999999999999987765421110                 01112  379999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      ++ +..|+|.|+|.+.|..|... ..+.|.|...
T Consensus        68 ~v-~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~   99 (100)
T 2kdg_A           68 VV-RASDAGAYACVAKNRAGEAT-FTVQLDVLAK   99 (100)
T ss_dssp             SC-CGGGCEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred             CC-CcccCEEEEEEEEcCCCeEE-EEEEEEEEec
Confidence            99 99999999999999998766 7888888754

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.69  E-value=1.3e-16  Score=114.85  Aligned_cols=125  Identities=17%  Similarity=0.357  Sum_probs=90.5

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEE---ecCCeEEEEecccCCCCcEEEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKV---FPNGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~---~~~~~l~i~~~~~~~~~g~y~C  183 (258)
                      ...+.+|+.+.|.|.+.  +.+.+.|+++  +....            ...++.+   ..+.+|.|.+++. +|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C   85 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQT-DDEAVYYC   85 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCG-GGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCCh-hHCEEEEE
Confidence            56788999999999998  8889999994  22211            1123322   1234699999997 99999999


Q ss_pred             EEEeCCC-CCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEECCEeccc
Q psy14532        184 TATNKQG-RSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  248 (258)
Q Consensus       184 ~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~  248 (258)
                      .+.+..+ ........|.|.    .+|.+...+....+..|+.++|.|.+.+..| .+.+.|+++|+.+..
T Consensus        86 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           86 GSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             EEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            9999766 234456677777    4555554444444457999999999964443 689999999999865

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=2.2e-16  Score=99.54  Aligned_cols=94  Identities=19%  Similarity=0.297  Sum_probs=74.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+....   +..+.            .......+|.|.++
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~---~~~~~------------~~~~~~~~L~i~~v   69 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD---RIYWY------------WPEDNVCELVIRDV   69 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS---SEEEE------------EEETTEEEEEECSC
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCC---CEEEE------------EcCCCEEEEEECCC
Confidence            6888888999999999999999999999999999999998876541   11110            00011336999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                       +.+|+|.|+|.+.|..|... ..+.|.|..
T Consensus        70 -~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~   98 (99)
T 1g1c_A           70 -TGEDSASIMVKAINIAGETS-SHAFLLVQA   98 (99)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             -CcCCCEEEEEEEEECCCcEE-EEEEEEEec
Confidence             99999999999999988776 677777764

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.69  E-value=1.9e-16  Score=111.64  Aligned_cols=113  Identities=22%  Similarity=0.387  Sum_probs=80.9

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEe-cccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN-VQKDHDRGVYWCTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  201 (258)
                      ....|+.+.|.|.+.+ +. .+.|++++..+...      .+++|.|.+ +.. +|+|.|+|.|.|..+. .+..+.+.|
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------~~~~L~I~~~~~~-~D~G~Y~C~a~n~~g~-~~~~~~~~v   79 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK------HDKHLVLQDFSEV-EDSGYYVCYTPASNKN-TYLYLKARV   79 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC------CCSEEEEESCCTT-TSCEEEEEECSSCCCC-CCEEECCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC------CCCEEEECCCCcc-ccCEEEEEEEEeCCCc-EEEEEEEEE
Confidence            4568999999999987 43 49999999887643      346799999 887 9999999999998774 333333333


Q ss_pred             ec--CCc----------------cccCCC----C---CccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        202 TV--PPK----------------IAPFEF----Q---PDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       202 ~~--~p~----------------~~~~~~----~---~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      ..  ++.                +.....    .   ..+..|+.+.|.|.+    |.+.|.|++||+.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~  148 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPL  148 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----SCSCEEEEETTEECCCS
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC----CCCeEEEEECCEECccc
Confidence            22  111                000000    0   134489999999998    67899999999998743

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.68  E-value=5.5e-17  Score=121.33  Aligned_cols=160  Identities=19%  Similarity=0.265  Sum_probs=88.1

Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------  154 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------  154 (258)
                      ++.|.+.|.|.+.+..+... ....+.|.     ..+..+.+.+|+.++|.|.+.+ +.+.+.|++..  ....      
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~-~~~~~~v~-----~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~   76 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSG-GGGGMKVI-----QTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQ   76 (270)
T ss_dssp             -------------------------CCCE-----EECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEE
T ss_pred             hhhhHHHHHHHHhccCCccc-cccceeEE-----eCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEEC
Confidence            56799999999988765443 22222222     2234567889999999999865 66799999832  1110      


Q ss_pred             C------C---c-ceEEec----CCeEEEEecccCCCCcEEEEEEEeCCC---CCccceEEEEeec------CCccccC-
Q psy14532        155 L------N---R-RQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTV------PPKIAPF-  210 (258)
Q Consensus       155 ~------~---~-~~~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~-  210 (258)
                      .      .   . ++.+..    +.+|.|.+++. +|+|.|.|.+.+...   ........|.|..      +|.+... 
T Consensus        77 ~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~  155 (270)
T 3qib_D           77 NQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEA-GDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFE  155 (270)
T ss_dssp             TTEEEEECHHHHHHEEEECCTTSCEEEEESSCCG-GGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEE
T ss_pred             CCCceecCCccCCcEEEEeCCCcEEEEEECCCCH-hHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEEC
Confidence            0      0   0 333322    34799999998 999999999986431   1123445666665      3333322 


Q ss_pred             CCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccccc
Q psy14532        211 EFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSAM  250 (258)
Q Consensus       211 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~~  250 (258)
                      +....+..|+.++|.|.+.+..|.+ .+.|+++|+.+..+.
T Consensus       156 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  196 (270)
T 3qib_D          156 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV  196 (270)
T ss_dssp             CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             CCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCc
Confidence            2222345599999999996547766 899999999997643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.68  E-value=2.1e-18  Score=133.66  Aligned_cols=154  Identities=20%  Similarity=0.287  Sum_probs=110.9

Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-ceEEec
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-RQKVFP  163 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~  163 (258)
                      +.|.|+|.+.+...     .+.+.+..+|.+ ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ......
T Consensus       136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  210 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP  210 (347)
T ss_dssp             GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSS
T ss_pred             cccCCCCCCChHHh-----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecc
Confidence            56889998765221     111122223332 23456678899999999999999999999999887643221 112234


Q ss_pred             CCeEEEEecccCCCCc-EEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEEC
Q psy14532        164 NGTLLIENVQKDHDRG-VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN  242 (258)
Q Consensus       164 ~~~l~i~~~~~~~~~g-~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  242 (258)
                      .+.|.|.++.. +|+| .|+|.+.+..+. .+..+.|.|..+|.+    .......|+.+.|.|.+ .|.|.+.|.|+++
T Consensus       211 ~~~L~i~~v~~-~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~  283 (347)
T 2ifg_A          211 SLGLTLANVTS-DLNRKNVTCWAENDVGR-AEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSV-DGQPAPSLRWLFN  283 (347)
T ss_dssp             EEEEEEESCCS-TTTTCCEEECCEETTEE-CCEEECCCCBEEEEE----EECCCEESSSEEEEEEE-EEESCCEEEEEET
T ss_pred             cceEEEeeCCh-HHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCee----eeccCccCceEEEEEEe-eecCCCcEEEEeC
Confidence            56799999997 9999 999999998774 356667777777764    12234578999999999 5889999999999


Q ss_pred             CEecccccc
Q psy14532        243 GLPILSAMG  251 (258)
Q Consensus       243 g~~l~~~~~  251 (258)
                      |+.+..+..
T Consensus       284 g~~l~~~~~  292 (347)
T 2ifg_A          284 GSVLNETSF  292 (347)
T ss_dssp             TEECCCCSS
T ss_pred             CEECCCCcc
Confidence            999986543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.68  E-value=5.9e-16  Score=100.38  Aligned_cols=98  Identities=28%  Similarity=0.441  Sum_probs=76.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+....  .++.+...            .....+|.|.++
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~--~~~~~~~~------------~~~~~~L~I~~v   80 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT--DRISLYQD------------NTGRVTLLIKDV   80 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCB--TTEEEEEC------------TTCEEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCC--CeEEEEeC------------CCCeEEEEECCC
Confidence            6889999999999999999999999999999999999998776431  11111100            000127999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|..+|.
T Consensus        81 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~p~  112 (116)
T 2kkq_A           81 -NKKDAGWYTVSAVNEAGVTT-CNTRLDVTARPN  112 (116)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEECCSC
T ss_pred             -CcccCEEEEEEEEcCCCeEE-EEEEEEEeCCCC
Confidence             99999999999999988776 788888887654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.68  E-value=8.5e-16  Score=130.24  Aligned_cols=186  Identities=18%  Similarity=0.236  Sum_probs=123.6

Q ss_pred             cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC-ceEEEEE
Q psy14532         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD-RGVYWCT   93 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d-~G~Y~C~   93 (258)
                      ..+.++.|.|.+.|.|.+.+.|.++|..+...                         ..+.+.|..+ ...+ ++.|.|.
T Consensus        89 ~~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~-------------------------~~~~~~i~~~-~~~~~~l~~~~v  142 (731)
T 2v5y_A           89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTW-------------------------NRAELAISTF-WPNFYQVIFEVI  142 (731)
T ss_dssp             SCSEEEEEEEEETTCCCCSEEEEECCCCCSSC-------------------------EEEEEEECCC-TTSCEEEEEEEE
T ss_pred             CCcceEEEEEecCCCCccceeEEEeCCcCCce-------------------------eEEEEEEeec-CCCceEEEEEEE
Confidence            44568999999999999999999998765332                         0112333332 2222 3666776


Q ss_pred             EEeCCcceeeceEEEEEe---cCCeeccCCCcceecCCcEEEEeeeCcccCceEE-EE--eCCcccCCCcceEEec---C
Q psy14532         94 ATNKQGRSSSQNVHISVT---GAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESIT-WQ--KGVQQLPLNRRQKVFP---N  164 (258)
Q Consensus        94 ~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~-W~--~~~~~~~~~~~~~~~~---~  164 (258)
                      +.+..|......+.+.+.   .+|.+..+....+..|+.+.|.|.+.|.|.+.+. |+  +++..+.......+..   .
T Consensus       143 a~~~~G~~~~~~v~~~~~~~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~  222 (731)
T 2v5y_A          143 TSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI  222 (731)
T ss_dssp             ECSSCCEEEECCBEEESSCCSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEE
T ss_pred             ecCCceEEEEeeEEeeecccccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccce
Confidence            555555433233333322   3444445566788999999999999999988887 87  5676654332222211   2


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEe
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV  228 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~  228 (258)
                      +.|.|.++.. .|.|.|+|.|.|..|...+....|.|..+|.....+.... .....+.|.|..
T Consensus       223 ~~l~I~~~~~-~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~-~~~~~v~l~w~~  284 (731)
T 2v5y_A          223 ASFNVVNTTK-RDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLAS-VGATYLWIQLNA  284 (731)
T ss_dssp             EEEEECSCCT-TTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEE-ECSSCEEEECCC
T ss_pred             EEEEEccccc-ccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceec-cCCceEEEEeCC
Confidence            5799999997 9999999999999885466677888888877554443222 235678888876

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.3e-16  Score=102.73  Aligned_cols=94  Identities=30%  Similarity=0.477  Sum_probs=76.7

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+....  .+                .....+++|.|.+
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~--~~----------------~~~~~~~~L~i~~   68 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD--SR----------------IKQLENGVLQIRY   68 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTS--TT----------------EEEEETTEEEEES
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCC--Ce----------------EEEccCCEEEEcc
Confidence            37888888999999999999999999999999999999987765321  11                1223467899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      + +.+|+|.|+|.+.|..|... ..+.|.|...+
T Consensus        69 v-~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~  100 (118)
T 2eo9_A           69 A-KLGDTGRYTCIASTPSGEAT-WSAYIEVQEFG  100 (118)
T ss_dssp             C-CGGGCCCEEEEEECSSCEEE-EECCEEEECCS
T ss_pred             C-CcCCCEEEEEEEEcCCCcEE-EEEEEEEEeCC
Confidence            9 99999999999999988765 67778887664

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=5.6e-16  Score=109.03  Aligned_cols=110  Identities=18%  Similarity=0.362  Sum_probs=85.5

Q ss_pred             cceecCCcEEEEeeeCcccCc--eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      ..+.+|+.+.|.|.+.+.+.+  .+.|++++..+.......  ....|.|.  .. +|+|.|+|.+.+.    ....+.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~--~~~~l~i~--~~-~d~G~Y~C~~~n~----~~~~~~l   78 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG--QKTEFKVD--SD-DQWGEYSCVFLPE----PMGTANI   78 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC--SEEEEEEC--GG-GCCEEEEEEEEST----TSCEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC--CcEEEEEe--ch-hhCeEEEEEEECC----cCcEEEE
Confidence            456789999999999877666  999999988765443211  12234444  44 8999999999982    3367788


Q ss_pred             EeecCCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEE
Q psy14532        200 SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLK  241 (258)
Q Consensus       200 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~  241 (258)
                      .|..+|.+...+....+..|+.+.|.|.+ .+.| .+.+.|++
T Consensus        79 ~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~  120 (184)
T 3b5h_A           79 QLHGPPRVKAVKSSEHINEGETAMLVCKS-ESVPPVTDWAWYK  120 (184)
T ss_dssp             EECCSCCCEESCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEE
T ss_pred             EEecCCceeecCCCcEEcCCCcEEEEEEE-CCCCCCCeEEEEE
Confidence            89898988777666678899999999999 5777 79999999

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.68  E-value=1.5e-16  Score=116.53  Aligned_cols=130  Identities=17%  Similarity=0.275  Sum_probs=91.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--cc------------CCCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL------------PLNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~------------~~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++..  ..            ....++...   .+.+|.|.+++. +|+|.|
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y  109 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP-EDFATY  109 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh-hhCeEE
Confidence            445678899999999999888888999998431  11            112233332   234699999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEECCEecccc
Q psy14532        182 WCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSA  249 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~  249 (258)
                      +|.+.+..+........|.|..   +|.+...+....+..|+.++|.|.+.++.| .+.+.|+++|..+..+
T Consensus       110 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          110 YCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             EEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             EEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            9999886643334445566643   444433333334456889999999965566 6899999999998753

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.68  E-value=5.4e-16  Score=96.09  Aligned_cols=86  Identities=29%  Similarity=0.612  Sum_probs=73.0

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ++++|...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+...                         ..++|.|.+
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-------------------------~~~~L~i~~   56 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------------------------TKKLYMVPY   56 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-------------------------CSSEEEESS
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-------------------------CCCeEEECC
Confidence            3678888898999999999999999999999999999998876544                         134799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      + +..|+|.|+|.+.|..+...+..+.|.|..
T Consensus        57 v-~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           57 V-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             C-CGGGCEEEEEEEECSSCEEECCCEEEEEC-
T ss_pred             C-CHHhCEEEEEEEEcCCCCEEeeeEEEEEeh
Confidence            9 999999999999999887665777787754

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.68  E-value=8.4e-16  Score=118.51  Aligned_cols=189  Identities=18%  Similarity=0.275  Sum_probs=108.9

Q ss_pred             eceeeeecCCCceEEEEEEeecC--------------CCeEEEeeC--CE--eCcCCccccceecccceeecccccc---
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--------------TPHISWKLD--GY--PLAGDRHENKNRIGEARVQQLPLNR---   66 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--------------~~~v~W~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~---   66 (258)
                      .+..+.+.+|++++|.|.....+              ...+.||+.  ++  .+..+...........+.....+..   
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            44567789999999999986432              347999973  32  1211110000000000000000000   


Q ss_pred             c---eeeeeCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCC-Ccc-eecCC-cEEEEeeeCc-c
Q psy14532         67 R---QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVS-AIAGE-PLYLGCPVAG-Y  139 (258)
Q Consensus        67 ~---~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~-~~~g~-~~~l~C~~~~-~  139 (258)
                      .   .....+++|.|.++ +..|+|.|+|.+.+..+... ..+.|.|..+|.+.... ... +..|+ .++|.|.+.+ +
T Consensus       244 ~~~~g~~~g~~sL~I~~v-~~~D~G~Y~C~v~~~~~~~~-~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gfy  321 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRV-QPFQEGTYLATIHLPYLQGQ-VTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY  321 (401)
T ss_dssp             CCSSCCEEEEEEEEETTC-CGGGCEEEEEEEEETTEEEE-EEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEB
T ss_pred             cccccccCCcEEEEECcC-CHhhCceEEEEEEeccccee-EEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCc
Confidence            0   02335678999999 99999999999998766555 67788888877654422 222 34676 7999999988 4


Q ss_pred             cC--ceEEEE-eCCc---ccCCC-----cceEEecCCeEEEEe------cccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        140 PI--ESITWQ-KGVQ---QLPLN-----RRQKVFPNGTLLIEN------VQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       140 ~~--~~i~W~-~~~~---~~~~~-----~~~~~~~~~~l~i~~------~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      |.  +.+.|. +++.   .....     .......++++.+..      ...+++.+.|+|.+.|..-....+...
T Consensus       322 P~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~s  397 (401)
T 3f8u_B          322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAE  397 (401)
T ss_dssp             SSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEE
T ss_pred             CCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEE
Confidence            65  799995 7652   11111     112223455544432      211124569999999986433333333

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.67  E-value=8e-17  Score=115.65  Aligned_cols=125  Identities=13%  Similarity=0.206  Sum_probs=86.9

Q ss_pred             eecCCcEEEEeeeCccc----CceEEEEeCCcccCCCcc--------eEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        124 AIAGEPLYLGCPVAGYP----IESITWQKGVQQLPLNRR--------QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~~----~~~i~W~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +..|+.+.|.|.+.+.+    ...+.|++++..+.....        ........|.|.++.. +|+|.|+|.+.+..+.
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW-LNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHH-HTTCCEEEEEECTTCS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHc-CCCCEEEEEEEccCCC
Confidence            78999999999998874    248999998866542210        0111224688888887 9999999999998763


Q ss_pred             Cc-cceEEE--EeecCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        192 SS-SQNVHI--SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       192 ~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      .. ...+.+  .+..+|.+...+.......|+.+.|.|.+.+.+|+ +.+.|++||+.+...
T Consensus        94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  155 (207)
T 2vol_A           94 APIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENY  155 (207)
T ss_dssp             SCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE
T ss_pred             CceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCc
Confidence            21 122322  34556666554433333469999999999654666 599999999988654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.67  E-value=2.3e-16  Score=114.07  Aligned_cols=127  Identities=21%  Similarity=0.362  Sum_probs=88.8

Q ss_pred             CcceecCCcEEEEeeeCcc-cCceEEEEeCC--cccC----------------CCcceEEe---cCCeEEEEecccCCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAGY-PIESITWQKGV--QQLP----------------LNRRQKVF---PNGTLLIENVQKDHDR  178 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~--~~~~----------------~~~~~~~~---~~~~l~i~~~~~~~~~  178 (258)
                      ...+.+|+.+.|.|.+.+. +.+.+.|++..  ....                ...++.+.   .+.+|.|.+++. +|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~   87 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQP-EDE   87 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCG-GGC
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCc-ccC
Confidence            5678899999999999988 88899999832  1110                01122221   223599999997 999


Q ss_pred             cEEEEEEEeCCC----CCccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccc
Q psy14532        179 GVYWCTATNKQG----RSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILS  248 (258)
Q Consensus       179 g~y~C~~~~~~~----~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~  248 (258)
                      |.|.|.+.+..+    ......+.|.|..    +|.+...+....+..|+.++|.|.+.++.|.+ .|.|+++|..+..
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  166 (218)
T 3s96_B           88 AIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQ  166 (218)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--
T ss_pred             EEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcC
Confidence            999999998764    1234456777774    44444333344455679999999996546766 9999999999976

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.67  E-value=8.4e-16  Score=106.78  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=102.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeC-CE-eC-cCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLD-GY-PL-AGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +...|.+..|.+|+++.|+|.+.. +.+ .+.|... ++ .+ ...                        .....|.|.+
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~------------------------~~~~~l~l~~   56 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG------------------------NNRKVYELSN   56 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS------------------------SSEEEEEEEE
T ss_pred             eEEECCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC------------------------CceeEEEEEe
Confidence            456778888999999999999864 444 4777631 11 11 000                        0113578999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCc-ccCc--eEEEEeCCcccCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAG-YPIE--SITWQKGVQQLPL  155 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~--~i~W~~~~~~~~~  155 (258)
                      + +. | |.|.|.+..... .....+.|.|+.+|....  +....+.+|+.++|.|.+.+ .|..  .|+|++++..+..
T Consensus        57 v-s~-~-g~y~C~~~c~~~-~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~  132 (185)
T 1iam_A           57 V-QE-D-SQPMCYSNCPDG-QSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR  132 (185)
T ss_dssp             E-CS-C-BCCEEEEECSSC-EEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             c-Cc-C-CEEEEEEECCCC-ceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccc
Confidence            9 63 4 999999865544 444888999987764332  23345889999999999977 5654  5899999887643


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ........+.++.+... +++|+..|+|+|.+..+
T Consensus       133 ~~~~~~~~~~tl~~~~~-reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          133 EPAVGEPAEVTTTVLVR-RDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EECCTTTEEEEEEEECC-SSCSSCEEEEEEEEECG
T ss_pred             ccCCCccccEEEEEece-eccCCCeEEEEEEecCc
Confidence            22100011124555544 43555599999998875

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.67  E-value=5.2e-16  Score=98.52  Aligned_cols=94  Identities=22%  Similarity=0.342  Sum_probs=75.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+....   ++.+.             ......+|.|.++
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~---~~~~~-------------~~~~~~~L~i~~~   71 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS---KIHYT-------------NTSGVLTLEILDC   71 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCS---SEEEE-------------EETTEEEEEECSC
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC---CEEEE-------------ECCCEEEEEEcCC
Confidence            6788888899999999999999999999999999999998876541   22111             0001236999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                       ..+|+|.|+|.+.|..|... ..+.|.|...
T Consensus        72 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~  101 (103)
T 3qp3_A           72 -HTDDSGTYRAVCTNYKGEAS-DYATLDVTGG  101 (103)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred             -CcccCEEEEEEEEeCCCcEE-EEEEEEEECC
Confidence             99999999999999988776 7778887654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.67  E-value=2.7e-16  Score=116.06  Aligned_cols=127  Identities=20%  Similarity=0.314  Sum_probs=92.7

Q ss_pred             CCcceecCCcEEEEeeeCc---ccCceEEEEeCCcccC------------------------------CCcceEEec--C
Q psy14532        120 GNVSAIAGEPLYLGCPVAG---YPIESITWQKGVQQLP------------------------------LNRRQKVFP--N  164 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~---~~~~~i~W~~~~~~~~------------------------------~~~~~~~~~--~  164 (258)
                      ..+.+.+|+.+.|.|.+.+   .+.+.+.|++++....                              ...+..+..  +
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   89 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAA   89 (250)
T ss_dssp             SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTS
T ss_pred             CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCc
Confidence            4567889999999999876   6788999999775421                              111222222  3


Q ss_pred             CeEEEEecccCCCCcEEEEEEEeCCCCCc----cceEEEEeecCC---ccccC-CCCCccCCCCeeeEEEEeccCCCCce
Q psy14532        165 GTLLIENVQKDHDRGVYWCTATNKQGRSS----SQNVHISVTVPP---KIAPF-EFQPDLHSGDRAGVQCLVTKGDPPLT  236 (258)
Q Consensus       165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p---~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~  236 (258)
                      ..|.|.+++. +|+|.|+|.+.+..+...    +..+.|.|..++   .+... +....+.+|+.+.|.|.+ .+.|.+.
T Consensus        90 ~~L~I~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~g~p~p~  167 (250)
T 2fbo_J           90 PTLRLTHVHP-QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANAN  167 (250)
T ss_dssp             CCEEECSCCG-GGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE-ESCTTCE
T ss_pred             ceEEEeeCCh-hhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe-cCCCCCe
Confidence            5799999998 999999999998765332    346778877652   22221 223456779999999999 5878889


Q ss_pred             eEEEECCEeccc
Q psy14532        237 ISWLKNGLPILS  248 (258)
Q Consensus       237 ~~W~~~g~~l~~  248 (258)
                      |.|++++..+..
T Consensus       168 v~W~k~~~~~~~  179 (250)
T 2fbo_J          168 VTWYTGPTFFEN  179 (250)
T ss_dssp             EEEEEEEECSSC
T ss_pred             eEEEeCCCcccc
Confidence            999999988865

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.67  E-value=1.5e-16  Score=115.13  Aligned_cols=124  Identities=17%  Similarity=0.228  Sum_probs=86.0

Q ss_pred             eecCCcEEEEeeeCcc---cC-ceEEEEeCCcccCCCcce--------EEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        124 AIAGEPLYLGCPVAGY---PI-ESITWQKGVQQLPLNRRQ--------KVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~---~~-~~i~W~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.+|+.++|.|.+.+.   |. +.|.|++++..+......        .....+.|.|.++.. +|+|.|+|.+.+..+.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW-MSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHH-HTTCCEEEEEEETTCS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHc-CCCCeEEEEEECCcCC
Confidence            7789999999999876   33 799999998765432110        111234688888887 9999999999998653


Q ss_pred             C-ccceEEE--EeecCCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEeccc
Q psy14532        192 S-SSQNVHI--SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILS  248 (258)
Q Consensus       192 ~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~  248 (258)
                      . ....+.+  .+..+|.+...+.......|+.++|.|.+.+.+|.+ .|.|+++|..+..
T Consensus       102 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  162 (218)
T 2rgs_A          102 SPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN  162 (218)
T ss_dssp             SCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             CcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccC
Confidence            2 1222211  344566655444333334699999999996446765 9999999998854

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.67  E-value=2.6e-16  Score=111.25  Aligned_cols=120  Identities=14%  Similarity=0.188  Sum_probs=87.3

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCC-CCccceEEE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHI  199 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l  199 (258)
                      .+.+|++++|.|.+.+ +.+.+.|++++..+....  ......++.|.|.+++. +|+|.|+|.+.+..+ ...+..+.|
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~~~~~~~~~s~~~~l   91 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNS-RMAGQYSCIYRVGELWSEPSNLLDL   91 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCG-GGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCc-ccCeEEEEEecCCCCCCCCCCceEE
Confidence            6889999999999875 346899999987653210  01112345799999997 999999999988643 233566777


Q ss_pred             Eeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecc
Q psy14532        200 SVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  247 (258)
Q Consensus       200 ~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~  247 (258)
                      .|..   +|.+...+ ...+.+|+.++|.|.+ .+ +.+.|.|+++|..+.
T Consensus        92 ~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~  139 (188)
T 1oll_A           92 VVTEMYDTPTLSVHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSH  139 (188)
T ss_dssp             EEESCSCCCEEEEES-CSEEETTCEEEEEEEC-SS-SCSEEEEEEESSSCE
T ss_pred             EecccCCCCeEEECC-CCccccCCEEEEEEEc-CC-CCCEEEEEECCcccc
Confidence            7764   44444333 3567899999999998 34 456899999998765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.67  E-value=4e-16  Score=109.30  Aligned_cols=119  Identities=17%  Similarity=0.326  Sum_probs=88.4

Q ss_pred             CcceecCCcEEEEeeeC--cccCceEEEEe--CCccc----------CCCcceEEecCCeEEEEecccCCCCcEEEEEEE
Q psy14532        121 NVSAIAGEPLYLGCPVA--GYPIESITWQK--GVQQL----------PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~--~~~~~~i~W~~--~~~~~----------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      .+....|++++|.|...  +.+.+.|.|++  ++..+          ....+..+..+++|.|.+++. +|+|.|+|.+.
T Consensus         8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~-~DsG~Y~c~~~   86 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKT-DDQDIYKVSIY   86 (182)
T ss_dssp             EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCG-GGCEEEEEEEE
T ss_pred             EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCCh-hhCEEEEEEEE
Confidence            35677899999999543  34567999999  77655          245667777889999999998 99999999999


Q ss_pred             eCCCCCc-cceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEec
Q psy14532        187 NKQGRSS-SQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  246 (258)
Q Consensus       187 ~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l  246 (258)
                      +..+... ...+.|.|..+...+..     ...+..+.|.|.+ .+.|.+.|.|+++|+.+
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~~P~i-----~~~~~~v~L~C~~-~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVSKPKI-----SWTCINTTLTCEV-MNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCCCCEE-----EEETTTTEEEEEC-SSCSSCEEEEEESSCEE
T ss_pred             eCCCceeEEEEEEEEEcCcCCCCEE-----EEccCcEEEEeEc-cCCCCCEEEEEECCEEC
Confidence            9876432 35567777754221111     0123479999999 57778999999999988

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.67  E-value=7.7e-16  Score=96.98  Aligned_cols=94  Identities=23%  Similarity=0.386  Sum_probs=73.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+.....  ++....             .....+|.|.++
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~--~~~~~~-------------~~~~~~L~i~~~   69 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR--RFAEEA-------------EGGLCRLRILAA   69 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTT--EEEEEC-------------GGGEEEEEESSC
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCC--EEEEEC-------------CCCEEEEEEccC
Confidence            68888888899999999999999999999999999999987764411  111100             001126999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|..
T Consensus        70 -~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~   98 (99)
T 1u2h_A           70 -ERGDAGFYTCKAVNEYGARQ-CEARLEVRG   98 (99)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             -CcCCCEEEEEEEEECCCcee-EEEEEEEEC
Confidence             99999999999999988776 677777753

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.66  E-value=3.6e-16  Score=112.96  Aligned_cols=130  Identities=17%  Similarity=0.253  Sum_probs=87.7

Q ss_pred             CCCcceecCCcEEEEeee-Cccc-CceEEEEeCCc--ccC------------CCcceEEec---CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPV-AGYP-IESITWQKGVQ--QLP------------LNRRQKVFP---NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~-~~~~-~~~i~W~~~~~--~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g  179 (258)
                      +....+.+|+.+.|.|.+ .+.+ .+.+.|++++.  .+.            ...++.+..   ...|.|.+++. +|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQT-GDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCG-GGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCc-ccCE
Confidence            345678899999999995 4443 57999999542  210            122333322   23799999998 9999


Q ss_pred             EEEEEEEeCCC-CCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecccc
Q psy14532        180 VYWCTATNKQG-RSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       180 ~y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      .|.|.+.+..+ ........|.|..   +|.+...+.......|+.++|.|.+.++.|.+ .|.|+++|+.+..+
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~  160 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  160 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCC
Confidence            99999998764 1223344566653   44444333222334688999999996546664 99999999998765

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=9.7e-17  Score=115.60  Aligned_cols=130  Identities=22%  Similarity=0.393  Sum_probs=89.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|+.++|.|.+.+.+.+.+.|+++.  ..+.            ...++.+..   ...|.|.++.. +|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQP-EDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCSEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCc-ccCEEE
Confidence            34567889999999999988877789999853  2221            123333322   23799999997 999999


Q ss_pred             EEEEEeCCCC--CccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        182 WCTATNKQGR--SSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       182 ~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      +|.+.+....  .......|.|.    .+|.+...+....+..|+.++|.|.+.+..|+ +.|.|+++|+.+..+
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            9999973221  11233456663    34444443333345579999999999644465 899999999998765

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.66  E-value=2.6e-16  Score=97.96  Aligned_cols=89  Identities=18%  Similarity=0.298  Sum_probs=71.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ||.|...+.++.+.+|+.+.|.|.+.|.|.+.+.|+|++  ..+....   ....               .....+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~---~~~~---------------~~~~~~L~i~   63 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL---LVDA---------------KSSTTSIFFP   63 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS---EEEE---------------ETTEEEEECT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE---EEEe---------------cCCEEEEEEC
Confidence            788888888999999999999999999999999999998  7664331   1100               0123569999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ++ ...|+|.|+|.+.|..|... ..+.|.|
T Consensus        64 ~~-~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   92 (93)
T 1wit_A           64 SA-KRADSGNYKLKVKNELGEDE-AIFEVIV   92 (93)
T ss_dssp             TB-CGGGCEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             CC-ChhcCEEEEEEEEcCCCeEE-EEEEEEE
Confidence            99 99999999999999998766 7777765

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.66  E-value=2.7e-15  Score=105.05  Aligned_cols=159  Identities=16%  Similarity=0.084  Sum_probs=103.0

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCC--EeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      -++...|.+..+.+|+++.|+|.+.. +.+ .+.|...-  ..+..         +               .....+.|.
T Consensus         3 f~v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~---------g---------------~~~~~~~ls   57 (196)
T 3bn3_B            3 FWADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGTQR---------G---------------LRWLARQLV   57 (196)
T ss_dssp             SCEEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSEEEEEEE---------E---------------TTEEEEEEE
T ss_pred             cEEEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccCCeeEcc---------c---------------cCceEEEEE
Confidence            35667888889999999999999864 444 67776421  11100         0               001137889


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc--CCCcceecCCcEEEEeeeCc-ccCce--EEEEeCCcccC
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP--MGNVSAIAGEPLYLGCPVAG-YPIES--ITWQKGVQQLP  154 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~~--i~W~~~~~~~~  154 (258)
                      ++ + +|.+.|.|.+....... ...+.|.|+..|....  .....+.+|+.++|.|.+.+ +|...  |+|++++..+.
T Consensus        58 ~v-s-~d~~~~~C~~~c~~~~~-~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~  134 (196)
T 3bn3_B           58 DI-R-EPETQPVCFFRCARRTL-QARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI  134 (196)
T ss_dssp             EE-C-SSEECCEEEEEETTEEE-EEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEE
T ss_pred             EE-c-cCCCceEEEEECCCCce-EEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEee
Confidence            99 7 78888999976654333 4888999988764332  22234889999999999977 56544  89999987764


Q ss_pred             CCcceEEecC-----CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        155 LNRRQKVFPN-----GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       155 ~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..........     ..+.+... +++++..|+|+|.+..+
T Consensus       135 ~~~~~~~~~~~~~~t~~~~~~~~-r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          135 RRSFAGEPPRARGAVLTATVLAR-REDHGANFSCRAELDLR  174 (196)
T ss_dssp             EEECTTSCTTCCCEEEEEEEECC-GGGTTCEEEEEEEEECG
T ss_pred             ccccccccccccceeEEEEEeee-eccCCCeEEEEEEccCC
Confidence            2210000011     23444443 43555599999998765

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.66  E-value=3.2e-16  Score=115.96  Aligned_cols=130  Identities=17%  Similarity=0.254  Sum_probs=90.0

Q ss_pred             CCCcceecCCcEEEEeeeCccc-----CceEEEEeCCc--cc------------CCCcceEEecC---CeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-----IESITWQKGVQ--QL------------PLNRRQKVFPN---GTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~i~W~~~~~--~~------------~~~~~~~~~~~---~~l~i~~~~~~~  176 (258)
                      +....+.+|+.++|.|.+.+.+     .+.+.|++++.  ..            ....++.+...   .+|.|.+++. +
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~  119 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEA-E  119 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-G
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCc-c
Confidence            4456788999999999998876     58999999542  11            01223333322   2799999997 9


Q ss_pred             CCcEEEEEEEeCCCCCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        177 DRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       177 ~~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      |+|.|.|.+.+..+........|.|..   +|.+...+....+..|+.++|.|.+.+.+|. +.|.|+++|+.+..+
T Consensus       120 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  196 (252)
T 3bkj_L          120 DLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  196 (252)
T ss_dssp             GCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             cCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCC
Confidence            999999999887543223345566654   3444433333334468999999999654665 489999999988765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.66  E-value=5.3e-16  Score=112.32  Aligned_cols=127  Identities=23%  Similarity=0.416  Sum_probs=88.9

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~  172 (258)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+++.  ..+.                 ...++.+..     ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            3456788999999999998754  6799999963  3221                 112333322     247999999


Q ss_pred             ccCCCCcEEEEEEEeCCCC---CccceEEEEeecC----CccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCE
Q psy14532        173 QKDHDRGVYWCTATNKQGR---SSSQNVHISVTVP----PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGL  244 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~  244 (258)
                      +. +|+|.|.|.+.+..+.   .....+.|.|...    |.+...+....+..|+.+.|.|.+.++.|.+ .|.|+++|.
T Consensus        87 ~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  165 (219)
T 1c1e_H           87 KN-EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (219)
T ss_dssp             CG-GGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             Cc-ccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence            98 9999999999987531   1223456677653    3333223234567899999999995448888 999999998


Q ss_pred             ec
Q psy14532        245 PI  246 (258)
Q Consensus       245 ~l  246 (258)
                      .+
T Consensus       166 ~~  167 (219)
T 1c1e_H          166 SS  167 (219)
T ss_dssp             CT
T ss_pred             cc
Confidence            75

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.66  E-value=2.6e-16  Score=100.32  Aligned_cols=87  Identities=33%  Similarity=0.538  Sum_probs=71.2

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ..+....+.+|+.+.|.|.+.|.|.+.|.|++++..+....++.+..++   +|.|.++.. +|+|.|+|.|.|..|. .
T Consensus        18 ~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~   95 (107)
T 3knb_B           18 RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGE-A   95 (107)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCG-GGCEEEEEEEEETTEE-E
T ss_pred             eCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCCh-hhCEEEEEEEEECCCE-E
Confidence            3456678899999999999999999999999999998877766654433   699999997 9999999999999884 4


Q ss_pred             cceEEEEeecCC
Q psy14532        194 SQNVHISVTVPP  205 (258)
Q Consensus       194 ~~~~~l~v~~~p  205 (258)
                      +..+.|.|..+|
T Consensus        96 ~~~~~l~V~~pP  107 (107)
T 3knb_B           96 YAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEEEEEC--
T ss_pred             EEEEEEEEEcCC
Confidence            567788887665

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.65  E-value=5.8e-17  Score=118.52  Aligned_cols=130  Identities=15%  Similarity=0.271  Sum_probs=71.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--cc------------CCCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL------------PLNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~------------~~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|+++.|.|.+.+.+.+.+.|++++.  ..            ....++...   .+.+|.|.+++. +|+|.|
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y  108 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS-EDVADY  108 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C-CCCSEE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH-HHCEEE
Confidence            455678899999999999887778899998532  11            001122211   122699999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecccc
Q psy14532        182 WCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSA  249 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~~~  249 (258)
                      .|.+.+..+........|.|..   +|.+...+....+..|+.++|.|.+.+.+|++ .+.|+++|+.+..+
T Consensus       109 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          109 YCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             EEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             EEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            9999887543323333445543   44444433333344699999999996445654 89999999988765

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=109.98  Aligned_cols=131  Identities=20%  Similarity=0.291  Sum_probs=93.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc---eEEEEeCCcccCCCc------------------ceEE------ecCCeEEEEe
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE---SITWQKGVQQLPLNR------------------RQKV------FPNGTLLIEN  171 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~---~i~W~~~~~~~~~~~------------------~~~~------~~~~~l~i~~  171 (258)
                      +..+.+..|+.+.|.|.+.+.+.+   .|.|++++.......                  +...      ..+.+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            455778899999999999887654   589999775543211                  1111      1234699999


Q ss_pred             cccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcccc-CCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP-FEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       172 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      ++. +|+|.|.|.+.+..+........+.+..++.... ......+..|+.+.+.|.+ .+.|++.|.|++++..+....
T Consensus        86 v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           86 AVQ-ADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA-EGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             CCG-GGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE-EEBSCCEEEEEESSCCEEEEE
T ss_pred             ccH-HHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeec-cCCcCceEEEEECCcccccCc
Confidence            997 9999999999887654444444455554443332 2334567789999999999 688999999999998887654


Q ss_pred             c
Q psy14532        251 G  251 (258)
Q Consensus       251 ~  251 (258)
                      .
T Consensus       164 ~  164 (218)
T 4frw_A          164 S  164 (218)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.65  E-value=7.1e-16  Score=96.33  Aligned_cols=86  Identities=21%  Similarity=0.416  Sum_probs=70.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|+++.|.|.+.+.| +.+.|+|++..+...   .++.+                 .+++|.|.++
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~---~~~~~-----------------~~~~L~i~~~   67 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES---NRTRI-----------------TGEEVEVRDS   67 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC---SSEEE-----------------CSSEEEESSC
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC---CCEEE-----------------eCCEEEECCC
Confidence            67888888899999999999999999887 799999998776543   11111                 2568999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|
T Consensus        68 -~~~D~G~Y~C~a~n~~g~~~-~~~~l~V   94 (95)
T 2ckn_A           68 -IPADSGLYACVTSSPSGSDT-TYFSVNV   94 (95)
T ss_dssp             -CGGGSEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             -ChHHCEEEEEEeccCCCcEE-EEEEEEE
Confidence             99999999999999888765 6666665

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=4.8e-16  Score=97.87  Aligned_cols=92  Identities=18%  Similarity=0.304  Sum_probs=71.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.++.+.+|+++.|.|.+  .|.+.+.|+|+|..+...   .++.+..             .....+|.|.++
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~---~r~~i~~-------------~~~~~~L~I~~v   68 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES---DRLKVVQ-------------KGRIHKLVIANA   68 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC---SSEEEEE-------------CSSEEEEEESSC
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC---CcEEEEE-------------eCCEEEEEECCC
Confidence            6888899999999999999999999  678899999999988654   2222210             001236999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       ..+|+|.|+|.+.|.  ... ..+.|.|..+|.
T Consensus        69 -~~~D~G~Y~C~a~N~--~~~-~~a~L~V~~~P~   98 (100)
T 2yuz_A           69 -LTEDEGDYVFAPDAY--NVT-LPAKVHVISGPS   98 (100)
T ss_dssp             -CGGGCSEEEEEESSS--CCC-EEEEEEEECCSC
T ss_pred             -ChhhCEEEEEEEcCC--Cee-EEEEEEEeCCCC
Confidence             999999999999987  223 677888887653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.65  E-value=1.3e-15  Score=110.47  Aligned_cols=127  Identities=16%  Similarity=0.293  Sum_probs=90.5

Q ss_pred             CCCcceecCCcEEEEeeeCccc-----CceEEEEeCCccc---------------CCCcceEEec------CCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-----IESITWQKGVQQL---------------PLNRRQKVFP------NGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~i~W~~~~~~~---------------~~~~~~~~~~------~~~l~i~~~  172 (258)
                      ...+.+..|+.+.|.|.+.+.|     ...+.|++++..+               ....+..+..      +.+|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            3445788999999999987655     3489999964211               0112222222      237999999


Q ss_pred             ccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEEC-CEecccc
Q psy14532        173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSA  249 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~l~~~  249 (258)
                      +. +|+|.|+|.+.+ .+ .....+.|.|..++..........+..|+.+.|.|.+ .+.|.+.+.|+++ |..+...
T Consensus        88 ~~-~D~G~Y~C~~~~-~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g~~~~~~  161 (222)
T 3sbw_C           88 KL-QDAGVYRCMISY-GG-ADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA-EGYPKAEVIWTSSDHQVLSGK  161 (222)
T ss_dssp             CG-GGCEEEEEEEES-SS-EEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE-EEBSCCEEEEEETTCCEECCE
T ss_pred             cc-ccCeEEEEEEEe-CC-CceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe-cCCCCCeEEEEECCCceecCc
Confidence            97 999999999998 33 3456677888876654433322356789999999999 5799999999998 6666543

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.65  E-value=4.8e-15  Score=110.52  Aligned_cols=175  Identities=15%  Similarity=0.282  Sum_probs=100.3

Q ss_pred             eceeeeecCCCceEEEEEEee--cCCCeEEEeeCC--EeCcCCccccceec-ccceeeccccccceeeee-----CCcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YPLAGDRHENKNRI-GEARVQQLPLNRRQKVFP-----NGTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~l~   77 (258)
                      .+..+.+.+|++|+|.|.+.+  .....+.|||..  .....-   ..... +........+..|.....     +.+|.
T Consensus        29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l---~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  105 (267)
T 3u1s_H           29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWM---GWMSHEGDKTGLAQKFQGRVTITRDSGASTVYME  105 (267)
T ss_dssp             ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEE---EEECTTSSCEEECGGGTTTEEEEECGGGCCEEEE
T ss_pred             eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEE---EEEeCCCCceecCcccCCcEEEEEcCCCCEEEEE
Confidence            334577899999999999865  235689999842  111000   00000 000111122223333332     23599


Q ss_pred             EeecccCCCceEEEEEEEe-------CC------------c-c----eeeceEEEEEec----CCeec-cCCCcceecCC
Q psy14532         78 IENVQKDHDRGVYWCTATN-------KQ------------G-R----SSSQNVHISVTG----APFVR-PMGNVSAIAGE  128 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~-------~~------------~-~----~~~~~~~l~v~~----~~~~~-~~~~~~~~~g~  128 (258)
                      |.++ +.+|+|.|.|.+.+       ..            . .    .......|.|..    +|.+. ..+......|+
T Consensus       106 I~~v-~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~  184 (267)
T 3u1s_H          106 LRGL-TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGG  184 (267)
T ss_dssp             ECSC-CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETT
T ss_pred             ECCC-ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCC
Confidence            9999 99999999999962       10            0 0    111344666652    23222 12333346789


Q ss_pred             cEEEEeeeCc-cc-CceEEEEeCCcccCCCcc---eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        129 PLYLGCPVAG-YP-IESITWQKGVQQLPLNRR---QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       129 ~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~---~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+.|.|.+.+ .| .+.+.|  ++..+.....   .....+      ..|.|..... +| +.|+|.+.+...
T Consensus       185 ~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~-~~-~~ytC~v~h~~~  253 (267)
T 3u1s_H          185 TAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTYICNVNHKPS  253 (267)
T ss_dssp             EEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GT-CCCEEEEEEGGG
T ss_pred             cEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhc-CC-CEEEEEEEECCC
Confidence            9999999977 45 468999  5554432110   111122      2477777665 67 999999999753

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.65  E-value=2e-15  Score=111.67  Aligned_cols=132  Identities=12%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             cCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce----EEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ----KVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      .+|.+...+...+.+|++++|.|.+.+ +.+.+.|+|++..+......    ....++.|.|.+++. +|+|.|+|.+.+
T Consensus         6 ~kP~i~~~P~~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPGPLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQ-DLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSCSEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCT-TTCEEEEEEEEC
T ss_pred             CCCEEEEcCCCEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCc-ccCEEEEEeEec
Confidence            345555444467889999999999874 46789999998765321110    011345799999997 999999999986


Q ss_pred             CC----CCCccceEEEEeecC---CccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccc
Q psy14532        188 KQ----GRSSSQNVHISVTVP---PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  248 (258)
Q Consensus       188 ~~----~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~  248 (258)
                      ..    ....+..+.|.|...   |.+...+. ..+.+|+.++|.|.+ .+.+ +.|.|+|+|+.+..
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~-~~~~-~~~~w~k~g~~~~~  148 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSS-RSSY-DMYHLSREGEAHER  148 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEEC-SSCC-SEEEEEETTSSCEE
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeC-CCCC-cEEEEEECCcccCc
Confidence            43    123466777887653   44433332 468899999999999 4544 68999999988764

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=7.5e-16  Score=99.02  Aligned_cols=96  Identities=27%  Similarity=0.380  Sum_probs=75.5

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC--CcEEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN--GTLLI   78 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i   78 (258)
                      .+|.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+....  .++.+.              ...+  .+|.|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~--~~~~~~--------------~~~~~~~~L~i   70 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS--DHYTIQ--------------RDLDGTCSLHT   70 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTC--SSEEEE--------------ECTTCEEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC--CeEEEE--------------ECCCcEEEEEE
Confidence            37888888899999999999999999999999999999988775431  111111              0012  26999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      .++ +..|+|.|+|.+.|..|... ..+.|.|..++
T Consensus        71 ~~v-~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~~  104 (110)
T 2dm2_A           71 TAS-TLDDDGNYTIMAANPQGRIS-CTGRLMVQAVN  104 (110)
T ss_dssp             SSC-CTTTCSCCEEEEECTTCCEE-ECCCEEEECCS
T ss_pred             CCC-ChhhCEEEEEEEEECCCeEE-EEEEEEEECCC
Confidence            999 99999999999999988776 77778887654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=5.1e-16  Score=97.80  Aligned_cols=88  Identities=27%  Similarity=0.484  Sum_probs=70.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+....   ..                ......+|.|.++
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~---~~----------------~~~~~~~L~i~~v   71 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR---ST----------------CEAGVAELHIQDA   71 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCC---CE----------------EETTEEEEEECSC
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccc---eE----------------eeCCeEEEEECCC
Confidence            6788888889999999999999999999999999999987765331   00                0112357999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       ...|+|.|+|.+.|..|... ..+.|.|
T Consensus        72 -~~~D~G~Y~C~a~N~~g~~~-~~~~l~V   98 (99)
T 2yr3_A           72 -LPEDHGTYTCLAENALGQVS-CSAWVTV   98 (99)
T ss_dssp             -CTTCCBCEEEEEECSSCEEE-EECCEEE
T ss_pred             -ChhhCEEEEEEEEECCCeEE-EEEEEEE
Confidence             99999999999999988765 5666655

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=95.24  Aligned_cols=92  Identities=24%  Similarity=0.429  Sum_probs=72.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+...   .++.+..             .....+|.|.++
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~---~~~~~~~-------------~~~~~~L~i~~~   69 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG---GKYKLSE-------------DKGGFFLEIHKT   69 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSS---SSEEEEE-------------ETTEEEEEECSC
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC---CCEEEEE-------------eCCEEEEEECCC
Confidence            688888889999999999999999999999999999999887544   2221110             001236999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       ...|+|.|+|.+.|..+... ..+.|.|.
T Consensus        70 -~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~   97 (99)
T 3puc_A           70 -DTSDSGLYTCTVKNSAGSVS-SSCKLTIK   97 (99)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             -CcccCEEEEEEEEeCCCcEe-EEEEEEEE
Confidence             99999999999999988765 77777765

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=1.1e-15  Score=111.84  Aligned_cols=130  Identities=16%  Similarity=0.337  Sum_probs=87.8

Q ss_pred             CCCcceecCCcEEEEeeeCccc-Cc-eEEEEeCC--ccc------------CCCcceEEe---cCCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-IE-SITWQKGV--QQL------------PLNRRQKVF---PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~-~i~W~~~~--~~~------------~~~~~~~~~---~~~~l~i~~~~~~~~~g  179 (258)
                      +....+.+|+.++|.|.+.+.+ .+ .+.|+++.  ...            ....++...   ....|.|.+++. +|+|
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G  104 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRS-EDEA  104 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCS-TTCS
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCH-HHCE
Confidence            4556788999999999998754 34 79999863  221            011233332   223799999997 9999


Q ss_pred             EEEEEEEeCCCC--CccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        180 VYWCTATNKQGR--SSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       180 ~y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      .|+|.+.+..+.  .......|.|.    .+|.+...+.......|+.++|.|.+.+.+|+ +.|.|++||+.+..+
T Consensus       105 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  181 (234)
T 2j6e_L          105 DYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAG  181 (234)
T ss_dssp             EEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSS
T ss_pred             EEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCC
Confidence            999999987651  12223445553    34444433333334468899999999654565 599999999998654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.63  E-value=4.7e-15  Score=106.84  Aligned_cols=127  Identities=21%  Similarity=0.360  Sum_probs=87.8

Q ss_pred             CCCcceecCCcEEEEeeeCcc-------cCceEEEEeCCccc-----------------CCCcceEEec-----CCeEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-------PIESITWQKGVQQL-----------------PLNRRQKVFP-----NGTLLI  169 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-------~~~~i~W~~~~~~~-----------------~~~~~~~~~~-----~~~l~i  169 (258)
                      +..+.+.+|+.+.|.|.+.+.       +.+.+.|++++...                 ....+..+..     +.+|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            445678899999999998653       46789999976421                 0112333322     237999


Q ss_pred             EecccCCCCcEEEEEEEeCCCCC---ccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccC---CCCceeEEEECC
Q psy14532        170 ENVQKDHDRGVYWCTATNKQGRS---SSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG---DPPLTISWLKNG  243 (258)
Q Consensus       170 ~~~~~~~~~g~y~C~~~~~~~~~---~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~g  243 (258)
                      .+++. +|+|.|.|.+.+..+..   .+..+.|.|..++..+.......+.+|+.++|.|.+...   .|.+.+.|++++
T Consensus        87 ~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~  165 (214)
T 2zg1_A           87 GDARM-EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA  165 (214)
T ss_dssp             CSCCG-GGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESST
T ss_pred             ccCCH-hhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCC
Confidence            99997 99999999999875211   135677888775432222112236789999999999533   478999999998


Q ss_pred             Eec
Q psy14532        244 LPI  246 (258)
Q Consensus       244 ~~l  246 (258)
                      ..+
T Consensus       166 ~~~  168 (214)
T 2zg1_A          166 LSP  168 (214)
T ss_dssp             TSS
T ss_pred             Ccc
Confidence            654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.63  E-value=2e-15  Score=104.85  Aligned_cols=118  Identities=14%  Similarity=0.215  Sum_probs=85.3

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccC------------CCcceEE-ecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP------------LNRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~------------~~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +.+..|++++|.|.+.+ |.+.|.|++++..+.            ...+..+ ..+++|.|.+++. +|+|.|.|.+.+.
T Consensus         5 v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS-SDEDEYEMESPNI   82 (171)
T ss_dssp             EEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCG-GGCEEEEEECTTC
T ss_pred             EEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCCh-hhCceEEEEEeCC
Confidence            46788999999999854 788999999775321            1123333 2567899999998 9999999999887


Q ss_pred             CCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        189 QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       189 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      .+   ...+.|.|..++..+.....     +....|.|.+ .+.|.+.+.|+++|+.+....
T Consensus        83 ~~---~~~~~L~V~~~~~~p~i~~~-----~~~~~L~C~~-~~~p~p~i~W~~~~~~l~~~~  135 (171)
T 1ccz_A           83 TD---TMKFFLYVLEMVSKPMIYWE-----CSNATLTCEV-LEGTDVELKLYQGKEHLRSLR  135 (171)
T ss_dssp             CS---CEEEEEEEECCCCCCEEEEE-----TTTTEEEEEC-SSCSSCEEEEEETTEEEEEES
T ss_pred             CC---cEEEEEEEECcCCCCEEEEe-----cCCcEEEEEe-CCCCCcEEEEEECCEECcCCc
Confidence            65   56777888765432222111     1113899999 567889999999999987543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=4.4e-16  Score=100.11  Aligned_cols=97  Identities=31%  Similarity=0.521  Sum_probs=76.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+............               ....+|.|.++
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---------------~~~~~L~i~~v   73 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE---------------NGVHSLIIEPV   73 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECT---------------TSCEEEEESSC
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEec---------------CCeEEEEEeeC
Confidence            788988999999999999999999999999999999998776543110000000               01237999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       +..|+|.|+|.+.|..+... ..+.|.|..++.
T Consensus        74 -~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~  105 (110)
T 2dm3_A           74 -TSRDAGIYTCIATNRAGQNS-FSLELVVAAKES  105 (110)
T ss_dssp             -CGGGCSBBCEEEECSSCEEE-ECCEEEEECCCC
T ss_pred             -CcccCEEEEEEEECCCCEEE-EEEEEEEeCCCC
Confidence             99999999999999988765 788888876653

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.63  E-value=1.1e-15  Score=112.83  Aligned_cols=126  Identities=15%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCce-----EEEEeCCcccCCC---------------cceEE------ecCCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIES-----ITWQKGVQQLPLN---------------RRQKV------FPNGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~-----i~W~~~~~~~~~~---------------~~~~~------~~~~~l~i~~~  172 (258)
                      +....+..|+.+.|.|.+.+.|.+.     +.|++++......               .+..+      ..+.+|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3445788999999999998776654     9999964332100               00000      12235999999


Q ss_pred             ccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecc
Q psy14532        173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPIL  247 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~  247 (258)
                      +. +|+|.|+|.+.+..+ .....+.|.|..+|.+...+. ..+..|+.+.|.|.+.++.|.+ .|.|+++|+.+.
T Consensus        90 ~~-~D~G~Y~C~~~~~~~-~~~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~  162 (248)
T 3pv7_A           90 QL-EEAGEYRCEVVVTPL-KAQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFP  162 (248)
T ss_dssp             CG-GGCEEEEEEEEETTE-EEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSC
T ss_pred             CH-HHCeEEEEEEEeCCc-cceeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCC
Confidence            97 999999999998765 345677888888887766553 3355688889999996448888 999999996543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3.2e-15  Score=97.28  Aligned_cols=87  Identities=16%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      +..+.+.+|+++.|.|.+.+.|.+.+.|+|++..+...    +..+.             ......+|.|.++ ...|+|
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~----~~~~~-------------~~~~~~~L~i~~~-~~~D~G   92 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS----RVHVR-------------TSDFDTVFFVRQA-ARSDSG   92 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCS----SCEEE-------------ECSSEEEEEESSC-CTTTCE
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCC----cEEEE-------------ECCCeEEEEECCC-ChhcCE
Confidence            45678899999999999999999999999999887522    11111             0011245999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         89 VYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      .|+|.+.|..|... ..+.|.|...|
T Consensus        93 ~Y~C~a~N~~G~~~-~~~~l~V~~~P  117 (118)
T 2e7c_A           93 EYELSVQIENMKDT-ATIRIRVVEKA  117 (118)
T ss_dssp             EEEEEEECSSCEEC-CEEEEEEECCC
T ss_pred             EEEEEEEeCCCeEE-EEEEEEEEcCC
Confidence            99999999998766 88888887654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.62  E-value=2.1e-15  Score=96.55  Aligned_cols=101  Identities=13%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCC---CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .|.|...|.++.+.+|++++|.|.+.+.|.   +.|.|+|++..........++.+...       ..+......++|.|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~L~I   76 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS-------YDRASKVYLFELHI   76 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEE-------EETTTTEEEEEEEE
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeE-------EecccccceEEEEE
Confidence            477888889999999999999999999887   89999997621111000011111000       00000112457999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .++ +..|+|.|+|.+.|..|... ..+.|.|.
T Consensus        77 ~~v-~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~  107 (108)
T 3cx2_A           77 TDA-QPAFTGSYRCEVSTKDKFDC-SNFNLTVH  107 (108)
T ss_dssp             CSC-CGGGCEEEEEEEECSSCEEE-EEEEEEEE
T ss_pred             ecC-CCccCEEEEEEEecCCCceE-EEEEEEEe
Confidence            999 99999999999999998776 77888775

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.62  E-value=1.4e-15  Score=107.01  Aligned_cols=118  Identities=17%  Similarity=0.199  Sum_probs=86.2

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCC--------------CcceEEe----c--CCeEEEEecccCCCCcE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--------------NRRQKVF----P--NGTLLIENVQKDHDRGV  180 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~----~--~~~l~i~~~~~~~~~g~  180 (258)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|++++.....              ..+....    .  ..+|.|.++.. +|+|.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~-~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCG-GGCEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCH-HHCEE
Confidence            35678999999999999888899999998753111              1222222    1  33599999997 99999


Q ss_pred             EEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       181 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      |+|.+.+..+     .+.|.|...+    .+....+.+|+.++|.|.+ .+.|.+.+.|+++|..+...
T Consensus        83 Y~C~~~~~~~-----~~~l~V~~~~----~~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~  141 (184)
T 2ny1_B           83 YICEVEDQKE-----EVQLLVFGLT----ANSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQG  141 (184)
T ss_dssp             EEEEETTEEE-----EEEEEEEEEE----ESSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCEEEE
T ss_pred             EEEEEEcCCC-----cEEEEEEEec----CCCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCccccC
Confidence            9999987643     4455555321    1224467899999999999 56799999999998766443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.62  E-value=4.2e-15  Score=108.11  Aligned_cols=125  Identities=19%  Similarity=0.269  Sum_probs=85.0

Q ss_pred             CCcceecCCcEEEEeeeCcccCc---eEEEEeCCcccC-----------------CCcceEEe------cCCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIE---SITWQKGVQQLP-----------------LNRRQKVF------PNGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~---~i~W~~~~~~~~-----------------~~~~~~~~------~~~~l~i~~~~  173 (258)
                      .++.+.+|++++|.|.+.+.+.+   .|.|+|++....                 ...+....      .+.+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            44678899999999998764433   799998764321                 01111111      12369999999


Q ss_pred             cCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECC-Eeccc
Q psy14532        174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG-LPILS  248 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g-~~l~~  248 (258)
                      . +|+|.|+|.|.|..+. .  ...+.+...+..........+..|+.+.|.|.+.++.|.+.|.|++++ ..+..
T Consensus        92 ~-~D~G~Y~C~a~n~~~~-~--~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~  163 (226)
T 4f80_A           92 A-SDSGKYLCYFQDGDFY-E--KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT  163 (226)
T ss_dssp             G-GGCEEEEEEEEETTEE-E--EEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCC
T ss_pred             h-HHCeeEEEEEECCCcE-E--EEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCC
Confidence            7 9999999999997653 2  233444443333333334567789999999999655799999999854 44443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.62  E-value=2.2e-15  Score=93.38  Aligned_cols=89  Identities=20%  Similarity=0.219  Sum_probs=67.1

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+ +.+.+.|+|+|..+...   .++.+..             .....+|.|.+
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~---~~~~i~~-------------~g~~~~L~I~~   66 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS---PDCEIIE-------------DGKKHILILHN   66 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB---TTEEEEE-------------ETTEEEEEECS
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC---CCEEEEE-------------ECCEEEEEECC
Confidence            3688999999999999999999999976 45789999999988654   2222210             00123799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      + +.+|+|.|+|.+.|..     .+..|.|..
T Consensus        67 v-~~~D~G~Y~C~a~n~~-----~sa~L~V~~   92 (93)
T 1waa_A           67 C-QLGMTGEVSFQAANTK-----SAANLKVKE   92 (93)
T ss_dssp             C-CGGGCEEEEEEETTEE-----EEEEEEEEC
T ss_pred             C-ChhhCEEEEEEECCCc-----EEEEEEEEc
Confidence            9 9999999999997642     455666653

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.62  E-value=2.8e-16  Score=114.96  Aligned_cols=156  Identities=17%  Similarity=0.236  Sum_probs=82.7

Q ss_pred             eEEEEEEEeCCcceeeceEEEEEecCCee--ccCCCcc-eecCCcEEEEeeeCcc---c-CceEEEEeCCcccCCCcce-
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTGAPFV--RPMGNVS-AIAGEPLYLGCPVAGY---P-IESITWQKGVQQLPLNRRQ-  159 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~--~~~~~~~-~~~g~~~~l~C~~~~~---~-~~~i~W~~~~~~~~~~~~~-  159 (258)
                      |.|.|.+.+.-+... .  .. +..+|.+  ..+.... +..|+.+.|.|.+.+.   | ...|+|++++..+...... 
T Consensus         1 ~~~~~~~~~~~~~c~-~--~~-~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~   76 (240)
T 4acp_A            1 GTKSCDKTHTCPPCP-A--PE-LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP   76 (240)
T ss_dssp             --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred             CceeeeeeecCCCCC-c--cc-cCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence            689999887644211 1  10 1112222  2233333 4569999999999885   3 3489999999876432111 


Q ss_pred             -EEecC------CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEE--EeecCCccccCCCCCccCCCCeeeEEEEec
Q psy14532        160 -KVFPN------GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHI--SVTVPPKIAPFEFQPDLHSGDRAGVQCLVT  229 (258)
Q Consensus       160 -~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  229 (258)
                       ....+      +.|.|..... +|.|.|+|.|.+..+. .....+.+  .+..+|.+.+.+.......|+.++|.|.+.
T Consensus        77 ~~~~~~g~~~~~s~L~i~~~~~-~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~  155 (240)
T 4acp_A           77 REEQYNSTYRVVSVLTVLHQDW-LNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVK  155 (240)
T ss_dssp             CEEC---CEEEEEEEECCHHHH-HHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEE
T ss_pred             ceECCCCeEEEEEEEEEechhc-cCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEe
Confidence             01112      2466655555 6889999999997652 22222221  233466665554443334589999999996


Q ss_pred             cCCCC-ceeEEEECCEeccc
Q psy14532        230 KGDPP-LTISWLKNGLPILS  248 (258)
Q Consensus       230 ~~~p~-~~~~W~~~g~~l~~  248 (258)
                      +.+|. ..+.|++||+.+..
T Consensus       156 gf~P~~i~v~W~k~g~~~~~  175 (240)
T 4acp_A          156 GFYPSDIAVEWESNGQPENN  175 (240)
T ss_dssp             EEBSSCCEEEEEETTEECSS
T ss_pred             EEeCCCcEEEEEECCEECCC
Confidence            55676 48999999998864

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.62  E-value=1.3e-15  Score=97.62  Aligned_cols=93  Identities=29%  Similarity=0.485  Sum_probs=66.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+...   .....               ...+++|.|.++
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~---------------~~~~~~L~i~~v   71 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED---SGIVL---------------KDGNRNLTIRRV   71 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCB---TTEEE---------------ETTTTEEEECSC
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccC---CCeEE---------------eCCCcEEEEeec
Confidence            688888888999999999999999999888999999998766543   11111               113568999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                       +.+|+|.|+|.+.|..|... ..+.|.|..++
T Consensus        72 -~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~  102 (108)
T 3kvq_A           72 -RKEDEGLYTCQACSVLGCAK-VEAFFIIEGAQ  102 (108)
T ss_dssp             -CGGGCEEEEEEEC----CEE-EEEEEEEEC--
T ss_pred             -CcccCEEEEEEEEeCCCceE-EEEEEEEeCCC
Confidence             99999999999999988777 77888887665

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.61  E-value=7.6e-16  Score=112.86  Aligned_cols=125  Identities=14%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             eecCCcEEEEeeeCcc---cCc-eEEEEeCCcccCCCcc---e-----EEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        124 AIAGEPLYLGCPVAGY---PIE-SITWQKGVQQLPLNRR---Q-----KVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~---~~~-~i~W~~~~~~~~~~~~---~-----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +.+|+.++|.|.+.+.   |.+ .|.|++++..+.....   .     .......|.|.++.. +|+|.|+|.+.+..+.
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW-LNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHH-HTTCCEEEEEECSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHc-cCCCeEEEEEecccCC
Confidence            6789999999999876   665 8999998865432110   0     011223688888887 8999999999998763


Q ss_pred             Cc-cceEEE--EeecCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        192 SS-SQNVHI--SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       192 ~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      .. ...+.+  .+..+|.+.+.+.......|+.++|.|.+.+.+|. +.|.|++||+.+...
T Consensus       108 ~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  169 (239)
T 1i1c_A          108 APIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY  169 (239)
T ss_dssp             SCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred             CCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCc
Confidence            21 112222  23445655544433333458899999999654665 589999999998653

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.61  E-value=1.7e-15  Score=108.89  Aligned_cols=124  Identities=22%  Similarity=0.400  Sum_probs=86.0

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC----------------CCcceEEec-----CCeEEEEeccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP----------------LNRRQKVFP-----NGTLLIENVQK  174 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~  174 (258)
                      ....+.+|+++.|.|.+.+.+  .+.+.|+++.  ....                ...++.+..     ..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            445788999999999998754  4799999853  2110                123344332     13799999998


Q ss_pred             CCCCcEEEEEEEeCCCCCccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEec
Q psy14532        175 DHDRGVYWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPI  246 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l  246 (258)
                       +|+|.|.|.+.+..  .......|.|..    +|.+...+....+..|+.++|.|.+.+..|.+ .+.|+++|..+
T Consensus        88 -~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  161 (210)
T 3d9a_H           88 -EDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  161 (210)
T ss_dssp             -GGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             -ccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence             99999999999863  122335566653    33333333234567899999999996455877 99999998864

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.61  E-value=6.6e-16  Score=98.48  Aligned_cols=92  Identities=20%  Similarity=0.418  Sum_probs=73.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+...   .++.+.             ....+++|.|.++
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~---~~~~~~-------------~~~~~~~L~I~~v   77 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS---ARHQVT-------------TTKYKSTFEISSV   77 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTC---SSEEEE-------------ECSSEEEEEECCC
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCC---CCEEEE-------------ECCCEEEEEECcC
Confidence            578888999999999999999999999999999999998776543   222111             0012457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|.
T Consensus        78 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~  105 (106)
T 1nct_A           78 -QASDEGNYSVVVENSEGKQE-AEFTLTIQ  105 (106)
T ss_dssp             -CSSCCSEEEECCBCSSCBCC-EEEEEEEC
T ss_pred             -CchhCEEEEEEEEeCCCeEE-EEEEEEEE
Confidence             99999999999999988766 77777764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=95.25  Aligned_cols=85  Identities=32%  Similarity=0.591  Sum_probs=69.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+...                         .+.+|.|.++
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-------------------------~~~~L~i~~v   64 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------------------------PSPVLILPEI   64 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-------------------------CCSEEEEESC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-------------------------CCCEEEECCC
Confidence            577888888899999999999999999888899999998766543                         2458999999


Q ss_pred             ccCCCceEEEEEEEeCCc-ceeeceEEEEEec
Q psy14532         82 QKDHDRGVYWCTATNKQG-RSSSQNVHISVTG  112 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~  112 (258)
                       +..|+|.|+|.+.+..+ ...+..+.|.|..
T Consensus        65 -~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~~   95 (96)
T 2ens_A           65 -GPQDQGTYSCVATHSSHGPQESRAVSISIIE   95 (96)
T ss_dssp             -CTTTCEEEECEECCSSCCCEECCCEEEEECC
T ss_pred             -CcccCEEEEEEEEeCCCCcEEEEEEEEEEeC
Confidence             99999999999999644 3444677777653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.61  E-value=3.7e-15  Score=110.47  Aligned_cols=126  Identities=17%  Similarity=0.351  Sum_probs=90.6

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~  172 (258)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+++.  ..+.                 ...++.+..     ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            4456788999999999998764  6799999842  2110                 123343332     237999999


Q ss_pred             ccCCCCcEEEEEEEeCCCC----CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC-----ceeEEEE--
Q psy14532        173 QKDHDRGVYWCTATNKQGR----SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-----LTISWLK--  241 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-----~~~~W~~--  241 (258)
                      +. +|+|.|.|.+.+..+.    .....+.|.|..+|.+...+....+.+|++++|.|.+ .+.|.     +.+.|++  
T Consensus        87 ~~-~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~  164 (256)
T 1nqb_A           87 TS-EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS-SQSIVHSNGNTYLEWYLQK  164 (256)
T ss_dssp             CG-GGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEEC
T ss_pred             Ch-hhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEe-cCcccccccceEEEEEEEC
Confidence            98 9999999999987542    1234567777777665555555678999999999999 46554     3999999  


Q ss_pred             CCEec
Q psy14532        242 NGLPI  246 (258)
Q Consensus       242 ~g~~l  246 (258)
                      +|+.+
T Consensus       165 ~g~~~  169 (256)
T 1nqb_A          165 PGQSP  169 (256)
T ss_dssp             TTSCE
T ss_pred             CCCCc
Confidence            66544

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.61  E-value=2.6e-15  Score=94.70  Aligned_cols=92  Identities=23%  Similarity=0.429  Sum_probs=69.1

Q ss_pred             CCcceeec----eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQLIYKF----IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~~~~~~----~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ||.+...+    ..+.+.+|+++.|.|.+.+.|.+.+.|++++..+..........               .....++|.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~---------------~~~~~~~L~   68 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK---------------VRNQHWSLI   68 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCE---------------EEGGGTEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEE---------------EecCeEEEE
Confidence            56665433    46778999999999999999999999999998776442111111               111245799


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      |.++ +..|+|.|+|.+.|..|... ..+.|.|
T Consensus        69 i~~v-~~~D~G~Y~C~a~N~~g~~~-~~~~l~V   99 (100)
T 3caf_A           69 MESV-VPSDKGNYTCVVENEYGSIN-HTYHLDV   99 (100)
T ss_dssp             ECSC-CGGGCEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             EccC-CcCCCEEEEEEEEeCCCEEE-EEEEEEE
Confidence            9999 99999999999999988766 6666665

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.61  E-value=7e-15  Score=102.98  Aligned_cols=119  Identities=22%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCceEEEEeC-Cccc--------------CCCcceEE-ecCCeEEEEecccCCCCcEEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKG-VQQL--------------PLNRRQKV-FPNGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~-~~~~--------------~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~  182 (258)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+++ +..+              ....+..+ ..+++|.|.+++. +|+|.|+
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~-~D~G~Y~   85 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSK-EDRGDYY   85 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCG-GGCEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCH-HHCeEEE
Confidence            4467889999999999854 34679999994 2211              11134555 4667899999998 9999999


Q ss_pred             EEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecc
Q psy14532        183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  247 (258)
Q Consensus       183 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~  247 (258)
                      |.+.+..  .....+.|.|..++..+...     ..+..++|.|.+..+ |.+.|.|+++|..+.
T Consensus        86 C~v~~~~--~~~~~~~L~V~~~~~~P~i~-----~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~  142 (180)
T 2dru_A           86 MRMLHET--EDQWKITMEVYEMVSKPMIY-----WECSNATLTCEVLEG-TDVELKLYQGKEHLR  142 (180)
T ss_dssp             EEEESSS--EEEEEEEEEEECCCCCCEEE-----EEGGGTEEEEECSSC-TTCEEEEEETTEEEE
T ss_pred             EEEEcCC--eEEEEEEEEEECCCCCCEEE-----ecCCCEEEEEEeCCC-CCCEEEEEECCeECc
Confidence            9998764  34566778887653322111     134679999999556 889999999999886

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.61  E-value=3.7e-15  Score=108.00  Aligned_cols=124  Identities=25%  Similarity=0.489  Sum_probs=86.2

Q ss_pred             CcceecCCcEEEEeeeCcccC-----ceEEEEeCCccc-------------CCCcceEEec------CCeEEEEecccCC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPI-----ESITWQKGVQQL-------------PLNRRQKVFP------NGTLLIENVQKDH  176 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~-----~~i~W~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~~~~  176 (258)
                      .+.+.+|+.+.|.|.+.+.+.     +.+.|++++...             ....+..+..      +..|.|.+++. +
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~-~   82 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV-T   82 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG-G
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc-c
Confidence            456789999999999887653     689999976543             1122333322      56799999998 9


Q ss_pred             CCcEEEEEEEeCCCCCccceEEEEeecC---CccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEE-CCEeccc
Q psy14532        177 DRGVYWCTATNKQGRSSSQNVHISVTVP---PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILS  248 (258)
Q Consensus       177 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~l~~  248 (258)
                      |+|.|+|.+.+..  ..+..+.|.|..+   |.+...+ ...+..|+.+.|.|.+..+.|.+.+.|++ ++..+..
T Consensus        83 D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~  155 (222)
T 4i0k_A           83 DEGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTG  155 (222)
T ss_dssp             GCSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCS
T ss_pred             cCEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCC
Confidence            9999999999863  2344556666654   3333222 33577899999999996688999999999 5666554

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=2.8e-15  Score=97.27  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec---CCCeEEEeeCCEeCcCCc-cccceecccceeeccccccceeeeeCCcEEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDR-HENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      |.|...|.++.+.+|++++|.|.+.+.   |.|.|.|||+.. +.... ...++.+..      .+.. .....+.+|.|
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~-~~~~~~~~~~~~~~~------~~~~-~~~~~~~~L~I   79 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKW-MDLASKAGKHLQLKE------TFER-HSRVYTFEMQI   79 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSS-CCHHHHTTSSEEEEE------EEET-TTTEEEEEEEE
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcC-cccCCCCCceEEEcc------cccc-ccccceEEEEE
Confidence            457888999999999999999999864   789999999742 11000 001111110      0000 00112468999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      .++ +..|+|.|+|.+.+..+... ..+.|.|..
T Consensus        80 ~~v-~~~DaG~Y~Cevsn~~g~~~-~~~~L~V~~  111 (126)
T 2dav_A           80 IKA-KDNFAGNYRCEVTYKDKFDS-CSFDLEVHE  111 (126)
T ss_dssp             CSC-CTTSCEEEEEEEECSSCEEE-ECCEEEEEC
T ss_pred             ccC-CcccCEEEEEEEEeCCCcEE-EEEEEEEEe
Confidence            999 99999999999999987766 888999987

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.60  E-value=4.7e-15  Score=107.55  Aligned_cols=127  Identities=20%  Similarity=0.362  Sum_probs=86.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-------------------CCcceEEec-----CCeEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-------------------LNRRQKVFP-----NGTLLIEN  171 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-------------------~~~~~~~~~-----~~~l~i~~  171 (258)
                      ....+.+|+.++|.|.+.+.+  .+.+.|+++.  ....                   ...++.+..     +.+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            345688999999999998754  6789999853  2110                   123343332     23799999


Q ss_pred             cccCCCCcEEEEEEEeCCCC----CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEEC
Q psy14532        172 VQKDHDRGVYWCTATNKQGR----SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKN  242 (258)
Q Consensus       172 ~~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~  242 (258)
                      ++. +|+|.|.|.+.+..+.    .......|.|..    +|.+...+....+..|+.++|.|.+.+..|.+ .|.|+++
T Consensus        88 v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  166 (222)
T 1q9r_B           88 LRA-EDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  166 (222)
T ss_dssp             CCG-GGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCc-ccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence            998 9999999999986531    122345666654    23333222233456899999999996445877 9999999


Q ss_pred             CEecc
Q psy14532        243 GLPIL  247 (258)
Q Consensus       243 g~~l~  247 (258)
                      |+.+.
T Consensus       167 g~~~~  171 (222)
T 1q9r_B          167 SLSSG  171 (222)
T ss_dssp             TBCTT
T ss_pred             CeEcc
Confidence            98764

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.60  E-value=6.8e-15  Score=121.62  Aligned_cols=129  Identities=26%  Similarity=0.526  Sum_probs=97.3

Q ss_pred             CcceecCCcEEEEeee-CcccCceEEEEeCCcccC------------CCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        121 NVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLP------------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      ...+..|++++|.|.+ .+.|.+.+.|++++..+.            ...+..+..+++|.|.+++. +|+|.|+|.+.+
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~-~D~G~Y~C~~~n  453 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGI-QDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCG-GGCEEEEEEEEC
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEecccc-ccCeEEEEEEEc
Confidence            3567889999999999 778889999999876321            13345566778899999998 999999999999


Q ss_pred             CCCCCccceEEEEeecCCccccC-CCCCccCCCCee-eEEEEeccCCCCceeEEEECCEeccccc
Q psy14532        188 KQGRSSSQNVHISVTVPPKIAPF-EFQPDLHSGDRA-GVQCLVTKGDPPLTISWLKNGLPILSAM  250 (258)
Q Consensus       188 ~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~~~g~~l~~~~  250 (258)
                      ..+......+.|.|..+|..+.. .....+..|+.. .|.|.+..++|.+.|.|++||+.|....
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~  518 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNE  518 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTS
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCC
Confidence            88754466788888876653322 223335555554 6699996557999999999999997543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.60  E-value=4.5e-15  Score=107.45  Aligned_cols=129  Identities=19%  Similarity=0.293  Sum_probs=93.0

Q ss_pred             CCcceecCCcEEEEeeeCcccCc---eEEEEeCCcccCC----------------CcceEE----------ecCCeEEEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIE---SITWQKGVQQLPL----------------NRRQKV----------FPNGTLLIE  170 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~---~i~W~~~~~~~~~----------------~~~~~~----------~~~~~l~i~  170 (258)
                      +.+.+..|++++|.|.+.+.+.+   .|.|+|++.....                ..+...          ..+++|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            44667899999999999876654   4899997643210                001111          123569999


Q ss_pred             ecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       171 ~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                      +++. +|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+..+.|++.+.|++++..+...
T Consensus        89 ~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           89 GLRV-EDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             SCCG-GGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             cCCH-HHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence            9998 99999999999877655555556667667666555555566778888888888778899999999987665443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.60  E-value=3.7e-15  Score=109.35  Aligned_cols=120  Identities=14%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCC-CCccceEEE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHI  199 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l  199 (258)
                      .+.+|++++|.|.+.+ +...+.|+|++..+....  ......++.|.|.+++. +|+|.|+|.+.+..+ ...+..+.|
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~~~~s~~S~~~~L   94 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNS-RMAGQYSCIYRVGELWSEPSNLLDL   94 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCG-GGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCc-ccCeEEEEEEecCCccccCCcceEE
Confidence            7889999999999875 456899999987653110  00112345799999997 999999999987643 234567778


Q ss_pred             Eeec---CCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEecc
Q psy14532        200 SVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  247 (258)
Q Consensus       200 ~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~  247 (258)
                      .|..   +|.+...+ ...+.+|+.++|.|.+. +. .+.|.|+|+|..+.
T Consensus        95 ~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~-~~-~~~~~w~k~g~~~~  142 (242)
T 1p6f_A           95 VVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLD-TA-TSMFLLLKEGRSSH  142 (242)
T ss_dssp             EEECCSCCCEEEEES-CSEEETTCEEEEEEECT-TS-CSEEEEEECSSSCE
T ss_pred             EeecccCCCceEccC-CCccCCCCcEEEEEecC-CC-CCEEEEEECCCccC
Confidence            7764   44444333 34678999999999994 43 46999999998765

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.60  E-value=2.9e-15  Score=110.38  Aligned_cols=131  Identities=19%  Similarity=0.359  Sum_probs=88.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC----------------CcccCC---CcceEEec----CCeEEEEecccC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG----------------VQQLPL---NRRQKVFP----NGTLLIENVQKD  175 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~----------------~~~~~~---~~~~~~~~----~~~l~i~~~~~~  175 (258)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|++.                +.....   ..++.+..    ..+|.|.+++. 
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-   86 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHP-   86 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCG-
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCH-
Confidence            3456788999999999998888889999982                111111   12333322    23699999998 


Q ss_pred             CCCcEEEEEEEeCCC---CCccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCE
Q psy14532        176 HDRGVYWCTATNKQG---RSSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGL  244 (258)
Q Consensus       176 ~~~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~  244 (258)
                      +|+|.|.|.+.+..+   ........|.|..      +|.+... +....+..|+.++|.|.+.+.+|++ .+.|+++|+
T Consensus        87 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  166 (246)
T 4dzb_B           87 EDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  166 (246)
T ss_dssp             GGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             HHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCE
Confidence            999999999987532   1122445566654      3333222 2223355699999999995445443 899999999


Q ss_pred             eccccc
Q psy14532        245 PILSAM  250 (258)
Q Consensus       245 ~l~~~~  250 (258)
                      .|..+.
T Consensus       167 ~l~~~~  172 (246)
T 4dzb_B          167 EVHSGV  172 (246)
T ss_dssp             EECTTE
T ss_pred             ECCCCc
Confidence            997643

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=7.9e-15  Score=108.78  Aligned_cols=125  Identities=22%  Similarity=0.324  Sum_probs=87.1

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC----------------CCcceEEec-----CCeEEEEeccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP----------------LNRRQKVFP-----NGTLLIENVQK  174 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~  174 (258)
                      ....+.+|+.++|.|.+.+.|  .+.+.|+++.  ..+.                ...++.+..     ..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            345688999999999998864  6799999852  2111                123444432     23799999997


Q ss_pred             CCCCcEEEEEEEeCCC-------C-CccceEEEEeecCC---------------ccccCCCCCccCCCCeeeEEEEeccC
Q psy14532        175 DHDRGVYWCTATNKQG-------R-SSSQNVHISVTVPP---------------KIAPFEFQPDLHSGDRAGVQCLVTKG  231 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~~-------~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~  231 (258)
                       +|+|.|+|.+.+..+       . .......|.|..++               .+...+....+.+|++++|.|.+ .+
T Consensus        88 -~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~  165 (257)
T 1f3r_B           88 -DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG-SQ  165 (257)
T ss_dssp             -TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC-SS
T ss_pred             -ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE-CC
Confidence             999999999998743       1 11234567776643               12222334568899999999999 57


Q ss_pred             CCCceeEEEE--CCEec
Q psy14532        232 DPPLTISWLK--NGLPI  246 (258)
Q Consensus       232 ~p~~~~~W~~--~g~~l  246 (258)
                      .|.+.+.|++  +|..+
T Consensus       166 ~~~~~v~W~k~~~g~~~  182 (257)
T 1f3r_B          166 NINNYLAWYQQKLGEAP  182 (257)
T ss_dssp             CCBTCEEEEEECTTSCC
T ss_pred             cCCCcEEEEEECCCCCc
Confidence            7778999999  66544

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.59  E-value=4.4e-15  Score=108.35  Aligned_cols=127  Identities=21%  Similarity=0.285  Sum_probs=85.3

Q ss_pred             CCcceecCCcEEEEeeeCcc-cC-c-eEEEEeCCccc-CCCcceE-EecCC------eEEEEecccCCCCcEEEEEEEeC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGY-PI-E-SITWQKGVQQL-PLNRRQK-VFPNG------TLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~-~~-~-~i~W~~~~~~~-~~~~~~~-~~~~~------~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      ....+..|+.++|.|.+.+. |. + .+.|++++..+ ....... ...++      .|.|.++.. +|.|.|+|.+.+.
T Consensus        21 ~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~-~D~g~Y~C~~~~~   99 (231)
T 2w59_A           21 SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDW-LSGERFTCTVQHE   99 (231)
T ss_dssp             CHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHH-HTTCCEEEEEECT
T ss_pred             ChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhc-cCCCEEEEEEEcC
Confidence            33456789999999999884 63 4 99999988776 3222111 11222      588888887 8999999999997


Q ss_pred             CCCCccceEEEEee------cCCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEECCEeccccc
Q psy14532        189 QGRSSSQNVHISVT------VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSAM  250 (258)
Q Consensus       189 ~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~~  250 (258)
                      .+.   ..+.+.+.      .+|.+.+.+.......|+.++|.|.+.+.+| .+.|.|++||+.+..+.
T Consensus       100 ~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  165 (231)
T 2w59_A          100 ELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATE  165 (231)
T ss_dssp             TCS---SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGG
T ss_pred             CCC---CceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcc
Confidence            642   33344443      3444433322212223567999999965456 47999999999997654

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.59  E-value=1.1e-14  Score=99.42  Aligned_cols=99  Identities=21%  Similarity=0.352  Sum_probs=75.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+...   .++.+..            ......+|.|.++
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~---~~~~~~~------------~~~~~~~L~I~~v  105 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES---RHFQIDY------------DEEGNCSLTISEV  105 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS---SSEEEEE------------CTTCEEEEEESSC
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC---CcEEEEE------------CCCCeEEEEECCC
Confidence            577888888899999999999999999999999999999887644   1211110            0001247999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR  117 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~  117 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|..++...
T Consensus       106 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          106 -CGDDDAKYTCKAVNSLGEAT-CTAELLVETMGKEG  139 (154)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEECC----
T ss_pred             -ChhcCEEEEEEEEECCCeEE-EEEEEEEeCcCcCC
Confidence             99999999999999998866 78888888776443

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=2.6e-15  Score=96.31  Aligned_cols=101  Identities=20%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeec---CCCeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~---~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +.|...|.++.+.+|++++|.|.+.+.   |.|.|.|||+.. .+... ...++.+..      .+. +.....+.+|.|
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~-~~~~~~~~~------~~~-~~~~~~~~~L~I   84 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK-SGARFSFKE------SHN-SASNVYTVELHI   84 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCS-TTSSCEEEE------EEC-SSSCEEEEEEEE
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCC-CccEEEecc------ccc-cccccceEEEEE
Confidence            456778899999999999999999874   788999999742 11111 011111110      000 011123568999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      .++ ...|+|.|+|.+.+..+... ..+.|.|..+
T Consensus        85 ~~v-~~~D~G~Y~Cevsn~~g~~s-~~~~L~V~~~  117 (118)
T 2edn_A           85 GKV-VLGDRGYYRLEVKAKDTCDS-CGFNIDVEAP  117 (118)
T ss_dssp             SSC-CTTTCSCEEEEEECSSCEEE-EEECCEEECC
T ss_pred             eeC-ChhhCEEEEEEEEEcCCcEE-EEEEEEEEcC
Confidence            999 99999999999999998766 8888888754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.59  E-value=3.6e-15  Score=108.52  Aligned_cols=126  Identities=22%  Similarity=0.366  Sum_probs=81.6

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~~  173 (258)
                      ....+.+|++++|.|.+.+.+  .+.+.|+++.  ....                 ...++.+..     +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence            446688999999999998765  6789999854  2211                 122333322     2479999999


Q ss_pred             cCCCCcEEEEEEEeCCCCCccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEec
Q psy14532        174 KDHDRGVYWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPI  246 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l  246 (258)
                      . +|+|.|.|.+.+...........|.|..    +|.+........+..|+.++|.|.+.+.+|.+ .|.|+++|..+
T Consensus        88 ~-~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           88 S-DDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             G-GGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             c-ccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            8 9999999999986321122345677764    23332222223456899999999996445766 99999998875

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.59  E-value=3.1e-14  Score=89.20  Aligned_cols=89  Identities=20%  Similarity=0.427  Sum_probs=70.1

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC--cEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG--TLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~   80 (258)
                      .+...+.++.+.+|++++|.|.+.+. |.+.+.|++++..+...   .++.+.               ..++  +|.|.+
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~---~~~~~~---------------~~~~~~~L~i~~   64 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS---EKYEIT---------------YEDGVAILYVKD   64 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS---SSEEEE---------------EETTEEEEEECS
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC---CCEEEE---------------EcCCeEEEEEec
Confidence            34556778899999999999999996 88999999999877543   222111               1233  799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      + +..|+|.|+|.+.|..|... ..+.|.|..
T Consensus        65 v-~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~   94 (97)
T 2bk8_A           65 I-TKLDDGTYRCKVVNDYGEDS-SYAELFVKG   94 (97)
T ss_dssp             C-CGGGCEEEEEEEECSSCEEE-EEEEEEETT
T ss_pred             C-ChhhCeEEEEEEECCCCeEe-EEEEEEEEe
Confidence            9 99999999999999988776 677777754

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.58  E-value=1.3e-14  Score=107.19  Aligned_cols=122  Identities=16%  Similarity=0.248  Sum_probs=84.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCccc--------------CCCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL--------------PLNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~--------------~~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|+++....              ....++....   ..+|.|.++.. +|+|.|
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y   89 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ-EDIGTY   89 (250)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh-hhCEEE
Confidence            44566889999999999999888899999853110              0112232222   12699999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeecCC-------------------ccccCCCCCccCCCCeeeEEEEeccCCC--CceeEEE
Q psy14532        182 WCTATNKQGRSSSQNVHISVTVPP-------------------KIAPFEFQPDLHSGDRAGVQCLVTKGDP--PLTISWL  240 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~~p-------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~  240 (258)
                      .|.+.+..+........|.|..++                   .....+....+.+|+.++|.|.+ .+.|  .+.+.|+
T Consensus        90 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~  168 (250)
T 3esu_F           90 FCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKD-SGYAFSSSWMNWV  168 (250)
T ss_dssp             EEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEEC-CSTTGGGSEEEEE
T ss_pred             EEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEe-cCCcccCCEEEEE
Confidence            999998755333444566665531                   12222344568899999999999 4655  6899999


Q ss_pred             EC
Q psy14532        241 KN  242 (258)
Q Consensus       241 ~~  242 (258)
                      ++
T Consensus       169 k~  170 (250)
T 3esu_F          169 KQ  170 (250)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.58  E-value=4.6e-15  Score=89.92  Aligned_cols=82  Identities=23%  Similarity=0.407  Sum_probs=60.2

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ++.++.+.+|+++.|.|.+.+ |.+.+.|+|+|..+...   .++.+..             .....+|.|.++ +.+|+
T Consensus         2 ~lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~---~~~~~~~-------------~~~~~~L~I~~~-~~~D~   63 (84)
T 2lu7_A            2 HMTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ---GRVQLEQ-------------AGARQVLRVQGA-RSGDA   63 (84)
T ss_dssp             -CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC---SSEEEEE-------------CSSCEEEEESSC-SSTTC
T ss_pred             CCeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc---ccEEEee-------------cCCeEEEEecCC-CCccc
Confidence            356788999999999999866 78899999999988755   2222210             011346999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEec
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      |.|+|.+.+.    . ..+.|.|..
T Consensus        64 G~Y~C~a~n~----~-~~a~l~V~e   83 (84)
T 2lu7_A           64 GEYLCDAPQD----S-RIFLVSVEE   83 (84)
T ss_dssp             EEEEEECTTT----C-EEEEEEECC
T ss_pred             EEEEEEECCE----E-EEEEEEEEC
Confidence            9999988443    2 566777764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=94.14  Aligned_cols=98  Identities=29%  Similarity=0.596  Sum_probs=72.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI---   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---   78 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.|.+.+.|+|++..+.........              ......++.+.+   
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~i   74 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS--------------HRMLLPSGSLFFLRI   74 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSC--------------SEEECTTSCEEESSC
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcc--------------eeEEecCCcEEEEEE
Confidence            688888888999999999999999999999999999999887644211110              001112344443   


Q ss_pred             --eecccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         79 --ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        79 --~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                        .++ +..|+|.|+|.+.|..|...+..+.|.+..+.
T Consensus        75 ~~~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~~  111 (117)
T 2v9t_A           75 VHGRK-SRPDEGVYVCVARNYLGEAVSHDASLEVAAAA  111 (117)
T ss_dssp             CCBTT-BCSSCEEEEEEEEETTEEEECCCEEEEEC---
T ss_pred             EeCCC-CcCcCEEEEEEEEeCccceEeeeEEEEhhhhh
Confidence              356 78999999999999999888788888887653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=3.2e-14  Score=91.94  Aligned_cols=91  Identities=25%  Similarity=0.223  Sum_probs=74.2

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+..   ...|.|.++.. +|+|.|+|.+.|..+ ..+
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g-~~~   90 (114)
T 2cqv_A           13 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVENKLG-SRQ   90 (114)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEECSSC-EEE
T ss_pred             CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hcCEEEEEEEEECCC-cEE
Confidence            3556788999999999999999999999999998887666655543   34799999997 999999999999988 455


Q ss_pred             ceEEEEeecCCccccC
Q psy14532        195 QNVHISVTVPPKIAPF  210 (258)
Q Consensus       195 ~~~~l~v~~~p~~~~~  210 (258)
                      ..+.|.|...|..+..
T Consensus        91 ~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           91 AQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             CCEEEEEECSCSCCCC
T ss_pred             EEEEEEEECCCCCCCC
Confidence            6788888877764433

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.57  E-value=1.3e-14  Score=105.11  Aligned_cols=125  Identities=24%  Similarity=0.453  Sum_probs=87.1

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|+.++|.|.+.+.+  .+.+.|++..  ....                 ...++.+..+     .+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            446788999999999997754  5789999853  2110                 1234444322     379999999


Q ss_pred             cCCCCcEEEEEEEeCCCC--CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEECCEe
Q psy14532        174 KDHDRGVYWCTATNKQGR--SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGLP  245 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~  245 (258)
                      . +|+|.|.|.+.+..+.  .......|.|..    +|.+...+ ...+..|+.++|.|.+.+.+|.  +.|.|+++|..
T Consensus        88 ~-~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           88 S-EDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             G-GGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             h-hhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            8 9999999999986432  122345677764    23333333 3446789999999999655576  79999999987


Q ss_pred             c
Q psy14532        246 I  246 (258)
Q Consensus       246 l  246 (258)
                      +
T Consensus       166 ~  166 (220)
T 2fbj_H          166 I  166 (220)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.57  E-value=2.2e-14  Score=91.61  Aligned_cols=107  Identities=18%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceeccc-ceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGE-ARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +...+.+..+.+|++|.|.|.........+.|+|+....... ....+..+. .......+..|..+..+++|.|.++ +
T Consensus         3 l~i~~~p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~-~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nv-t   80 (111)
T 2qsq_A            3 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNR-QIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI-I   80 (111)
T ss_dssp             CEEEEESSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGG-EEEEEETTTTEEEECTTCCSCEEECTTSCEEECSC-C
T ss_pred             cEEEeccceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCc-EEEEEECCCcceecCcccCCcEEEecCCcEEEccC-c
Confidence            455666678999999999998533334479999975322110 111222221 1233344678888889999999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      .+|+|.|+|.+.+..+......+.|.|..+
T Consensus        81 ~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           81 QNDAGFYTLHVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             GGGCEEEEEEEEETTSCCEEEEEEEEEECC
T ss_pred             ccCCeEEEEEEEeCCCcEEEEEEEEEEecC
Confidence            999999999999987654447788887643

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.57  E-value=1.1e-14  Score=105.92  Aligned_cols=126  Identities=24%  Similarity=0.420  Sum_probs=86.3

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~~  173 (258)
                      ....+.+|++++|.|.+.+.+  .+.+.|+++.  ....                 ...++.+..     ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            346788999999999998765  6789999853  2110                 123344332     2479999999


Q ss_pred             cCCCCcEEEEEEEeCCC-----C--CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEE
Q psy14532        174 KDHDRGVYWCTATNKQG-----R--SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLK  241 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~  241 (258)
                      . +|+|.|.|.+.+..+     .  .....+.|.|..    +|.+........+..|+.++|.|.+.+.+|.+ .|.|++
T Consensus        88 ~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  166 (225)
T 1op3_H           88 V-EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  166 (225)
T ss_dssp             G-GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred             h-hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence            8 999999999998753     1  112345677765    23332222222456899999999996455776 999999


Q ss_pred             CCEec
Q psy14532        242 NGLPI  246 (258)
Q Consensus       242 ~g~~l  246 (258)
                      +|..+
T Consensus       167 ~~~~~  171 (225)
T 1op3_H          167 GALTS  171 (225)
T ss_dssp             TSCCT
T ss_pred             CCCcC
Confidence            98764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=1.8e-14  Score=105.68  Aligned_cols=122  Identities=16%  Similarity=0.269  Sum_probs=86.2

Q ss_pred             CCCcceecCCcEEEEeeeCccc----CceEEEEeCC--cccC------------CCcceEEecC---CeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP----IESITWQKGV--QQLP------------LNRRQKVFPN---GTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~~--~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~  177 (258)
                      +....+.+|+.++|.|.+.+.+    .+.+.|+++.  ....            ...++.+...   .+|.|.++.. +|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D   86 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA-DD   86 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCCh-hh
Confidence            4456788999999999998877    7799999953  2111            1123333221   2699999997 99


Q ss_pred             CcEEEEEEEeCCCCCccceEEEEeecCCc-----c-ccCCCCCccCCCCeeeEEEEeccCCC--CceeEEEEC
Q psy14532        178 RGVYWCTATNKQGRSSSQNVHISVTVPPK-----I-APFEFQPDLHSGDRAGVQCLVTKGDP--PLTISWLKN  242 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-----~-~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  242 (258)
                      +|.|+|.+.+..+........|.|..++.     + ...+....+.+|+.++|.|.+. +.|  .+.+.|+++
T Consensus        87 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~~~v~W~k~  158 (240)
T 1moe_A           87 VATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTAS-GFNIKDTYMHWVKQ  158 (240)
T ss_dssp             CEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEE-SSCGGGSCEEEEEE
T ss_pred             CEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEc-CccCCCCEEEEEEE
Confidence            99999999987654344556777766432     1 1224455788999999999994 655  468999995

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=92.02  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             CCcceeeceee--eecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQ--TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~--~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ||.|..++.+.  .+.+|++++|.|.+.+ |.+.+.|+|+|..+...   .++.+..             .....+|.|.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~---~~~~i~~-------------~~~~~~L~I~   66 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEES---DFVVLEN-------------EGPHRRLVLP   66 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCC---SSCEEEE-------------ETTEEEEEES
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeee---eeeeEEe-------------cCCeEEEEeC
Confidence            66676665554  4568999999999865 77899999999888654   2222210             0012369999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ ..+|+|.|+|.+.|.
T Consensus        67 ~v-~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           67 AT-QPSDGGEFQCVAGDE   83 (91)
T ss_dssp             SC-CGGGCSEEEEECSSC
T ss_pred             CC-ChhhcEEEEEEEcce
Confidence            99 999999999998654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.57  E-value=2.5e-14  Score=104.76  Aligned_cols=122  Identities=16%  Similarity=0.260  Sum_probs=84.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--ccc---------------CCCcceEEec----CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQL---------------PLNRRQKVFP----NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~---------------~~~~~~~~~~----~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|+.++|.|. .+.+.+.+.|+++.  ...               ....++.+..    ..+|.|.+++. +|
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~D   84 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP-SQ   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG-GG
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc-cc
Confidence            44567889999999999 66788899999952  110               1122333322    34799999998 99


Q ss_pred             CcEEEEEEEeCCCCC----ccceEEEEeecCC------------ccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEE
Q psy14532        178 RGVYWCTATNKQGRS----SSQNVHISVTVPP------------KIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK  241 (258)
Q Consensus       178 ~g~y~C~~~~~~~~~----~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  241 (258)
                      +|.|.|.+.+..+..    ......|.|...+            .+...+....+.+|+.++|.|.+ .+.|.+.+.|++
T Consensus        85 sG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~k  163 (238)
T 2p1y_A           85 TSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY-ENSAFDYFPWYQ  163 (238)
T ss_dssp             CEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC-CCTTCCEEEEEE
T ss_pred             CeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE-ecCCCCcEEEEE
Confidence            999999999875421    1234566666544            23333445568899999999999 577889999999


Q ss_pred             CC
Q psy14532        242 NG  243 (258)
Q Consensus       242 ~g  243 (258)
                      ++
T Consensus       164 ~~  165 (238)
T 2p1y_A          164 QF  165 (238)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.57  E-value=1.4e-14  Score=106.63  Aligned_cols=130  Identities=23%  Similarity=0.300  Sum_probs=86.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--Cc------------ccC---CC-cceEEec----CCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQ------------QLP---LN-RRQKVFP----NGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~------------~~~---~~-~~~~~~~----~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|+.++|.| ..+.+.+.+.|++.  +.            ...   .. .++.+..    +.+|.|.+++. +
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~   86 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTAL-E   86 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCG-G
T ss_pred             CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCH-h
Confidence            4456788999999999 65677889999982  11            100   00 3333332    23799999997 9


Q ss_pred             CCcEEEEEEEeCC---CCCccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEe
Q psy14532        177 DRGVYWCTATNKQ---GRSSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLP  245 (258)
Q Consensus       177 ~~g~y~C~~~~~~---~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~  245 (258)
                      |+|.|.|.+.+..   .........|.|..      +|.+... +....+..|+.++|.|.+.+.+|.+ .+.|+++|+.
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~  166 (245)
T 4ei6_B           87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (245)
T ss_dssp             GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEE
Confidence            9999999999632   11223445566653      3433322 2223455699999999996546655 8999999999


Q ss_pred             ccccc
Q psy14532        246 ILSAM  250 (258)
Q Consensus       246 l~~~~  250 (258)
                      +..+.
T Consensus       167 l~~~~  171 (245)
T 4ei6_B          167 VHSGV  171 (245)
T ss_dssp             ECTTE
T ss_pred             CCCCc
Confidence            97643

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=4.2e-14  Score=89.10  Aligned_cols=85  Identities=29%  Similarity=0.478  Sum_probs=70.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC-CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...+.....++.|.|.++.. +|+|.|+|.+.|..+. .+..+
T Consensus        15 p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~-~~~~~   92 (100)
T 2edj_A           15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRI-SDTGTYTCVATSSSGE-TSWSA   92 (100)
T ss_dssp             CCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCT-TTCCEEEEEEECSSCC-CBCCE
T ss_pred             cCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCc-ccCEEEEEEEEcCCCC-EEEEE
Confidence            455678899999999999999999999999988776 34455566778999999997 9999999999999884 46777


Q ss_pred             EEEeecCC
Q psy14532        198 HISVTVPP  205 (258)
Q Consensus       198 ~l~v~~~p  205 (258)
                      .|.|..+|
T Consensus        93 ~l~V~~~~  100 (100)
T 2edj_A           93 VLDVTESG  100 (100)
T ss_dssp             EEEEESCC
T ss_pred             EEEEecCC
Confidence            88877653

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=1.2e-14  Score=107.15  Aligned_cols=125  Identities=18%  Similarity=0.360  Sum_probs=86.6

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCCc--cc-----------------CCCcceEEec-----CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGVQ--QL-----------------PLNRRQKVFP-----NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~--~~-----------------~~~~~~~~~~-----~~~l~i~~~~  173 (258)
                      ....+.+|+.++|.|.+.+.|  .+.+.|+++..  ..                 ....++.+..     ..+|.|.++.
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            456788999999999998866  57899998431  11                 1123343332     2369999999


Q ss_pred             cCCCCcEEEEEEEeCCCC-CccceEEEEeecCC---------------ccccCCCCCccCCCCeeeEEEEeccCCCCcee
Q psy14532        174 KDHDRGVYWCTATNKQGR-SSSQNVHISVTVPP---------------KIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI  237 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~  237 (258)
                      . +|+|.|+|.+.+..+. .......|.|..++               .+...+....+.+|++++|.|.+ .+.|.+.+
T Consensus        90 ~-~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~v  167 (247)
T 2ghw_B           90 A-EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA-SQSVRSNL  167 (247)
T ss_dssp             G-GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE-SSCCTTCE
T ss_pred             H-HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe-CCCccceE
Confidence            8 9999999999987221 12234567776542               12222334568899999999999 57777899


Q ss_pred             EEEE--CCEec
Q psy14532        238 SWLK--NGLPI  246 (258)
Q Consensus       238 ~W~~--~g~~l  246 (258)
                      .|++  +|..+
T Consensus       168 ~W~k~~~g~~~  178 (247)
T 2ghw_B          168 AWYQQKPGQAP  178 (247)
T ss_dssp             EEEEECTTSCC
T ss_pred             EEEEECCCCCc
Confidence            9999  66544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.56  E-value=1e-14  Score=105.57  Aligned_cols=125  Identities=22%  Similarity=0.409  Sum_probs=85.4

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cc---c-C---------------CCcceEEec-----CCeEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQ---L-P---------------LNRRQKVFP-----NGTLLIEN  171 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~---~-~---------------~~~~~~~~~-----~~~l~i~~  171 (258)
                      ....+.+|+.++|.|.+.+.+  .+.+.|++++  ..   + .               ...++.+..     ..+|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            446788999999999998755  6799999853  11   0 0               012333322     12799999


Q ss_pred             cccCCCCcEEEEEEEeCCCCC--ccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCE
Q psy14532        172 VQKDHDRGVYWCTATNKQGRS--SSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGL  244 (258)
Q Consensus       172 ~~~~~~~g~y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~  244 (258)
                      ++. +|+|.|.|.+.+..+..  ......|.|..    +|.+...+....+.+|+.++|.|.+.+.+|.+ .|.|++++.
T Consensus        88 v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B           88 LRA-EDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             CCG-GGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCH-HHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            998 99999999999864321  11345666653    33333333233467899999999996455887 999999886


Q ss_pred             e
Q psy14532        245 P  245 (258)
Q Consensus       245 ~  245 (258)
                      .
T Consensus       167 ~  167 (220)
T 1pz5_B          167 S  167 (220)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.56  E-value=1.6e-14  Score=104.16  Aligned_cols=126  Identities=21%  Similarity=0.407  Sum_probs=86.2

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC----------------CCcceEEec-----CCeEEEEeccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP----------------LNRRQKVFP-----NGTLLIENVQK  174 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~  174 (258)
                      ....+.+|+.++|.|.+.+.+  .+.+.|+++.  ....                ...++.+..     +.+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            446788999999999998754  5789999853  2210                123444332     13799999997


Q ss_pred             CCCCcEEEEEEEeCCCC--CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEec
Q psy14532        175 DHDRGVYWCTATNKQGR--SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPI  246 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l  246 (258)
                       +|+|.|.|.+.+..+.  .......|.|..    +|.+...+....+..|+.++|.|.+.+.+|.+ .|.|+++|..+
T Consensus        88 -~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           88 -EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             -GGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             -ccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence             9999999999986421  122345677763    33333222233457899999999996555877 99999998764

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.56  E-value=1.1e-14  Score=104.45  Aligned_cols=124  Identities=16%  Similarity=0.241  Sum_probs=78.9

Q ss_pred             ecCCcEEEEeeeCccc----CceEEEEeCCcccCCCc--ceEEecCCeEEEEe---ccc--CCCCcEEEEEEEeCCCCC-
Q psy14532        125 IAGEPLYLGCPVAGYP----IESITWQKGVQQLPLNR--RQKVFPNGTLLIEN---VQK--DHDRGVYWCTATNKQGRS-  192 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~~----~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~---~~~--~~~~g~y~C~~~~~~~~~-  192 (258)
                      ..|+.+.|.|.+.+.+    ...|.|++++..+....  ......++.+.+..   +..  .+|+|.|+|.+.|..+.. 
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999998865    24999999987654321  11223345555432   222  145999999999986532 


Q ss_pred             ccceEEE--EeecCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEeccc
Q psy14532        193 SSQNVHI--SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  248 (258)
Q Consensus       193 ~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~  248 (258)
                      ....+.+  .+..+|.+...+.......|+.+.|.|.+.+.+|+ +.|.|++||..+..
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  154 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  154 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECC
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccC
Confidence            1112211  23445555443333222346679999999654665 59999999998864

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.56  E-value=1.4e-14  Score=103.51  Aligned_cols=109  Identities=19%  Similarity=0.286  Sum_probs=77.6

Q ss_pred             eecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      +.+|+.++|.|.+   |.+.+.|++++..+...    ...+++|.|.++.. +|+|.|+|.+.+.    .+..+.|.+..
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~----~~~~~~L~i~~v~~-~DsG~Y~C~~~~~----~s~~~~v~v~~   82 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL----TEDKKKWNLGSNAK-DPRGMYQCKGSQN----KSKPLQVYYRM   82 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE----ESSCCCEEEEEGGG-CCEEEEEEESSSS----CCCCEEEEEEC
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC----CCCCCeEEeCCCCc-CCCEEEEEEecCC----CCeeEEEEEEE
Confidence            4579999999998   77899999999876432    12456899999997 9999999996542    22335555541


Q ss_pred             -------------------------------CCccccCCCCCccC-CCCeeeEEEEeccCCCCceeEEEECCEecccc
Q psy14532        204 -------------------------------PPKIAPFEFQPDLH-SGDRAGVQCLVTKGDPPLTISWLKNGLPILSA  249 (258)
Q Consensus       204 -------------------------------~p~~~~~~~~~~~~-~g~~~~l~C~~~~~~p~~~~~W~~~g~~l~~~  249 (258)
                                                     ++.+..  ....+. +|+.++|.|.   +.|.+.+.|+++|..+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l~~~  155 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ--TPYKVSISGTTVILTCP---QYPGSEILWQHNDKNIGGD  155 (204)
T ss_dssp             ------------------------------------C--CCCEEEEETTEEEEECS---CCCSSCEEEEETTEEESCC
T ss_pred             eccccccccccccccccccccccccccccccccceec--CCceeeecCCcEEEEcC---CCCCCceEEEECCEECCCc
Confidence                                           111111  112344 8999999998   5788899999999988653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=108.42  Aligned_cols=129  Identities=23%  Similarity=0.351  Sum_probs=87.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC---------------CC-cceEEec----CCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP---------------LN-RRQKVFP----NGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~---------------~~-~~~~~~~----~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|+.++|.|.+. .+.+.+.|++.  +....               .. .++.+..    +.+|.|.+++. +
T Consensus        33 p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~  110 (268)
T 3pl6_D           33 PSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTER-G  110 (268)
T ss_dssp             CSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCG-G
T ss_pred             CCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCc-c
Confidence            4456788999999999986 46779999982  22110               00 3344433    45799999997 9


Q ss_pred             CCcEEEEEEEeCC-CCCccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecc
Q psy14532        177 DRGVYWCTATNKQ-GRSSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPIL  247 (258)
Q Consensus       177 ~~g~y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~  247 (258)
                      |+|.|.|.+.+.. .........|.|..      +|.+... +....+..|+.++|.|.+.+.+|++ .+.|+++|+.+.
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEEC
T ss_pred             cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECC
Confidence            9999999999742 11223445566664      3433322 2223355699999999996445555 899999999986


Q ss_pred             cc
Q psy14532        248 SA  249 (258)
Q Consensus       248 ~~  249 (258)
                      .+
T Consensus       191 ~~  192 (268)
T 3pl6_D          191 SG  192 (268)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.56  E-value=2.6e-15  Score=112.45  Aligned_cols=171  Identities=12%  Similarity=0.117  Sum_probs=53.2

Q ss_pred             ceeeeecCCCceEEEEEEeec-CCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN-PTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      +....+.+|+.++|.|.+.+. |..  .|.|+|+++.+.....     ..              .....+|.+... +.+
T Consensus        93 ~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-----~~--------------~~~~~~l~~~~~-~~D  152 (291)
T 1mq8_A           93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-----VG--------------EPAEVTTTVLVR-RDH  152 (291)
T ss_dssp             CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-----CB--------------TTEEEEEECCCS-SSC
T ss_pred             cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-----CC--------------CCceEEEEeeee-ecc
Confidence            333458899999999999874 443  5899999877654310     00              001224555555 666


Q ss_pred             CceEEEEEEEeCCcc-------eeeceEEEEEecCCeec--cCCCcceecCCcEEEEeeeCcccCc---eEEEEeCCccc
Q psy14532         86 DRGVYWCTATNKQGR-------SSSQNVHISVTGAPFVR--PMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKGVQQL  153 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~-------~~~~~~~l~v~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~---~i~W~~~~~~~  153 (258)
                      |.+.|+|.|.+..+.       ..+....|.|..+|...  ......+.+|+.+.|.|.+.|.+++   .+.|++++..+
T Consensus       153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l  232 (291)
T 1mq8_A          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL  232 (291)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------------
T ss_pred             CCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEec
Confidence            777999999986441       12366678887664221  1112357789999999999986443   69999999887


Q ss_pred             CCCcceEEecCCeEEEEec---ccC-CCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532        154 PLNRRQKVFPNGTLLIENV---QKD-HDRGVYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       154 ~~~~~~~~~~~~~l~i~~~---~~~-~~~g~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      ......   ..+.+.+...   ..+ ++.+.|+|.+.+... .......|.|+.
T Consensus       233 ~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~l~v~~  282 (291)
T 1mq8_A          233 NPTVTY---GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIYS  282 (291)
T ss_dssp             ------------------------------------------------------
T ss_pred             Cceeee---cCCeEEEEEecceeEcCCCCEEEEEEEEeCCc-ceEEEEEEEEEc
Confidence            642111   1223332222   231 345678898886432 233455566654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.56  E-value=2.9e-14  Score=104.54  Aligned_cols=130  Identities=22%  Similarity=0.405  Sum_probs=88.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--ccC---------------CCcceEEec----CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QLP---------------LNRRQKVFP----NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~~---------------~~~~~~~~~----~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|+.++|.|.+.. +.+.+.|+++..  ...               ...++.+..    +.+|.|.+++. +|
T Consensus         6 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~-~D   83 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP-SQ   83 (238)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG-GG
T ss_pred             CCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc-cc
Confidence            34567889999999999853 577999998542  110               122333322    23799999997 99


Q ss_pred             CcEEEEEEEeCCC----CCccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEe
Q psy14532        178 RGVYWCTATNKQG----RSSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLP  245 (258)
Q Consensus       178 ~g~y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~  245 (258)
                      +|.|.|.+.+..+    ........|.|..      +|.+... +....+..|+.++|.|.+.+.+|. +.+.|++||+.
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~  163 (238)
T 1bec_A           84 TSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE  163 (238)
T ss_dssp             CEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEE
T ss_pred             CEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEE
Confidence            9999999998632    0112334566654      3444332 233446689999999999644575 49999999999


Q ss_pred             ccccc
Q psy14532        246 ILSAM  250 (258)
Q Consensus       246 l~~~~  250 (258)
                      +..+.
T Consensus       164 ~~~~~  168 (238)
T 1bec_A          164 VHSGV  168 (238)
T ss_dssp             ECTTE
T ss_pred             CCCce
Confidence            87543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.56  E-value=2.4e-14  Score=105.17  Aligned_cols=122  Identities=17%  Similarity=0.198  Sum_probs=83.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--ccC------------CCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +....+.+|++++|.|.+.+.+.+.+.|+++..  ...            ...++.+..   ..+|.|.++.. +|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y   86 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET-EDFGMY   86 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh-HHCEEE
Confidence            445678899999999999988888999998531  110            122333321   23699999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeecCCc-------------cccCCCCCccCCCCeeeEEEEeccCCC--CceeEEEEC
Q psy14532        182 WCTATNKQGRSSSQNVHISVTVPPK-------------IAPFEFQPDLHSGDRAGVQCLVTKGDP--PLTISWLKN  242 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  242 (258)
                      .|.+.+..+........|.|..+|.             ....+....+.+|++++|.|.+. +.|  .+.+.|+++
T Consensus        87 ~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W~k~  161 (242)
T 2znx_A           87 FCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVT-GDSITSDYXSXIRK  161 (242)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEE-SSCGGGSCEEEEEE
T ss_pred             EEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEE-ccccCCcceeeEee
Confidence            9999987542233456677766542             11112234688999999999994 554  578999984

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.56  E-value=2.5e-14  Score=103.76  Aligned_cols=128  Identities=22%  Similarity=0.376  Sum_probs=87.3

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~~  173 (258)
                      ..+.+.+|+.++|.|.+.+.+  .+.+.|+|+.  ....                 ...++.+..     +.+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            456788999999999997654  4789999853  2110                 123444332     2379999999


Q ss_pred             cCCCCcEEEEEEEeCCC----C-CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEE-C
Q psy14532        174 KDHDRGVYWCTATNKQG----R-SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLK-N  242 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~----~-~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~-~  242 (258)
                      . +|+|.|.|.+.+..+    . .....+.|.|..    +|.+........+..|+.++|.|.+.+.+|.+ .+.|++ +
T Consensus        88 ~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           88 A-EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             G-GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             H-HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            8 999999999998642    0 112345677763    33333222223457899999999996555776 999999 9


Q ss_pred             CEeccc
Q psy14532        243 GLPILS  248 (258)
Q Consensus       243 g~~l~~  248 (258)
                      |+.+..
T Consensus       167 g~~l~~  172 (223)
T 1dee_B          167 NSDISS  172 (223)
T ss_dssp             SCBCSC
T ss_pred             CCccce
Confidence            988754

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.56  E-value=5.2e-14  Score=90.47  Aligned_cols=100  Identities=23%  Similarity=0.339  Sum_probs=72.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.|...+.+..+.+|++++|.|.+.+.  +.+.+.|+|++..+...........        ..........+++|.|.
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~L~I~   81 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL--------RAQGGELMEYTTILRLR   81 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEET--------TGGGSSCEEEEEEEEEC
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeee--------eccCCCccccceEEEEe
Confidence            6888888888999999999999999865  4579999999988764311000011        00101111224689999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ++ +..|+|.|+|.+.|..|...+..+.|.|
T Consensus        82 ~v-~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           82 NV-EFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             SC-CGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cc-ccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            99 9999999999999998875446677765

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.55  E-value=1.9e-14  Score=105.61  Aligned_cols=130  Identities=19%  Similarity=0.365  Sum_probs=86.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--cc---------------CCCcceEEec----CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL---------------PLNRRQKVFP----NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~---------------~~~~~~~~~~----~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|+.+.|.|.+.+ +.+.+.|++...  ..               ....++.+..    +.+|.|.+++. +|
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~D   86 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL-ED   86 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG-GG
T ss_pred             cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCCh-hH
Confidence            44567889999999999876 777999998321  00               0112333322    33699999998 99


Q ss_pred             CcEEEEEEEeC--CCCCccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEecc
Q psy14532        178 RGVYWCTATNK--QGRSSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLPIL  247 (258)
Q Consensus       178 ~g~y~C~~~~~--~~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~l~  247 (258)
                      +|.|.|.+.+.  ..........|.|..      +|.+... +....+..|+.++|.|.+.+.+|.+ .+.|+++|+.+.
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~  166 (240)
T 3q5y_A           87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH  166 (240)
T ss_dssp             CEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECc
Confidence            99999999832  111223445566653      3333322 2223455689999999996546765 899999999986


Q ss_pred             ccc
Q psy14532        248 SAM  250 (258)
Q Consensus       248 ~~~  250 (258)
                      .+.
T Consensus       167 ~~~  169 (240)
T 3q5y_A          167 SGV  169 (240)
T ss_dssp             TTE
T ss_pred             CcE
Confidence            543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=7.7e-14  Score=90.70  Aligned_cols=100  Identities=25%  Similarity=0.371  Sum_probs=76.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC-CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      .+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..+.....+++|.|.++.. +|+|.|+|.+.|..+. ....
T Consensus        14 ~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~-~~~~   91 (118)
T 2eo9_A           14 GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKL-GDTGRYTCIASTPSGE-ATWS   91 (118)
T ss_dssp             CCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCG-GGCCCEEEEEECSSCE-EEEE
T ss_pred             CCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCc-CCCEEEEEEEEcCCCc-EEEE
Confidence            35567788999999999999999999999999988754 4555666788999999998 9999999999999874 4555


Q ss_pred             EEEEeecCCcc--ccCCCCCccCCC
Q psy14532        197 VHISVTVPPKI--APFEFQPDLHSG  219 (258)
Q Consensus       197 ~~l~v~~~p~~--~~~~~~~~~~~g  219 (258)
                      +.|.|..++..  ...+....+..|
T Consensus        92 ~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           92 AYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             CCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             EEEEEEeCCCCccCCCCCCCccCCC
Confidence            66777766543  333334444444

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.55  E-value=3.1e-14  Score=106.73  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcc-----c---------CCCcceEEecC---CeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ-----L---------PLNRRQKVFPN---GTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~-----~---------~~~~~~~~~~~---~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|+.++|.|.+.+.|.+.+.|++++..     +         ....++.+..+   .+|.|.++.. +|+|.|
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y   97 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP-EDFATY   97 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh-hhCEEE
Confidence            4556788999999999999888889999985421     1         01223333222   2799999997 999999


Q ss_pred             EEEEEeCCCCCccceEEEEeecCCc-------------ccc-CCCCCccCCCCeeeEEEEeccCCC--CceeEEEEC
Q psy14532        182 WCTATNKQGRSSSQNVHISVTVPPK-------------IAP-FEFQPDLHSGDRAGVQCLVTKGDP--PLTISWLKN  242 (258)
Q Consensus       182 ~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~-~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  242 (258)
                      .|.+.+..+........|.|..+|.             +.. .+....+.+|+.++|.|.+. +.|  .+.+.|+++
T Consensus        98 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W~k~  173 (276)
T 3auv_A           98 YCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAAS-GFTISDYWIHWVRQ  173 (276)
T ss_dssp             EEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEE-SSCGGGSEEEEEEE
T ss_pred             EEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEec-CccCCCCEEEEEEc
Confidence            9999987543334446677765432             111 23456788999999999995 544  589999995

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.55  E-value=4.8e-14  Score=103.62  Aligned_cols=128  Identities=23%  Similarity=0.326  Sum_probs=86.9

Q ss_pred             CCCcceecCCcEEEEeeeCcc--cCceEEEEeCC--cccC-----------------CCcceEEe-----cCCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQLP-----------------LNRRQKVF-----PNGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~~-----------------~~~~~~~~-----~~~~l~i~~~  172 (258)
                      +..+.+.+|+.++|.|.+.+.  +...+.|+++.  ....                 ...++.+.     .+.+|.|.++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCC
Confidence            445678899999999998764  56789999843  2110                 12333332     1346999999


Q ss_pred             ccCCCCcEEEEEEEeCCC-C-----CccceEEEEeecC-------CccccC-CCCCccCCCCeeeEEEEeccCCCC-cee
Q psy14532        173 QKDHDRGVYWCTATNKQG-R-----SSSQNVHISVTVP-------PKIAPF-EFQPDLHSGDRAGVQCLVTKGDPP-LTI  237 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~  237 (258)
                      +. +|+|.|.|.+.+... .     .......|.|...       |.+.+. +....+..|+.++|.|.+.+.+|. +.+
T Consensus        88 ~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v  166 (242)
T 1hxm_B           88 EK-QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI  166 (242)
T ss_dssp             CG-GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred             Cc-ccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence            97 999999999987631 1     1123456777653       333332 223345679999999999655575 799


Q ss_pred             EEEECCE-ecc
Q psy14532        238 SWLKNGL-PIL  247 (258)
Q Consensus       238 ~W~~~g~-~l~  247 (258)
                      .|+++|. .+.
T Consensus       167 ~W~~~~~~~l~  177 (242)
T 1hxm_B          167 HWEEKKSNTIL  177 (242)
T ss_dssp             EEEESSSCCCC
T ss_pred             EEEcCCCEeec
Confidence            9999987 564

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.55  E-value=1.9e-14  Score=106.48  Aligned_cols=122  Identities=17%  Similarity=0.335  Sum_probs=84.8

Q ss_pred             CCCcceecCCcEEEEeeeCcc--cCceEEEEeCC--cccC-----------------CCcceEEecC-----CeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQLP-----------------LNRRQKVFPN-----GTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~~~  172 (258)
                      +....+.+|++++|.|.+.+.  +.+.+.|++..  ..+.                 ...++.+..+     .+|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            445678899999999999874  36799999832  1110                 1123333221     23999999


Q ss_pred             ccCCCCcEEEEEEEeCCCCCccceEEEEeec---------------CCccccCCCCCccCCCCeeeEEEEeccCCCCc--
Q psy14532        173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTV---------------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL--  235 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--  235 (258)
                      +. +|+|.|.|.+.+..+........|.|..               ++.+...+....+.+|++++|.|.+ .+.|.+  
T Consensus        88 ~~-~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~  165 (253)
T 3uzq_A           88 TS-GDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA-SENVDRYG  165 (253)
T ss_dssp             CG-GGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE-SSCCEETT
T ss_pred             Cc-ccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe-cCccccCC
Confidence            97 9999999999986543334556677764               2334444555678899999999999 466665  


Q ss_pred             --eeEEEEC
Q psy14532        236 --TISWLKN  242 (258)
Q Consensus       236 --~~~W~~~  242 (258)
                        .+.|+++
T Consensus       166 ~~~v~W~r~  174 (253)
T 3uzq_A          166 NSFMHWYQQ  174 (253)
T ss_dssp             EECEEEEEE
T ss_pred             CcEEEEEEE
Confidence              8999984

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.55  E-value=6.9e-14  Score=90.56  Aligned_cols=92  Identities=25%  Similarity=0.526  Sum_probs=73.3

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC-CcceEEecCC----eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~~~----~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ++..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+..++    +|.|.++.. +|+|.|+|.+.|..
T Consensus        18 f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~   96 (116)
T 2kkq_A           18 FIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK-KDAGWYTVSAVNEA   96 (116)
T ss_dssp             BSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECG-GGCEEEEEEEEETT
T ss_pred             EEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCc-ccCEEEEEEEEcCC
Confidence            44456677899999999999999999999999999987764 3444443332    799999998 99999999999998


Q ss_pred             CCCccceEEEEeecCCccc
Q psy14532        190 GRSSSQNVHISVTVPPKIA  208 (258)
Q Consensus       190 ~~~~~~~~~l~v~~~p~~~  208 (258)
                      +. .+..+.|.|..+|...
T Consensus        97 G~-~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           97 GV-TTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EE-EEEEEEEEEECCSCCC
T ss_pred             Ce-EEEEEEEEEeCCCCCC
Confidence            74 5567888888777543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.55  E-value=2e-14  Score=90.43  Aligned_cols=83  Identities=29%  Similarity=0.474  Sum_probs=66.2

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ++.+...   .+|.|.++.. +|+|.|+|.|.|..|. 
T Consensus        11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-   88 (100)
T 3knb_A           11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK-QDGGLYTLSLGNEFGS-   88 (100)
T ss_dssp             CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCG-GGCEEEEEEEEETTEE-
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCc-cCCEEEEEEEEECCCE-
Confidence            3456778999999999999999999999999998876543  3333332   3699999997 9999999999999884 


Q ss_pred             ccceEEEEee
Q psy14532        193 SSQNVHISVT  202 (258)
Q Consensus       193 ~~~~~~l~v~  202 (258)
                      .+..+.|.|.
T Consensus        89 ~~~~~~l~V~   98 (100)
T 3knb_A           89 DSATVNIHIR   98 (100)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4566667664

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=108.08  Aligned_cols=130  Identities=22%  Similarity=0.391  Sum_probs=88.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC-----------------CCcceEEec----CCeEEEEecccC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP-----------------LNRRQKVFP----NGTLLIENVQKD  175 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~-----------------~~~~~~~~~----~~~l~i~~~~~~  175 (258)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|+++.  ....                 ...++.+..    +.+|.|.+++. 
T Consensus        31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-  109 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHP-  109 (279)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCG-
T ss_pred             CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCc-
Confidence            34567889999999999987788899999853  1110                 123333332    23799999997 


Q ss_pred             CCCcEEEEEEEeCCC----C-CccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCC-ceeEEEEC
Q psy14532        176 HDRGVYWCTATNKQG----R-SSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKN  242 (258)
Q Consensus       176 ~~~g~y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~  242 (258)
                      +|+|.|.|.+.+..+    . .......|.|..      +|.+... +....+..|+.++|.|.+.+.+|+ +.|.|++|
T Consensus       110 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~  189 (279)
T 2wbj_D          110 EDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  189 (279)
T ss_dssp             GGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEET
T ss_pred             cCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            999999999998421    0 112334566654      3433322 112234468999999999645565 79999999


Q ss_pred             CEecccc
Q psy14532        243 GLPILSA  249 (258)
Q Consensus       243 g~~l~~~  249 (258)
                      |+.+..+
T Consensus       190 g~~l~~~  196 (279)
T 2wbj_D          190 GKEVHSG  196 (279)
T ss_dssp             TEECCTT
T ss_pred             CEECCCC
Confidence            9998754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.54  E-value=5.7e-14  Score=88.47  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             CCcceeecee-eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...+.+ ..+.+|++++|.|.+. .|.+.+.|+|++..+...   .++.+..             .....+|.|.+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~---~~~~~~~-------------~~~~~~L~I~~   69 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS---TKYIFEH-------------KGCQRILFINN   69 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB---TTEEEEE-------------ETTEEEEEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC---CCEEEEe-------------cCCEEEEEEcC
Confidence            6888888877 5788999999999998 688899999998877543   1222110             00123699999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      + ..+|+|.|+|.+    +... ..+.|.|..+|
T Consensus        70 ~-~~~D~G~Y~C~a----g~~~-~~~~l~V~~~P   97 (100)
T 2yuv_A           70 C-QMTDDSEYYVTA----GDEK-CSTELFVRSGP   97 (100)
T ss_dssp             E-CTTTCCEEEEEE----TTEE-EEEEEEECCSC
T ss_pred             C-CcCcCEEEEEEE----CCce-EEEEEEEecCC
Confidence            9 999999999999    3344 66788887765

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.54  E-value=5.2e-14  Score=104.29  Aligned_cols=121  Identities=17%  Similarity=0.383  Sum_probs=84.4

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|++++|.|.+.+.+  .+.+.|++..  ....                 ...++.+..+     .+|.|.++.
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            445688999999999988754  6799999842  1110                 1123333221     249999999


Q ss_pred             cCCCCcEEEEEEEeCCC---CCccceEEEEeec----------------CCccccCCCCCccCCCCeeeEEEEeccCCCC
Q psy14532        174 KDHDRGVYWCTATNKQG---RSSSQNVHISVTV----------------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP  234 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  234 (258)
                      . +|+|.|.|.+.+...   ........|.|..                +|.+...+....+.+|++++|.|.+ .+.|.
T Consensus        90 ~-~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~  167 (256)
T 3umt_A           90 S-EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRA-SQDIG  167 (256)
T ss_dssp             G-GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEE-SSCCT
T ss_pred             c-ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEE-ecCCC
Confidence            7 999999999998721   1223456677764                3444444555678899999999999 57777


Q ss_pred             ceeEEEEC
Q psy14532        235 LTISWLKN  242 (258)
Q Consensus       235 ~~~~W~~~  242 (258)
                      +.+.|++.
T Consensus       168 ~~v~W~k~  175 (256)
T 3umt_A          168 SNLNWLQQ  175 (256)
T ss_dssp             TCEEEEEE
T ss_pred             cEEEEEEE
Confidence            89999983

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.54  E-value=5.5e-14  Score=88.19  Aligned_cols=82  Identities=26%  Similarity=0.385  Sum_probs=63.4

Q ss_pred             eeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ..+..+.+.+|++++|.|.+. +.|.+.+.|+|++......                     .....+++|.|.++ +.+
T Consensus        15 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~---------------------~~~~~~~~L~i~~v-~~~   72 (98)
T 1gl4_B           15 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---------------------RAMDFNGILTIRNV-QPS   72 (98)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---------------------TEEEETTEEEECSC-CGG
T ss_pred             eCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc---------------------eeecCCCEEEEeCC-Chh
Confidence            345677899999999999998 5788899999974332211                     01123668999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |+|.|+|.+.|..|... ..+.|.|.
T Consensus        73 D~G~Y~C~a~n~~g~~~-~~~~l~V~   97 (98)
T 1gl4_B           73 DAGTYVCTGSNMFAMDQ-GTATLHVQ   97 (98)
T ss_dssp             GCEEEEEEEECSSCEEE-EEEEEEEC
T ss_pred             hCEEEEEEecCCCCccc-cEEEEEEe
Confidence            99999999999988766 66777664

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.54  E-value=4.6e-14  Score=90.22  Aligned_cols=99  Identities=23%  Similarity=0.375  Sum_probs=63.9

Q ss_pred             EEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe-cCCeEEEEecccCCCCcEEEE
Q psy14532        106 VHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-PNGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       106 ~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~C  183 (258)
                      +.|.+..+|.+. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+......... .++.|.|.++.. +|+|.|+|
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C   81 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRK-EDEGLYTC   81 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCG-GGCEEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCc-ccCEEEEE
Confidence            345555455433 456678889999999999999999999999999887665554443 456899999997 99999999


Q ss_pred             EEEeCCCCCccceEEEEeecCCc
Q psy14532        184 TATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      .+.|..+. ....+.|.|..+|.
T Consensus        82 ~a~n~~g~-~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           82 QACSVLGC-AKVEAFFIIEGAQE  103 (108)
T ss_dssp             EEC----C-EEEEEEEEEEC---
T ss_pred             EEEeCCCc-eEEEEEEEEeCCCc
Confidence            99998874 55667888877664

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.54  E-value=1.6e-14  Score=105.15  Aligned_cols=126  Identities=22%  Similarity=0.395  Sum_probs=83.8

Q ss_pred             CCcceecCCcEEEEeeeCcccC----ceEEEEeCC--cccC----------------CCcceEEec-----CCeEEEEec
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPI----ESITWQKGV--QQLP----------------LNRRQKVFP-----NGTLLIENV  172 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~----~~i~W~~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~  172 (258)
                      ....+.+|+.++|.|.+.+.+.    +.+.|+++.  ....                ...++.+..     +.+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4467889999999999987653    789999853  2210                123344332     257999999


Q ss_pred             ccCCCCcEEEEEEEeCCC------C--CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEE
Q psy14532        173 QKDHDRGVYWCTATNKQG------R--SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISW  239 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  239 (258)
                      +. +|+|.|.|.+.+..+      .  .......|.|..    +|.+...+....+..|+.++|.|.+.+.+|.+ .|.|
T Consensus        88 ~~-~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W  166 (228)
T 3bae_H           88 DT-ADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  166 (228)
T ss_dssp             CG-GGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             Cc-ccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence            98 999999999998643      1  112335677763    33333222223457899999999996555776 9999


Q ss_pred             EECCEec
Q psy14532        240 LKNGLPI  246 (258)
Q Consensus       240 ~~~g~~l  246 (258)
                      +++|..+
T Consensus       167 ~~~~~~~  173 (228)
T 3bae_H          167 NSGSLSS  173 (228)
T ss_dssp             GGGTCCT
T ss_pred             eeCCccc
Confidence            9998764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3e-14  Score=89.59  Aligned_cols=86  Identities=23%  Similarity=0.448  Sum_probs=67.0

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ...+..+.+.+|++++|.|.+.+.| +.+.|+|++..+...   .+..+                 ..++|.|.++ +..
T Consensus         7 ~~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~---~~~~~-----------------~~~~L~i~~v-~~~   64 (99)
T 2cr3_A            7 GVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAES---NRTRI-----------------TGEEVEVQDS-VPA   64 (99)
T ss_dssp             SCCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCC---SSEEE-----------------CSSEEEETTC-CTT
T ss_pred             CCCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCC---CcEEE-----------------ECCEEEEccC-CHH
Confidence            3456778899999999999998876 799999998766443   11111                 2468999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      |+|.|+|.+.|..+... ..+.|.|...+
T Consensus        65 D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~   92 (99)
T 2cr3_A           65 DSGLYACVTSSPSGSDT-TYFSVNVSDAL   92 (99)
T ss_dssp             TCEEEEEEEEETTEEEE-EEEEECBCSCC
T ss_pred             HCEEEEEEEEeCCceEE-EEEEEEEecCC
Confidence            99999999999988765 67777776543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.6e-14  Score=88.75  Aligned_cols=84  Identities=21%  Similarity=0.343  Sum_probs=70.1

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ..+....+.+|+.+.|.|.+  .|.+.+.|++++..+....++.+..++   .|.|.++.. +|+|.|+|.+.|.   ..
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~---~~   85 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALT-EDEGDYVFAPDAY---NV   85 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCG-GGCSEEEEEESSS---CC
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCCh-hhCEEEEEEEcCC---Ce
Confidence            34567789999999999999  688899999999998877777766554   699999998 9999999999997   34


Q ss_pred             cceEEEEeecCCc
Q psy14532        194 SQNVHISVTVPPK  206 (258)
Q Consensus       194 ~~~~~l~v~~~p~  206 (258)
                      +....|.|..+|.
T Consensus        86 ~~~a~L~V~~~P~   98 (100)
T 2yuz_A           86 TLPAKVHVISGPS   98 (100)
T ss_dssp             CEEEEEEEECCSC
T ss_pred             eEEEEEEEeCCCC
Confidence            5677888887764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.53  E-value=1.1e-13  Score=87.62  Aligned_cols=98  Identities=19%  Similarity=0.317  Sum_probs=70.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||+|..-.   ....|+.+.|.|.+.|.|.|.+.|+|+|..+...... ...+..          .......++|.|.++
T Consensus         4 pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~-~~~~~~----------~~~~~~~~~L~I~~v   69 (103)
T 1wwb_X            4 APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYI-CTKIHV----------TNHTEYHGCLQLDNP   69 (103)
T ss_dssp             CCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSE-EEEEEE----------ECSSEEEEEEEEESC
T ss_pred             CCEEEecc---CceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcE-eEEEEe----------cCCcEEEEEEEECCC
Confidence            67763221   1356889999999999999999999999887654110 010000          000112346999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       ...|+|.|+|.+.|..|... ..+.|.|...|.
T Consensus        70 -~~~D~G~Y~C~A~N~~G~~~-~~~~l~V~~~P~  101 (103)
T 1wwb_X           70 -THMNNGDYTLIAKNEYGKDE-KQISAHFMGWPG  101 (103)
T ss_dssp             -CGGGCEEEEEEEECSSCEEE-EEEEECCSCCCC
T ss_pred             -CcccCEEEEEEEEeCCCcEe-EEEEEEECCCCC
Confidence             99999999999999999877 888888877654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=3.7e-14  Score=89.87  Aligned_cols=92  Identities=18%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |+.|...+.++.+.+|++++|.|.+.+ +.+.+.|+|++..+...... ++.+.             ......+|.|.++
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~-~~~~~-------------~~~~~~~L~I~~~   71 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKS-RYRIR-------------VEGKKHILIIEGA   71 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTC-SEEEE-------------EETTEEEEEEEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCce-EEEEE-------------EcCCEEEEEECCC
Confidence            344778888999999999999999977 66899999999887654211 11111             0001247999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                       +.+|+|.|+|.+.|    . ...+.|.|..++
T Consensus        72 -~~~D~G~Y~C~a~n----~-~~~~~l~V~~~p   98 (103)
T 1x44_A           72 -TKADAAEYSVMTTG----G-QSSAKLSVDLKS   98 (103)
T ss_dssp             -CTTTCSEEEEEETT----E-EEEEEEEEECCC
T ss_pred             -CcccCEEEEEEECC----C-cEEEEEEEeCCC
Confidence             99999999999976    2 366777887654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.53  E-value=6.3e-14  Score=104.02  Aligned_cols=123  Identities=17%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccCC----C-------------cceEE-----ecCCeEEEEeccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLPL----N-------------RRQKV-----FPNGTLLIENVQK  174 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~~----~-------------~~~~~-----~~~~~l~i~~~~~  174 (258)
                      +..+.+.+|++++|.|.+.+.+.+.+.|++..  .....    .             .+...     ....+|.|.+++.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   88 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE   88 (259)
T ss_dssp             --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred             CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence            45577899999999999998888899999832  11100    0             01111     1234699999998


Q ss_pred             CCCCcEEEEEEEeCCCC--CccceEEEEeecC-----------------CccccCCCCCccCCCCeeeEEEEeccCCCCc
Q psy14532        175 DHDRGVYWCTATNKQGR--SSSQNVHISVTVP-----------------PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL  235 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  235 (258)
                       +|+|.|.|.+.+..+.  .......|.|..+                 |.+...+....+.+|++++|.|.+....|.+
T Consensus        89 -~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  167 (259)
T 3omz_A           89 -NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSY  167 (259)
T ss_dssp             -GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSC
T ss_pred             -ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCc
Confidence             9999999999986542  2234456666653                 2334445556788999999999985445789


Q ss_pred             eeEEEEC
Q psy14532        236 TISWLKN  242 (258)
Q Consensus       236 ~~~W~~~  242 (258)
                      .+.|++.
T Consensus       168 ~v~W~k~  174 (259)
T 3omz_A          168 YIFWYKR  174 (259)
T ss_dssp             EEEEEEE
T ss_pred             eEEEeee
Confidence            9999984

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=91.45  Aligned_cols=91  Identities=19%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|...+.++.+.+|++++|.|.+.+ +.+.+.|+|++..+...   .++.+..             .....+|.|.++
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~---~~~~~~~-------------~~~~~~L~I~~v   70 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS---QKYDVVC-------------EGTMAMLVIRGA   70 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCS---SSEEEEE-------------ETTEEEEEESSC
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCC---CCEEEEE-------------CCCEEEEEECCC
Confidence            678888889999999999999999987 77799999998877543   1221110             001226999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       ..+|+|.|+|.+.|.     ...+.|.|..+|.
T Consensus        71 -~~~D~G~Y~C~a~n~-----~~~~~l~V~~~p~   98 (103)
T 2edf_A           71 -SLKDAGEYTCEVEAS-----KSTASLHVEEKAS   98 (103)
T ss_dssp             -CTTTCSEEEEECSSC-----EEEEEEEECCCSS
T ss_pred             -CcccCEEEEEEEccC-----CcEEEEEEeCCCC
Confidence             999999999999882     3677888876653

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=91.50  Aligned_cols=92  Identities=11%  Similarity=0.207  Sum_probs=68.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.|...+.++.+.+|++++|.|.+.+.+. +.+.|+|+|..+...   .++.+.             ......+|.|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~---~r~~~~-------------~~~~~~~L~I~~   71 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS---SRFQAT-------------RQGRKYILVVRE   71 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC---SSCEEE-------------EETTEEEEEECS
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC---CCEEEE-------------EcCCEEEEEECC
Confidence            567888889999999999999999988764 479999999877544   222111             000123799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      + +.+|+|.|+|.+.+.    . ..+.|.|..+|.
T Consensus        72 v-~~~D~G~Y~C~a~~~----~-~~a~L~V~~~p~  100 (104)
T 2eny_A           72 A-APSDAGEVVFSVRGL----T-SKASLIVRERSG  100 (104)
T ss_dssp             C-CTTTCSCEEEEETTE----E-EEECEEEECCCS
T ss_pred             C-CHHHCEEEEEEECCe----e-EEEEEEEeCCCc
Confidence            9 999999999987442    2 667788887654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.53  E-value=5.4e-14  Score=89.87  Aligned_cols=102  Identities=17%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.+...+.++.+.+|++++|.|.+.+.+.+.+.|++++. .+....   .......     ++........+.+|.|.+
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~-----r~~~~~~~~~~~~L~I~~   77 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDD---KKALRDN-----RIELVRASWHELSISVSD   77 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETT---EECSCCT-----TEEEEEESSSEEEEEECS
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcC---CcccccC-----cEEEeecCCCcEEEEECC
Confidence            4677888899999999999999999998888999999764 221110   0000000     000000001356799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      + +.+|+|.|+|.+.+ .+... ..+.|.|..+|
T Consensus        78 v-~~~D~G~Y~C~~~n-~~~~~-~~~~L~V~~~P  108 (108)
T 3m45_A           78 V-SLSDEGQYTCSLFT-MPVKT-SKAYLTVLGVP  108 (108)
T ss_dssp             C-CGGGCEEEEEEECS-SSCEE-EEEEEEEECCC
T ss_pred             C-ChhHCeEEEEEEEc-CCCcE-EEEEEEEEcCC
Confidence            9 99999999999999 55554 77888887654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.52  E-value=2.7e-14  Score=91.01  Aligned_cols=91  Identities=15%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|+++.|.|.+.+.+.+ +.|+|++..+...   .++.+.             ......+|.|.+
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~---~~~~~~-------------~~~~~~~L~I~~   69 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS---KRITIS-------------HVGRFHKLVIDD   69 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC---SSCEEE-------------EETTEEEEEESS
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC---CCEEEE-------------EeCCEEEEEECC
Confidence            37888899999999999999999999987776 9999998877543   121111             000123799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      + +.+|+|.|+|.+.|..  .. ..+.|.|..
T Consensus        70 v-~~~D~G~Y~C~a~n~~--~~-~~~~l~V~~   97 (106)
T 2dlt_A           70 V-RPEDEGDYTFVPDGYA--LS-LSAKLNFLE   97 (106)
T ss_dssp             C-CTTTCSCEEEEEETSC--CC-CCBCEEEEC
T ss_pred             C-CcCCCEEEEEEEccCC--ce-EEEEEEEEE
Confidence            9 9999999999999872  22 445556553

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.52  E-value=3.9e-14  Score=105.15  Aligned_cols=128  Identities=19%  Similarity=0.323  Sum_probs=85.5

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~  172 (258)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+|+.  ..+.                 ...++.+..     ...|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            3456788999999999998765  6789999863  2211                 112333322     247999999


Q ss_pred             ccCCCCcEEEEEEEeCCCC--CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEe
Q psy14532        173 QKDHDRGVYWCTATNKQGR--SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLP  245 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~  245 (258)
                      +. +|+|.|.|.+.+..+.  .......|.|..    +|.+........+..|+.++|.|.+.+.+|.+ .|.|++++..
T Consensus        93 ~~-~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~  171 (261)
T 2xqy_G           93 TS-EDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  171 (261)
T ss_dssp             CG-GGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             Cc-ccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCc
Confidence            98 9999999999985321  112345677764    23333222223467799999999996445765 9999999887


Q ss_pred             cc
Q psy14532        246 IL  247 (258)
Q Consensus       246 l~  247 (258)
                      +.
T Consensus       172 ~~  173 (261)
T 2xqy_G          172 SG  173 (261)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.52  E-value=6.2e-14  Score=104.50  Aligned_cols=118  Identities=21%  Similarity=0.447  Sum_probs=84.4

Q ss_pred             CCCcceecCCcEEEEeeeC---cccCceEEEEeCCcccCCC------------------cceEEe-----cCCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVA---GYPIESITWQKGVQQLPLN------------------RRQKVF-----PNGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~---~~~~~~i~W~~~~~~~~~~------------------~~~~~~-----~~~~l~i~~~  172 (258)
                      +....+.+|+.+.|.|.+.   +.+.+.+.|++++......                  .+..+.     .+.+|.|.++
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   91 (268)
T 3mj6_A           12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV   91 (268)
T ss_dssp             CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred             CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence            4456788999999999987   6677789999965432211                  222221     2267999999


Q ss_pred             ccCCCCcEEEEEEEeCCCCC-ccceEEEEeecCCccccCCCCCccCCCCeeeEEEEec--cCCCCceeEEEEC
Q psy14532        173 QKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT--KGDPPLTISWLKN  242 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~  242 (258)
                      +. +|+|.|+|.+.+..+.. .+..+.|.|.  +.   .+....+..|+.++|.|.+.  .+.|.+.+.|+++
T Consensus        92 ~~-~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~---~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           92 QK-ADEGIYTCEIRLKNESMVMKKPVELWVL--PE---EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             CG-GGCEEEEEEEEETTCCCEEEEEEEEEEE--CC---CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             CH-hHCEEEEEEEEecCCcceEEEEEEEEEe--cc---CCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            97 99999999999875432 3344555554  21   23345678899999999993  4678899999993

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=87.92  Aligned_cols=94  Identities=15%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCcccc-------ceecccceeeccccccceeeeeCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHEN-------KNRIGEARVQQLPLNRRQKVFPNG   74 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   74 (258)
                      +|.|...+.++.+.+|++++|.|.+.+  .+.+.|+|+|+++.......       ++.+...             ....
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~-------------g~~~   72 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQK-------------GLQH   72 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCB-------------TTEE
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeC-------------CcEE
Confidence            467889999999999999999999986  77899999999887652111       2222200             0112


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      +|.|.++ +.+|+|.|+|..-+.   .. .++.|.|..+|.
T Consensus        73 ~L~I~~v-~~~D~G~Y~~~~~~~---~~-ssA~L~V~~~p~  108 (112)
T 2e6q_A           73 RLILHAV-KHQDSGALVGFSCPG---VQ-DSAALTIQESSG  108 (112)
T ss_dssp             EEEEESC-CSTTCSEEEEEEETT---EE-EEEEEEEECSSC
T ss_pred             EEEECCC-CHHHCccEEEEEECC---ee-EEEEEEEeCCCc
Confidence            7999999 999999998754432   22 567888887664

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.52  E-value=1.3e-13  Score=89.36  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=70.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|..  ..  ...+..+.|.|.+.|.|.|.|+|+|+|..+........ .+...     .+   ......++|.|.++
T Consensus         4 pP~I~l--~~--~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~-~~~~~-----~~---~~~~~~~~L~i~~~   70 (126)
T 1he7_A            4 PASVQL--HT--AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT-EFLEP-----AA---NETVRHGCLRLNQP   70 (126)
T ss_dssp             CCCCCC--CC--CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEE-EEECC-----CS---SCCCEEEEEEEESC
T ss_pred             CCEEEc--cC--CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeE-EEeec-----cc---cccccceEEEECcC
Confidence            677622  11  34778999999999999999999999999876421110 00000     00   00011357999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       ...|+|.|+|.|.|..|... ..+.|.|...|.
T Consensus        71 -~~~D~G~YtC~A~N~~G~~~-~t~~l~v~~~P~  102 (126)
T 1he7_A           71 -THVNNGNYTLLAANPFGQAS-ASIMAAFMDNPF  102 (126)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEECCCSCTT
T ss_pred             -CCCCCEEEEEEEEECCCeEE-EEEEEEEEcCCC
Confidence             99999999999999999877 788888877664

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.5e-14  Score=90.12  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=68.1

Q ss_pred             CCcceeecee---eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQ---QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~---~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ||.+...+..   +.+.+|++++|.|.+.+.+.+ +.|+|++..+...   .++.+.             ......+|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~---~~~~~~-------------~~~~~~~L~I   69 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES---ELLVVK-------------MDGRKHRLIL   69 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCB---TTBEEE-------------EETTEEEEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC---CCEEEE-------------eCCCEEEEEE
Confidence            6777777777   789999999999999988888 9999999887644   111111             0001246999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      .++ +..|+|.|+|.+.|..     ..+.|.|..+|.
T Consensus        70 ~~~-~~~D~G~Y~C~a~n~~-----~~~~l~V~~~P~  100 (104)
T 2e6p_A           70 PEA-KVQDSGEFECRTEGVS-----AFFGVTVQDPSG  100 (104)
T ss_dssp             SSC-CTTTCEEEEEECSSCC-----CCEEEEEECCCC
T ss_pred             CCC-ChhhCEEEEEEECCce-----EEEEEEEcCCCC
Confidence            999 9999999999998863     456677776653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-13  Score=88.84  Aligned_cols=87  Identities=17%  Similarity=0.365  Sum_probs=67.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC---cEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG---TLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i   78 (258)
                      ||.|...+.+..+.+|++++|.|.+.+.  +.+.|+|++..+...   .++.+                ..++   +|.|
T Consensus        19 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~---~~~~~----------------~~~~~~~~L~I   77 (113)
T 2edh_A           19 PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG---DRHSL----------------RQDGARCELQI   77 (113)
T ss_dssp             CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCS---SSEEE----------------EEETTEEEEEE
T ss_pred             CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCC---CcEEE----------------EECCCEEEEEE
Confidence            5688888889999999999999999764  789999998877543   22221                1223   7999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      .++ +.+|+|.|+|.+    +... ..+.|.|..+|.
T Consensus        78 ~~v-~~~D~G~Y~C~a----~~~~-~~~~l~V~~~p~  108 (113)
T 2edh_A           78 RGL-VAEDAGEYLCMC----GKER-TSAMLTVRAMPS  108 (113)
T ss_dssp             CSC-CSTTCEEEEEEE----TTEE-EEEEEEECCCCC
T ss_pred             CCC-ChhhCEEEEEEe----CCCC-EEEEEEEeCCCC
Confidence            999 999999999999    3333 677888876653

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.52  E-value=8.5e-14  Score=86.78  Aligned_cols=85  Identities=26%  Similarity=0.414  Sum_probs=65.7

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      +..+.+..+.+|+++.|.|.+.+  .+.+.|+|++..+...   .+..                 ..+++|.|.++ +.+
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~---~~~~-----------------~~~~~L~i~~~-~~~   61 (95)
T 4hwu_A            5 GSQPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN---NRTV-----------------LIGEYLQIKGA-TPR   61 (95)
T ss_dssp             ---CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC---SSEE-----------------EETTEEEECSC-CGG
T ss_pred             ccCCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC---ceEE-----------------EeCCEEEECcC-Ccc
Confidence            34678888999999999999886  5799999999877543   1111                 12568999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      |+|.|+|.+.+..+... ..+.|.|..++
T Consensus        62 D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~   89 (95)
T 4hwu_A           62 DSGLYACTAARTVDSET-WIFMVNVTDAA   89 (95)
T ss_dssp             GCEEEEEEEECSSCEEE-EEEEEEECCC-
T ss_pred             cCEEEEEEEccCCCcEE-EEEEEEEeCCc
Confidence            99999999999988665 77888887653

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.8e-14  Score=89.96  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=70.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |+.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+...   .++.+..            ......+|.|.++
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~---~~~~~~~------------~~~~~~~L~I~~v   77 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN---ELNEIDA------------QPGGYHVLTLRQL   77 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCS---SSCCBCC------------BTTTBCCBEECSC
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCC---CcEEEEE------------cCCCEEEEEEcCC
Confidence            346777888999999999999999999888899999999877654   1111110            0012347999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCee
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV  116 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  116 (258)
                       +.+|+|.|+|.+    +... ..+.|.|..+|.+
T Consensus        78 -~~~D~G~Y~C~~----g~~~-~~~~L~V~~~p~~  106 (115)
T 2cr6_A           78 -ALKDSGTIYFEA----GDQR-ASAALRVTEKPSV  106 (115)
T ss_dssp             -CTTTCEEEEEEE----TTEE-CCEEEEEECCSSC
T ss_pred             -ChhhCEEEEEEE----CCee-EEEEEEEECCCce
Confidence             999999999993    3344 6678888877643

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.51  E-value=9.7e-14  Score=104.31  Aligned_cols=125  Identities=15%  Similarity=0.339  Sum_probs=86.5

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeCCc--ccC-----------------CCcceEEec-----CCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGVQ--QLP-----------------LNRRQKVFP-----NGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~--~~~-----------------~~~~~~~~~-----~~~l~i~~~  172 (258)
                      +....+.+|++++|.|.+.+.+  .+.+.|++++.  ...                 ...++.+..     ..+|.|.++
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            4456788999999999997764  57899999541  110                 123333332     247999999


Q ss_pred             ccCCCCcEEEEEEEeCCCC----CccceEEEEeecCC---------------ccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        173 QKDHDRGVYWCTATNKQGR----SSSQNVHISVTVPP---------------KIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      +. +|+|.|.|.+.+..+.    .......|.|..+|               .+...+....+.+|++++|.|.+ .+.|
T Consensus       113 ~~-~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~  190 (282)
T 1qok_A          113 TS-EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSA-SSSV  190 (282)
T ss_dssp             CG-GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEE-SSCC
T ss_pred             Ch-hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEe-cCCC
Confidence            98 9999999999987541    11234567776643               12222434568899999999999 5767


Q ss_pred             CceeEEEE--CCEec
Q psy14532        234 PLTISWLK--NGLPI  246 (258)
Q Consensus       234 ~~~~~W~~--~g~~l  246 (258)
                       +.+.|++  +|+.+
T Consensus       191 -~~v~W~k~~~g~~~  204 (282)
T 1qok_A          191 -SYMHWFQQKPGTSP  204 (282)
T ss_dssp             -SCCEEEEECTTSCC
T ss_pred             -ceEEEEEECCCCCc
Confidence             8999999  66654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=4.2e-14  Score=109.99  Aligned_cols=109  Identities=18%  Similarity=0.239  Sum_probs=67.1

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .+.++.+.+|++++|.|.+.+ |.+.+.|++++..+......               ..+..+ .+++|.|.++ +.+|+
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~---------------~~r~~~-~~~~L~I~~v-~~~D~  313 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGS---------------NGSVSV-RNGDLFFKKV-QVEDG  313 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCS---------------SSSEEE-ETTEEEESSC-CTTSC
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeeccc---------------CCceEe-ecCeEEEeec-CcccC
Confidence            345678999999999999998 88999999976543322100               001122 5778999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEE
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESIT  145 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~  145 (258)
                      |.|+|.|.|..|... ..+.|.|...+          ..|+.+.|.|.+.|.|.|.|.
T Consensus       314 G~Y~C~a~N~~g~~~-~~~~l~V~~~~----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          314 GVYTCYAMGETFNET-LSVELKVYNFT----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEECSSCEEE-EEEEEEEESSC----------CC-------------------
T ss_pred             EEEEEEEecCCCccE-EEEEEEEEeee----------ccCCceEEEEEeCCCCCCccc
Confidence            999999999977766 77888886432          577899999999999988763

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.51  E-value=5.8e-14  Score=88.97  Aligned_cols=87  Identities=21%  Similarity=0.468  Sum_probs=66.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC---cEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG---TLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i   78 (258)
                      ||.|...+.++.+.+|++++|.|.+.+.+.+ +.|+|++..+...   .++.+                ..++   +|.|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~---~~~~~----------------~~~~~~~~L~I   67 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG---DKYSL----------------RQEGAMLELVV   67 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS---SSEEE----------------EECSSEEEEEE
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC---CcEEE----------------EEcCCEEEEEE
Confidence            6888888899999999999999999988888 9999998776533   12211                1223   5999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      .++ +.+|+|.|+|.    .+... ..+.|.|..+|
T Consensus        68 ~~v-~~~D~G~Y~C~----~g~~~-~~~~l~V~~~p   97 (103)
T 2e7b_A           68 RNL-RPQDSGRYSCS----FGDQT-TSATLTVTALP   97 (103)
T ss_dssp             CSC-CTTTCCCEEEE----CSSCB-CCBCEEEECCC
T ss_pred             ccC-CcccCEEEEEE----ECCcE-EEEEEEEEecc
Confidence            999 99999999998    23333 55677777655

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.50  E-value=2.5e-14  Score=95.61  Aligned_cols=98  Identities=23%  Similarity=0.409  Sum_probs=67.0

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+.....   ...............+.....+++|.|.+
T Consensus        20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   96 (137)
T 3qr2_A           20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS---QLWDGARLDRVHIHATYHQHAASTISIDT   96 (137)
T ss_dssp             -CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCE---ECCTTHHHHTEEEEEEESSSEEEEEEECS
T ss_pred             CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccce---eecccCcccceEEecccccccceEEEECC
Confidence            378999999999999999999999999999999999997664432200   00000000000000011112346899999


Q ss_pred             cccCCCceEEEEEEEeCCccee
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSS  102 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~  102 (258)
                      + +..|+|.|+|.+.|..|...
T Consensus        97 v-~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           97 L-VEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             C-CGGGCEEEEEEEECCTTSSS
T ss_pred             C-CcccCEEEEEEEEecCCccc
Confidence            9 99999999999999887653

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.50  E-value=8.6e-14  Score=102.94  Aligned_cols=130  Identities=20%  Similarity=0.305  Sum_probs=85.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC---------------CCc-ceEEecCCe--EEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP---------------LNR-RQKVFPNGT--LLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~---------------~~~-~~~~~~~~~--l~i~~~~~~~~~  178 (258)
                      +..+.+.+|+.++|.|.+.+.+.+.+.|++..  ....               ... ++.+..+..  |.|.+++. +|+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~-~Ds   86 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM-SQG   86 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC-SSC
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh-hhC
Confidence            34567889999999999888788899999832  1100               001 333333222  99999997 999


Q ss_pred             cEEEEEEEeCCC---C--CccceEEEEeec------CCccccCC-CCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEe
Q psy14532        179 GVYWCTATNKQG---R--SSSQNVHISVTV------PPKIAPFE-FQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLP  245 (258)
Q Consensus       179 g~y~C~~~~~~~---~--~~~~~~~l~v~~------~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~  245 (258)
                      |.|.|.+.+..+   .  .......|.|..      +|.+...+ ....+..|+.++|.|.+.+.+|.+ .+.|+++|+.
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~  166 (253)
T 3to4_D           87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (253)
T ss_dssp             EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE
Confidence            999999986532   0  112334555553      33333221 111233478999999996557766 8999999999


Q ss_pred             cccc
Q psy14532        246 ILSA  249 (258)
Q Consensus       246 l~~~  249 (258)
                      +..+
T Consensus       167 l~~~  170 (253)
T 3to4_D          167 VHSG  170 (253)
T ss_dssp             ECTT
T ss_pred             CCCc
Confidence            8764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.50  E-value=1.3e-13  Score=101.56  Aligned_cols=122  Identities=15%  Similarity=0.220  Sum_probs=82.1

Q ss_pred             CCCcceecCCcEEEEeeeCccc-----CceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-----IESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|+.++|.|.+.+.+     .+.+.|+++.  ....            ...++.+..   ..+|.|.++.. +
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~   86 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA-E   86 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-G
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCH-H
Confidence            3456788999999999998876     6899999843  2110            122333322   23699999997 9


Q ss_pred             CCcEEEEEEEeCCCCCccceEEEEeecCC------------ccc-cCCCCCccCCCCeeeEEEEeccCCC--CceeEEEE
Q psy14532        177 DRGVYWCTATNKQGRSSSQNVHISVTVPP------------KIA-PFEFQPDLHSGDRAGVQCLVTKGDP--PLTISWLK  241 (258)
Q Consensus       177 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~p------------~~~-~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  241 (258)
                      |+|.|.|.+.+..+........|.|..++            .+. ..+....+.+|++++|.|.+. +.+  .+.+.|++
T Consensus        87 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k  165 (247)
T 1svz_A           87 DLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKAT-NYAFTDYSMHWVK  165 (247)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEE-SSCGGGSCEEEEE
T ss_pred             HCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEc-CcccCCcEEEEEE
Confidence            99999999998754223344567776543            111 112234588999999999995 543  57899998


Q ss_pred             C
Q psy14532        242 N  242 (258)
Q Consensus       242 ~  242 (258)
                      +
T Consensus       166 ~  166 (247)
T 1svz_A          166 Q  166 (247)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.50  E-value=1.4e-13  Score=100.40  Aligned_cols=128  Identities=26%  Similarity=0.347  Sum_probs=81.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC----------------CCcceEEec-----CCeEEEEeccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP----------------LNRRQKVFP-----NGTLLIENVQK  174 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~  174 (258)
                      ....+.+|+.++|.|.+.+.+  ...+.|++..  ....                ...++.+..     +.+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            446788999999999987654  5789999853  2111                123444332     12799999998


Q ss_pred             CCCCcEEEEEEEeCC--CC---CccceEEEEeecC----CccccCCCCCccCCC-CeeeEEEEeccCCCCc-eeEEEE-C
Q psy14532        175 DHDRGVYWCTATNKQ--GR---SSSQNVHISVTVP----PKIAPFEFQPDLHSG-DRAGVQCLVTKGDPPL-TISWLK-N  242 (258)
Q Consensus       175 ~~~~g~y~C~~~~~~--~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g-~~~~l~C~~~~~~p~~-~~~W~~-~  242 (258)
                       +|+|.|.|.+.+..  +.   .......|.|...    |.+........+..| +.++|.|.+.+.+|.+ .+.|++ |
T Consensus        88 -~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~  166 (232)
T 1dn0_B           88 -ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN  166 (232)
T ss_dssp             -GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             -ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence             99999999998421  11   1223456777652    332221112234578 9999999996556775 999999 9


Q ss_pred             CEeccc
Q psy14532        243 GLPILS  248 (258)
Q Consensus       243 g~~l~~  248 (258)
                      |+.+..
T Consensus       167 g~~l~~  172 (232)
T 1dn0_B          167 NSDISS  172 (232)
T ss_dssp             SCEECC
T ss_pred             CCceee
Confidence            988754

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=91.86  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCcccc-ceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHEN-KNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.|...+.++.+.+|+++.|.|.+.+.+ +.+.|+|++..+....... ++.+.             ......+|.|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~-------------~~~~~~~L~I~~   73 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFK-------------KDGKRHILIFSD   73 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEE-------------ECSSEEEEECSS
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEE-------------ECCCEEEEEECC
Confidence            67888888999999999999999999887 8999999998775542110 11111             000123699999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      + ..+|+|.|+|.+.+..     ..+.|.|..+
T Consensus        74 ~-~~~D~G~Y~C~a~n~~-----~~~~l~V~~~  100 (101)
T 2edk_A           74 V-VQEDRGRYQVITNGGQ-----CEAELIVEEK  100 (101)
T ss_dssp             C-CGGGCSBEEEECSSCE-----ECCBEEEECC
T ss_pred             C-ChhhCEEEEEEEcCCc-----EEEEEEEeCC
Confidence            9 9999999999998621     3445666544

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=1.2e-13  Score=100.58  Aligned_cols=129  Identities=19%  Similarity=0.296  Sum_probs=85.4

Q ss_pred             CCCcceecCCcEEEEeeeCcc--cCceEEEEeCC--cccC----------------CCcceEEecC-----CeEEEEecc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQLP----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~~----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      +..+.+.+|+.++|.|.+.+.  +...+.|++..  ....                ...++.+..+     .+|.|.+++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (230)
T 1ypz_F            8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (230)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC
Confidence            445678899999999999764  56789999843  2110                1233333321     269999999


Q ss_pred             cCCCCcEEEEEEEeC--CC-CCccceEEEEeec---------CCccccC-CCCCccCCCCeeeEEEEeccCCCC-ceeEE
Q psy14532        174 KDHDRGVYWCTATNK--QG-RSSSQNVHISVTV---------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPP-LTISW  239 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~--~~-~~~~~~~~l~v~~---------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W  239 (258)
                      . +|+|.|.|.+.+.  .. ........|.|..         +|.+.+. +....+..|+.++|.|.+.+.+|. +.|.|
T Consensus        88 ~-~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W  166 (230)
T 1ypz_F           88 E-EDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYW  166 (230)
T ss_dssp             G-GGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEE
T ss_pred             h-hhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEE
Confidence            7 9999999999874  11 1122345677752         2333222 222234568899999999655675 69999


Q ss_pred             EE-CCEeccc
Q psy14532        240 LK-NGLPILS  248 (258)
Q Consensus       240 ~~-~g~~l~~  248 (258)
                      ++ ||+.+..
T Consensus       167 ~~~~g~~l~~  176 (230)
T 1ypz_F          167 KEKDGNTILD  176 (230)
T ss_dssp             ECTTSSCBCC
T ss_pred             EccCCeEccc
Confidence            99 8887753

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=86.02  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=63.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .|.|...+.++.+.+|+++.|.|.+ +.+.+.+.|+|++..+...   .++.+.             ......+|.|.++
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~---~~~~~~-------------~~~~~~~L~I~~v   70 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS---NKYGLA-------------TEGTRHTLTVREV   70 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS---TTCEEE-------------EETTEEEEEESSC
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC---CcEEEE-------------EcCCEEEEEEcCC
Confidence            3677788899999999999999999 6778899999998877543   121111             0001236999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       +..|+|.|+|.+    +... ..+.|.|.
T Consensus        71 -~~~D~G~Y~C~a----g~~~-~~~~l~V~   94 (95)
T 2k1m_A           71 -GPADQGSYAVIA----GSSK-VKFDLKVI   94 (95)
T ss_dssp             -CTTCCSEEEEEE----TTEE-EEEEEEEE
T ss_pred             -CcccCEEEEEEE----CCce-EEEEEEEe
Confidence             999999999999    3333 45666654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.49  E-value=2.4e-13  Score=100.80  Aligned_cols=121  Identities=17%  Similarity=0.312  Sum_probs=82.4

Q ss_pred             CCCcceecCCcEEEEeeeCcc--cCceEEEEeCC--ccc----------------CCCcceEEecC-----CeEEEEecc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQL----------------PLNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~----------------~~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      +....+.+|+.++|.|.+.+.  +.+.+.|++..  ...                ....++.+..+     .+|.|.+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            345568899999999999873  47799999842  111                01123333321     269999999


Q ss_pred             cCCCCcEEEEEEEeCCCC---CccceEEEEeecC--------------CccccCCCCCccCCCCeeeEEEEeccCCCCc-
Q psy14532        174 KDHDRGVYWCTATNKQGR---SSSQNVHISVTVP--------------PKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-  235 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  235 (258)
                      . +|+|.|+|.+.+..+.   .......|.|..+              +.+...+....+.+|++++|.|.+ .+.+.+ 
T Consensus        95 ~-~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~  172 (257)
T 3gkz_A           95 S-EDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSA-SSSVSSS  172 (257)
T ss_dssp             G-GGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEE-SSCCCGG
T ss_pred             h-hhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEE-ccCccce
Confidence            7 9999999999986211   1234456777654              333334445678899999999999 466666 


Q ss_pred             eeEEEE
Q psy14532        236 TISWLK  241 (258)
Q Consensus       236 ~~~W~~  241 (258)
                      .+.|++
T Consensus       173 ~v~W~k  178 (257)
T 3gkz_A          173 HLYWYQ  178 (257)
T ss_dssp             GEEEEE
T ss_pred             EEEEEE
Confidence            999998

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.49  E-value=2.1e-13  Score=101.02  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC-------------CCcceEEe-----cCCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP-------------LNRRQKVF-----PNGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~-----~~~~l~i~~~~~~~~~  178 (258)
                      +..+.+.+|++++|.|.+.+.+.+.+.|++..  ....             ...++.+.     ...+|.|.++.. +|+
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~Ds   88 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHR-SDS   88 (256)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCG-GGC
T ss_pred             CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCc-ccC
Confidence            44567889999999999988888999999842  1110             11222221     123699999997 999


Q ss_pred             cEEEEEEEeCCCCC---ccceEEEEeec--------------------CCccccCCCCCccCCCCeeeEEEEeccCCCCc
Q psy14532        179 GVYWCTATNKQGRS---SSQNVHISVTV--------------------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL  235 (258)
Q Consensus       179 g~y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  235 (258)
                      |.|.|.+.+..+..   ......|.|..                    +|.+...+....+.+|+.++|.|.+. +. .+
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~-~~-~~  166 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQT-NS-HN  166 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEEC-SC-CS
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcC-CC-ce
Confidence            99999999875321   22345566654                    33444445555677899999999995 44 57


Q ss_pred             eeEEEE
Q psy14532        236 TISWLK  241 (258)
Q Consensus       236 ~~~W~~  241 (258)
                      .+.|++
T Consensus       167 ~v~W~k  172 (256)
T 3tf7_C          167 YMYWYR  172 (256)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            899998

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=86.34  Aligned_cols=88  Identities=16%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC---cEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG---TLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i   78 (258)
                      ||.|...+.++.+.+|++++|.|.+ +.+.+.+.|+|++..+...   .++.+                ..++   +|.|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~---~~~~~----------------~~~~~~~~L~I   67 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS---GKHQP----------------SQEGLTLRLTI   67 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSS---SSEEE----------------EEETTEEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCC---CeEEE----------------EeCCCEEEEEE
Confidence            6888888899999999999999994 7788899999998877544   12211                1223   7999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      .++ +.+|+|.|+|.    .+... ..+.|.|...+.
T Consensus        68 ~~v-~~~D~G~Y~C~----~g~~~-~~~~l~V~~~p~   98 (103)
T 2dku_A           68 SAL-EKADSDTYTCD----IGQAQ-SRAQLLVQGRRS   98 (103)
T ss_dssp             ESC-CTTTCSEEEEE----CSSCB-CCEEEEEECSCC
T ss_pred             CCC-CcccCEEEEEE----eCCce-EEEEEEEeCccC
Confidence            999 99999999998    34444 567788876553

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.49  E-value=2.1e-13  Score=100.75  Aligned_cols=130  Identities=21%  Similarity=0.378  Sum_probs=86.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--cc---------------CCCcceEEec----CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL---------------PLNRRQKVFP----NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~---------------~~~~~~~~~~----~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|+.++|.|.+.. +.+.+.|+++..  ..               ....++.+..    +..|.|.+++. +|
T Consensus        10 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~-~D   87 (252)
T 1oga_E           10 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK-NP   87 (252)
T ss_dssp             CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS-CC
T ss_pred             CCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCCh-hh
Confidence            44567899999999999853 567999998531  11               0123344332    24799999997 99


Q ss_pred             CcEEEEEEEeCCC--CCccceEEEEeec------CCccccC-CCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecc
Q psy14532        178 RGVYWCTATNKQG--RSSSQNVHISVTV------PPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPIL  247 (258)
Q Consensus       178 ~g~y~C~~~~~~~--~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~  247 (258)
                      +|.|.|.+.+...  ........|.|..      +|.+... +....+..|+.++|.|.+.+.+|. +.|.|+++|+.+.
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            9999999998621  0112234456543      3444332 222234468999999999655575 5999999999987


Q ss_pred             ccc
Q psy14532        248 SAM  250 (258)
Q Consensus       248 ~~~  250 (258)
                      .+.
T Consensus       168 ~~~  170 (252)
T 1oga_E          168 SGV  170 (252)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            643

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.49  E-value=1.9e-13  Score=82.76  Aligned_cols=77  Identities=26%  Similarity=0.412  Sum_probs=62.2

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+....++.+...+   .|.|.++.. +|+|.|+|.|.+     .+..
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n-----~~~~   76 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARS-GDAGEYLCDAPQ-----DSRI   76 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSS-TTCEEEEEECTT-----TCEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCC-cccEEEEEEECC-----EEEE
Confidence            4567889999999999976 88899999999999887777665544   699999997 999999999854     3455


Q ss_pred             EEEEeec
Q psy14532        197 VHISVTV  203 (258)
Q Consensus       197 ~~l~v~~  203 (258)
                      +.|.|..
T Consensus        77 a~l~V~e   83 (84)
T 2lu7_A           77 FLVSVEE   83 (84)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            6676654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.48  E-value=2e-13  Score=106.75  Aligned_cols=124  Identities=13%  Similarity=0.196  Sum_probs=85.8

Q ss_pred             eecCCcEEEEeeeCcc---cC-ceEEEEeCCcccCCCc--------ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        124 AIAGEPLYLGCPVAGY---PI-ESITWQKGVQQLPLNR--------RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~---~~-~~i~W~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +..|+.++|.|.+.+.   |. ..|.|++++..+....        .........|.|..+.. +|.|.|+|.+.+....
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDW-LNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhc-cCCCEEEEEEecCCCC
Confidence            6789999999999886   32 3799999886542111        00111223688888876 9999999999987652


Q ss_pred             C-ccceEEE--EeecCCccccCCCCCccCCCCeeeEEEEeccCCC-CceeEEEECCEeccc
Q psy14532        192 S-SSQNVHI--SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  248 (258)
Q Consensus       192 ~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~  248 (258)
                      . ....+.+  .+..+|.+.+.+.......|+.++|.|.+.+.+| .+.|.|++||+.+..
T Consensus       259 ~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  319 (376)
T 2aty_A          259 APIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAEN  319 (376)
T ss_pred             CceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCC
Confidence            2 1222222  3445676666655555566999999999965455 579999999998754

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.48  E-value=2.9e-13  Score=100.29  Aligned_cols=123  Identities=15%  Similarity=0.334  Sum_probs=85.2

Q ss_pred             ccCCCcceecCCcEEEEeeeCc--ccCceEEEEeCC--cccC-----------------CCcceEEecC-----CeEEEE
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAG--YPIESITWQKGV--QQLP-----------------LNRRQKVFPN-----GTLLIE  170 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~--~~~~-----------------~~~~~~~~~~-----~~l~i~  170 (258)
                      ..+..+.+.+|++++|.|.+.+  .+.+.+.|++..  ....                 ...++.+..+     .+|.|.
T Consensus        11 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   90 (256)
T 3juy_B           11 VQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   90 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEEC
Confidence            3456778899999999999977  367799999742  1110                 1123333311     259999


Q ss_pred             ecccCCCCcEEEEEEEeC-----------CCCCccceEEEEeecCC---------------ccccCCCCCccCCCCeeeE
Q psy14532        171 NVQKDHDRGVYWCTATNK-----------QGRSSSQNVHISVTVPP---------------KIAPFEFQPDLHSGDRAGV  224 (258)
Q Consensus       171 ~~~~~~~~g~y~C~~~~~-----------~~~~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l  224 (258)
                      +++. +|+|.|.|.+.+.           ..........|.|...+               .+...+....+.+|++++|
T Consensus        91 ~v~~-~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L  169 (256)
T 3juy_B           91 SLRS-ADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATF  169 (256)
T ss_dssp             SCCG-GGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEE
T ss_pred             CCCc-ccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEE
Confidence            9997 9999999999986           11122345567776632               2333355567889999999


Q ss_pred             EEEeccCCCC-ceeEEEE
Q psy14532        225 QCLVTKGDPP-LTISWLK  241 (258)
Q Consensus       225 ~C~~~~~~p~-~~~~W~~  241 (258)
                      .|.+. +.|. +.+.|++
T Consensus       170 ~C~~~-~~~~~~~v~W~k  186 (256)
T 3juy_B          170 SCRSS-HSIRSRRVAWYQ  186 (256)
T ss_dssp             EEEES-SCCTTCCEEEEE
T ss_pred             EEEEC-CCcCCeeEEEEE
Confidence            99994 5555 8999998

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.48  E-value=1.6e-13  Score=99.39  Aligned_cols=126  Identities=21%  Similarity=0.463  Sum_probs=83.5

Q ss_pred             CCcceecCCcEEEEeeeCcc--cCceEEEEeCCc--ccC-------------------CCcceEEecC-----CeEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQ--QLP-------------------LNRRQKVFPN-----GTLLIEN  171 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~~--~~~-------------------~~~~~~~~~~-----~~l~i~~  171 (258)
                      ....+.+|+.++|.|.+.+.  +...+.|++...  ...                   ...++.+..+     .+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            34668899999999999763  367899998431  110                   1123333222     2599999


Q ss_pred             cccCCCCcEEEEEEEeCCC-CCccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEECCE
Q psy14532        172 VQKDHDRGVYWCTATNKQG-RSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGL  244 (258)
Q Consensus       172 ~~~~~~~g~y~C~~~~~~~-~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~  244 (258)
                      ++. +|+|.|.|.+.+... ........|.|..    +|.+........ ..|+.++|.|.+.++.|.  +.+.|+++|+
T Consensus        88 v~~-~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~  165 (221)
T 3m8o_H           88 LKS-DDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQ  165 (221)
T ss_dssp             CCG-GGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCST
T ss_pred             CCH-HHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCE
Confidence            998 999999999998631 2233445666653    232221111222 689999999999654776  5999999998


Q ss_pred             ecc
Q psy14532        245 PIL  247 (258)
Q Consensus       245 ~l~  247 (258)
                      .+.
T Consensus       166 ~~~  168 (221)
T 3m8o_H          166 GVT  168 (221)
T ss_dssp             TCE
T ss_pred             ECc
Confidence            773

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.22  E-value=2.7e-15  Score=104.78  Aligned_cols=172  Identities=10%  Similarity=0.033  Sum_probs=94.8

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccc-eeeeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~   81 (258)
                      +.+.+..+.+.+|++|+|.|.+.+.+...+.|||..  .....-....... ...  ...++... .....+.+|.|.++
T Consensus         3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~-~~~--~~~R~s~~~~~~~~~~sL~I~~v   79 (185)
T 3c6l_A            3 VRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVS-NKK--EDGRFTIFFNKREKKFSLHIADS   79 (185)
Confidence            456678889999999999999876555689999853  2111000000000 000  01111110 01123457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecC-----CeeccCCCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGA-----PFVRPMGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPL  155 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~  155 (258)
                       +.+|+|.|.|.+.+... .......|.|...     |.+.....    ..+.++|.|.+.+ +|.++|.|..+......
T Consensus        80 -~~~DsG~Y~C~~~~~~~-~fg~gT~L~V~~~~~~~~P~V~~~~~----~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~~  153 (185)
T 3c6l_A           80 -QPGDSATYFCAASDNRI-FFGDGTQLVVKPNIQNPEPAVYQLKD----PRSQDSTLCLFTDFDSQINVPKTMESGTFIT  153 (185)
Confidence             99999999999876211 1112234555432     22222111    1237899999988 78999999877665543


Q ss_pred             CcceEEecCCeEEEEecccCCCCcEEEEEE
Q psy14532        156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       156 ~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      .....-...-.+.+..+...++.-.+.|+-
T Consensus       154 ~~~~~~~~~~~~~~~~~~~w~~~~~~~c~~  183 (185)
T 3c6l_A          154 DKTVLDMKAMDSKSNGAIAWSNQTSFTCQD  183 (185)
Confidence            332221111123333343335555788853

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.48  E-value=7.1e-14  Score=103.42  Aligned_cols=126  Identities=23%  Similarity=0.416  Sum_probs=78.0

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~~  173 (258)
                      ....+.+|+.++|.|.+.+.+  .+.+.|++..  ....                 ...++.+..     ...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            345788999999999998754  5789999853  1110                 122333322     2379999999


Q ss_pred             cCCCCcEEEEEEEeCCCC------------CccceEEEEeec----CCccccCCCCCccCCCCeeeEEEEeccCCCCc-e
Q psy14532        174 KDHDRGVYWCTATNKQGR------------SSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-T  236 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~  236 (258)
                      . +|+|.|.|.+.+..+.            .......|.|..    +|.+........+..|+.++|.|.+.+.+|.+ .
T Consensus        88 ~-~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~  166 (257)
T 3bn9_D           88 A-EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  166 (257)
T ss_dssp             G-GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCE
T ss_pred             h-hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcE
Confidence            7 9999999999986531            112335677764    34333322222356799999999996555776 9


Q ss_pred             eEEEECCEec
Q psy14532        237 ISWLKNGLPI  246 (258)
Q Consensus       237 ~~W~~~g~~l  246 (258)
                      |.|+++|..+
T Consensus       167 v~W~k~g~~~  176 (257)
T 3bn9_D          167 VSWNSGALTS  176 (257)
T ss_dssp             EEETTTTCCS
T ss_pred             EEEeeCCCcC
Confidence            9999998864

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.48  E-value=8.2e-14  Score=91.12  Aligned_cols=99  Identities=20%  Similarity=0.273  Sum_probs=66.3

Q ss_pred             eeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532         10 IQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      ..+.+.+|+++.|.|.+.+.  +.+.+.|++++..+........   .  .   ............++|.|.++ +.+|+
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~---~--~---~~~~~~~~~~~~~~L~I~~v-~~~Ds   86 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR---D--L---KTQSGSEMKKFLSTLTIDGV-TRSDQ   86 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCC---S--C---CEEEETTEEEEEEEEEESSC-CGGGC
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeee---c--c---ccccCCceeeEEEEEEECCC-CcccC
Confidence            33488999999999999984  4568999998764321100000   0  0   00000011123457999999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEecCCeecc
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVTGAPFVRP  118 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~  118 (258)
                      |.|+|.+.|..|... ..+.|.|..+|.+..
T Consensus        87 G~Y~C~a~n~~g~~~-~~~~l~V~~~p~i~~  116 (122)
T 3s35_X           87 GLYTCAASSGLMTKK-NSTFVRVHEKPFVAF  116 (122)
T ss_dssp             EEEEEEEECSSCEEE-EEEEEEEEEEECC--
T ss_pred             EEEEEEEccCCCceE-EEEEEEEeccCeEEe
Confidence            999999999988777 888999988776543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.48  E-value=3.7e-13  Score=100.17  Aligned_cols=122  Identities=16%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             CCCcceecCCcEEEEeeeCccc------CceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP------IESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKD  175 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~------~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~  175 (258)
                      +..+.+.+|+.++|.|.+.+.+      .+.+.|+++.  ..+.            ...++.+..   ..+|.|.++.. 
T Consensus        12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~-   90 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKA-   90 (264)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-
T ss_pred             CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCH-
Confidence            4456788999999999998876      6789999852  2211            123333322   23799999997 


Q ss_pred             CCCcEEEEEEEeCCCCCccceEEEEeecCC------------------cccc-CCCCCccCCCCeeeEEEEeccCCC--C
Q psy14532        176 HDRGVYWCTATNKQGRSSSQNVHISVTVPP------------------KIAP-FEFQPDLHSGDRAGVQCLVTKGDP--P  234 (258)
Q Consensus       176 ~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~~-~~~~~~~~~g~~~~l~C~~~~~~p--~  234 (258)
                      +|+|.|.|.+.+..+........|.|..+|                  .+.. .+....+.+|++++|.|.+. +.+  .
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~  169 (264)
T 2gjj_A           91 EDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS-GYSFTG  169 (264)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE-SSCGGG
T ss_pred             HHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe-CCccCC
Confidence            999999999998653222344567776653                  1111 12234688999999999995 554  3


Q ss_pred             ceeEEEEC
Q psy14532        235 LTISWLKN  242 (258)
Q Consensus       235 ~~~~W~~~  242 (258)
                      +.+.|+++
T Consensus       170 ~~v~W~r~  177 (264)
T 2gjj_A          170 YFINWVKK  177 (264)
T ss_dssp             SEEEEEEE
T ss_pred             eEEEEEEE
Confidence            79999985

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.8e-13  Score=86.90  Aligned_cols=83  Identities=22%  Similarity=0.343  Sum_probs=67.1

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe-cC--CeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-PN--GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .+..+. ..  ..|.|.++.. +|+|.|+|.+.|..+ ..+..
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G-~~~~~  108 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAAR-SDSGEYELSVQIENM-KDTAT  108 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC-SSCEEEECSSEEEEEESSCCT-TTCEEEEEEEECSSC-EECCE
T ss_pred             CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC-CcEEEEECCCeEEEEECCCCh-hcCEEEEEEEEeCCC-eEEEE
Confidence            456788999999999999999999999999988763 233332 22  3499999997 999999999999988 46677


Q ss_pred             EEEEeecCC
Q psy14532        197 VHISVTVPP  205 (258)
Q Consensus       197 ~~l~v~~~p  205 (258)
                      +.|.|..+|
T Consensus       109 ~~l~V~~~P  117 (118)
T 2e7c_A          109 IRIRVVEKA  117 (118)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            888887765

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=8.6e-14  Score=87.48  Aligned_cols=81  Identities=28%  Similarity=0.482  Sum_probs=64.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............|.|.++.. +|+|.|+|.+.|..+. .+..+.
T Consensus        18 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~-~~~~~~   95 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALP-EDHGTYTCLAENALGQ-VSCSAW   95 (99)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCT-TCCBCEEEEEECSSCE-EEEECC
T ss_pred             CCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCCh-hhCEEEEEEEEECCCe-EEEEEE
Confidence            45667889999999999999999999999999887765544434446799999997 9999999999999874 344444


Q ss_pred             EEe
Q psy14532        199 ISV  201 (258)
Q Consensus       199 l~v  201 (258)
                      |.|
T Consensus        96 l~V   98 (99)
T 2yr3_A           96 VTV   98 (99)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=86.49  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=67.9

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+...   ..|.|.++.. +|+|.|+|.+.|..+. .+.
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~-~~~   92 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHT-DDSGTYRAVCTNYKGE-ASD   92 (103)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEE-EEE
T ss_pred             CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCc-ccCEEEEEEEEeCCCc-EEE
Confidence            4567788999999999999999999999999988876665555432   2699999997 9999999999999874 456


Q ss_pred             eEEEEeecC
Q psy14532        196 NVHISVTVP  204 (258)
Q Consensus       196 ~~~l~v~~~  204 (258)
                      .+.|.|...
T Consensus        93 ~~~l~V~~~  101 (103)
T 3qp3_A           93 YATLDVTGG  101 (103)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            667776643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.47  E-value=2.1e-13  Score=106.13  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC----cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN----RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+.+|+.+.|.|.+.| |.+.+.|++++..+...    .++.+ .+++|.|.+++. +|+|.|+|.|.|..+ ..+
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~-~D~G~Y~C~a~N~~g-~~~  328 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQV-EDGGVYTCYAMGETF-NET  328 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCT-TSCEEEEEEEECSSC-EEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCc-ccCEEEEEEEecCCC-ccE
Confidence            34567889999999999999 98999999977654322    24555 778999999997 999999999999976 455


Q ss_pred             ceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeE
Q psy14532        195 QNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTIS  238 (258)
Q Consensus       195 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~  238 (258)
                      ..+.|.|...+           ..|+.++|.|.+ .|.|.|.|.
T Consensus       329 ~~~~l~V~~~~-----------~~g~~~~l~C~~-~g~P~P~i~  360 (361)
T 2xot_A          329 LSVELKVYNFT-----------LHGHHDTLNAAA-DPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEESSC-----------CC--------------------
T ss_pred             EEEEEEEEeee-----------ccCCceEEEEEe-CCCCCCccc
Confidence            66677775422           568899999999 688888763

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=5.6e-13  Score=85.87  Aligned_cols=91  Identities=20%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             CCcceeecee---eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQ---QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~---~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ||.+...+..   +.+.+|+++.|.|.+. .|.+.+.|+|++..+...   .++.+..             .....+|.|
T Consensus        10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~---~~~~~~~-------------~~~~~~L~I   72 (113)
T 2cpc_A           10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES---PALLLQK-------------EDTVRRLVL   72 (113)
T ss_dssp             CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCB---TTBEEEE-------------CSSEEEEEE
T ss_pred             CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccC---CCEEEEE-------------CCCEEEEEE
Confidence            4555555544   6788999999999996 678899999999887653   1211110             001247999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      .++ +.+|+|.|+|.+.|    . +..+.|.|..+|.
T Consensus        73 ~~v-~~~D~G~Y~C~a~n----~-~~~~~l~V~~~p~  103 (113)
T 2cpc_A           73 PAV-QLEDSGEYLCEIDD----E-SASFTVTVTEPPV  103 (113)
T ss_dssp             SSC-CTTTCEEEEEESSS----C-EEEEEEEEECCCC
T ss_pred             CCC-CcccCEEEEEEEec----C-cEEEEEEEecCCc
Confidence            999 99999999999987    2 2677888887764

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.47  E-value=4.4e-13  Score=99.24  Aligned_cols=122  Identities=15%  Similarity=0.275  Sum_probs=80.9

Q ss_pred             CCCcceecCCcEEEEeeeCcc--cCceEEEEeCC--cccC------------CCcceEEecC---CeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQLP------------LNRRQKVFPN---GTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g  179 (258)
                      +....+.+|+.++|.|.+.+.  +.+.+.|+++.  ....            ...++.+...   .+|.|.+++. +|+|
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG   87 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQS-EDEA   87 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCG-GGCE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCCh-hhCE
Confidence            345678899999999999876  67899999853  1111            1123332222   2699999997 9999


Q ss_pred             EEEEEEEeCCCC--CccceEEEEeecCCcc-------------------cc-CCCCCccCCCCeeeEEEEeccCCC--Cc
Q psy14532        180 VYWCTATNKQGR--SSSQNVHISVTVPPKI-------------------AP-FEFQPDLHSGDRAGVQCLVTKGDP--PL  235 (258)
Q Consensus       180 ~y~C~~~~~~~~--~~~~~~~l~v~~~p~~-------------------~~-~~~~~~~~~g~~~~l~C~~~~~~p--~~  235 (258)
                      .|.|.+.+..+.  .......|.|..++..                   .. .+....+.+|++++|.|.+. +.+  .+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~~  166 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAAS-GFTFSSY  166 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEE-SSCGGGS
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEe-CCccccc
Confidence            999999986431  1234456777665421                   11 12234588999999999994 544  68


Q ss_pred             eeEEEEC
Q psy14532        236 TISWLKN  242 (258)
Q Consensus       236 ~~~W~~~  242 (258)
                      .+.|+++
T Consensus       167 ~v~W~r~  173 (256)
T 3ux9_B          167 AMSWVRQ  173 (256)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999985

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=4e-13  Score=85.04  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             CCcceeecee-eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...+.+ +.+.+|+++.|.|.+ +.|.+.+.|+|++..+....  .++.+.             ......+|.|.+
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~--~~~~~~-------------~~~~~~~L~I~~   78 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG--SKYIFE-------------SIGAKRTLTISQ   78 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS--SSSEEE-------------EETTEEEEEECS
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC--CeEEEE-------------ecCCEEEEEECC
Confidence            6778777776 789999999999999 67888999999988765431  111111             000112799999


Q ss_pred             cccCCCceEEEEEEE
Q psy14532         81 VQKDHDRGVYWCTAT   95 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~   95 (258)
                      + +.+|+|.|+|.+.
T Consensus        79 v-~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           79 C-SLADDAAYQCVVG   92 (104)
T ss_dssp             C-SSSSCEEEEEEET
T ss_pred             C-CcccCEEEEEEEC
Confidence            9 9999999999993

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.46  E-value=3.4e-13  Score=86.12  Aligned_cols=87  Identities=17%  Similarity=0.363  Sum_probs=65.7

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC---cEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG---TLL   77 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~   77 (258)
                      .||.|...+.++.+.+|++++|.|.+.+.  +.+.|+|++..+...   .++.+                ..++   +|.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~---~~~~~----------------~~~~~~~~L~   65 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDG---GRYSL----------------KQDGTRCELQ   65 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSS---SSCEE----------------EEETTEEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCC---CCEEE----------------EecCCEEEEE
Confidence            37888888899999999999999998764  689999998776533   22211                1223   499


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      |.++ +.+|+|.|+|.+.+    .. ..+.|.|..+|
T Consensus        66 I~~v-~~~D~G~Y~C~a~n----~~-~~~~l~V~~~p   96 (108)
T 2dm7_A           66 IHDL-SVADAGEYSCMCGQ----ER-TSATLTVRALP   96 (108)
T ss_dssp             ESSC-CTTTCSEEEEEETT----EE-EEEECEEECCC
T ss_pred             ECCC-CcccCEEEEEEEcC----CE-EEEEEEEecCC
Confidence            9999 99999999999943    22 56677777654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=2.2e-13  Score=85.60  Aligned_cols=83  Identities=19%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--cCC--eEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PNG--TLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+....  ..+  .|.|.++.. +|+|.|+|.+.|..+. .
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~-~   88 (99)
T 1g1c_A           11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAINIAGE-T   88 (99)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEE-E
T ss_pred             cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCc-CCCEEEEEEEEECCCc-E
Confidence            345677899999999999999999999999999888765544432  223  699999997 9999999999999874 4


Q ss_pred             cceEEEEee
Q psy14532        194 SQNVHISVT  202 (258)
Q Consensus       194 ~~~~~l~v~  202 (258)
                      ...+.|.|.
T Consensus        89 ~~~~~l~V~   97 (99)
T 1g1c_A           89 SSHAFLLVQ   97 (99)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            455666664

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.46  E-value=1.8e-13  Score=84.89  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccCCCcceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLPLNRRQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++  ..+......... ....|.|.++.. +|+|.|+|.|.|..| ..+.
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G-~~~~   86 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNELG-EDEA   86 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCG-GGCEEEEEEEEETTE-EEEE
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCCh-hcCEEEEEEEEcCCC-eEEE
Confidence            45567889999999999999999999999999  766544322221 224688999997 999999999999987 3445


Q ss_pred             eEEEEe
Q psy14532        196 NVHISV  201 (258)
Q Consensus       196 ~~~l~v  201 (258)
                      .+.|.|
T Consensus        87 ~~~l~V   92 (93)
T 1wit_A           87 IFEVIV   92 (93)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.45  E-value=2.1e-13  Score=85.84  Aligned_cols=84  Identities=25%  Similarity=0.412  Sum_probs=66.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCC--eEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+.....  .....++  .|.|.++.. +|+|.|+|.+.|..+. .+
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~-~~   89 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA-SDAGAYACVAKNRAGE-AT   89 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEE-EE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCe-EE
Confidence            4567788999999999999999999999999987765432  2223343  799999997 9999999999999874 55


Q ss_pred             ceEEEEeecC
Q psy14532        195 QNVHISVTVP  204 (258)
Q Consensus       195 ~~~~l~v~~~  204 (258)
                      ..+.|.|...
T Consensus        90 ~~~~l~V~~~   99 (100)
T 2kdg_A           90 FTVQLDVLAK   99 (100)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEec
Confidence            6677777643

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.8e-13  Score=85.77  Aligned_cols=87  Identities=26%  Similarity=0.375  Sum_probs=68.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC-CcceEEec--CC--eEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFP--NG--TLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~--~~--~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+..  ++  .|.|.++.. +|.|.|+|.+.|..+. 
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~-   91 (110)
T 2dm2_A           14 KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL-DDDGNYTIMAANPQGR-   91 (110)
T ss_dssp             CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCT-TTCSCCEEEEECTTCC-
T ss_pred             cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCCh-hhCEEEEEEEEECCCe-
Confidence            34567789999999999999999999999999988765 33444432  33  699999997 9999999999999884 


Q ss_pred             ccceEEEEeecCCc
Q psy14532        193 SSQNVHISVTVPPK  206 (258)
Q Consensus       193 ~~~~~~l~v~~~p~  206 (258)
                      .+..+.|.|..+|.
T Consensus        92 ~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           92 ISCTGRLMVQAVNS  105 (110)
T ss_dssp             EEECCCEEEECCSC
T ss_pred             EEEEEEEEEECCCC
Confidence            45667777776554

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.45  E-value=2.2e-13  Score=100.70  Aligned_cols=125  Identities=21%  Similarity=0.426  Sum_probs=79.8

Q ss_pred             CCcceecCCcEEEEeeeCc--ccCceEEEEeCCc--cc-----------------CCCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAG--YPIESITWQKGVQ--QL-----------------PLNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~~--~~-----------------~~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|++++|.|.+.+  .+...+.|++...  ..                 ....++.+..+     .+|.|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            4567889999999999865  3456899998421  10                 01123333221     249999999


Q ss_pred             cCCCCcEEEEEEEeCCC---CCccceEEEEee----cCCccccCCCCCccCCCCeeeEEEEeccCCCCc-eeEEEECCEe
Q psy14532        174 KDHDRGVYWCTATNKQG---RSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL-TISWLKNGLP  245 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~---~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~  245 (258)
                      . +|+|.|.|.+.+...   ........|.|.    .+|.+........+..|+.++|.|.+.+++|.+ .+.|+++|..
T Consensus        88 ~-~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H           88 S-EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             G-GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             h-hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence            8 999999999987521   112334566665    234333233333456799999999996557766 8999999873

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.45  E-value=4.4e-13  Score=83.47  Aligned_cols=79  Identities=20%  Similarity=0.413  Sum_probs=64.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +....+.+|+.+.|.|.+.+.| +.+.|++++..+....+..+ .++.|.|.++.. +|+|.|+|.+.|..+. .+..+.
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y~C~a~n~~g~-~~~~~~   91 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIP-ADSGLYACVTSSPSGS-DTTYFS   91 (95)
T ss_dssp             BCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEE-CSSEEEESSCCG-GGSEEEEEEEEETTEE-EEEEEE
T ss_pred             cceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEE-eCCEEEECCCCh-HHCEEEEEEeccCCCc-EEEEEE
Confidence            4566788999999999998887 79999999988876666554 367899999997 9999999999998774 444555


Q ss_pred             EEe
Q psy14532        199 ISV  201 (258)
Q Consensus       199 l~v  201 (258)
                      |.|
T Consensus        92 l~V   94 (95)
T 2ckn_A           92 VNV   94 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.45  E-value=1.2e-11  Score=104.99  Aligned_cols=169  Identities=13%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEE-Ee--eCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS-WK--LDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.+. .+.++.+.+|++++|.|.+.+.|.+.+. |+  +++..+...   ....+.             .....++|.|
T Consensus       165 ~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~---~~~~~~-------------~~~~~~~l~I  227 (731)
T 2v5y_A          165 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK---EIKVTS-------------SRRFIASFNV  227 (731)
T ss_dssp             SCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE---EEEECC-------------SSEEEEEEEE
T ss_pred             ccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc---ceEEec-------------cccceEEEEE
Confidence            46665 5668889999999999999999998887 88  566554322   000010             0011368999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcc----cCc--eEEEEeCCcc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY----PIE--SITWQKGVQQ  152 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~--~i~W~~~~~~  152 (258)
                      .++ ...|+|.|+|.+.|..|...+..+.|.|..+|...............+.|.|.....    +..  .+.|...+..
T Consensus       228 ~~~-~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~  306 (731)
T 2v5y_A          228 VNT-TKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS  306 (731)
T ss_dssp             CSC-CTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS
T ss_pred             ccc-ccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC
Confidence            999 999999999999999987444777888887775544444444455788999976432    111  5666554322


Q ss_pred             cCCCcceEEecCCeEEEEecccCCCCcEEEEEEE--eCCCCC
Q psy14532        153 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT--NKQGRS  192 (258)
Q Consensus       153 ~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~--~~~~~~  192 (258)
                      .   ..........+.|.++.. .+...|+|.+.  |..|..
T Consensus       307 ~---~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~~~N~~G~s  344 (731)
T 2v5y_A          307 W---NDRQPVDSTSYKIGHLDP-DTEYEISVLLTRPGEGGTG  344 (731)
T ss_dssp             C---EEEEECCSSEEEECSCCT-TCEEEEEEEEECSSTTCSC
T ss_pred             c---eEEeccCcceEEEeCCCC-CCEEEEEEEEEecCCCccc
Confidence            1   112223346788888876 67677788888  877643

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.45  E-value=3.5e-13  Score=84.63  Aligned_cols=82  Identities=18%  Similarity=0.360  Sum_probs=66.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..++   .|.|.++.. +|+|.|+|.+.|..+. .+.
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-~~~   90 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT-SDSGLYTCTVKNSAGS-VSS   90 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEE-EEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCc-ccCEEEEEEEEeCCCc-EeE
Confidence            45567889999999999999999999999999888766666554433   699999997 9999999999998874 455


Q ss_pred             eEEEEee
Q psy14532        196 NVHISVT  202 (258)
Q Consensus       196 ~~~l~v~  202 (258)
                      .+.|.|.
T Consensus        91 ~~~l~V~   97 (99)
T 3puc_A           91 SCKLTIK   97 (99)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.44  E-value=9.8e-13  Score=82.25  Aligned_cols=83  Identities=24%  Similarity=0.507  Sum_probs=66.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcc-cCceEEEEeCCcccCCCcceEE-ecCC--eEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKV-FPNG--TLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~~~~~~~~~~-~~~~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+ ..++  .|.|.++.. +|.|.|+|.+.|..+. .
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~-~   84 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGE-D   84 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCE-E
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCCh-hhCeEEEEEEECCCCe-E
Confidence            3456788899999999999996 8899999999988876665554 2344  799999997 9999999999999874 4


Q ss_pred             cceEEEEee
Q psy14532        194 SQNVHISVT  202 (258)
Q Consensus       194 ~~~~~l~v~  202 (258)
                      ...+.|.|.
T Consensus        85 ~~~~~l~V~   93 (97)
T 2bk8_A           85 SSYAELFVK   93 (97)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEEEEE
Confidence            455666664

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.44  E-value=9e-13  Score=85.30  Aligned_cols=102  Identities=15%  Similarity=0.227  Sum_probs=67.6

Q ss_pred             eeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      ..+..+.+.+|++++|.|.+.+.  +...+.|+|++..+.........      .....+..|..+..+.+|.|.++ +.
T Consensus         8 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~------~~~~~~~~R~~~~~~~sL~I~~v-~~   80 (117)
T 3q0h_A            8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGW------HISPSFKDRVAPGPGLGLTLQSL-TV   80 (117)
T ss_dssp             EESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEE------ECCGGGTTTEEECSTTCEEECSC-CG
T ss_pred             EccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCc------eeCccccCcEEeCCceEEEEeeC-Ch
Confidence            45567889999999999998762  33479999986543221110110      01122334444445789999999 99


Q ss_pred             CCceEEEEEEEeC-CcceeeceEEEEEecCCee
Q psy14532         85 HDRGVYWCTATNK-QGRSSSQNVHISVTGAPFV  116 (258)
Q Consensus        85 ~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~~  116 (258)
                      +|+|.|+|.+... .+... ..+.|.|..+|..
T Consensus        81 ~D~G~Y~C~v~~~~~g~~~-~~~~L~V~~pp~~  112 (117)
T 3q0h_A           81 NDTGEYFCIYHTYPDGTYT-GRIFLEVLESSVA  112 (117)
T ss_dssp             GGCEEEEEEEEEETTCCEE-EEEEEEEECC---
T ss_pred             hhCEEEEEEEEECCCCCeE-EEEEEEEEccCcc
Confidence            9999999998654 45444 7889999887643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.44  E-value=7.8e-13  Score=83.60  Aligned_cols=80  Identities=18%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             ecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE----ec----CCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV----FP----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~----~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ..++.+.|.|.+.|.|.|.++|++++..+........    ..    .+.|.|.++.. +|+|.|+|.|.|..| ..+..
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G-~~~~~   91 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYG-KDEKQ   91 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSC-EEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCc-ccCEEEEEEEEeCCC-cEeEE
Confidence            4577899999999999999999999988776543211    11    23499999997 999999999999998 45577


Q ss_pred             EEEEeecCCc
Q psy14532        197 VHISVTVPPK  206 (258)
Q Consensus       197 ~~l~v~~~p~  206 (258)
                      +.|.|..+|.
T Consensus        92 ~~l~V~~~P~  101 (103)
T 1wwb_X           92 ISAHFMGWPG  101 (103)
T ss_dssp             EEECCSCCCC
T ss_pred             EEEEECCCCC
Confidence            7788776664

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.44  E-value=3.2e-13  Score=87.76  Aligned_cols=96  Identities=21%  Similarity=0.242  Sum_probs=68.6

Q ss_pred             EEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe-------cCCeEEEEecccCCCCc
Q psy14532        107 HISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-------PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       107 ~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~~~~g  179 (258)
                      .|.|..+|.+.......+  .+...|.|.+.|.|.+.+.|++++..+.........       ..+.|.|.++.. +|+|
T Consensus         2 ~L~V~~pP~i~~~~~~~~--~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G   78 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEPEL--RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH-YNNG   78 (118)
T ss_dssp             --CCCCCCCCCCCCCCCC--CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCG-GGCE
T ss_pred             EEEEecCCceeccCCCee--ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCCh-hcCE
Confidence            455666665443322222  256788999999999999999999888766543332       345799999997 9999


Q ss_pred             EEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        180 VYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      .|+|.|.|..|. ....+.|.|...|.
T Consensus        79 ~Y~C~a~N~~G~-~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           79 NYTLIAKNPLGT-ANQTINGHFLKEPF  104 (118)
T ss_dssp             EEEEEEEETTEE-EEEEEEECCSCCCC
T ss_pred             EEEEEEECCCCe-EeeEEEEEEccCCC
Confidence            999999999884 55667777766653

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.44  E-value=3.6e-13  Score=87.26  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE--e--------cCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--F--------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~--~--------~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      .+..+.|.|.+.|.|.|.|+|+++|..+....+...  .        ..+.|.|.++.. .|+|.|+|.|.|..|. ...
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~-~~~   91 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQ-ASA   91 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEE-EEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCC-CCCEEEEEEEEECCCe-EEE
Confidence            567899999999999999999999999876654322  1        135799999997 9999999999999984 556


Q ss_pred             eEEEEeecCCc
Q psy14532        196 NVHISVTVPPK  206 (258)
Q Consensus       196 ~~~l~v~~~p~  206 (258)
                      .+.|.|...|.
T Consensus        92 t~~l~v~~~P~  102 (126)
T 1he7_A           92 SIMAAFMDNPF  102 (126)
T ss_dssp             EEEECCCSCTT
T ss_pred             EEEEEEEcCCC
Confidence            77777776664

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.44  E-value=6.3e-13  Score=82.25  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=63.5

Q ss_pred             eccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ...+.+..+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+..++   .|.|.++.. +|+|.|+|.+.|.    
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~-~D~G~Y~C~a~n~----   82 (93)
T 1waa_A            9 EKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAANT----   82 (93)
T ss_dssp             EECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCG-GGCEEEEEEETTE----
T ss_pred             eccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCCh-hhCEEEEEEECCC----
Confidence            34456778999999999999976 45789999999998877777665544   699999998 9999999999764    


Q ss_pred             ccceEEEEee
Q psy14532        193 SSQNVHISVT  202 (258)
Q Consensus       193 ~~~~~~l~v~  202 (258)
                       .....|.|.
T Consensus        83 -~~sa~L~V~   91 (93)
T 1waa_A           83 -KSAANLKVK   91 (93)
T ss_dssp             -EEEEEEEEE
T ss_pred             -cEEEEEEEE
Confidence             234556554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.44  E-value=2.2e-14  Score=103.39  Aligned_cols=127  Identities=14%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccC---ceEEEEeCCcccCCCcce--------EEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPI---ESITWQKGVQQLPLNRRQ--------KVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~---~~i~W~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      +....+.+|+.++|.|.+.+.++   +.|.| + +.........        .......|.|.++.. +|+|.|+|.+.+
T Consensus        11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~-~D~g~Y~C~~~~   87 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW-NHGKTFTCTAAY   87 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHH-HHTCEEEEEECC
T ss_pred             cChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHc-CCCCeEEEEEec
Confidence            44456789999999999988653   68999 4 3332211000        001123566777776 899999999998


Q ss_pred             CCCCCccceEEE---EeecCCccccCCC-CCccCCCCeeeEEEEeccCCCC-ceeEEEECCEecccc
Q psy14532        188 KQGRSSSQNVHI---SVTVPPKIAPFEF-QPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSA  249 (258)
Q Consensus       188 ~~~~~~~~~~~l---~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~l~~~  249 (258)
                      ..+... ....+   .+..+|.+.+.+. ...+..|+.++|.|.+.+.+|+ +.|.|++||+.+..+
T Consensus        88 ~~~~~~-~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  153 (214)
T 1ow0_A           88 PESKTP-LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  153 (214)
T ss_dssp             SSCSSC-EEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred             CCCCCc-eeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCC
Confidence            765321 11222   2345665544332 2346789999999999655665 699999999998765

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.43  E-value=6.1e-13  Score=99.20  Aligned_cols=122  Identities=15%  Similarity=0.237  Sum_probs=79.8

Q ss_pred             CCCcceecCCcEEEEeeeCccc-----CceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-----IESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-----~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|++++|.|.+.+.+     .+.+.|+++.  ....            ...++.+..   ..+|.|.+++. +
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~  100 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEA-E  100 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-G
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCCh-h
Confidence            4456788999999999998766     4789999853  2111            123333322   23799999997 9


Q ss_pred             CCcEEEEEEEeCCCCCccceEEEEeecCCc-----c-----------------cc-CCCCCccCCCCeeeEEEEeccCCC
Q psy14532        177 DRGVYWCTATNKQGRSSSQNVHISVTVPPK-----I-----------------AP-FEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       177 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-----~-----------------~~-~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      |+|.|.|.+.+..+........|.|...+.     .                 .. .+....+.+|++++|.|.+. +.+
T Consensus       101 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~-~~~  179 (268)
T 1x9q_A          101 DLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTS-GFT  179 (268)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEE-SSC
T ss_pred             HCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEec-Ccc
Confidence            999999999987432223345566654321     0                 01 12345688999999999995 544


Q ss_pred             --CceeEEEEC
Q psy14532        234 --PLTISWLKN  242 (258)
Q Consensus       234 --~~~~~W~~~  242 (258)
                        .+.+.|+++
T Consensus       180 ~~~~~v~W~k~  190 (268)
T 1x9q_A          180 FGHYWMNWVRQ  190 (268)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccccEEEEEEe
Confidence              378999984

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.43  E-value=3.3e-13  Score=88.46  Aligned_cols=102  Identities=17%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      .+...+.++.+.+|++++|.|.+.+.+.+.+.|++.+..+....  .....     ....+.........++|.|.++ +
T Consensus         3 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~-----~~~r~~~~~~~~~~~~L~I~~v-~   74 (124)
T 3rbg_A            3 SLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLN--EYPVL-----KNSKYQLLHHSANQLSITVPNV-T   74 (124)
T ss_dssp             -CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEET--TEECS-----CSSCCEEEEEETTEEEEEESSC-C
T ss_pred             cccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEe--ccccc-----cCCcEEEEeCCCCEEEEEECCC-C
Confidence            45567788899999999999999988889999997543211100  00000     0000000001112468999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      .+|+|.|+|.+.+. +... ..+.|.|..+|.
T Consensus        75 ~~DsG~Y~C~a~n~-g~~~-~~~~l~V~~~P~  104 (124)
T 3rbg_A           75 LQDEGVYKCLHYSD-SVST-KEVKVIVLATMK  104 (124)
T ss_dssp             GGGCEEEEEEEESS-SEEE-EEEEEEEECC--
T ss_pred             hHHCEEEEEEEEcC-CCCc-EEEEEEEEeCCC
Confidence            99999999999998 5555 788888887763

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.43  E-value=1.2e-13  Score=87.88  Aligned_cols=83  Identities=24%  Similarity=0.467  Sum_probs=67.7

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..+..   .+.|.|.++.. +|+|.|+|.+.|..+. .+
T Consensus        20 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~   97 (106)
T 1nct_A           20 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVENSEGK-QE   97 (106)
T ss_dssp             CCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCS-SCCSEEEECCBCSSCB-CC
T ss_pred             CCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCc-hhCEEEEEEEEeCCCe-EE
Confidence            3556778899999999999999999999999998887666655543   35799999997 9999999999999884 55


Q ss_pred             ceEEEEee
Q psy14532        195 QNVHISVT  202 (258)
Q Consensus       195 ~~~~l~v~  202 (258)
                      ..+.|.|.
T Consensus        98 ~~~~l~V~  105 (106)
T 1nct_A           98 AEFTLTIQ  105 (106)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            66666653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.43  E-value=4.2e-13  Score=91.47  Aligned_cols=91  Identities=23%  Similarity=0.357  Sum_probs=70.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec--C--CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP--N--GTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..  +  ..|.|.++.. .|.|.|+|.+.|..+. ..
T Consensus        48 ~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~  125 (154)
T 1fhg_A           48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVNSLGE-AT  125 (154)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEETTEE-EE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCCh-hcCEEEEEEEEECCCe-EE
Confidence            455778999999999999999999999999998887666655532  2  3799999997 9999999999999884 55


Q ss_pred             ceEEEEeecCCccccCC
Q psy14532        195 QNVHISVTVPPKIAPFE  211 (258)
Q Consensus       195 ~~~~l~v~~~p~~~~~~  211 (258)
                      ..+.|.|..+|.....+
T Consensus       126 ~~~~l~V~~~p~~~~~~  142 (154)
T 1fhg_A          126 CTAELLVETMGKEGEGE  142 (154)
T ss_dssp             EEEEEEEECC-------
T ss_pred             EEEEEEEeCcCcCCCCC
Confidence            67788888877655443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.43  E-value=6.5e-13  Score=82.02  Aligned_cols=78  Identities=24%  Similarity=0.483  Sum_probs=63.9

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...      ..+.|.|.++.. +|+|.|+|.+.|..+...+..+.
T Consensus        10 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~   82 (91)
T 3bfo_A           10 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE------TKKLYMVPYVDL-EHQGTYWCHVYNDRDSQDSKKVE   82 (91)
T ss_dssp             CCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC------CSSEEEESSCCG-GGCEEEEEEEECSSCEEECCCEE
T ss_pred             CCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC------CCCeEEECCCCH-HhCEEEEEEEEcCCCCEEeeeEE
Confidence            34566889999999999999999999999998876543      246799999997 99999999999998865566777


Q ss_pred             EEeec
Q psy14532        199 ISVTV  203 (258)
Q Consensus       199 l~v~~  203 (258)
                      |.|..
T Consensus        83 l~V~~   87 (91)
T 3bfo_A           83 IIIDE   87 (91)
T ss_dssp             EEEC-
T ss_pred             EEEeh
Confidence            77753

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.43  E-value=4.4e-13  Score=101.17  Aligned_cols=121  Identities=16%  Similarity=0.347  Sum_probs=81.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~~  173 (258)
                      ....+.+|++++|.|.+.+.+  .+.+.|+++.  ....                 ...++.+..     ..+|.|.+++
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  109 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT  109 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred             CcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence            456788999999999987765  5789999853  2111                 112333321     2469999999


Q ss_pred             cCCCCcEEEEEEEeCC-CC---CccceEEEEeec----------------CCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532        174 KDHDRGVYWCTATNKQ-GR---SSSQNVHISVTV----------------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDP  233 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~-~~---~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  233 (258)
                      . +|+|.|.|.+.+.. +.   .......|.|..                ++.+...+....+.+|++++|.|.+ .+.|
T Consensus       110 ~-~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~~  187 (291)
T 2gki_A          110 S-EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS-SQSL  187 (291)
T ss_dssp             G-GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE-SSCC
T ss_pred             H-HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc-CCcc
Confidence            7 99999999999864 11   112334666665                1222223434568899999999999 4665


Q ss_pred             Cc------eeEEEEC
Q psy14532        234 PL------TISWLKN  242 (258)
Q Consensus       234 ~~------~~~W~~~  242 (258)
                      .+      .+.|+++
T Consensus       188 ~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             EETTTTEECEEEEEE
T ss_pred             ccccccceeEEEEEE
Confidence            54      8999985

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.43  E-value=8.8e-13  Score=95.02  Aligned_cols=124  Identities=25%  Similarity=0.357  Sum_probs=89.7

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....  +..+.   ..+.|.|.++.. +|.|.|+|.+.|..+. 
T Consensus        24 ~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~-  101 (215)
T 3mtr_A           24 GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQ-  101 (215)
T ss_dssp             CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSG-GGCEEEEEEEECSSCE-
T ss_pred             CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCCh-hhCeEEEEEEEECCCc-
Confidence            3444678899999999999999999999999998876552  33332   245799999997 9999999999999884 


Q ss_pred             ccceEEEEeecCCccccCCCCCccCCCCeeeEEEEec---cCCCCc--eeEEEECCEe
Q psy14532        193 SSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT---KGDPPL--TISWLKNGLP  245 (258)
Q Consensus       193 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~---~~~p~~--~~~W~~~g~~  245 (258)
                      .+..+.|.+..+|..+.....  ...+..+.|.|...   .+.|..  .+.|.+++..
T Consensus       102 ~~~~~~l~v~~~P~~p~~~~~--~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~  157 (215)
T 3mtr_A          102 ESLEFILVQADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE  157 (215)
T ss_dssp             EEEEEEEEECCCCCCCEEEEE--EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCC
T ss_pred             eEEEEEEEECCCCCCCcceEE--EEecceEEEEEecCCccCCCceEEEEEEEEECCCC
Confidence            456677888776654432211  23467789999752   223433  4788887653

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.42  E-value=5.4e-14  Score=92.00  Aligned_cols=100  Identities=22%  Similarity=0.340  Sum_probs=72.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.|.. +....+.+|+++.|.|.+.+.|.+. +.|++++..+.... ..++.+.....         ......+|.|.+
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~-~~~~~~~~~~~---------~~~~~~~L~I~~   82 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT-SGRYTVETIST---------EEGVISTLTISN   82 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEE-ETTEEEEEEEE---------TTEEEEEEECTT
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCC-CCCEEEEEecC---------CCceEEEEEEcC
Confidence            688877 7888999999999999999999886 99999987765421 11221110000         000123799999


Q ss_pred             cccCCCc-eEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         81 VQKDHDR-GVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        81 ~~~~~d~-G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      + ...|. |.|+|.+.|..|... ..+.|.|..++
T Consensus        83 v-~~~D~~G~Y~C~a~N~~G~~~-~~~~l~V~~~~  115 (122)
T 2cry_A           83 I-VRADFQTIYNCTAWNSFGSDT-EIIRLKEQGSE  115 (122)
T ss_dssp             C-CHHHHHSCEEEEEECSSCEEE-EEECCCCSCSS
T ss_pred             C-ChhhCCceEEEEEECCCCeEE-EEEEEEECCCC
Confidence            9 98998 999999999998877 77777776543

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=5.9e-13  Score=83.58  Aligned_cols=82  Identities=20%  Similarity=0.376  Sum_probs=65.5

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      ....+.+|+.+.|.|.+.+.| +.+.|++++..+....+..+. ...|.|.++.. +|.|.|+|.+.|..+. ....+.|
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~~~L~i~~v~~-~D~G~Y~C~a~n~~g~-~~~~~~l   86 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT-GEEVEVQDSVP-ADSGLYACVTSSPSGS-DTTYFSV   86 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC-SSEEEETTCCT-TTCEEEEEEEEETTEE-EEEEEEE
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE-CCEEEEccCCH-HHCEEEEEEEEeCCce-EEEEEEE
Confidence            345678999999999998876 799999999888766655554 67899999997 9999999999998874 4556666


Q ss_pred             EeecCC
Q psy14532        200 SVTVPP  205 (258)
Q Consensus       200 ~v~~~p  205 (258)
                      .|...|
T Consensus        87 ~V~~~~   92 (99)
T 2cr3_A           87 NVSDAL   92 (99)
T ss_dssp             CBCSCC
T ss_pred             EEecCC
Confidence            666543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.4e-13  Score=87.14  Aligned_cols=87  Identities=28%  Similarity=0.519  Sum_probs=69.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE--ecC--CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--FPN--GTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~--~~~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+........  ..+  .+|.|.++.. +|+|.|+|.+.|..+. .+
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~-~~   93 (110)
T 2dm3_A           16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS-RDAGIYTCIATNRAGQ-NS   93 (110)
T ss_dssp             CCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCG-GGCSBBCEEEECSSCE-EE
T ss_pred             CCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCc-ccCEEEEEEEECCCCE-EE
Confidence            4567788999999999999999999999999988765543332  222  3799999997 9999999999999884 56


Q ss_pred             ceEEEEeecCCcc
Q psy14532        195 QNVHISVTVPPKI  207 (258)
Q Consensus       195 ~~~~l~v~~~p~~  207 (258)
                      ..+.|.|..+|..
T Consensus        94 ~~~~l~V~~~p~~  106 (110)
T 2dm3_A           94 FSLELVVAAKESG  106 (110)
T ss_dssp             ECCEEEEECCCCS
T ss_pred             EEEEEEEeCCCCC
Confidence            7778888876653

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.6e-12  Score=82.26  Aligned_cols=82  Identities=22%  Similarity=0.358  Sum_probs=65.3

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....  ++.+..+   ..|.|.++.. +|+|.|+|.+.|     
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n-----   85 (103)
T 1x44_A           13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSVMTTG-----   85 (103)
T ss_dssp             CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEEEETT-----
T ss_pred             cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCc-ccCEEEEEEECC-----
Confidence            456678889999999999987 778999999998887665  4455443   4799999997 999999999976     


Q ss_pred             ccceEEEEeecCCc
Q psy14532        193 SSQNVHISVTVPPK  206 (258)
Q Consensus       193 ~~~~~~l~v~~~p~  206 (258)
                      .+....|.|..+|.
T Consensus        86 ~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 GQSSAKLSVDLKSG   99 (103)
T ss_dssp             EEEEEEEEEECCCS
T ss_pred             CcEEEEEEEeCCCC
Confidence            35667777877664

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.41  E-value=8.2e-13  Score=82.91  Aligned_cols=82  Identities=23%  Similarity=0.396  Sum_probs=64.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc-eEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR-QKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+..... .....++   +|.|.++.. +|+|.|+|.+.|..+. ..
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~g~-~~   89 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER-GDAGFYTCKAVNEYGA-RQ   89 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCG-GGCEEEEEEEEETTEE-EE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCc-CCCEEEEEEEEECCCc-ee
Confidence            4456788999999999999999999999999988765433 3333333   699999997 9999999999999874 44


Q ss_pred             ceEEEEee
Q psy14532        195 QNVHISVT  202 (258)
Q Consensus       195 ~~~~l~v~  202 (258)
                      ..+.|.|.
T Consensus        90 ~~~~l~V~   97 (99)
T 1u2h_A           90 CEARLEVR   97 (99)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            55666664

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.4e-12  Score=84.50  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcc---cCceEEEEeCCccc-C--CCcceEEe---------cCCeEEEEecccCCCCc
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGY---PIESITWQKGVQQL-P--LNRRQKVF---------PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~i~W~~~~~~~-~--~~~~~~~~---------~~~~l~i~~~~~~~~~g  179 (258)
                      ++..+..+.+.+|+.++|.|.+.+.   |.|.|.|+|+.... .  ...+..+.         ....|.|.++.. .|+|
T Consensus        10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DaG   88 (126)
T 2dav_A           10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFAG   88 (126)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSCE
T ss_pred             EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc-ccCE
Confidence            3445677889999999999998764   78999999974210 0  11222221         135799999997 9999


Q ss_pred             EEEEEEEeCCCCCccceEEEEeec
Q psy14532        180 VYWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      .|+|+|.|..+ ..+..+.|.|..
T Consensus        89 ~Y~Cevsn~~g-~~~~~~~L~V~~  111 (126)
T 2dav_A           89 NYRCEVTYKDK-FDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEECSSC-EEEECCEEEEEC
T ss_pred             EEEEEEEeCCC-cEEEEEEEEEEe
Confidence            99999999976 466778888888

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.2e-12  Score=84.98  Aligned_cols=97  Identities=21%  Similarity=0.375  Sum_probs=67.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.+.... ...  ..+...|.|.+.|.|.+.+.|+|+|..+....   +.......         ......++|.|.++
T Consensus         8 pP~i~~~~-~~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~---------~~~~~~~~L~i~~~   72 (118)
T 1wwc_A            8 PPRVVSLE-EPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK---IIHVEYYQ---------EGEISEGCLLFNKP   72 (118)
T ss_dssp             CCCCCCCC-CCC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSS---SEEEEEEE---------CSSEEEEEEEEESC
T ss_pred             CCceeccC-CCe--eccceEEEEEeeeeCCCeEEEEECCEECCCCC---ceeEEEec---------cCccccEEEEECCC
Confidence            56654432 222  33667899999999999999999998886542   11111000         00013457999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|...|.
T Consensus        73 -~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~~~P~  104 (118)
T 1wwc_A           73 -THYNNGNYTLIAKNPLGTAN-QTINGHFLKEPF  104 (118)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEECCSCCCC
T ss_pred             -ChhcCEEEEEEEECCCCeEe-eEEEEEEccCCC
Confidence             99999999999999998877 777887776653

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=9.6e-13  Score=83.26  Aligned_cols=82  Identities=21%  Similarity=0.393  Sum_probs=67.0

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+..++   .|.|.++.. +|+|.|+|.+.|     .+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n-----~~   86 (103)
T 2edf_A           14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL-KDAGEYTCEVEA-----SK   86 (103)
T ss_dssp             CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCT-TTCSEEEEECSS-----CE
T ss_pred             cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCc-ccCEEEEEEEcc-----CC
Confidence            455677889999999999987 77899999999988776666665444   599999997 999999999998     24


Q ss_pred             ceEEEEeecCCc
Q psy14532        195 QNVHISVTVPPK  206 (258)
Q Consensus       195 ~~~~l~v~~~p~  206 (258)
                      ..+.|.|..+|.
T Consensus        87 ~~~~l~V~~~p~   98 (103)
T 2edf_A           87 STASLHVEEKAS   98 (103)
T ss_dssp             EEEEEEECCCSS
T ss_pred             cEEEEEEeCCCC
Confidence            667788877664

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.40  E-value=1.3e-12  Score=84.09  Aligned_cols=95  Identities=24%  Similarity=0.479  Sum_probs=73.4

Q ss_pred             ceEEEEEecCC--eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCC
Q psy14532        104 QNVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDR  178 (258)
Q Consensus       104 ~~~~l~v~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~  178 (258)
                      ..+.|.|...|  +...+....+.+|+.+.|.|.+.+.  +.+.|++++..+....++.+..++   .|.|.++.. +|+
T Consensus         9 ~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~   85 (113)
T 2edh_A            9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVA-EDA   85 (113)
T ss_dssp             CCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCS-TTC
T ss_pred             EEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCCh-hhC
Confidence            45566666443  3334566788999999999999764  689999999988877777776666   799999997 999


Q ss_pred             cEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        179 GVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       179 g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      |.|+|.+    + ..+..+.|.|..+|.
T Consensus        86 G~Y~C~a----~-~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           86 GEYLCMC----G-KERTSAMLTVRAMPS  108 (113)
T ss_dssp             EEEEEEE----T-TEEEEEEEEECCCCC
T ss_pred             EEEEEEe----C-CCCEEEEEEEeCCCC
Confidence            9999999    2 455667888887664

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.40  E-value=9.6e-12  Score=86.29  Aligned_cols=160  Identities=16%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ..+...|.+..|..|+++.|+|.... +.+. +.|...   +.      +....             ....-..|.|.++
T Consensus         3 f~v~v~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet~---l~------~~~~~-------------~g~~w~~l~l~~v   59 (192)
T 1zxq_A            3 FEVHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLETS---LN------KILLD-------------EQAQWKHYLVSNI   59 (192)
T ss_dssp             CCEEEESSEEEECTTEEEEEEEEESC-SSCSEEEEECS---SE------EEEEE-------------EETTEEEEEEEEE
T ss_pred             cEEEEeCCCcEEeCCCcEEEEEECCC-CCccccccccc---cC------ceEEc-------------CCCCeEEEEEecc
Confidence            34667888899999999999999864 4443 455431   10      00000             0000124889999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCC--CcceecCCcEEEEeeeCc-ccCc--eEEEEeCCcccCCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG--NVSAIAGEPLYLGCPVAG-YPIE--SITWQKGVQQLPLN  156 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~g~~~~l~C~~~~-~~~~--~i~W~~~~~~~~~~  156 (258)
                       +  |.|.|.|.+.-...... ..+.|+|+.+|......  +..+.+|+.++|.|.+.+ .|..  .+.|++++..+...
T Consensus        60 -s--~~g~~~C~~~c~~~~~~-~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~  135 (192)
T 1zxq_A           60 -S--HDTVLQCHFTCSGKQES-MNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYE  135 (192)
T ss_dssp             -C--SCEEEEEEEEETTEEEE-EEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEE
T ss_pred             -c--cCCeeEEEEECCCcceE-EEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeec
Confidence             6  78999999987655544 88999999887443322  346789999999999975 6655  58999988776421


Q ss_pred             cce---EEecCCeEE-EEecccCCCCcEEEEEEEeCC
Q psy14532        157 RRQ---KVFPNGTLL-IENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       157 ~~~---~~~~~~~l~-i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .-.   ......++. ...+.++++...|+|+|.-..
T Consensus       136 ~f~~~~~~~~~~tv~~~~~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          136 TFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             ECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ccccccCcCcceEEEEEEecchhhCCceEEEEEEecC
Confidence            100   000111222 223445344449999999766

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.40  E-value=2e-11  Score=87.20  Aligned_cols=173  Identities=18%  Similarity=0.288  Sum_probs=98.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|+|.....-...+.||+.  |+..       +..+.......-.++.|....   .+.+|+|.
T Consensus         4 lTQsP~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P-------~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs   76 (259)
T 4f9l_D            4 LTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIP-------KLLIYRASNLHTGVPSRFSGSGSATGFTLTIS   76 (259)
T ss_dssp             EEEECSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCE-------EEEEETTTEECTTCCTTEEEEEETTEEEEEEE
T ss_pred             EEccCCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCC-------EEEEECCCccCCCCCCCEEeeccCCeEEEEEc
Confidence            45667888999999999999876543446899963  3211       111111111111122222222   23469999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec----C------C-------------eeccCCCcceecCCcEEEEeee
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----A------P-------------FVRPMGNVSAIAGEPLYLGCPV  136 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~------~-------------~~~~~~~~~~~~g~~~~l~C~~  136 (258)
                      ++ +.+|++.|.|............-.+|.+..    +      +             .+.......+.+|+++.|.|.+
T Consensus        77 ~l-q~eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~a  155 (259)
T 4f9l_D           77 SL-QPEDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKA  155 (259)
T ss_dssp             SC-CGGGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEE
T ss_pred             cc-ChhhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEee
Confidence            99 999999999986543211110111222211    0      0             0111122357789999999999


Q ss_pred             Cccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEecccCCCCcEEEEEEE
Q psy14532        137 AGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       137 ~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      .|..  .-.+.|+|.  |+.+      .           ...++.+..+.     .|.|.+++. +|.+.|.|.-.
T Consensus       156 SG~tfs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~-eDTAvYYCAr~  230 (259)
T 4f9l_D          156 SGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTS-EDSAVYYCSRE  230 (259)
T ss_dssp             ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred             eCCCcccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCCh-HHCEEEEEEEe
Confidence            8754  336778773  2221      1           12234443321     378889987 99999999654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=82.53  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=63.5

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      ..+.+|+.+.|.|.+.+.+.+ +.|++++..+....++.+...   ..|.|.++.. +|+|.|+|.+.|..     ..+.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~~-----~~~~   92 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV-QDSGEFECRTEGVS-----AFFG   92 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCT-TTCEEEEEECSSCC-----CCEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCCh-hhCEEEEEEECCce-----EEEE
Confidence            578899999999999998888 999999988876666555433   3699999997 99999999998862     3577


Q ss_pred             EEeecCCc
Q psy14532        199 ISVTVPPK  206 (258)
Q Consensus       199 l~v~~~p~  206 (258)
                      |.|..+|.
T Consensus        93 l~V~~~P~  100 (104)
T 2e6p_A           93 VTVQDPSG  100 (104)
T ss_dssp             EEEECCCC
T ss_pred             EEEcCCCC
Confidence            78877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-12
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-10
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-10
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	8e-10
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	8e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	9e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	9e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-09
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	9e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-09
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	8e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	8e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	5e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-04
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-08
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	1e-08
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	6e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-08
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	7e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-06
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	2e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	5e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.003
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	8e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	6e-05
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-06
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	6e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	3e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	7e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	4e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	6e-06
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	4e-06
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	6e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	4e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	8e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	9e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	9e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.002
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	1e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.002
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	4e-05
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	1e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.003
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	2e-04
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	4e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	7e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.002
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	8e-04
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.003
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.001
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	0.003
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-12
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIE 170
             ++   +    AGE + L   V G    + TW K  +Q+  +   KV        L I 
Sbjct: 2   QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTIL 61

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP 214
             +++   G Y     NK G   +  V+++V   P   P    P
Sbjct: 62  AARQE-HCGCYTLLVENKLGSRQA-QVNLTVVDKPD--PPAGTP 101

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 18/112 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           PQ+I     Q ++ G  V L    TG      +W      +    H              
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH-------------- 46

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
              + +       L I   +++   G Y     NK G   +  V+++V   P
Sbjct: 47  --MKVENSENGSKLTILAARQE-HCGCYTLLVENKLGSRQA-QVNLTVVDKP 94

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 58.6 bits (141), Expect = 4e-12
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
            +P   +    G+ + + C V G P  ++ W    + L   R      +  L+I+ V+  
Sbjct: 7   QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT--VTDSGLVIKGVKNG 64

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTV 203
            D+G Y C ATN+ G    +     V V
Sbjct: 65  -DKGYYGCRATNEHGDKYFE---TLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 23/100 (23%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
              ++ G  V++ C  TG P P++ W  +  PL+G R                       
Sbjct: 12  VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA---------------------T 50

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             +  L+I+ V+   D+G Y C ATN+ G        + V
Sbjct: 51  VTDSGLVIKGVKNG-DKGYYGCRATNEHGDKYF-ETLVQV 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 7e-12
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 113 AP-FVRPM----GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PN 164
           AP +           +  A   +   CP  G P+ ++ W K  ++     R   +     
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
              LI       D+G Y C   N+ G  +    H+ V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 17/99 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +     V  +C A GNP P + W  +G     +      ++                 
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN--------------- 59

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                LI       D+G Y C   N+ G  +    H+ V
Sbjct: 60  -QHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDV 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 1e-11
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN 171
           AP     + + +   G   +    V G P     W K   ++  + R   +     + E 
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 172 VQKD---HDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
           V +D    D       A N  G +SS   H  + V  K
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSS---HAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 5e-08
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++  +   QT+  G     +    G P P   W  +G  +            +   + +
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                            +V    D       A N  G +SS +  + V  
Sbjct: 65  I---------------RDVTG-EDSASIMVKAINIAGETSS-HAFLLVQA 97

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 5/99 (5%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            +   G  V   C    +  PHI W             +    G   ++ L         
Sbjct: 15  ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD----GLPYLKVLKAAGVNTTD 70

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
               +L        D G Y C A N  G S   +  ++V
Sbjct: 71  KEIEVLYIRNVTFEDAGEYTCLAGNSIGISFH-SAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 18/97 (18%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP----------------N 164
           N S + G  +   C V       I W K V++          P                 
Sbjct: 14  NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 73

Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
             L I NV  + D G Y C A N  G S   +  ++V
Sbjct: 74  EVLYIRNVTFE-DAGEYTCLAGNSIGISFH-SAWLTV 108

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 5e-11
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            T+  G PV L C   G   P I W  DG  +                         +  
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY--------------IPVSEQH 51

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
             G L +++V++  D G YWC   +      SQ V ++V G
Sbjct: 52  WIGFLSLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-10
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-----FPNGT 166
           GAP       ++   G+P+ L C V G     I W K    +    +  +        G 
Sbjct: 1   GAP-----VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 55

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
           L +++V++  D G YWC   +      SQ V ++V 
Sbjct: 56  LSLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVE 90

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 108 ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN--- 164
           ++V G P +       A+ GE   + C +   P          + +  +     +     
Sbjct: 2   LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI 61

Query: 165 -------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
                   TL I N+ +   + +Y CTA N  G S ++ + +         P
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSEMSGP 112

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 5e-09
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P +I     Q    G    +KC     P P                +          +  
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAW---------SWKENVLESGTSGRYT 57

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
                 +     TL I N+ +   + +Y CTA N  G S ++ + +   G+    P
Sbjct: 58  VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSEMSGP 112

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.7 bits (128), Expect = 3e-10
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
           F+          G+     C V       +TW K  ++L  + +     NG    L I  
Sbjct: 4   FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 63

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           V+   D+G Y   A N  G      V ++VT   
Sbjct: 64  VK-GDDKGEYTVRAKNSYGTKEE-IVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 18/112 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+ I K     +  G   +  C    +  P ++W  D   L       K   G       
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG------- 54

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                     +  L I  V+   D+G Y   A N  G      V ++VT   
Sbjct: 55  ---------NDYGLTINRVK-GDDKGEYTVRAKNSYGTKEE-IVFLNVTRHS 95

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.6 bits (125), Expect = 7e-10
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
           ++  + +  A  G  L   C  +G P  ++ W +  Q L  ++ +     G L    +  
Sbjct: 4   WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVSGGELRFSKLVL 62

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISV 201
           +   G+Y C A NK G   + +  ++V
Sbjct: 63  ED-SGMYQCVAENKHGTVYA-SAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P  +          G  +   C+A+G P P + W  DG P                    
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP-------------------- 41

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             ++ +     G L    +  +   G+Y C A NK G   + +  ++V
Sbjct: 42  LASQNRIEVSGGELRFSKLVLED-SGMYQCVAENKHGTVYA-SAELTV 87

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 8e-10
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGT------- 166
           +++     S +AG+P  L CPV        +TW K      +    +             
Sbjct: 6   YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFF 65

Query: 167 -LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            L  E V  + D G Y C+A  +     S +  + VT
Sbjct: 66  ILHFEPVLPN-DNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPL 64
           I +  + ++  G P  L+C        PH++W            + +    E +     +
Sbjct: 7   IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFI 66

Query: 65  NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
              + V PN            D G Y C+A  +     S +  + VT
Sbjct: 67  LHFEPVLPN------------DNGSYRCSANFQSNLIESHSTTLYVT 101

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (125), Expect = 8e-10
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 16/101 (15%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           +  T   G  V+L C A G P P +SW  DG P+  +  +++  I               
Sbjct: 13  VNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI--------------- 57

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
              + + L       +D   Y C A NK G   + ++H+ V
Sbjct: 58  FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA-SIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 9e-09
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKG----VQQLPLNRRQKVFPNGTLLIENVQ 173
            + N +A  G+ + L C   G+P  +++W K       +   + +     + + L     
Sbjct: 11  SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 70

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
             +D   Y C A NK G   + ++H+ V  
Sbjct: 71  DKNDEAEYVCIAENKAGEQDA-SIHLKVFA 99

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 9e-10
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP------NGT 166
            P    + NV   AG+     C   G  +           +     +++          +
Sbjct: 2   TPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 61

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
             + N  K  D G Y C    + G   S    + V
Sbjct: 62  FNVVNTTKR-DAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-08
 Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 14/99 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
             +  G   + +C A G         L G  +     +                      
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS-------------RR 57

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
              +  + N  K  D G Y C    + G   S    + V
Sbjct: 58  FIASFNVVNTTKR-DAGKYRCMIRTEGGVGISNYAELVV 95

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P      +  ++  G    L C    G+P    SW  DG  +     +        + + 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK--------KTRA 54

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVT 111
              +       +G L+ + V    D G Y+C A N  G +  S+  H+   
Sbjct: 55  FMNSSFTIDPKSGDLIFDPVTAF-DSGEYYCQAQNGYGTAMRSEAAHMDAV 104

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKV-----------F 162
                   S   G    L C    G P    +W K    +     +K             
Sbjct: 5   KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 64

Query: 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVT 202
            +G L+ + V    D G Y+C A N  G +  S+  H+   
Sbjct: 65  KSGDLIFDPVTAF-DSGEYYCQAQNGYGTAMRSEAAHMDAV 104

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 9e-06
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
           VPP          +  G+RA + C    G PP   SW K+G+ +L+
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT 46

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
             +   +  A+ G+ + L C   G P+  I W+K          + +     L I+NV  
Sbjct: 8   KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS---QTSKWLSSEPLLHIQNVDF 64

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           + D G Y C A N +GR +       + +
Sbjct: 65  E-DEGTYECEAENIKGRDTY---QGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 25/109 (22%)

Query: 3   PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P +  KF        G  V+L+C A GNP P I W+                        
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS------------------- 45

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                 + +     L I+NV  + D G Y C A N +GR +     I +
Sbjct: 46  ---QTSKWLSSEPLLHIQNVDFE-DEGTYECEAENIKGRDTY-QGRIII 89

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-----NGTLLIENVQKD 175
           ++ A AG+   + C     P+    + K  + +  N   ++          LL +    +
Sbjct: 12  DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 71

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISV 201
            +  VY C   N  G+    ++ ++V
Sbjct: 72  DEG-VYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 17/110 (15%)

Query: 3   PQLIYKFIQQ--TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
            + + +++ +    + G    + C+   NP  + ++  +G  + G+  +           
Sbjct: 2   GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDR---------- 51

Query: 61  QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                 R        LL +    + +  VY C   N  G+    ++ ++V
Sbjct: 52  ----ITRHNRTSGKRLLFKTTLPEDEG-VYTCEVDNGVGKPQKHSLKLTV 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 16/102 (15%)

Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLP----------LNRRQKVFPNGTLLIENVQ 173
           A+      +   V G P  S+ W      L                +   +G L +    
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD 215
              + G Y   A N  G++S+ ++  +        PFEF P+
Sbjct: 72  HV-NNGNYTLLAANPFGQASA-SIMAAFMDN----PFEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 14/110 (12%)

Query: 12  QTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
             L     +   CI     G P P + W  +G  L                 +       
Sbjct: 7   VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF---------IFTEFLEPAAN 57

Query: 69  KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
           +   +G L +       + G Y   A N  G++S+ ++  +    PF   
Sbjct: 58  ETVRHGCLRLNQPTHV-NNGNYTLLAANPFGQASA-SIMAAFMDNPFEFN 105

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 4/91 (4%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL---PLNRRQKVFPNGTLLIEN 171
                  V      P  L C + G         K   +      +        G+L+   
Sbjct: 5   LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLR 64

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            Q   D G Y C A    G +SS+ +    T
Sbjct: 65  PQAS-DEGHYQCFAETPAGVASSRVISFRKT 94

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 8e-08
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 17/109 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P L  +  +   +   P  L+CI  GN                            +    
Sbjct: 3   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDG----------------KSYNW 46

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
             +        G+L+    Q   D G Y C A    G +SS+ +    T
Sbjct: 47  QEHNAALRKDEGSLVFLRPQAS-DEGHYQCFAETPAGVASSRVISFRKT 94

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 12/111 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P      I  +   G    L C    G+P    +W  DG  +  +    +          
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN------ 56

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVT 111
              +        G L+ + +    D G Y C A N  G   +S  V +   
Sbjct: 57  ---SSYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYGTPMTSNAVRMEAV 103

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 8e-07
 Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 121 NVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKV----------FPNGTLLI 169
             SA  G    L C    G P    TW K    +P N +                G L+ 
Sbjct: 11  PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 70

Query: 170 ENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVT 202
           + +    D G Y C A N  G   +S  V +   
Sbjct: 71  DPLSA-SDTGEYSCEARNGYGTPMTSNAVRMEAV 103

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
           VPP             G+RA + C    G PP   +W K+G+ + +     R
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTR 52

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 3e-09
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 108 ISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNG 165
           ++    P      G ++++ G+ + L CP        ++ W         +  +      
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60

Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
            LL+ +VQ   D G Y C    +   +    VH+ V V
Sbjct: 61  RLLLRSVQLH-DSGNYSCYRAGRPAGT----VHLLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 19/97 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            T  PG  V+L C             +   P AG                      +   
Sbjct: 16  LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP------------------SRWAG 57

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 108
               LL+ +VQ   D G Y C    +   +    V +
Sbjct: 58  MGRRLLLRSVQLH-DSGNYSCYRAGRPAGTVHLLVDV 93

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-09
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
            +  G  + L    +G+P P + W+                  E           +K+  
Sbjct: 20  VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79

Query: 73  -------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                             +E  +K+ D GVY  T  N  G     N+ + V
Sbjct: 80  ETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVG-EDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-07
 Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 36/127 (28%)

Query: 109 SVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG--- 165
            +      R    +  +AG  L L  P++G P  ++ WQK + Q      +         
Sbjct: 6   KIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDT 65

Query: 166 -----------------------------TLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196
                                           +E  +K+ D GVY  T  N  G      
Sbjct: 66  GDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQV-- 122

Query: 197 VHISVTV 203
            +++V V
Sbjct: 123 -NLTVKV 128

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.3 bits (119), Expect = 6e-09
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 115 FVRPMGNVSAIAG---EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGTLLIE 170
           F     +     G   E + L C     P  +  W+    +L +    +     G L+I 
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS 66

Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHI 199
           N  K  D G Y C ATN +G   S+   +
Sbjct: 67  NPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
                V+L C A  NP     WK++G                           +     G
Sbjct: 20  SAEEKVTLTCRARANPPATYRWKMNGTE------------------LKMGPDSRYRLVAG 61

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 108
            L+I N  K  D G Y C ATN +G   S+   +
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR----QKVFPNGTL 167
            P F + + ++  + G      C V GYP   + W K    +  +R          N +L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
            I  V  D D   Y C A N  G ++       + V
Sbjct: 68  TISEVCGD-DDAKYTCKAVNSLGEATC---TAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 17/108 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P      +   +  G      C   G P P + W  D  P+   RH   +   E      
Sbjct: 9   PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 68

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                             V  D D   Y C A N  G ++     + V
Sbjct: 69  I---------------SEVCGD-DDAKYTCKAVNSLGEATC-TAELLV 99

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ---QLPLNRRQKVFPNGTLLIEN 171
            +    +++   GE     C   G P+ ++TW +  Q       ++        T  I +
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           VQ   D G Y     N +G+  +     ++T+
Sbjct: 62  VQAS-DEGNYSVVVENSEGKQEA---EFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 22/107 (20%)

Query: 8   KFIQQ----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           + + +    T+  G      C   G P P ++W   G  L+                   
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR--------------- 45

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            ++        T  I +VQ   D G Y     N +G+  +    +++
Sbjct: 46  -HQVTTTKYKSTFEISSVQAS-DEGNYSVVVENSEGKQEA-EFTLTI 89

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 120 GNVSAIAGEPLYLGCP--VAGYPIESITWQKGVQQ----------LPLNRRQKVFPNGTL 167
           G V    G  + L  P       I+ + W++G                +   ++  NG L
Sbjct: 3   GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 62

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
            I+N+ +D D G Y  T  +  G     N  + + +
Sbjct: 63  KIKNLTRD-DSGTYNVTVYSTNGTRIL-NKALDLRI 96

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 6e-08
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 17  GPPVSLKC--IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
           G  ++L        +    + W+         R        + +++    +   ++  NG
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWE---------RGSTLVAEFKRKMKPFLKSGAFEILANG 60

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISV 110
            L I+N+ +D D G Y  T  +  G    ++ + + +
Sbjct: 61  DLKIKNLTRD-DSGTYNVTVYSTNGTRILNKALDLRI 96

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 17/110 (15%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIES---ITWQKGVQQLPLNRRQKVFP-------- 163
           F+      +   GE +     V    +     I W KG      ++  K           
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 164 ----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
                  + I   + +   G Y C  T K    S  +  + V       P
Sbjct: 63  SRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSC-SFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 16/117 (13%)

Query: 9   FIQ----QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           FI+     T++ G  ++             P I W    +     +     ++ E     
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF--- 59

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
                R        + I   + +   G Y C  T K    S  +  + V  +    P
Sbjct: 60  ----ERHSRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSC-SFDLEVHESTGTTP 110

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ 173
            V    + S   G  +   C   +  P  ++ W +       +R   +  NG L I NVQ
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGILTIRNVQ 62

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISV 201
                  Y CT +N           + V
Sbjct: 63  PSDAG-TYVCTGSNMFAMDQG-TATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 24/100 (24%)

Query: 12  QTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
           Q+++PG  V+  C A + +P   + W          R                      +
Sbjct: 12  QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---------------------M 50

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
             NG L I NVQ       Y CT +N           + V
Sbjct: 51  DFNGILTIRNVQPSDAG-TYVCTGSNMFAMDQG-TATLHV 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-----FPNGTLLI 169
             + + + +A  GE + L C V+      + W K  +++    + +           L+I
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDAN-VKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 170 ENVQKDHDRGVYWCTATNKQG 190
           E   K  D   Y    T  Q 
Sbjct: 62  EGATK-ADAAEYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 16/88 (18%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           T   G  V L+C        ++ W  +G  +                      R +   
Sbjct: 10 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSR--------------YRIRVEG 54

Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQG 99
              L+IE   K  D   Y    T  Q 
Sbjct: 55 KKHILIIEGATK-ADAAEYSVMTTGGQS 81

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 21/91 (23%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK--GVQQLPLNRRQKVFPNGTLLIENV 172
           F           GE   + C V      +I W+       L  + R  V  N  L I  +
Sbjct: 4   FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGI 63

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           +K  D G Y C               I V V
Sbjct: 64  KKT-DEGTYRCEGRILAR-GEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 19/100 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
           Q  + G    + C    +  P I WK  G  +   +      +    +Q           
Sbjct: 11  QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ----------- 59

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQ-GRSSSQNVHISV 110
                 I  ++K  D G Y C       G  + +++ + V
Sbjct: 60  ------IRGIKKT-DEGTYRCEGRILARGEINFKDIQVIV 92

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 4e-08
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 126 AGEPLYLGCP------VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
                 L CP           +  + W K  + L L+          L++ NV + H RG
Sbjct: 13  VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKH-RG 71

Query: 180 VYWCTATNKQ-GRSSSQNVHISVTVPPKIAP 209
            Y C A+    G+       I      +  P
Sbjct: 72  NYTCHASYTYLGKQYPITRVIEFITLEENKP 102

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 29/112 (25%)

Query: 12  QTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
           Q L       L C          N  P + W  D                    + L L+
Sbjct: 9   QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC-------------------KPLLLD 49

Query: 66  RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTGAP 114
                     L++ NV + H RG Y C A+          ++ +        
Sbjct: 50  NIHFSGVKDRLIVMNVAEKH-RGNYTCHASYTYLGKQYPITRVIEFITLEEN 100

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 4e-08
 Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 12/85 (14%)

Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
           GN +          C   G P+  +   K                              G
Sbjct: 12  GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR-----------DLEG 60

Query: 180 VYWCTATNKQGRSSSQNVHISVTVP 204
            Y C A + QG   ++ V ++V  P
Sbjct: 61  TYLCRARSTQG-EVTREVTVNVLSP 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 7e-04
 Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 31/99 (31%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
            T       +  C A GNP P +                                +   F
Sbjct: 14  WTWPENSQQTPMCQAWGNPLPELKC-----------------------------LKDGTF 44

Query: 72  PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           P               G Y C A + QG   ++ V ++V
Sbjct: 45  PLPIGESVT-VTRDLEGTYLCRARSTQG-EVTREVTVNV 81

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 7e-08
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIES---ITWQKGVQQLPLNRRQKVFP-------- 163
           FV    +     G  +     VAG  +     + W KG      ++  +           
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 164 ----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
                  L I + Q     G Y C  + K     S N +++V 
Sbjct: 67  SKVYLFELHITDAQPA-FTGGYRCEVSTKDKFDCS-NFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 12  QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
             +  G  ++      G      P + W    +     +     ++ ++         R 
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS-------YDRA 66

Query: 69  KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
                  L I + Q     G Y C  + K     S N +++V  A
Sbjct: 67  SKVYLFELHITDAQPA-FTGGYRCEVSTKDKFDCS-NFNLTVHEA 109

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 16/111 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P++      + +  G    L C +   P                   N +          
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGS---------- 52

Query: 63  PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
               R  V  +     L IEN+  + D G Y C  T+ +G S    + + V
Sbjct: 53  --ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 112 GAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESI-------TWQKGVQQLPLNRRQKVFP 163
           G P       +     GE   L C     P  +          +          R  V  
Sbjct: 1   GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 164 NG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
           +     L IEN+  + D G Y C  T+ +G S    + + V
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRV 100

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-07
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 3   PQLIYKFIQQ-TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P ++    +   +  G  + L C  TG  +    WK +G        E+   +GE     
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV----IDEDDPVLGEDYYSV 57

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
                +++      L I  ++    +  + C A N  G  ++ 
Sbjct: 58  ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 100

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 19/107 (17%)

Query: 114 PFVRPMGN-VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-------- 164
             V P    +    G  + L C V G   +   W+     +  +                
Sbjct: 3   VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN 62

Query: 165 -------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
                    L I  ++    +  + C A N  G  ++   +I +  P
Sbjct: 63  KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA---YIQLIYP 106

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP--------NGTLLIENVQK 174
           S  +     +   V G P  ++ W      L  ++              +G L ++N   
Sbjct: 12  SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71

Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
             + G Y   A N+ G+     +       P I
Sbjct: 72  M-NNGDYTLIAKNEYGKDEK-QISAHFMGWPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
             +     GNP P + W  +G  L   ++                        +G L ++
Sbjct: 19  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHV-----------TNHTEYHGCLQLD 67

Query: 80  NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
           N     + G Y   A N+ G+     +     G P
Sbjct: 68  NPTHM-NNGDYTLIAKNEYGKDEK-QISAHFMGWP 100

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ 173
           PF++   N +    + + L C                      R      N  L I+ ++
Sbjct: 6   PFLQVT-NTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIK 64

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
           ++     Y C  +N      S ++ + +   P
Sbjct: 65  REDAG-EYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (105), Expect = 3e-07
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 5/91 (5%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN--GTLLIENV 172
            +     +   AG    L     G P  + TW  G     L     V      T +    
Sbjct: 5   ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPS 64

Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
            K  D G Y     N+ G   +      V V
Sbjct: 65  AKRADSGNYKLKVKNELGEDEA---IFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 18/108 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P+++    +  ++ G   +L+    G P P  +W +     A       +          
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK-------- 54

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                     + T +     K  D G Y     N+ G   +    + V
Sbjct: 55  ---------SSTTSIFFPSAKRADSGNYKLKVKNELGEDEA-IFEVIV 92

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-07
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 115 FVRPMGNVSAIAGEPLYL-GCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ 173
           F     +++     P  L    V      +I W +G  ++          N       V 
Sbjct: 4   FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN-------VT 56

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISV 201
                 ++ C A N +G +SS+   + +
Sbjct: 57  GVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 27/109 (24%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
           P    +     + P  P  L C A        I W      + G                
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPS---------- 51

Query: 62  LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
                           + NV       ++ C A N +G +SS+   + +
Sbjct: 52  ----------------VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 121 NVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDH 176
            + + A E     CP+       +ITW K   + P++  Q          L     + + 
Sbjct: 11  ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVED 70

Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTV 203
               Y+C   N         + IS   
Sbjct: 71  SG-HYYCVVRNSSY---CLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 8/95 (8%), Positives = 15/95 (15%), Gaps = 19/95 (20%)

Query: 17  GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
                  C +        I+W  D                            +       
Sbjct: 17  NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE----------------QASRIHQHKEK 60

Query: 76  LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
           L     + +     Y+C   N         +    
Sbjct: 61  LWFVPAKVEDSG-HYYCVVRNSSY-CLRIKISAKF 93

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 8e-07
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 112 GAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLI 169
           G P     + N S   G+ + L C V G  +E   W    ++Q     +    P+  L +
Sbjct: 1   GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60

Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            NV  D +R    C A N  GR+   +V ++V+
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGRAEV-SVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 6e-05
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 19/109 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
           P L  +    ++  G  V L+C   G       W L     +    ++            
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG---------- 52

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
                    P+  L + NV  D +R    C A N  GR+   +V ++V+
Sbjct: 53  --------LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV-SVQVNVS 92

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 127 GEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
           GE + L C      P+  +T+ +  +    +R           I         G Y CT 
Sbjct: 15  GETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSD-----PNFSIPQANHS-HSGDYHCTG 68

Query: 186 TNKQGRSSSQNVHISVTVP 204
                  SS+ V I+V  P
Sbjct: 69  NIGYTLYSSKPVTITVQAP 87

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 6e-04
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 26/103 (25%)

Query: 11  QQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
               Q G  + L+C +  + P   +++  +G      R +    I +A            
Sbjct: 9   HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANH---------- 58

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
                             G Y CT        SS+ V I+V  
Sbjct: 59  ---------------SHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQK-------VFPNGTLLIENVQKDHDRGVYWCTAT 186
             V G P  ++ W    Q L  ++              G LL       ++ G Y   A 
Sbjct: 24  FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN-GNYTLIAK 82

Query: 187 NKQGRSSSQNVHISVTVPP 205
           N  G +++Q ++      P
Sbjct: 83  NPLG-TANQTINGHFLKEP 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
           +      ++ +  GNP P + W  +G PL   +  +                ++     G
Sbjct: 15  ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVE------------YYQEGEISEG 62

Query: 75  TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
            LL       ++ G Y   A N  G +++Q ++      PF
Sbjct: 63  CLLFNKPTHYNN-GNYTLIAKNPLG-TANQTINGHFLKEPF 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 4e-06
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQK-----------GVQQLPLNRRQKVFPNGT 166
              +V     E + L C  +G+    + W+              Q       +  F +  
Sbjct: 7   AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66

Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
           +   +V +  +   Y C  + + G  +   V I +TV
Sbjct: 67  ITFSSVTRKDNG-EYTCMVSEEGG-QNYGEVSIHLTV 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 6e-06
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 10/99 (10%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
            +     + L C  +G  +P + WK            N                 +  F 
Sbjct: 12  QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAP--------YADRVTFS 63

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
           +  +   +V +  +   Y C  + + G  +   V I +T
Sbjct: 64  SSGITFSSVTRKDNG-EYTCMVSEEGG-QNYGEVSIHLT 100

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 127 GEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
           G+PL+L C       +  + + K  +       +  + N  + I N     D G Y+CT 
Sbjct: 15  GQPLFLRCHGWRNWDVYKVIYYKDGEA-----LKYWYENHNISITNAT-VEDSGTYYCTG 68

Query: 186 TNKQGRSSSQNVHISVTVPPK 206
              Q    S+ ++I+V   P+
Sbjct: 69  KVWQLDYESEPLNITVIKAPR 89

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 6e-04
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
           + N  + I N     D G Y+CT    Q    S+ ++I+V  AP
Sbjct: 46  YENHNISITNAT-VEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 121 NVSAIAGEPLYLGCPVAG---YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
                 G+ L L C V G       ++   +G ++L            T  +   + DH 
Sbjct: 13  PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRR-DHH 71

Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
              + C             +  + + P ++
Sbjct: 72  GAQFSCRTELDLR-PQGLELFENTSAPYQL 100

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-06
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIEN 171
             +P+  V    GE  +    +   P     W+   Q L  +   ++        L++ N
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 172 VQKDHDRGVYWCTATNKQGR 191
            Q           A N +  
Sbjct: 63  CQLGMTG-EVSFQAANAKSA 81

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 9e-06
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
              V+     +  P   + WK     +A   +         + +            +G+L
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV------SGSL 62

Query: 77  LIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 108
            I N+    D   Y   + N    +    +++
Sbjct: 63  TIYNLTS-SDEDEYEMESPNITD-TMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-------------NGTL 167
            +  +    +    P    P++ + W+K   ++      +                +G+L
Sbjct: 4   QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199
            I N+    D   Y   + N    +    +++
Sbjct: 63  TIYNLTS-SDEDEYEMESPNITD-TMKFFLYV 92

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 9e-06
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAG---YPIESITWQKGVQQLPLNRRQKVFPNG----TLL 168
           +  +       G+   + C V         ++   +G + L      K  P         
Sbjct: 6   ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF 65

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
                ++     + C A      S   N+    + P  +
Sbjct: 66  NSTADREDGHRNFSCLAVLDLM-SRGGNIFHKHSAPKML 103

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 8/108 (7%), Positives = 19/108 (17%), Gaps = 18/108 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGDRHENKNRIGEARV 59
            Q+I       +  G   +++C         +  +        L  +             
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP---- 58

Query: 60  QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 107
                                  ++     + C A            H
Sbjct: 59  -----------QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 114 PF-VRPMGNVSAIAGEPLYL-GCPVAGYPIESITWQKGVQQLPLNRRQK---VFPNGTLL 168
            F       V    G  +     P   YP  S  W        +    +       G L 
Sbjct: 5   EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY 64

Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNV--HISVTVPP 205
           I   +   D G Y C AT+     +         +++  
Sbjct: 65  IAKTEA-SDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 102

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 18/93 (19%)

Query: 12  QTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +  G  V   C      P     W L+ +P        +                   
Sbjct: 14  VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT-------------- 59

Query: 71  FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
              G L I   +   D G Y C AT+     + 
Sbjct: 60  --TGNLYIAKTEA-SDLGNYSCFATSHIDFITK 89

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 4e-05
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 127 GEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
            +P++L C       +  +T+ +  +      R+    N    I       D G Y+C  
Sbjct: 17  EDPIHLRCHSWKNTALHKVTYLQNGKD-----RKYFHHNSDFHIPKATL-KDSGSYFCRG 70

Query: 186 TNKQGRSSSQNVHISVT 202
                  SS+ V+I++T
Sbjct: 71  LVGSKNVSSETVNITIT 87

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 26/104 (25%)

Query: 11  QQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           +   +   P+ L+C +  N     +++  +G       H +   I +A            
Sbjct: 11  RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKAT----------- 59

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
                           D G Y+C         SS+ V+I++T A
Sbjct: 60  --------------LKDSGSYFCRGLVGSKNVSSETVNITITQA 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-05
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 113 APFVRPM-GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
             F + +        G  + L   +A +  E    + G +      +      G   TL 
Sbjct: 6   TAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLT 65

Query: 169 IENVQKDHDRGVYWCTATNKQG 190
           I       D   Y C    ++ 
Sbjct: 66  ISQCSLA-DDAAYQCVVGGEKC 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 10/89 (11%), Positives = 20/89 (22%), Gaps = 17/89 (19%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
             +  G  + L           + W  +G  +     +                  + +
Sbjct: 15 AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIF---------------ESI 58

Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQG 99
              TL I       D   Y C    ++ 
Sbjct: 59 GAKRTLTISQCSLA-DDAAYQCVVGGEKC 86

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
             P     A  G+ + L C   G      +W+  +      +        TL +  V   
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTV 203
           ++   Y CTAT +  +       I V +
Sbjct: 65  NEH-SYLCTATCESRKLEK---GIQVEI 88

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 28/118 (23%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITW--------------------QKGVQQLPL 155
           + P   + A+ G+   L C ++     +                       Q   Q    
Sbjct: 6   IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 65

Query: 156 NRRQKVFP------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
             R ++           L I+NV+   D G Y C   +         V + V  P   
Sbjct: 66  RGRTELLKESIGEGKVALRIQNVRFS-DEGGYTCFFRDHSY-QEEAAVELKVEDPFYW 121

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 16/114 (14%)

Query: 13  TLQPGPPVSLKCIATGNPTP----------HISWKLDGYPLAGDRHENKNRIGEARVQQL 62
               G    L C  +                 S  +  Y    D+   +      R + L
Sbjct: 13  RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 72

Query: 63  PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV 116
             +  +       L I+NV+   D G Y C   +         V + V   PF 
Sbjct: 73  KESIGEG---KVALRIQNVRFS-DEGGYTCFFRDHSY-QEEAAVELKVE-DPFY 120

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 11  QQTLQPGPP-------VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
           + T++  PP       V L            +W                           
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 64  LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
            + R+ ++ NG+LL + +    D GVY    T++  R +   V   V
Sbjct: 61  YSGREIIYSNGSLLFQMITMK-DMGVYTLDMTDENYRRTQATVRFHV 106

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 20/99 (20%)

Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-------------------RRQKVF 162
                   + L        + +  W KG                           R+ ++
Sbjct: 9   PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68

Query: 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
            NG+LL + +    D GVY    T++  R +   V   V
Sbjct: 69  SNGSLLFQMITMK-DMGVYTLDMTDENYRRTQATVRFHV 106

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 7e-04
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVF------PNGTLLIENVQ 173
                 GE  +  C VA     + I+W     +     +Q++        + TL I N  
Sbjct: 9   QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 68

Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISV 201
            D    +Y C  T + G  S   V++ +
Sbjct: 69  IDDAG-IYKCVVTAEDGTQSEATVNVKI 95

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 11  QQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           Q  +  G      C          ISW            +  +                 
Sbjct: 9   QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV-------------VWN 55

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
              + TL I N   D    +Y C  T + G  S   V++ +
Sbjct: 56  DDDSSTLTIYNANIDDAG-IYKCVVTAEDGTQSEATVNVKI 95

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 20/100 (20%)

Query: 121 NVSAIAGEPLYLGCPV--------------AGYPIESITWQKGVQQLPLNRRQKVFP--- 163
           +V+    E   L C                       +T   G   +    + +      
Sbjct: 3   HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62

Query: 164 -NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
            N +++I  ++   D G Y C     +   + +  H++  
Sbjct: 63  NNLSIVILALRPS-DEGTYECVVLKYEK-DAFKREHLAEV 100

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 11/102 (10%), Positives = 28/102 (27%), Gaps = 3/102 (2%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
           I  T +     +L C    +       ++             +       +         
Sbjct: 2   IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI 61

Query: 70  VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
              N +++I  ++   D G Y C     +   + +  H++  
Sbjct: 62  T-NNLSIVILALRPS-DEGTYECVVLKYEK-DAFKREHLAEV 100

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
           G    L C             +       + +  +     LLI N+ +  D GVY C + 
Sbjct: 12  GGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEG-DSGVYQCLSE 70

Query: 187 NKQGRSSSQNVHISVTVPPKI 207
            +    +   V     +  K+
Sbjct: 71  ERVKNKTVFQVVAKHVLEVKV 91

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 14/104 (13%)

Query: 112 GAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP------- 163
           G+  V      V      P+ L C  +G+    + W+                       
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 164 ----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
                  +  ++V ++     Y C  + + G +S   V + + V
Sbjct: 63  VTFLPTGITFKSVTREDTG-TYTCMVSEEGG-NSYGEVKVKLIV 104

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
            +    PV L C  +G  +P + WK D          N                 +  F 
Sbjct: 15  RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS--------YEDRVTFL 66

Query: 73  NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
              +  ++V ++     Y C  + + G +S   V + + 
Sbjct: 67  PTGITFKSVTREDTG-TYTCMVSEEGG-NSYGEVKVKLI 103

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.001
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 9/91 (9%)

Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
           +    +   + G+ L L          S+  +    +     +        L        
Sbjct: 3   LTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLEL-------- 54

Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
            D G + CT    Q       + I V    K
Sbjct: 55  QDSGTWTCTVLQNQK-KVEFKIDIVVLAFQK 84

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSAM 250
             P++  F       S D+  + CL+    P  +++ WL N + +  A 
Sbjct: 3   AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR 51

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 22/108 (20%), Positives = 28/108 (25%), Gaps = 11/108 (10%)

Query: 8   KFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
           K  ++T   G P  L C+       P I+WK                   A V       
Sbjct: 8   KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSG----------ADPNADVTDFDRRI 57

Query: 67  RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
                 N    I   +   D   Y CTA N         V   + G  
Sbjct: 58  TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.78
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.75
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.74
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.73
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.73
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.7
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.7
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.67
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.67
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.66
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.65
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.65
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.65
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.65
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.65
d2avga1	110	Cardiac myosin binding protein C, different domain	99.65
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.64
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.61
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.61
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.61
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.6
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.6
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.6
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.6
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.59
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.59
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.56
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.56
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.56
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.55
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.54
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.54
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.54
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.54
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.54
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.54
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.53
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.53
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.53
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.52
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.52
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.51
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.51
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.51
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.51
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.51
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.5
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.5
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.48
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.47
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.47
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.47
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.47
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.46
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.43
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.4
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.4
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.4
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.4
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.39
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.39
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.37
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.36
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.36
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.35
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.35
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.34
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.34
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.34
d2avga1	110	Cardiac myosin binding protein C, different domain	99.34
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.33
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.33
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.33
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.33
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.32
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.32
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.32
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.31
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.31
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.29
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.29
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.29
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.27
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.26
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.23
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.2
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.19
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.18
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.17
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.17
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.17
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.1
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.09
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	99.06
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.06
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.05
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.04
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.03
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.02
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	99.01
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.01
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	99.0
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.99
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.99
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.99
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.99
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.98
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.98
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.98
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.97
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.97
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.97
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.97
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.97
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.96
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.96
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.93
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.93
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.91
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.91
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.9
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.9
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.88
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.88
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.86
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.86
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.86
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.86
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.84
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.84
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.84
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.83
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.83
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.83
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.82
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.81
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.8
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.79
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.79
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.78
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.78
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.78
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.77
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.77
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.77
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.76
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.76
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.76
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.76
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.75
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.75
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.75
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.75
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.74
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.74
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.72
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.71
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.71
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.7
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.7
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.7
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.69
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.69
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.68
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.66
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.66
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.66
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.66
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.66
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.65
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.65
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.64
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.63
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.63
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.61
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.59
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.58
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.56
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.55
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.55
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.53
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.52
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.51
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.51
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.5
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.5
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.5
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.48
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.48
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.48
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.48
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.48
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.48
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.46
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.46
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.45
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.44
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.43
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.43
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.43
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.42
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.42
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.42
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.42
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.41
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.4
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.4
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.38
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.38
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.37
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.37
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.36
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.36
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.36
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.35
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.35
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.35
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.35
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.35
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.34
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.33
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.33
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.33
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.32
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.32
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.32
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.31
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.31
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.31
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	98.3
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.29
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.29
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.28
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.28
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.28
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.26
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.26
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.26
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.26
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.25
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.25
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.25
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	98.24
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.24
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.24
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.24
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.23
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.23
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.22
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.22
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.21
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.21
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.21
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.2
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	98.19
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.19
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.18
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.18
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.18
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.17
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.17
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.16
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.16
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.14
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.14
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.14
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.13
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.12
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.12
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.12
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.12
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.12
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.12
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.11
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.11
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.11
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.11
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.11
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.1
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.1
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.1
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.09
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.09
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.09
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.08
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.07
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.07
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.07
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.07
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	98.07
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.07
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.06
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	98.05
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.05
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.05
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.04
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	98.03
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.03
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.03
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.03
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.03
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	98.02
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.02
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.0
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.98
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.98
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.97
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.96
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.96
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.96
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.95
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.95
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.95
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.94
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.94
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.93
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.93
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.92
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.91
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.91
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.91
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.91
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.9
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.9
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.89
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.89
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.89
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.88
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.88
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.85
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.84
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.83
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.83
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.83
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.83
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.82
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.82
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.82
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.82
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.8
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.8
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.78
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.77
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.76
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.75
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.74
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.73
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.71
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.71
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.7
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.69
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.68
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.68
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.68
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.67
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.67
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.66
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.66
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.66
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.64
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.61
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.59
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.59
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.57
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.56
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.55
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.55
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.55
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.52
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.5
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.5
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.5
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.49
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.49
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.49
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.47
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.46
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.45
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.45
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.45
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.44
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.44
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.44
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.43
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.42
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.42
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.42
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.42
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.4
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.39
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.38
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.37
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.37
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.36
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.36
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.36
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.34
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.34
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.33
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.31
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.29
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.29
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.28
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.27
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.27
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.27
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.27
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.26
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.26
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.25
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.25
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.24
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.23
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.23
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	97.22
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.2
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.17
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	97.17
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.17
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.16
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.13
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.11
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.11
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.11
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.1

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=6.5e-19  Score=106.87  Aligned_cols=88  Identities=28%  Similarity=0.598  Sum_probs=75.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .|.|...+.++.+.+|+++.|.|.+.|.|.+.+.|+|+|.++...   .++.+                 .+++|.|.++
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~---~~~~~-----------------~~~~L~i~~v   60 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---NRIEV-----------------SGGELRFSKL   60 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC---SSEEE-----------------ETTEEEESSC
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc---ceeee-----------------eeeeEEEEee
Confidence            488999999999999999999999999999999999999988654   22222                 3568999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       ..+|+|.|+|.+.|..|... ..+.|.|.
T Consensus        61 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~   88 (89)
T d1cs6a4          61 -VLEDSGMYQCVAENKHGTVY-ASAELTVQ   88 (89)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             -cccCCEEEEEEEEeCCCEEE-EEEEEEEE
Confidence             99999999999999998776 67778775

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.75  E-value=5.2e-18  Score=102.86  Aligned_cols=87  Identities=31%  Similarity=0.582  Sum_probs=70.8

Q ss_pred             CCCcceeece-eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          1 SHPQLIYKFI-QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         1 ~~p~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ++|.|...+. .+.+.+|+++.|.|.+.|.|.+.+.|++++..+...    +..                 ..+..|.|.
T Consensus         1 saP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~----~~~-----------------~~~~~L~i~   59 (89)
T d1biha4           1 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG----RAT-----------------VTDSGLVIK   59 (89)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS----SEE-----------------EETTEEEES
T ss_pred             CCCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc----cEE-----------------EeeeeEEEC
Confidence            4688877764 457899999999999999999999999999888543    111                 124579999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ++ ...|+|.|+|.+.|..|... ..+.|.|
T Consensus        60 ~v-~~~d~G~Y~C~a~N~~G~~~-~~~~l~V   88 (89)
T d1biha4          60 GV-KNGDKGYYGCRATNEHGDKY-FETLVQV   88 (89)
T ss_dssp             SC-CSTTCEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             CC-ChhhCEEEEEEEEECCCEEE-EEEEEEE
Confidence            99 99999999999999998776 6666665

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=3.6e-18  Score=105.55  Aligned_cols=94  Identities=24%  Similarity=0.332  Sum_probs=75.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .|+|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+...   .++.+..             .....+|.|.++
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~---~~~~~~~-------------~~~~~~L~I~~~   64 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS---VKYMKRY-------------NGNDYGLTINRV   64 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB---TTBBCCC-------------STTEEEEEESCC
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee---eEEEEEe-------------cCCeeEEEeCCC
Confidence            489999999999999999999999999999999999999988654   2222110             001236999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                       ...|+|.|+|.+.|..|... ..+.|.|...
T Consensus        65 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~   94 (97)
T d1koaa1          65 -KGDDKGEYTVRAKNSYGTKE-EIVFLNVTRH   94 (97)
T ss_dssp             -CSGGGSCEEEEEEETTEEEE-EEECCEEECS
T ss_pred             -ceecCEEEEEEEEECCCEEE-EEEEEEEeec
Confidence             99999999999999988776 6777777643

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=99.73  Aligned_cols=83  Identities=22%  Similarity=0.420  Sum_probs=69.1

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |.|..+|.+..+.+|+++.|.|.+.|.|.| .+.|+|+|..+...                         ..+.+.|...
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~-------------------------~~~~~~l~~~   56 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------------------------APSPSVLNVT   56 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS-------------------------EESSEEEEEC
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC-------------------------CCcceEEecC
Confidence            889999999999999999999999999887 89999999887654                         1234556666


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       ...|+|.|+|.+.|..|...+..+.|.|.
T Consensus        57 -~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          57 -GVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             -CCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             -CccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence             67899999999999999776677777763

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=9.6e-18  Score=103.80  Aligned_cols=94  Identities=19%  Similarity=0.295  Sum_probs=75.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+............               ....+|.|.++
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~---------------~~~~~L~I~~~   68 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE---------------DNVCELVIRDV   68 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEE---------------TTEEEEEECSC
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEecc---------------ceEEEEEeccC
Confidence            689999999999999999999999999999999999999988654211110000               01236999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                       ...|+|.|+|.+.|..|... ..+.|.|..
T Consensus        69 -~~~D~G~Y~c~a~N~~G~~~-~~~~L~V~~   97 (98)
T d1g1ca_          69 -TGEDSASIMVKAINIAGETS-SHAFLLVQA   97 (98)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             -ccccCEEEEEEEEECCcEEE-EEEEEEEEE
Confidence             99999999999999999876 777888764

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=104.11  Aligned_cols=95  Identities=21%  Similarity=0.260  Sum_probs=77.0

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |+|...+.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+...   .++.+..             .....+|.|.++ 
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~---~~~~~~~-------------~~~~~~L~I~~~-   63 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES---EHMKVEN-------------SENGSKLTILAA-   63 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS---SSEEEEE-------------CSSEEEEEETTC-
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC---CcEEEEE-------------ecceeEEEEeeC-
Confidence            67878889999999999999999999999999999999887654   2222210             011236999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      ...|+|.|+|.+.|..|... ..+.|.|...|.
T Consensus        64 ~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~P~   95 (101)
T d2cqva1          64 RQEHCGCYTLLVENKLGSRQ-AQVNLTVVDKPD   95 (101)
T ss_dssp             CTTTCEEEEEEEECSSCEEE-CCEEEEEECSCS
T ss_pred             CcccCEEEEEEEEECCCEEE-EEEEEEEEecCC
Confidence            99999999999999999877 888999987653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.73  E-value=4.4e-18  Score=104.27  Aligned_cols=91  Identities=16%  Similarity=0.262  Sum_probs=74.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|+|...+.++.+.+|+++.|.|.+.|.|.+.+.|++++..+.....   ..+.             ......+|.|.++
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~---~~~~-------------~~~~~~~L~I~~~   65 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE---LLVD-------------AKSSTTSIFFPSA   65 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTT---SEEE-------------EETTEEEEECTTB
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeee---eeec-------------ccccceeeccccc
Confidence            68998899999999999999999999999999999999887765421   1111             1112347999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       ..+|+|.|+|.+.|..|... ..+.|.|
T Consensus        66 -~~~D~G~Y~c~a~N~~G~~~-~~~~l~V   92 (93)
T d1wiua_          66 -KRADSGNYKLKVKNELGEDE-AIFEVIV   92 (93)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             -cccccEEEEEEEEECCCEEE-EEEEEEE
Confidence             99999999999999999877 7777776

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.73  E-value=1.4e-17  Score=103.81  Aligned_cols=93  Identities=23%  Similarity=0.409  Sum_probs=75.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+...   .++.+..            ......+|.|.++
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~---~~~~~~~------------~~~~~~~L~I~~~   72 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES---RHFQIDY------------DEEGNCSLTISEV   72 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS---SSEEEEE------------CTTCEEEEEESSC
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce---eeEeEEE------------ecCceeeeEecCC
Confidence            578888999999999999999999999999999999999988765   2222110            0011346999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       ...|+|.|+|.+.|..|... .++.|.|.
T Consensus        73 -~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~  100 (102)
T d1fhga_          73 -CGDDDAKYTCKAVNSLGEAT-CTAELLVE  100 (102)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             -CHHhCEEEEEEEEECCcEEE-EEEEEEEE
Confidence             99999999999999999776 77888775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=1.3e-17  Score=101.67  Aligned_cols=86  Identities=29%  Similarity=0.431  Sum_probs=69.2

Q ss_pred             CCccee-eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIY-KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|.. .+.++.+.+|++++|.|.+.|.|.+.+.|+|++......                      ....+++|.|.+
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----------------------~~~~~~~L~I~~   61 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----------------------WLSSEPLLHIQN   61 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----------------------CSBSSSEEEECS
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE----------------------eeeeeeEEEeCC
Confidence            577765 468899999999999999999999999999975432221                      112356899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      + ...|+|.|+|.+.|..|... ..+.|.|.
T Consensus        62 v-~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~   90 (91)
T d1cs6a3          62 V-DFEDEGTYECEAENIKGRDT-YQGRIIIH   90 (91)
T ss_dssp             C-CGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             C-CccCCEEEEEEEEECCCEEE-EEEEEEEE
Confidence            9 99999999999999998776 77777775

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5e-17  Score=100.94  Aligned_cols=95  Identities=31%  Similarity=0.564  Sum_probs=72.2

Q ss_pred             CCcceeec--eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKF--IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ||.|...+  .+..+.+|+++.|.|.+.|.|.+.+.|+++|..+...........              .....++|.|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~--------------~~~~~~~L~I~   68 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI--------------FSDDSSELTIR   68 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEE--------------ECTTSCEEEEC
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEE--------------eecCceEEEeC
Confidence            68886544  345678899999999999999999999999998765422111100              11124679999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      ++ ..+|+|.|+|.+.|..|... ..+.|.|..
T Consensus        69 ~v-~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~   99 (100)
T d1qz1a3          69 NV-DKNDEAEYVCIAENKAGEQD-ASIHLKVFA   99 (100)
T ss_dssp             SC-CGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             CC-CcccCEEEEEEEEECCCEEE-EEEEEEEEE
Confidence            99 99999999999999998776 778888864

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.70  E-value=2.3e-17  Score=101.30  Aligned_cols=90  Identities=27%  Similarity=0.404  Sum_probs=72.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      .|.|...|.++.+.+|+++.|.|.+.+.|.+ .+.|+++|..+.........                 ...+++|.|.+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-----------------~~~~~~L~i~~   64 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-----------------RKDEGSLVFLR   64 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-----------------CTTSCCEEESS
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-----------------cccceEEEEec
Confidence            6889899999999999999999999998766 79999999887554211111                 11356899999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      + ..+|+|.|+|.+.|..|...+..+.|+
T Consensus        65 v-~~~D~G~Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          65 P-QASDEGHYQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             C-CGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             c-ChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence            9 999999999999999987655666554

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.4e-17  Score=98.37  Aligned_cols=90  Identities=21%  Similarity=0.292  Sum_probs=70.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ++.|...|.++.+.+|+++.|.|.+.|.|.+.+.|++++..+........                 ....+++|.|.++
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~-----------------~~~~~~~L~I~~~   63 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF-----------------IVLSNNYLQIRGI   63 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTE-----------------EECTTSCEEETTC
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceee-----------------eeeeeeeEEECCC
Confidence            36677889999999999999999999999999999999987765422111                 1223568999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       +..|+|.|+|.+.|..+... ....+.|
T Consensus        64 -~~~D~G~Y~C~a~n~~~~~~-~~~~i~V   90 (92)
T d1epfa2          64 -KKTDEGTYRCEGRILARGEI-NFKDIQV   90 (92)
T ss_dssp             -CGGGCEEEEEEEEEGGGTEE-EEEEEEE
T ss_pred             -CHHhCEEEEEEEEECcCCEE-EEEEEEE
Confidence             99999999999999766544 4444444

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.70  E-value=9.4e-18  Score=102.30  Aligned_cols=90  Identities=20%  Similarity=0.428  Sum_probs=71.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +|+..|.++.+.+|+++.|.|.+.|.|.+.+.|++++..+....   +..+.             .....++|.|.++ .
T Consensus         1 rii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~---~~~~~-------------~~~~~~~L~i~~v-~   63 (91)
T d1tnna_           1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA---RHQVT-------------TTKYKSTFEISSV-Q   63 (91)
T ss_dssp             CCSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS---SCEEE-------------ECSSEEEEECSSC-C
T ss_pred             CEEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc---ceeee-------------eecceeEEeecCC-C
Confidence            35677889999999999999999999999999999998776542   11111             1112457999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      ..|+|.|+|.+.|..|... ..+.|.|.
T Consensus        64 ~~D~G~Y~C~a~N~~G~~~-~~~~l~V~   90 (91)
T d1tnna_          64 ASDEGNYSVVVENSEGKQE-AEFTLTIQ   90 (91)
T ss_dssp             SCCCEEEEEECBCSSCBCC-EEEEEECC
T ss_pred             HHHCEEEEEEEEECCCEEE-EEEEEEEE
Confidence            9999999999999988876 66777664

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=100.94  Aligned_cols=104  Identities=22%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CCCcceee-ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeecccc-ccceeeeeCCcEEE
Q psy14532          1 SHPQLIYK-FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPL-NRRQKVFPNGTLLI   78 (258)
Q Consensus         1 ~~p~~~~~-~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i   78 (258)
                      .+|.|... |.++.+.+|+++.|.|.+.+.|.+.|.|+|++.............    ....... .........+.|.|
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i   78 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP----YLKVLKAAGVNTTDKEIEVLYI   78 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-----------------CEEEECCEEEEETTEEEEEEEE
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCce----eEeecccceeEEecCCcEEEEE
Confidence            36777654 688999999999999999999999999999765432210000000    0000000 00011122457999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .++ ...|+|.|+|.|.|..|... ..+.|.|
T Consensus        79 ~~~-~~~D~G~Y~C~a~N~~G~~~-~~~~L~V  108 (109)
T d2fdbp2          79 RNV-TFEDAGEYTCLAGNSIGISF-HSAWLTV  108 (109)
T ss_dssp             CSC-CGGGCEEEEEEEECSSCEEE-EEEEEEE
T ss_pred             CCC-CHHHCeEEEEEEEECCCEEE-EEEEEEE
Confidence            999 99999999999999999877 7777776

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.7e-16  Score=95.43  Aligned_cols=86  Identities=24%  Similarity=0.354  Sum_probs=67.8

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      ||.+. ..+.+..+.+|+++.|.|.+. +.|.+.+.|+|++..+...                     .....+++|.|.
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---------------------~~~~~~~~L~i~   59 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---------------------RAMDFNGILTIR   59 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---------------------TEEEETTEEEEC
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---------------------ccEeeceEEEEe
Confidence            45554 456788899999999999997 4678899999987655433                     112246789999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      ++ ...|+|.|+|.+.|..|... ..+.|.|
T Consensus        60 ~v-~~~d~G~Y~C~a~N~~G~~~-~~~~l~V   88 (89)
T d1gl4b_          60 NV-QPSDAGTYVCTGSNMFAMDQ-GTATLHV   88 (89)
T ss_dssp             SC-CGGGCEEEEEEEECSSCEEE-EEEEEEE
T ss_pred             cC-CcccCEEEEEEEEECCCEEE-EEEEEEE
Confidence            99 99999999999999998766 6777776

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=5.2e-16  Score=95.56  Aligned_cols=91  Identities=19%  Similarity=0.325  Sum_probs=69.6

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      ...+.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+....... ....             ......+|.|.++ +.+
T Consensus         7 ~~~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~-~~~~-------------~~~~~~~L~I~~~-~~~   71 (97)
T d1biha3           7 QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDR-ITRH-------------NRTSGKRLLFKTT-LPE   71 (97)
T ss_dssp             EEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSS-EESC-------------SSSTTSEEEESSC-CGG
T ss_pred             eeCCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceee-eeee-------------eecCCCEEEEEec-ccc
Confidence            344578899999999999999999999999999999886542111 1110             0112457999999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |+|.|+|.+.|..|...+..+.|.|.
T Consensus        72 D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          72 DEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             GCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             ccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            99999999999998766567777763

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-16  Score=95.67  Aligned_cols=89  Identities=28%  Similarity=0.469  Sum_probs=69.0

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .|.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+....   ...+..           ........|.|.++ +.+|+
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~---~~~~~~-----------~~~~~~~~L~I~~~-~~~D~   66 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD---QLYIPV-----------SEQHWIGFLSLKSV-ERSDA   66 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSE---EEEEEE-----------ETTEEEEEEEESSC-CGGGC
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccce---eeeeee-----------cccCceeeEEECCC-CcccC
Confidence            4678899999999999999999999999999999876542   111110           00112346899999 99999


Q ss_pred             eEEEEEEEeCCcceeeceEEEEEe
Q psy14532         88 GVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        88 G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |.|+|.+.|..|...+..+.|.|.
T Consensus        67 G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          67 GRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EEEEEEESSCTTCEECCCEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEE
Confidence            999999999988766577888775

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-16  Score=95.24  Aligned_cols=85  Identities=15%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             cceeeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      ++...+....+.+|+++.|.|.+. +.|.+.|.|++.+.++...                     ......+.|.|.++ 
T Consensus         5 ~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~---------------------~~~~~~~~L~i~~v-   62 (90)
T d1gsma1           5 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV---------------------QSDTGRSVLTVRNA-   62 (90)
T ss_dssp             EEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE---------------------EEESSEEEEEECSC-
T ss_pred             EEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee---------------------eccCceeeEEcCcc-
Confidence            344444557788999999999885 6788899999876544211                     01112457999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +.+|+|.|+|.+.+..+... .++.|.|+
T Consensus        63 ~~~D~G~Y~C~Asn~~g~~~-~s~~l~Vy   90 (90)
T d1gsma1          63 SLSAAGTRVCVGSCGGRTFQ-HTVQLLVY   90 (90)
T ss_dssp             CGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             ChhhCCcEEEEEEeCCCcEE-EEEEEEEC
Confidence            99999999999999988766 78888774

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.65  E-value=3.2e-16  Score=94.42  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=65.6

Q ss_pred             eeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      +..+....+.+|++++|.|.+.+ .|.+.+.|||+++.+...                        ..++.|.|.++ ..
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~------------------------~~~~~l~i~~v-~~   58 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS------------------------RSDPNFSIPQA-NH   58 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------------------SSCCEEEETTC-CG
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc------------------------ccccccccCcc-CH
Confidence            34445567899999999999865 466789999998865432                        12457999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      +|+|.|+|.+.+..+...+..+.|.|..|
T Consensus        59 ~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          59 SHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             HHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            99999999999988766667888888765

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=3.8e-16  Score=96.19  Aligned_cols=83  Identities=24%  Similarity=0.490  Sum_probs=65.8

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      ...+.+|+++.|.|.+.|.|.+.+.|+|+|..+..........               .....++|.|.++ ...|+|.|
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~---------------~~~~~~~L~I~~v-~~~D~G~Y   77 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK---------------VRNQHWSLIMESV-VPSDKGNY   77 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCE---------------EEGGGTEEEECSC-CGGGCEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEE---------------EcCCcEEEEECCC-CcccCEEE
Confidence            3567899999999999999999999999999886542211111               1123468999999 99999999


Q ss_pred             EEEEEeCCcceeeceEEEEE
Q psy14532         91 WCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        91 ~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|.+.|..|... ..+.|.|
T Consensus        78 ~C~a~N~~G~~~-~~~~l~V   96 (97)
T d3dara1          78 TCVVENEYGSIN-HTYHLDV   96 (97)
T ss_dssp             EEEEEETTEEEE-EEEEEEE
T ss_pred             EEEEEECCCEEE-EEEEEEE
Confidence            999999998766 7777776

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.2e-16  Score=93.07  Aligned_cols=84  Identities=26%  Similarity=0.359  Sum_probs=67.5

Q ss_pred             eeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      +..+....+.+|++++|.|.+.+. +...+.|||+|..+....                        ....|.|.++ +.
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~------------------------~~~~l~i~~~-~~   58 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------------------------ENHNISITNA-TV   58 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC------------------------CSSEEEESSC-CG
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc------------------------ccceEEEeee-ee
Confidence            344556778999999999999765 455899999998775431                        2457899999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      +|+|.|+|.+.+..+...+..+.|.|..+|
T Consensus        59 ~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          59 EDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             ecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            999999999999877666688899998765

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=94.26  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      .+..+.+|++++|.|.+.+.|.|.+.|++++..+.                          ..+.+|.|.++ ..+|+|.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------------------------~~~~~l~i~~v-~~~DsG~   59 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------------------------QGGKTLSVSQL-ELQDSGT   59 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------------------------EESSEEEESSC-CGGGCEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeecccce--------------------------eeeeeeeeeec-ccccccE
Confidence            35678999999999999999999999998754321                          23567999999 9999999


Q ss_pred             EEEEEEeCCcceeeceEEEEEecCC
Q psy14532         90 YWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        90 Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      |+|.+.|..|... ..+.|.|...|
T Consensus        60 Y~C~a~N~~g~~~-~~~~v~V~~~~   83 (84)
T d2nxyb2          60 WTCTVLQNQKKVE-FKIDIVVLAFQ   83 (84)
T ss_dssp             EEEEEEETTEEEE-EEEEECEECCC
T ss_pred             EEEEEEeCCCEEE-EEEEEEEEecC
Confidence            9999999988777 77888887654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4.7e-16  Score=95.64  Aligned_cols=91  Identities=22%  Similarity=0.418  Sum_probs=70.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|  .+.+..+.+|++++|.|.+.+ +.+.+.|++++..+...   .+..+.               ...++|.|.++
T Consensus         5 ~P~i--~~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~---~~~~~~---------------~~~~~L~I~~v   63 (96)
T d1l6za2           5 QPFL--QVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT---ERMTLS---------------QNNSILRIDPI   63 (96)
T ss_dssp             CCCE--ECSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCC---TTEEEE---------------TTTTEEEECSC
T ss_pred             CCeE--EcCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccc---cceecc---------------CCceEEEEecc
Confidence            4544  456788999999999998866 45799999999988654   222111               23567999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                       +.+|.|.|+|.|.|..+...+..+.|.|..+|
T Consensus        64 -~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          64 -KREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             -CGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             -chhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence             99999999999999988776678899997765

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.8e-16  Score=97.48  Aligned_cols=102  Identities=14%  Similarity=0.219  Sum_probs=73.3

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecC---CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      |.|...|.++.+.+|++++|.|.+.+.|   .+.|.|+|++..........+.......       ........++|.|.
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~I~   77 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY-------DRASKVYLFELHIT   77 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEE-------ETTTTEEEEEEEEE
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeee-------EEecccCEEEEEEe
Confidence            4678889999999999999999999887   5689999987543322111221111000       00011123579999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      ++ +..|+|.|+|.+.|..|... ..+.|.|...
T Consensus        78 ~v-~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~~~  109 (110)
T d2avga1          78 DA-QPAFTGGYRCEVSTKDKFDC-SNFNLTVHEA  109 (110)
T ss_dssp             SC-CTTCCEEEEEEEEETTEEEE-EEEEEEEESC
T ss_pred             cc-CHHHCcEEEEEEEECCCeEE-EEEEEEEEec
Confidence            99 99999999999999999887 8888888753

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.64  E-value=8.1e-16  Score=92.79  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=65.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      ++..+....+.+|++++|.|.+.+ .|.+.+.|||+|..+...                        ..+..|.|.++ +
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------------------------~~~~~l~I~~v-~   59 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------------------------HHNSDFHIPKA-T   59 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------------------------EECCCEEESSC-C
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------------------------ccccccEECcc-c
Confidence            344556677899999999999864 466689999998765432                        13557999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                      .+|+|.|+|.+.+..+...+..+.|.|..
T Consensus        60 ~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          60 LKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            99999999999998877666778888764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=2.8e-16  Score=96.90  Aligned_cols=90  Identities=26%  Similarity=0.457  Sum_probs=68.8

Q ss_pred             CCcceeeceeeeecCC---CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.|...|.++.+.+|   ++++|.|.+.|.|.+.+.|++++..+....... .                .......|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~-~----------------~~~~~~~l~i   66 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSR-Y----------------RLVAGDLVIS   66 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSS-E----------------EEETTEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCce-E----------------EeeeeeEEEE
Confidence            5888888988887766   789999999999999999999999886542111 1                1112334667


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      ..+ ...|+|.|+|.+.|..|...+..+.|+
T Consensus        67 ~~~-~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          67 NPV-KAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             SCC-HHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ecc-cccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            778 889999999999999997755666654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=4.9e-16  Score=93.92  Aligned_cols=85  Identities=26%  Similarity=0.488  Sum_probs=71.1

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      ++..+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+ .++.|.|.++.. +|.|.|+|.|.|..|. ..
T Consensus         4 f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~-~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~   80 (89)
T d1cs6a4           4 WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVL-EDSGMYQCVAENKHGT-VY   80 (89)
T ss_dssp             EEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCG-GGCEEEEEEEEETTEE-EE
T ss_pred             eEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee-eeeeEEEEeecc-cCCEEEEEEEEeCCCE-EE
Confidence            34456677889999999999999999999999999998887776655 467899999997 9999999999999884 44


Q ss_pred             ceEEEEee
Q psy14532        195 QNVHISVT  202 (258)
Q Consensus       195 ~~~~l~v~  202 (258)
                      ....|.|.
T Consensus        81 ~~~~l~V~   88 (89)
T d1cs6a4          81 ASAELTVQ   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56677664

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.7e-15  Score=93.06  Aligned_cols=88  Identities=25%  Similarity=0.257  Sum_probs=73.3

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+...   .+|.|.++.. +|+|.|+|.|.|..|. .
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~   82 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVENKLGS-R   82 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEECSSCE-E
T ss_pred             eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCc-ccCEEEEEEEEECCCE-E
Confidence            345667889999999999999999999999999999887776655332   2589999997 9999999999999884 5


Q ss_pred             cceEEEEeecCCc
Q psy14532        194 SQNVHISVTVPPK  206 (258)
Q Consensus       194 ~~~~~l~v~~~p~  206 (258)
                      +..+.|.|...|.
T Consensus        83 ~~~~~l~V~~~P~   95 (101)
T d2cqva1          83 QAQVNLTVVDKPD   95 (101)
T ss_dssp             ECCEEEEEECSCS
T ss_pred             EEEEEEEEEecCC
Confidence            6778888887765

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.1e-15  Score=92.84  Aligned_cols=93  Identities=24%  Similarity=0.334  Sum_probs=68.0

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCC-CeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ++...|.+..+.+|+++.|.|.+.+.|. +.+.|+++ +..+....  .++.+.            .......+|.|.++
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~--~~~~~~------------~~~~~~~~L~I~~~   67 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ--QRISVV------------WNDDDSSTLTIYNA   67 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS--SSEEEE------------EEETTEEEEEECSC
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeecc--ccEEEE------------eecCcceEEEcccC
Confidence            4567788889999999999999998874 69999984 55443321  111110            01112357999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                       +.+|+|.|+|.+.|..|......+.|.|+
T Consensus        68 -~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          68 -NIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             -CGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             -chhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence             99999999999999988766577888775

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-16  Score=97.35  Aligned_cols=89  Identities=22%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      .|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.....   .               .......+|.|.++
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~---~---------------~~~~~~~~L~i~~~   63 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM---K---------------SGGLPSLGLTLANV   63 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC---C---------------CCCSSEEEEEEESC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee---e---------------eeeccceeEEEccc
Confidence            68999999999999999999999999999999999999866543210   0               01123457999999


Q ss_pred             ccCCCce-EEEEEEEeCCcceeeceEEEEE
Q psy14532         82 QKDHDRG-VYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                       ..+|.| .|+|.+.|..|... ..+.|.|
T Consensus        64 -~~~d~G~~Y~C~a~N~~G~~~-~s~~l~V   91 (92)
T d2ifga1          64 -TSDLNRKNVTCWAENDVGRAE-VSVQVNV   91 (92)
T ss_dssp             -CSTTTTCCEEECCEETTEECC-EEECCCC
T ss_pred             -cccccceEEEEEEEcCCCEEE-EEEEEEE
Confidence             899998 79999999998776 5555543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=96.65  Aligned_cols=102  Identities=19%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecC---CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |+..|.++.+.+|++++|.|.+.+.|   .|.|.|+|++...........+.....      +. ........+|.|.++
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~L~I~~v   75 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET------FE-RHSRVYTFEMQIIKA   75 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEE------EE-TTTTEEEEEEEECSC
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccc------ee-eEeecCEEEEEEccC
Confidence            56778899999999999999999987   579999998643221111111111100      00 000112346999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|..++.
T Consensus        76 -~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~~~~~  107 (113)
T d2dava1          76 -KDNFAGNYRCEVTYKDKFDS-CSFDLEVHESTG  107 (113)
T ss_dssp             -CTTSCEEEEEEEECSSCEEE-ECCEEEEECCCC
T ss_pred             -CHHHCeEEEEEEEeCCCEEE-EEEEEEEEcCCC
Confidence             99999999999999999876 788899876643

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=95.15  Aligned_cols=98  Identities=21%  Similarity=0.302  Sum_probs=69.8

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      |.++..+....+.+|+++.|.|.+.+.| .|.+.|+|++..+.............           ........|.|.++
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~I~~v   72 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-----------EKNISFFILHFEPV   72 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEE-----------CSSCEEEEEEESSC
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEe-----------cCCceEEEEEEccc
Confidence            4556788889999999999999999987 58999999876543221111111000           00001235899999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTG  112 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~  112 (258)
                       ..+|+|.|+|.|.|..|...+..+.|.|..
T Consensus        73 -~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          73 -LPNDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             -CGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -cHHHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence             999999999999999987665777887764

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.4e-16  Score=93.34  Aligned_cols=79  Identities=22%  Similarity=0.288  Sum_probs=63.0

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      .+|.+...+..+.+.+|++++|.|.+.+.+. +.|.|+|++..+...   .+                .....+++|.|.
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~---~~----------------~~~~~~~~L~I~   65 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH---PS----------------RWAGMGRRLLLR   65 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC---CE----------------EEEEESSEEEEC
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce---ee----------------EEecCCCEEEEC
Confidence            3688888889999999999999999988654 589999998776543   11                122346789999


Q ss_pred             ecccCCCceEEEEEEEeCCc
Q psy14532         80 NVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ++ +.+|+|.|+|.+.+...
T Consensus        66 ~v-~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          66 SV-QLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             SC-CGGGCEEEEEESSSSCS
T ss_pred             CC-ChhcCEEEEEEECCccc
Confidence            99 99999999999876543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.8e-15  Score=90.30  Aligned_cols=86  Identities=22%  Similarity=0.307  Sum_probs=65.1

Q ss_pred             ceeece-eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          5 LIYKFI-QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         5 ~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      |...|. ...+.+|+++.|.|.+.+.|.+.+.|++++..+....   ..                .....++|.|.++ +
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~----------------~~~~~~~L~I~~v-~   62 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VT----------------NEGTTSTLTMNPV-S   62 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EE----------------EETTEEEEEESSC-C
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---ee----------------eecCCcEEEEecc-c
Confidence            333443 4556799999999999999999999999765443220   00                1112457999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .+|+|.|+|.+.|..|... ..+.|.|+
T Consensus        63 ~~d~G~Y~C~a~N~~g~~~-~~~~v~V~   89 (90)
T d1vcaa2          63 FGNEHSYLCTATCESRKLE-KGIQVEIY   89 (90)
T ss_dssp             GGGCSEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             ccccceEEEEEEeCCCEEE-EEEEEEEE
Confidence            9999999999999998776 78888875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-16  Score=94.36  Aligned_cols=81  Identities=25%  Similarity=0.240  Sum_probs=64.3

Q ss_pred             CCcce--eeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLI--YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~--~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|+|.  ..+.++.+.+|+.+.|.|.+.|.|.+.+.|+|++..+...                             +.+.
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-----------------------------~~~~   52 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-----------------------------GESV   52 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-----------------------------TSCE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-----------------------------eeee
Confidence            36663  3467788999999999999999999999999987654322                             2244


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      ++ +..|+|.|.|.+.|..|... ..+.|.|..+
T Consensus        53 ~v-~~~d~G~Y~C~A~N~~G~~~-~~~~l~V~~P   84 (84)
T d2oz4a3          53 TV-TRDLEGTYLCRARSTQGEVT-REVTVNVLSP   84 (84)
T ss_dssp             EC-CGGGCEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred             cc-ccCCCCEEEEEEEcCCCEEE-EEEEEEEECC
Confidence            66 78899999999999998776 7888888653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-15  Score=97.83  Aligned_cols=108  Identities=18%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             CCcce-----eeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceee----------cccccc
Q psy14532          2 HPQLI-----YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ----------QLPLNR   66 (258)
Q Consensus         2 ~p~~~-----~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~   66 (258)
                      ||+|.     ..+..+.+.+|++++|.|.+.|.|.+.+.|++++..+.................          ......
T Consensus         4 PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (130)
T d1gxea_           4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG   83 (130)
T ss_dssp             CCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSS
T ss_pred             CCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCc
Confidence            77763     456788899999999999999999999999998766544321111110000000          000011


Q ss_pred             cee---eeeCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         67 RQK---VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        67 ~~~---~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +..   .....+|.|.++ +.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus        84 r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~  129 (130)
T d1gxea_          84 RVRVETTKDRSIFTVEGA-EKEDEGVYTVTVKNPVGEDQ-VNLTVKVI  129 (130)
T ss_dssp             SCEEEEETTEEEEECSCC-CTTTCEEEEEEEECSSCEEE-EEEEEEEC
T ss_pred             eEEEEECCCEEEEEECcC-ChhcCEEEEEEEEECCCEEE-EEEEEEEE
Confidence            111   112246999999 99999999999999999876 78888775

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.9e-15  Score=91.03  Aligned_cols=95  Identities=19%  Similarity=0.297  Sum_probs=68.7

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCc---cccceecccceeeccccccceeeeeCCcE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDR---HENKNRIGEARVQQLPLNRRQKVFPNGTL   76 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   76 (258)
                      .||+|...+.+..+.+|+.+.|.|.+.+.|.+ .+.|++++.......   ...++.+.             ......+|
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~L   67 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS-------------SSQGRSEL   67 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEE-------------EETTEEEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEE-------------eCCCEEEE
Confidence            48999999999999999999999999998877 799999653221110   00111110             00112368


Q ss_pred             EEeeccc-CCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         77 LIENVQK-DHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        77 ~i~~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .|.++ . ..|+|.|+|.|.|..|... ..+.|.|
T Consensus        68 ~I~~v-~~~~D~G~Y~C~A~N~~G~~~-~~~~L~V  100 (101)
T d3b5ha1          68 HIENL-NMEADPGQYRCNGTSSKGSDQ-AIITLRV  100 (101)
T ss_dssp             EECSC-CTTTSSEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             EEecc-ccccCCEEEEEEEEECCCEEE-EEEEEEE
Confidence            89999 6 5799999999999998776 7777776

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=7.4e-15  Score=92.68  Aligned_cols=103  Identities=21%  Similarity=0.358  Sum_probs=70.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.+........+.+|+++.|.|.+. +.|.+.+.|++++..+............        ..........+.|.|.+
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~I~~   73 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM--------NSSFTIDPKSGDLIFDP   73 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCS--------SSCEEECTTTCCEEESS
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeec--------CceEEEeecccceEECC
Confidence            56664444456788999999999985 6889999999999877544211111110        00111122345799999


Q ss_pred             cccCCCceEEEEEEEeCCccee-eceEEEEEecC
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSS-SQNVHISVTGA  113 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~  113 (258)
                      + +..|+|.|+|.+.|..|... +..+.|.|...
T Consensus        74 v-~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          74 V-TAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             C-CGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             C-CccCCEEEEEEEEECCCcEEEEEEEEEEEEec
Confidence            9 99999999999999988654 36777777654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=2.4e-15  Score=92.61  Aligned_cols=88  Identities=25%  Similarity=0.320  Sum_probs=69.6

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ++..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+   .|.|.++.. +|+|.|+|.|.|..|.
T Consensus         4 f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~   82 (97)
T d1koaa1           4 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG-DDKGEYTVRAKNSYGT   82 (97)
T ss_dssp             EEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCS-GGGSCEEEEEEETTEE
T ss_pred             EEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCce-ecCEEEEEEEEECCCE
Confidence            334456678899999999999999999999999999988776665543333   589999987 9999999999999874


Q ss_pred             CccceEEEEeecC
Q psy14532        192 SSSQNVHISVTVP  204 (258)
Q Consensus       192 ~~~~~~~l~v~~~  204 (258)
                       .+..+.|.|...
T Consensus        83 -~~~~~~l~V~~~   94 (97)
T d1koaa1          83 -KEEIVFLNVTRH   94 (97)
T ss_dssp             -EEEEECCEEECS
T ss_pred             -EEEEEEEEEeec
Confidence             445566666543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.3e-15  Score=89.30  Aligned_cols=80  Identities=18%  Similarity=0.303  Sum_probs=64.9

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      ...+..|+.+.|.|.+.|.|.+.+.|++++..+...........+.|.|.++.. +|+|.|+|.|.|..+ ..+..+.|.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~g-~~~~~~~v~   87 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF-GNEHSYLCTATCESR-KLEKGIQVE   87 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCG-GGCSEEEEEEEETTE-EEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccc-cccceEEEEEEeCCC-EEEEEEEEE
Confidence            345678999999999999999999999987766554444444556799999997 999999999999988 456677777


Q ss_pred             ee
Q psy14532        201 VT  202 (258)
Q Consensus       201 v~  202 (258)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.9e-15  Score=91.70  Aligned_cols=105  Identities=15%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      +...+.+..+.+|++|.|.|.........+.|+|+........................+.+|..+..+++|.|.++ +.
T Consensus         2 vti~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v-~~   80 (107)
T d1l6za1           2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI-TM   80 (107)
T ss_dssp             CEEEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSC-CG
T ss_pred             cEEEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCC-Cc
Confidence            34455556788999999999854444568999996533221111111112222333455678888889999999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      +|+|.|+|.+.+..+......+.|.|
T Consensus        81 ~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          81 KDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             GGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             hhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            99999999998877655446666665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.3e-14  Score=89.01  Aligned_cols=84  Identities=23%  Similarity=0.387  Sum_probs=70.4

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec-CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      ....+.+|+.+.|.|.+.+ +.+.+.|++++..+....+..+.. .++|.|.++.. +|.|.|+|.|.|..+...+..+.
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~S~~~~   88 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR-EDAGEYQCEISNPVSVRRSNSIK   88 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCG-GGCEEEEEEEESSSCCEECCCCE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccch-hhceEEEEEEEeCCCCeEEEeEE
Confidence            4456889999999999876 567999999999888776666544 45799999997 99999999999998866677889


Q ss_pred             EEeecCC
Q psy14532        199 ISVTVPP  205 (258)
Q Consensus       199 l~v~~~p  205 (258)
                      |.|.++|
T Consensus        89 L~V~~~P   95 (96)
T d1l6za2          89 LDIIFDP   95 (96)
T ss_dssp             EEECCSC
T ss_pred             EEEEcCC
Confidence            9998877

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=3.8e-15  Score=90.50  Aligned_cols=84  Identities=24%  Similarity=0.448  Sum_probs=67.7

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ..+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+.   ..+.|.|.++.. +|+|.|+|.|.|..|. .
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~   81 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVENSEGK-Q   81 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCS-CCCEEEEEECBCSSCB-C
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCH-HHCEEEEEEEEECCCE-E
Confidence            3456678899999999999999999999999999988776654443   234699999987 9999999999999885 4


Q ss_pred             cceEEEEee
Q psy14532        194 SQNVHISVT  202 (258)
Q Consensus       194 ~~~~~l~v~  202 (258)
                      +..+.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            455666653

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=8.3e-15  Score=90.29  Aligned_cols=87  Identities=18%  Similarity=0.260  Sum_probs=69.0

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--cCC--eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PNG--TLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ++..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....  .++  .|.|.++.. +|.|.|+|.+.|..|
T Consensus         7 f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G   85 (98)
T d1g1ca_           7 IFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAINIAG   85 (98)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTE
T ss_pred             EecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCcc-ccCEEEEEEEEECCc
Confidence            344456778899999999999999999999999999988766554332  222  689999997 999999999999988


Q ss_pred             CCccceEEEEeec
Q psy14532        191 RSSSQNVHISVTV  203 (258)
Q Consensus       191 ~~~~~~~~l~v~~  203 (258)
                      . .+....|.|..
T Consensus        86 ~-~~~~~~L~V~~   97 (98)
T d1g1ca_          86 E-TSSHAFLLVQA   97 (98)
T ss_dssp             E-EEEEEEEEEEC
T ss_pred             E-EEEEEEEEEEE
Confidence            4 45566676653

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.55  E-value=1.2e-14  Score=86.88  Aligned_cols=78  Identities=22%  Similarity=0.322  Sum_probs=61.8

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      .|...|....+.+|++|+|.|.+.+.+.+ .+.|+++|..+...                          +..|.|.++ 
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~--------------------------~~~l~i~~v-   58 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH--------------------------TQPSYRFKA-   58 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC--------------------------CSSEEEEEC-
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc--------------------------ccceEEeec-
Confidence            45677778889999999999999887655 68899999877543                          457999999 


Q ss_pred             cCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         83 KDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +.+|+|.|+|.+.+...   +..+.|.|.
T Consensus        59 ~~~dsG~Y~C~a~ns~~---S~~v~l~V~   84 (85)
T d2fcba1          59 NNNDSGEYTCQTGQTSL---SDPVHLTVL   84 (85)
T ss_dssp             CGGGCEEEEEECTTSBC---CCCEEEEEE
T ss_pred             cccCCcEEEEECCCCcc---cccEEEEEE
Confidence            99999999999876533   245666664

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=8.9e-15  Score=90.94  Aligned_cols=100  Identities=18%  Similarity=0.353  Sum_probs=67.8

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...+.++.+.+|++++|.|.+.+.|.+.+.|++.+..........       ......+..+ ....+++|.|.++
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~tL~I~~v   72 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYN-------SQITAPYADR-VTFSSSGITFSSV   72 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEET-------TEECGGGTTT-EEEETTEEEESCC
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccc-------cccccceeeE-EEecCCEEEEeEC
Confidence            3667777788899999999999999999999999998543221110000       0011112222 2234678999999


Q ss_pred             ccCCCceEEEEEEEeCCccee-eceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQGRSS-SQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v  110 (258)
                       +.+|+|.|+|.+.+..|... ...+.|.|
T Consensus        73 -~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          73 -TRKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             -CGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             -CccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence             99999999999999888765 23344443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.3e-15  Score=90.50  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEee--CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      .|.|. .+.++.+.+|+++.|.|.+.+.|.+.+.|.+  .+.......  ....+.             .....++|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~L~I~   65 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK--EIKVTS-------------SRRFIASFNVV   65 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEE--EEEEEE-------------TTEEEEEEEEC
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCC--ceeEEE-------------eecCceEEEEC
Confidence            68886 5899999999999999999998877655432  222211110  000000             00123579999


Q ss_pred             ecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      ++ ..+|+|.|+|.+.|..|...+..+.|.|.
T Consensus        66 ~v-~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          66 NT-TKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             SC-CGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CC-CHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            99 99999999999999999876566777763

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.54  E-value=1.3e-14  Score=90.12  Aligned_cols=84  Identities=23%  Similarity=0.418  Sum_probs=68.8

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec--C--CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP--N--GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+..  .  .+|.|.++.. +|.|.|+|.|.|..|. 
T Consensus        13 ~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-   90 (102)
T d1fhga_          13 KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVNSLGE-   90 (102)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEETTEE-
T ss_pred             cCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCH-HhCEEEEEEEEECCcE-
Confidence            34566788999999999999999999999999999988776665532  2  3689999997 9999999999999884 


Q ss_pred             ccceEEEEee
Q psy14532        193 SSQNVHISVT  202 (258)
Q Consensus       193 ~~~~~~l~v~  202 (258)
                      .+..+.|.|.
T Consensus        91 ~~~~~~L~V~  100 (102)
T d1fhga_          91 ATCTAELLVE  100 (102)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4566666664

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=88.99  Aligned_cols=82  Identities=26%  Similarity=0.479  Sum_probs=66.4

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--cC---CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PN---GTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.  ..   ..|.|.++.. +|+|.|+|.|.|..+...+
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCG-GGCEEEEEEESSCTTCEEC
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCc-ccCEEEEEEEEECCCCEEE
Confidence            4567889999999999999999999999999988765543332  22   3588999987 9999999999999886567


Q ss_pred             ceEEEEee
Q psy14532        195 QNVHISVT  202 (258)
Q Consensus       195 ~~~~l~v~  202 (258)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            77777764

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-14  Score=86.16  Aligned_cols=78  Identities=18%  Similarity=0.367  Sum_probs=61.8

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ  195 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~  195 (258)
                      ..+.+..+.+|+.+.|.|.+.|.|.| .|.|++++..+....      .+.+.|..... +|+|.|+|.|.|..|...++
T Consensus         6 ~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~~~~l~~~~~-~d~G~Y~C~A~N~~G~~~S~   78 (85)
T d1rhfa2           6 VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGV-TQSTMFSCEAHNLKGLASSR   78 (85)
T ss_dssp             ECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESSEEEEECCC-SSCEEEEEEEEETTEEEECC
T ss_pred             EeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------CcceEEecCCc-cccEEEEEEEEcCCCcEEEE
Confidence            34566788899999999999999987 899999998876442      23455555665 89999999999999866677


Q ss_pred             eEEEEe
Q psy14532        196 NVHISV  201 (258)
Q Consensus       196 ~~~l~v  201 (258)
                      .+.|.|
T Consensus        79 ~~~v~V   84 (85)
T d1rhfa2          79 TATVHL   84 (85)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            777765

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=5.5e-15  Score=90.17  Aligned_cols=85  Identities=19%  Similarity=0.258  Sum_probs=67.6

Q ss_pred             eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ++.......+..|+.+.|.|.+.|.|.|.+.|++++..+....+.....   ...|.|.++.. +|+|.|+|.|.|..|.
T Consensus         5 i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~   83 (93)
T d1wiua_           5 ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNELGE   83 (93)
T ss_dssp             ECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCG-GGCEEEEEEEEETTEE
T ss_pred             EEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccc-cccEEEEEEEEECCCE
Confidence            3344567789999999999999999999999999998887665544432   23688999998 9999999999999884


Q ss_pred             CccceEEEEe
Q psy14532        192 SSSQNVHISV  201 (258)
Q Consensus       192 ~~~~~~~l~v  201 (258)
                       .+..+.|.|
T Consensus        84 -~~~~~~l~V   92 (93)
T d1wiua_          84 -DEAIFEVIV   92 (93)
T ss_dssp             -EEEEEEEEE
T ss_pred             -EEEEEEEEE
Confidence             445566554

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=85.83  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      .+...+.+|++++|.|.+.|.|.|.+.|++++...       ...+..|.|.++.. +|+|.|+|.|.|..+ .....+.
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~-------~~~~~~l~i~~v~~-~DsG~Y~C~a~N~~g-~~~~~~~   76 (84)
T d2nxyb2           6 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLSVSQLEL-QDSGTWTCTVLQNQK-KVEFKID   76 (84)
T ss_dssp             SCSSCEETTCCEEEEEECCTTCCCEEEEECTTCCE-------EEESSEEEESSCCG-GGCEEEEEEEEETTE-EEEEEEE
T ss_pred             CCCeEEECCCeEEEEEEeEcCCchheEEEeecccc-------eeeeeeeeeeeccc-ccccEEEEEEEeCCC-EEEEEEE
Confidence            34567889999999999999999999999976643       23456789999997 999999999999987 4556677


Q ss_pred             EEeecCC
Q psy14532        199 ISVTVPP  205 (258)
Q Consensus       199 l~v~~~p  205 (258)
                      |.|...|
T Consensus        77 v~V~~~~   83 (84)
T d2nxyb2          77 IVVLAFQ   83 (84)
T ss_dssp             ECEECCC
T ss_pred             EEEEecC
Confidence            7776544

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=1.6e-14  Score=88.80  Aligned_cols=82  Identities=21%  Similarity=0.373  Sum_probs=66.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE-----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      ..+..+..|+++.|.|.+.|.|.+.+.|++++..+.......+     .....|.|.++.. +|+|.|+|.|.|..|...
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCG-GGCEEEEEEECCSSSSCE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccc-cccEEEEEEEEECCCcEE
Confidence            3567788999999999999999999999999988765433322     2334799999998 999999999999998655


Q ss_pred             cceEEEEe
Q psy14532        194 SQNVHISV  201 (258)
Q Consensus       194 ~~~~~l~v  201 (258)
                      +..+.|.|
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56677766

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-15  Score=92.98  Aligned_cols=91  Identities=20%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      +.+...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+........       ........ .....+++|.|.++ 
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~L~I~~v-   75 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNN-------KITASYED-RVTFLPTGITFKSV-   75 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETT-------EECTTTTT-TCEEETTEEECSCC-
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccc-------eeeccccc-eeeecCceEEEecc-
Confidence            3455566778899999999999999999999999997543322111010       01111111 12334678999999 


Q ss_pred             cCCCceEEEEEEEeCCccee
Q psy14532         83 KDHDRGVYWCTATNKQGRSS  102 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~~~~~~~  102 (258)
                      +.+|+|.|+|.+.|..|...
T Consensus        76 ~~~D~G~Y~C~a~n~~G~~~   95 (105)
T d1nbqa1          76 TREDTGTYTCMVSEEGGNSY   95 (105)
T ss_dssp             CTTSCSEEEEEEEETTSSCE
T ss_pred             cccceeeEEEEEEECCCCEE
Confidence            99999999999999988765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=2.1e-14  Score=87.05  Aligned_cols=79  Identities=28%  Similarity=0.423  Sum_probs=63.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++......   ....++.|.|.++.. +|+|.|+|.|.|..|. .+..+.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~   86 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDF-EDEGTYECEAENIKGR-DTYQGR   86 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSSEEEECSCCG-GGCEEEEEEEEETTEE-EEEEEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE---eeeeeeEEEeCCCCc-cCCEEEEEEEEECCCE-EEEEEE
Confidence            45667889999999999999999999999976554322   223567899999997 9999999999999884 445666


Q ss_pred             EEee
Q psy14532        199 ISVT  202 (258)
Q Consensus       199 l~v~  202 (258)
                      |.|.
T Consensus        87 l~V~   90 (91)
T d1cs6a3          87 IIIH   90 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=1.7e-14  Score=87.05  Aligned_cols=77  Identities=27%  Similarity=0.552  Sum_probs=62.6

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS  200 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  200 (258)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+... +..+ .++.|.|.++.. +|+|.|+|.|.|..|. ....+.|.
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~-~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~~~~l~   87 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV-TDSGLVIKGVKN-GDKGYYGCRATNEHGD-KYFETLVQ   87 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE-ETTEEEESSCCS-TTCEEEEEEEEETTEE-EEEEEEEE
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE-eeeeEEECCCCh-hhCEEEEEEEEECCCE-EEEEEEEE
Confidence            356788999999999999999999999999988654 3333 456799999997 9999999999999884 44555555


Q ss_pred             e
Q psy14532        201 V  201 (258)
Q Consensus       201 v  201 (258)
                      |
T Consensus        88 V   88 (89)
T d1biha4          88 V   88 (89)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=94.21  Aligned_cols=99  Identities=21%  Similarity=0.339  Sum_probs=68.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.+.....+..+.+|++++|.|.+ .+.|.+.+.|+|++..+.............         ........+.|.|.+
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~I~~   72 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS---------SYVLNPTTGELVFDP   72 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC---------CCCCCTTTCCEEESS
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCC---------cEEEeecccceEECC
Confidence            6777555566778899999999987 478999999999988775542211111110         001112346799999


Q ss_pred             cccCCCceEEEEEEEeCCccee-eceEEEEE
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSS-SQNVHISV  110 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v  110 (258)
                      + ..+|+|.|+|.+.|..|... +..+.|.|
T Consensus        73 v-~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          73 L-SASDTGEYSCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             C-CGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             C-CcccCcEEEEEEEECCCceEEEEEEEEEE
Confidence            9 99999999999999988764 24444444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.7e-15  Score=86.81  Aligned_cols=80  Identities=24%  Similarity=0.294  Sum_probs=61.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...|....+.+|++|+|.|.+.+.+.+ .+.|++++..+...                          +.+|.|.+
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~l~i~~   54 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------------------------NSSLNIVN   54 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC--------------------------SSEEEECS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc--------------------------cceeEECC
Confidence            5889999988999999999999999888766 46678888766433                          45799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      + +.+|+|.|+|.+.+...   +..+.|.|.
T Consensus        55 v-~~~d~G~Y~C~a~~s~~---S~~v~l~V~   81 (82)
T d1f2qa1          55 A-KFEDSGEYKCQHQQVNE---SEPVYLEVF   81 (82)
T ss_dssp             C-CGGGCEEEEEECTTSSC---CCCEEEEEE
T ss_pred             C-ChhhCCcEEEEecCCCC---cccEEEEEE
Confidence            9 99999999999876533   245666664

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=8.2e-15  Score=91.37  Aligned_cols=79  Identities=20%  Similarity=0.258  Sum_probs=59.9

Q ss_pred             eeceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      .....+.+.+|+++.|.|.+ .+.|.+.+.|+|++..+.........                ....+++|.|.++ +.+
T Consensus         9 ~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~----------------~~~~~~~L~I~~v-~~~   71 (105)
T d1cs6a2           9 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF----------------VSQTTGNLYIAKT-EAS   71 (105)
T ss_dssp             SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEE----------------ECTTTCCEEESSC-CGG
T ss_pred             CCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceee----------------eecCCCEEeeccc-ccc
Confidence            33456789999999999987 67889999999998765433111111                1224678999999 999


Q ss_pred             CceEEEEEEEeCCccee
Q psy14532         86 DRGVYWCTATNKQGRSS  102 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~  102 (258)
                      |+|.|+|.+.|..+...
T Consensus        72 D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          72 DLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             GCEEEEEEEEEEETTEE
T ss_pred             cCcEEEEEEEECCCCEE
Confidence            99999999999877654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.2e-14  Score=87.05  Aligned_cols=102  Identities=16%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             CCcceeec-eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKF-IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|.... ..+.+..|++++|.|.+.+.|.+.+.|+++|..+............   .... ............|.|.+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~L~I~~   76 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYY---SVEN-PANKRRSTLITVLNISE   76 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEE---EECC-SSCGGGEEEEEEEEESS
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeee---eecc-ceeeecccceEEEEEee
Confidence            46676544 3466788999999999999999999999999887655322211100   0000 00111111234799999


Q ss_pred             cccCCCce-EEEEEEEeCCcceeeceEEEE
Q psy14532         81 VQKDHDRG-VYWCTATNKQGRSSSQNVHIS  109 (258)
Q Consensus        81 ~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~  109 (258)
                      + +..|.| .|+|.|.|..|... ..+.|.
T Consensus        77 v-~~~D~g~~Y~C~A~N~~G~~~-~~i~L~  104 (107)
T d1iray3          77 I-ESRFYKHPFTCFAKNTHGIDA-AYIQLI  104 (107)
T ss_dssp             C-CGGGGSSCEEEEEECSSCEEE-EEEEEE
T ss_pred             c-chHHCCcEEEEEEEeCCCeEE-EEEEEE
Confidence            9 999999 59999999999776 666554

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.52  E-value=2.3e-14  Score=85.38  Aligned_cols=79  Identities=18%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...|....+.+|++|+|+|.+.+.+.+ .+.|++++..+...                          +.+|.|.+
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~l~i~~   58 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------------------------ASSYFIDA   58 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS--------------------------CSEEEESS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec--------------------------ceeeEecC
Confidence            5667788888999999999999999988776 46678888765432                          45799999


Q ss_pred             cccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         81 VQKDHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      + +..|+|.|+|.+.+...   +..+.|.|
T Consensus        59 ~-~~~d~G~Y~C~a~~s~~---S~~v~L~V   84 (84)
T d1fnla1          59 A-TVNDSGEYRCQTNLSTL---SDPVQLEV   84 (84)
T ss_dssp             C-CGGGCEEEEEECSSSCC---CCCEEEEE
T ss_pred             C-cccCCEEEEEEccCCCc---cccEEEEC
Confidence            9 99999999999876432   24455544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.5e-14  Score=86.06  Aligned_cols=70  Identities=21%  Similarity=0.359  Sum_probs=59.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .....+.+|+++.|.|.+.+.++ ++|+|+|++..+....+.....+++|.|.++.. +|+|.|+|.+.|..
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQL-HDSGNYSCYRAGRP   83 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCG-GGCEEEEEESSSSC
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCCh-hcCEEEEEEECCcc
Confidence            44567788999999999988664 589999999988877776667788999999997 99999999998754

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.6e-14  Score=88.01  Aligned_cols=96  Identities=20%  Similarity=0.339  Sum_probs=66.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||++.....   ...+....|.|.+.|.|.+.+.|+++++.+....   .......         .......+.|.|.++
T Consensus         5 PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~---~~~~~~~---------~~~~~~~~~L~i~~~   69 (105)
T d1wwca_           5 PPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK---IIHVEYY---------QEGEISEGCLLFNKP   69 (105)
T ss_dssp             CCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSS---SEEEEEE---------ECSSEEEEEEEEESC
T ss_pred             CCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCc---ceeeeEE---------eecccceEEEEEeec
Confidence            676643221   2244455678899999999999999999886552   1111000         001112346999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                       +..|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus        70 -~~~D~G~Y~C~a~N~~G~~~-~~~~v~V~~~P  100 (105)
T d1wwca_          70 -THYNNGNYTLIAKNPLGTAN-QTINGHFLKEP  100 (105)
T ss_dssp             -CGGGCEEEEEEEEETTEEEE-EEEEECCSCCC
T ss_pred             -ccccceEEEEEEEcCCCEEE-EEEEEEEEeCC
Confidence             99999999999999998877 78888887665

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.8e-14  Score=85.35  Aligned_cols=81  Identities=25%  Similarity=0.388  Sum_probs=66.0

Q ss_pred             CCcceecCCcEEEEeeeCcc-cCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +...+.+|+.+.|.|.+.+. +...+.|++++..+....     ....|.|.+++. +|+|.|+|++.|..+...+..+.
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~~l~i~~~~~-~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATV-EDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCCG-GGCEEEEEEEEETTEEEECCCEE
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----ccceEEEeeeee-ecCcEEEEEEEeCCCCeEeeeEE
Confidence            34567899999999999765 456999999998775432     346799999997 99999999999988766688899


Q ss_pred             EEeecCCc
Q psy14532        199 ISVTVPPK  206 (258)
Q Consensus       199 l~v~~~p~  206 (258)
                      |.|..+|.
T Consensus        82 i~V~~~Pr   89 (89)
T d1f2qa2          82 ITVIKAPR   89 (89)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeCCC
Confidence            99988773

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.1e-14  Score=87.32  Aligned_cols=98  Identities=18%  Similarity=0.282  Sum_probs=70.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      ||.|....   ....+..+.|.|.+.|.|.+.+.|++++..+....   ...+....        .......+.|.|.++
T Consensus         4 pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~---~~~~~~~~--------~~~~~~~~~L~i~~~   69 (103)
T d1wwbx_           4 APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK---YICTKIHV--------TNHTEYHGCLQLDNP   69 (103)
T ss_dssp             CCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCS---SEEEEEEE--------ECSSEEEEEEEEESC
T ss_pred             CCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeee---eeeeeecc--------cccccceEEEEECCC
Confidence            67774322   23478888999999999999999999999886542   11111000        000112346999999


Q ss_pred             ccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                       +..|+|.|+|.+.|..|... ..+.|.|...|.
T Consensus        70 -~~~D~G~Y~C~a~N~~G~~~-~~~~v~V~~~P~  101 (103)
T d1wwbx_          70 -THMNNGDYTLIAKNEYGKDE-KQISAHFMGWPG  101 (103)
T ss_dssp             -CGGGCEEEEEEEECSSCEEE-EEEEECCSCCCC
T ss_pred             -CHHhCceEEEEEeccCCEEE-EEEEEEEEeCCC
Confidence             99999999999999999887 888888877664

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.2e-14  Score=87.94  Aligned_cols=97  Identities=19%  Similarity=0.318  Sum_probs=68.2

Q ss_pred             ceeeeecCCCceEEEE---EEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532          9 FIQQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH   85 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C---~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   85 (258)
                      |.++.+.+|..+.+.|   .+.|.|.+.+.|++++..+............         ...........|.|.++ ...
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~---------~~~~~~~~~~~L~i~~~-~~~   73 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLE---------PAANETVRHGCLRLNQP-THV   73 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEEC---------CCSSCCCEEEEEEEESC-CGG
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeee---------eeeeeeccceEEEECcc-cHH
Confidence            3455666777777665   7889999999999999988654211111000         00001112346899999 999


Q ss_pred             CceEEEEEEEeCCcceeeceEEEEEecCCee
Q psy14532         86 DRGVYWCTATNKQGRSSSQNVHISVTGAPFV  116 (258)
Q Consensus        86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~  116 (258)
                      |+|.|+|.+.|..|... ..+.|.|..+|..
T Consensus        74 D~G~Y~C~A~N~~G~~~-~~i~v~v~~~P~~  103 (107)
T d1he7a_          74 NNGNYTLLAANPFGQAS-ASIMAAFMDNPFE  103 (107)
T ss_dssp             GCEEEEEEEEETTEEEE-EEEEECCCSCTTS
T ss_pred             HCcEEEEEEEeCCCEEE-EEEEEEEEcCCCC
Confidence            99999999999999877 8888988887753

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.7e-14  Score=87.31  Aligned_cols=91  Identities=11%  Similarity=0.131  Sum_probs=67.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEee-cCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ||++...+.+..+.+|+.++|.|.+.+ .|.+  .+.|++++..+.......                   .....+|.|
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~-------------------~~~~s~l~i   64 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-------------------EPAEVTTTV   64 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-------------------TTEEEEEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc-------------------ccceEEEEE
Confidence            778888888899999999999999987 4544  688999998775431100                   012346888


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      ..+ +.+|.|.|+|.|.|..+... ..+.+.+..+
T Consensus        65 ~~~-~~dd~g~ytC~A~n~~g~~~-~~~~~~~s~p   97 (103)
T d1iama1          65 LVR-RDHHGAQFSCRTELDLRPQG-LELFENTSAP   97 (103)
T ss_dssp             ECC-SSCSSCEEEEEEEEECGGGT-SCEEEEECCC
T ss_pred             eee-hhHCCCEEEEEEEeCCCCcc-CeEeeeEcCC
Confidence            888 99999999999999887655 4555555544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.50  E-value=2.4e-14  Score=86.07  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=62.9

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +...+.+|+.++|.|.+.+ .|.+.+.|++++..+...     ..++.|.|.++.. +|+|.|+|.|.|..+...+..+.
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----~~~~~l~i~~v~~-~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----RSDPNFSIPQANH-SHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----SSCCEEEETTCCG-GGCEEEEEEEEETTEEEECCCEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-----ccccccccCccCH-HHCCeEEEEEEeCCCCEEeeeEE
Confidence            3455789999999999865 466799999999875422     2456799999997 99999999999988765677888


Q ss_pred             EEeecC
Q psy14532        199 ISVTVP  204 (258)
Q Consensus       199 l~v~~~  204 (258)
                      |.|..|
T Consensus        82 l~V~~P   87 (88)
T d2fcba2          82 ITVQAP   87 (88)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            888764

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.5e-14  Score=85.98  Aligned_cols=74  Identities=24%  Similarity=0.451  Sum_probs=58.2

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      ..+..+.+|+++.|.|.+.+ +.+.+.|++++..+....  .+.                .+..+++|.|.++ +.+|+|
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~--~~~----------------~~~~~~~L~I~~v-~~~DsG   63 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAES--PKY----------------GLMGRKNLLIFNL-SEGDSG   63 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCS--SSB----------------CCTTTTCEEECSC-CGGGCE
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeee--eee----------------ecceeeEEEECCC-CHHHCc
Confidence            45678999999999999987 667999999988775542  111                1224678999999 999999


Q ss_pred             EEEEEEEeCCccee
Q psy14532         89 VYWCTATNKQGRSS  102 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~  102 (258)
                      .|+|.+.+..+...
T Consensus        64 ~Y~C~A~n~~g~~~   77 (92)
T d1olza1          64 VYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEEEEEECSSSE
T ss_pred             EEEEEEEEcCCCEE
Confidence            99999999776543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=4.4e-14  Score=86.31  Aligned_cols=82  Identities=22%  Similarity=0.344  Sum_probs=64.6

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceE--EecCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQK--VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS  194 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~  194 (258)
                      .+....+.+|+.+.|.|.+.|.|.+ .+.|++++..+.......  ....++|.|.++.. +|.|.|+|.|.|..|...+
T Consensus         8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1           8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCG-GGCEEEEEEEEETTEEEEC
T ss_pred             cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccCh-hcCeEEEEEEEeCCCEEEE
Confidence            3556778999999999999998865 799999998886544322  23456899999997 9999999999999986555


Q ss_pred             ceEEEE
Q psy14532        195 QNVHIS  200 (258)
Q Consensus       195 ~~~~l~  200 (258)
                      ..+.|.
T Consensus        87 ~~v~l~   92 (94)
T d1biha1          87 RVISFR   92 (94)
T ss_dssp             CCEEEE
T ss_pred             EEEEEE
Confidence            555554

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.3e-14  Score=85.41  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=60.4

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ......+++|.|.++.. +|+|.|+|.|.|..+
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK-TDEGTYRCEGRILAR   80 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCG-GGCEEEEEEEEEGGG
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCH-HhCEEEEEEEEECcC
Confidence            3566788999999999999999999999999988776543  34445667899999997 999999999999754

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=4.9e-14  Score=84.81  Aligned_cols=78  Identities=19%  Similarity=0.289  Sum_probs=62.1

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +...+.+|+.+.|.|.+.+ .|.+.+.|++|+..+...     ..++.|.|.++.. +|+|.|+|.+.|..+...+..+.
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----~~~~~l~I~~v~~-~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HHNSDFHIPKATL-KDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEE
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-----ccccccEECccce-eccceEEEEEEeCCCCeEEeeEE
Confidence            3455889999999999864 566799999999775422     2456799999997 99999999999988765677788


Q ss_pred             EEeec
Q psy14532        199 ISVTV  203 (258)
Q Consensus       199 l~v~~  203 (258)
                      |.|..
T Consensus        84 itV~E   88 (89)
T d1fnla2          84 ITITQ   88 (89)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            87764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.48  E-value=2.8e-14  Score=87.62  Aligned_cols=78  Identities=24%  Similarity=0.497  Sum_probs=62.6

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce----EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ----KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+....+.    .....++|.|.++.. +|+|.|+|.|.|..|. .+..+
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~   92 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGS-INHTY   92 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCG-GGCEEEEEEEEETTEE-EEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCc-ccCEEEEEEEEECCCE-EEEEE
Confidence            45678999999999999999999999999887654322    123446899999997 9999999999999884 55666


Q ss_pred             EEEe
Q psy14532        198 HISV  201 (258)
Q Consensus       198 ~l~v  201 (258)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=83.54  Aligned_cols=86  Identities=21%  Similarity=0.300  Sum_probs=62.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      |..++.++.+.+|+++.|.|.+. .|.+.+.|++++.++..... ..+.+.             ......+|.|.++ ..
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~-~~~~~~-------------~~~~~~~L~I~~v-~~   66 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPK-SRYRIR-------------VEGKKHILIIEGA-TK   66 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTT-CSEEEE-------------EETTEEEEEEEEE-CT
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCC-ccEEEE-------------EeCCccEEEECcc-cc
Confidence            45678899999999999999985 57889999999988765421 111111             0001246999999 99


Q ss_pred             CCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         85 HDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      +|+|.|+|.+.+..     .++.|.|.
T Consensus        67 ~D~G~Y~C~a~n~~-----~~a~l~V~   88 (90)
T d1x44a1          67 ADAAEYSVMTTGGQ-----SSAKLSVD   88 (90)
T ss_dssp             TTCSEEEEEETTEE-----EEEEEEEE
T ss_pred             ccCEEEEEEEecce-----EEEEEEEE
Confidence            99999999986632     44556654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.6e-13  Score=82.91  Aligned_cols=79  Identities=25%  Similarity=0.348  Sum_probs=63.3

Q ss_pred             CCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++..+....  ....++.|.|.++.. +|+|.|+|.|.|..|. .+..+
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~-~~~~~   84 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNGILTIRNVQP-SDAGTYVCTGSNMFAM-DQGTA   84 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEEETTEEEECSCCG-GGCEEEEEEEECSSCE-EEEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc--cEeeceEEEEecCCc-ccCEEEEEEEEECCCE-EEEEE
Confidence            3456788999999999997 57788999999888765543  234577899999998 9999999999999884 45566


Q ss_pred             EEEe
Q psy14532        198 HISV  201 (258)
Q Consensus       198 ~l~v  201 (258)
                      .|.|
T Consensus        85 ~l~V   88 (89)
T d1gl4b_          85 TLHV   88 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.3e-14  Score=84.87  Aligned_cols=79  Identities=15%  Similarity=0.228  Sum_probs=57.7

Q ss_pred             CCcceeecee-eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      +|.|...+.+ ..+.+|+++.|.|.+. .|.+.+.|+++|..+.....  .+.+.             ......+|.|.+
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~--~~~~~-------------~~~~~~~L~I~~   68 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGS--KYIFE-------------SIGAKRTLTISQ   68 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSS--SSEEE-------------EETTEEEEEECS
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeee--eEeee-------------ccCCeEEeecCC
Confidence            5777777654 4689999999999985 47889999999988754321  11111             001134699999


Q ss_pred             cccCCCceEEEEEEEeC
Q psy14532         81 VQKDHDRGVYWCTATNK   97 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~   97 (258)
                      + ...|+|.|+|.+.+.
T Consensus        69 ~-~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          69 C-SLADDAAYQCVVGGE   84 (94)
T ss_dssp             C-SSSSCEEEEEEETTE
T ss_pred             C-CceecEEEEEEEeeE
Confidence            9 999999999998653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.3e-14  Score=83.90  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             CcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      ...+..|+++.|.|.+. +.|.+.+.|++.+..+.  ........+.|.|.+++. +|+|.|+|.|.|..+ ..+..+.|
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~--~~~~~~~~~~L~i~~v~~-~D~G~Y~C~Asn~~g-~~~~s~~l   87 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLG--AVQSDTGRSVLTVRNASL-SAAGTRVCVGSCGGR-TFQHTVQL   87 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC--CEEEESSEEEEEECSCCG-GGCEEEEEEEEETTE-EEEEEEEE
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee--eeeccCceeeEEcCccCh-hhCCcEEEEEEeCCC-cEEEEEEE
Confidence            45678999999999885 78889999999777653  223333456799999998 999999999999877 45666776


Q ss_pred             Eee
Q psy14532        200 SVT  202 (258)
Q Consensus       200 ~v~  202 (258)
                      .|+
T Consensus        88 ~Vy   90 (90)
T d1gsma1          88 LVY   90 (90)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=6.2e-14  Score=86.64  Aligned_cols=79  Identities=28%  Similarity=0.522  Sum_probs=61.9

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc----eEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR----QKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~----~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+.....    ... ...+.|.|.++.. +|.|.|+|.|.|..|. .+..+
T Consensus        16 t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~   93 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK-NDEAEYVCIAENKAGE-QDASI   93 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG-GGCEEEEEEEEETTEE-EEEEE
T ss_pred             EEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCc-ccCEEEEEEEEECCCE-EEEEE
Confidence            456799999999999999999999999987754321    111 2345799999998 9999999999999884 55667


Q ss_pred             EEEeec
Q psy14532        198 HISVTV  203 (258)
Q Consensus       198 ~l~v~~  203 (258)
                      .|.|..
T Consensus        94 ~l~V~~   99 (100)
T d1qz1a3          94 HLKVFA   99 (100)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            777754

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=85.32  Aligned_cols=88  Identities=14%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             eceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532          8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD   86 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d   86 (258)
                      .+....+.+|+.+.|.|.+. +.+.+.|.|+|++..+........                .....+++|.|.++ +..|
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~----------------~~~~~~~~L~I~~v-~~~D   70 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQAS----------------RIHQHKEKLWFVPA-KVED   70 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTS----------------SEEEETTEEEETTC-CGGG
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccce----------------EEeccCCEEEeccc-eecC
Confidence            34556788999999999875 568889999998765432211000                11224678999999 9999


Q ss_pred             ceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         87 RGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      +|.|+|.+.|..|... ..+.|.|...
T Consensus        71 ~G~Y~C~a~N~~g~~~-~~~~L~V~~~   96 (101)
T d1iray1          71 SGHYYCVVRNSSYCLR-IKISAKFVEN   96 (101)
T ss_dssp             CEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred             CEEEEEEEECCCCeEE-EEEEEEEEeC
Confidence            9999999999988877 7888888753

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.43  E-value=1.5e-14  Score=87.16  Aligned_cols=85  Identities=20%  Similarity=0.243  Sum_probs=63.1

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      +|..++.++.+.+|+++.|.|.+. .|.+.+.|+|+|..+...   .++.+..             .....+|.|.++ +
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~---~~~~~~~-------------~~~~~~L~I~~~-~   64 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTAS---PDCEIIE-------------DGKKHILILHNC-Q   64 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSS---SSCEEEE-------------CSSCEEEECCSC-C
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccc---eeEEEEe-------------eceeEEEEEcCC-C
Confidence            456788999999999999999974 678899999999887654   2222210             012346999999 9


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .+|+|.|+|.+.+..     .++.|.|.
T Consensus        65 ~~D~G~Y~c~a~n~~-----~sa~l~V~   87 (89)
T d1tiua_          65 LGMTGEVSFQAANAK-----SAANLKVK   87 (89)
T ss_dssp             SCCCSEECCBCSSCB-----CCEEEEEE
T ss_pred             hhcCEEEEEEECceE-----EEEEEEEE
Confidence            999999999986643     34556654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=7.5e-14  Score=85.73  Aligned_cols=81  Identities=21%  Similarity=0.396  Sum_probs=59.3

Q ss_pred             CCCcceecC---CcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        119 MGNVSAIAG---EPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       119 ~~~~~~~~g---~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      +....+..|   +.+.|.|.+.|.|.+.+.|++++..+.....  ........|.|..+.. +|.|.|+|.|.|..|...
T Consensus        11 P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~N~~G~~~   89 (97)
T d1cs6a1          11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKA-KDAGSYQCVATNARGTVV   89 (97)
T ss_dssp             CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHH-HHCEEEEEEEEETTEEEE
T ss_pred             CCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccc-cCCEEEEEEEEECCCEEE
Confidence            344444444   7899999999999999999999988764432  2223334466666776 899999999999998655


Q ss_pred             cceEEEE
Q psy14532        194 SQNVHIS  200 (258)
Q Consensus       194 ~~~~~l~  200 (258)
                      +..+.|.
T Consensus        90 S~~a~L~   96 (97)
T d1cs6a1          90 SREASLR   96 (97)
T ss_dssp             CCCEEEE
T ss_pred             EEEEEEe
Confidence            6666664

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.6e-13  Score=81.73  Aligned_cols=83  Identities=28%  Similarity=0.456  Sum_probs=61.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccC-ceEEEEeC-CcccCC-CcceEEe----cCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPI-ESITWQKG-VQQLPL-NRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~-~~~~~~-~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      +....+..|+.+.|.|.+.|.|+ +.+.|+++ +..+.. ..+....    ...+|.|.++.. +|+|.|+|.|.|..|.
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~   85 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCVVTAEDGT   85 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTTE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCch-hhceEEEEEEEeCCCc
Confidence            34567889999999999999874 79999994 443332 2233321    224699999997 9999999999999886


Q ss_pred             CccceEEEEee
Q psy14532        192 SSSQNVHISVT  202 (258)
Q Consensus       192 ~~~~~~~l~v~  202 (258)
                      ..+..+.|.|+
T Consensus        86 ~~~~tv~l~V~   96 (97)
T d1epfa1          86 QSEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            55566777764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.1e-13  Score=82.36  Aligned_cols=80  Identities=19%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--------cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      .++...|.|.+.|.|.|.+.|++++..+..+......        ..+.|.|.+++. +|.|.|+|.|.|..|. .+..+
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~   92 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYGK-DEKQI   92 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSCE-EEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCH-HhCceEEEEEeccCCE-EEEEE
Confidence            5677789999999999999999999988765543321        123599999997 9999999999999984 56778


Q ss_pred             EEEeecCCcc
Q psy14532        198 HISVTVPPKI  207 (258)
Q Consensus       198 ~l~v~~~p~~  207 (258)
                      .|.|...|.+
T Consensus        93 ~v~V~~~P~i  102 (103)
T d1wwbx_          93 SAHFMGWPGI  102 (103)
T ss_dssp             EECCSCCCCC
T ss_pred             EEEEEeCCCC
Confidence            8888777653

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-13  Score=81.75  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH  198 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~  198 (258)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+....          .+.+++. +|+|.|+|.|.|..|. .+..+.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~----------~~~~v~~-~d~G~Y~C~A~N~~G~-~~~~~~   78 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESVTVTR-DLEGTYLCRARSTQGE-VTREVT   78 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT----------SCEECCG-GGCEEEEEEEEETTEE-EEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee----------eeecccc-CCCCEEEEEEEcCCCE-EEEEEE
Confidence            345678899999999999999999999999887654322          2345666 9999999999999884 566777


Q ss_pred             EEeec
Q psy14532        199 ISVTV  203 (258)
Q Consensus       199 l~v~~  203 (258)
                      |.|..
T Consensus        79 l~V~~   83 (84)
T d2oz4a3          79 VNVLS   83 (84)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            77764

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=85.48  Aligned_cols=83  Identities=28%  Similarity=0.372  Sum_probs=61.9

Q ss_pred             CCCcceecCCcEEEEeeeCccc-CceEEEEeCCcccCCC---cceEEecC-----CeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLN---RRQKVFPN-----GTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~~~~~~~~~---~~~~~~~~-----~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +....+..|+.+.|.|.+.|.| .|.++|++++..+...   ........     ..|.|.++.. +|.|.|+|.|.|..
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLP-NDNGSYRCSANFQS   88 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCG-GGCEEEEEEEEETT
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccH-HHCCeEEEEEEcCC
Confidence            4456788999999999999988 5899999987665321   11111111     1488889997 99999999999998


Q ss_pred             CCCccceEEEEee
Q psy14532        190 GRSSSQNVHISVT  202 (258)
Q Consensus       190 ~~~~~~~~~l~v~  202 (258)
                      |...+..+.|.|.
T Consensus        89 G~~~s~~~~l~V~  101 (104)
T d2aw2a1          89 NLIESHSTTLYVT  101 (104)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CeEEEEEEEEEEE
Confidence            8655667777764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.2e-14  Score=84.62  Aligned_cols=81  Identities=23%  Similarity=0.325  Sum_probs=61.3

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE-EecCCeEEEEecccCCCCc-EEEEEEEeCCCCCccc
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK-VFPNGTLLIENVQKDHDRG-VYWCTATNKQGRSSSQ  195 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g-~y~C~~~~~~~~~~~~  195 (258)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... ......|.|.++.. +|.| .|+|.|.|..|. ...
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~~Y~C~a~N~~G~-~~~   85 (92)
T d2ifga1           8 QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS-DLNRKNVTCWAENDVGR-AEV   85 (92)
T ss_dssp             ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCS-TTTTCCEEECCEETTEE-CCE
T ss_pred             eCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccc-cccceEEEEEEEcCCCE-EEE
Confidence            3556778899999999999999999999999987765332221 22334799999997 8888 799999999884 334


Q ss_pred             eEEEE
Q psy14532        196 NVHIS  200 (258)
Q Consensus       196 ~~~l~  200 (258)
                      .+.|.
T Consensus        86 s~~l~   90 (92)
T d2ifga1          86 SVQVN   90 (92)
T ss_dssp             EECCC
T ss_pred             EEEEE
Confidence            44443

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.4e-13  Score=82.70  Aligned_cols=78  Identities=22%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--c-----CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--P-----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI  199 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~-----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  199 (258)
                      +....|.|.+.|.|.|.+.|++++..+.........  .     .+.|.|.++.. +|+|.|+|.|.|..| ..+..+.|
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G-~~~~~~~v   94 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH-YNNGNYTLIAKNPLG-TANQTING   94 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEEETTE-EEEEEEEE
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeeccc-ccceEEEEEEEcCCC-EEEEEEEE
Confidence            344568889999999999999999988765543321  1     23589999997 999999999999988 45677778


Q ss_pred             EeecCCc
Q psy14532        200 SVTVPPK  206 (258)
Q Consensus       200 ~v~~~p~  206 (258)
                      .|..+|.
T Consensus        95 ~V~~~P~  101 (105)
T d1wwca_          95 HFLKEPF  101 (105)
T ss_dssp             CCSCCCC
T ss_pred             EEEeCCC
Confidence            7776653

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.1e-12  Score=81.49  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             eccCCCcceecCCcEEEEeeeCccc---CceEEEEeCCcccC---CCcceEE----ec-----CCeEEEEecccCCCCcE
Q psy14532        116 VRPMGNVSAIAGEPLYLGCPVAGYP---IESITWQKGVQQLP---LNRRQKV----FP-----NGTLLIENVQKDHDRGV  180 (258)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~~~~~~---~~~~~~~----~~-----~~~l~i~~~~~~~~~g~  180 (258)
                      +..+....+..|+.+.|.|.+.|.|   .|.|.|++++....   .......    ..     ...|.|.++.. .|+|.
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~   82 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFAGN   82 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSCEE
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCH-HHCeE
Confidence            3446678899999999999999887   57999999764321   1111111    11     12589999997 99999


Q ss_pred             EEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        181 YWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       181 y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      |+|.|.|..|. .+..+.|.|..++.
T Consensus        83 Y~C~a~N~~G~-~~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKF-DSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCE-EEECCEEEEECCCC
T ss_pred             EEEEEEeCCCE-EEEEEEEEEEcCCC
Confidence            99999999884 55677888876554

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=80.77  Aligned_cols=68  Identities=21%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             cceecCCcEEEEe------eeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        122 VSAIAGEPLYLGC------PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       122 ~~~~~g~~~~l~C------~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      ..+..|....|.|      .+.+.|.|.|.|++++..+..........++.|.|.++.. +|+|.|+|.|.|..+
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~   82 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE-KHRGNYTCHASYTYL   82 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCG-GGCEEEEEEEEEEET
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEccccc-ccCcEEEEEEEECcC
Confidence            4567889999999      4567889999999999998776666666778999999997 999999999998765

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=80.47  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             eeeecCCCceEEEE------EEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   84 (258)
                      .+.+..|+...|.|      .+.+.|.|.+.|++++.++....  .+                 ....++.|.|.++ ..
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~--~~-----------------~~~~~~~L~I~~v-~~   67 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--IH-----------------FSGVKDRLIVMNV-AE   67 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCS--SS-----------------EEEETTEEEESSC-CG
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCC--cE-----------------EEecCCEEEEccc-cc
Confidence            36688999999999      45677889999999999886541  11                 1224568999999 99


Q ss_pred             CCceEEEEEEEeCCccee---eceEEEEEe
Q psy14532         85 HDRGVYWCTATNKQGRSS---SQNVHISVT  111 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~~---~~~~~l~v~  111 (258)
                      +|+|.|+|.+.+..+...   +..+.+.+.
T Consensus        68 ~D~G~Y~C~a~n~~~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          68 KHRGNYTCHASYTYLGKQYPITRVIEFITL   97 (103)
T ss_dssp             GGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             ccCcEEEEEEEECcCCEEEEEEEEEEEEEC
Confidence            999999999998665432   244444444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.36  E-value=7.2e-13  Score=83.01  Aligned_cols=80  Identities=28%  Similarity=0.447  Sum_probs=58.0

Q ss_pred             eeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      .+.++.+|+++.|.|.+ .|.|.|.+.|+|++..+........            ...+.....+++|.|.++ +..|+|
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~------------~~~~~~~~~~~~L~i~~v-~~~D~g   76 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD------------FDRRITAGPDGNLYFTIV-TKEDVS   76 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCC------------CCTTEEECTTSCEEEEEE-CGGGCC
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCcccccccccee------------eeeeeccccccccEEeee-EeeccC
Confidence            45678899999999986 8899999999998665432210000            011123345778999999 888776


Q ss_pred             ---EEEEEEEeCCccee
Q psy14532         89 ---VYWCTATNKQGRSS  102 (258)
Q Consensus        89 ---~Y~C~~~~~~~~~~  102 (258)
                         .|.|.|.|..+...
T Consensus        77 d~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          77 DIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             SSEEEEEEEECTTCSSC
T ss_pred             CceEEEEEEEeCCCCce
Confidence               79999999988765

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=80.62  Aligned_cols=94  Identities=10%  Similarity=0.097  Sum_probs=61.0

Q ss_pred             CCc-ceeeceeeeecCCCceEEEEEEee-c--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532          2 HPQ-LIYKFIQQTLQPGPPVSLKCIATG-N--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         2 ~p~-~~~~~~~~~~~~g~~v~l~C~~~~-~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ||. +...+.+..+.+|+.++|.|.+.+ .  |.+.+.|+|+++.+........ ...             .......|.
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~-~~~-------------~~~~~s~l~   66 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA-APA-------------PQEATATFN   66 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS-TTC-------------TTCEEEEEE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE-eec-------------ccceeEEEE
Confidence            455 456778888999999999999987 3  3448999999988754311110 000             000122456


Q ss_pred             EeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      |... +.+|.|.|+|.|.|..+... ..+.+.+.
T Consensus        67 ~~~~-~~d~g~~ytC~A~n~~~~~~-~~~~~~~s   98 (106)
T d1zxqa1          67 STAD-REDGHRNFSCLAVLDLMSRG-GNIFHKHS   98 (106)
T ss_dssp             EECC-GGGGGCEEEEEEEEECGGGT-CCEEEEEC
T ss_pred             Eeee-hhcCCcEEEEEEEecCCCCC-CeeEeccc
Confidence            6666 77888899999999876543 34444443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-12  Score=78.59  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=57.5

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeCCcccCC-CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ...+.+|+++.|.|.+.+ +.+.+.|++++..+.. ..+..+..++.|.|.++.. +|+|.|+|.|.|..+.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSE-GDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCG-GGCEEEEEEEEEECSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCH-HHCcEEEEEEEEcCCC
Confidence            356889999999999988 6689999999887654 3445556778899999998 9999999999998763

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.6e-13  Score=85.62  Aligned_cols=82  Identities=29%  Similarity=0.497  Sum_probs=61.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-----------------------------ceEEe---cCCe
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----------------------------RQKVF---PNGT  166 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-----------------------------~~~~~---~~~~  166 (258)
                      +..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....                             +..+.   ....
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            445678899999999999999999999999765543211                             11110   1125


Q ss_pred             EEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       167 l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      |.|.++.. +|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        96 L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V~  129 (130)
T d1gxea_          96 FTVEGAEK-EDEGVYTVTVKNPVGE-DQVNLTVKVI  129 (130)
T ss_dssp             EECSCCCT-TTCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             EEECcCCh-hcCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            99999997 9999999999999884 5566777664

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2e-13  Score=86.70  Aligned_cols=100  Identities=21%  Similarity=0.334  Sum_probs=69.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ||.|. .+..+.+.+|+++.|.|.+.+. +.+.+.|++++..+..... .++.+....         ........|.|.+
T Consensus         7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~-~~~~~~~~~---------~~~~~~s~L~I~~   75 (115)
T d2crya1           7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS-GRYTVETIS---------TEEGVISTLTISN   75 (115)
T ss_dssp             SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEE-TTEEEEEEE---------ETTEEEEEEECTT
T ss_pred             CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeee-eeEeeeeec---------cccCcEEEEEEec
Confidence            66664 5677889999999999999885 5568999999887755421 111111000         0000123699999


Q ss_pred             cccCCC-ceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532         81 VQKDHD-RGVYWCTATNKQGRSSSQNVHISVTGAP  114 (258)
Q Consensus        81 ~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~~~~  114 (258)
                      + ...| +|.|+|.|.|..|... ..+.|.|...+
T Consensus        76 v-~~~D~~G~Y~C~A~N~~G~~~-~~~~L~V~~~~  108 (115)
T d2crya1          76 I-VRADFQTIYNCTAWNSFGSDT-EIIRLKEQGSE  108 (115)
T ss_dssp             C-CHHHHHSCEEEEEECSSCEEE-EEECCCCSCSS
T ss_pred             c-chhcCCeEEEEEEEECCCeEE-EEEEEEEECCC
Confidence            9 8888 7999999999999876 88888776543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=81.50  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=62.4

Q ss_pred             CcceecCCcEE---EEeeeCcccCceEEEEeCCcccCCCcceEEe--c--------CCeEEEEecccCCCCcEEEEEEEe
Q psy14532        121 NVSAIAGEPLY---LGCPVAGYPIESITWQKGVQQLPLNRRQKVF--P--------NGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       121 ~~~~~~g~~~~---l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~--------~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      .+.+..|..+.   +.|.+.|.|.|.+.|++++..+.........  .        ...|.|.++.. +|.|.|+|.|.|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~A~N   84 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccH-HHCcEEEEEEEe
Confidence            33444454444   5558899999999999999988755433321  1        13589999987 999999999999


Q ss_pred             CCCCCccceEEEEeecCCc
Q psy14532        188 KQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       188 ~~~~~~~~~~~l~v~~~p~  206 (258)
                      ..|. ....+.|.|..+|.
T Consensus        85 ~~G~-~~~~i~v~v~~~P~  102 (107)
T d1he7a_          85 PFGQ-ASASIMAAFMDNPF  102 (107)
T ss_dssp             TTEE-EEEEEEECCCSCTT
T ss_pred             CCCE-EEEEEEEEEEcCCC
Confidence            9984 56778888887774

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.2e-12  Score=80.00  Aligned_cols=91  Identities=15%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             eeeecCCCceEEEEEEe-e-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532         11 QQTLQPGPPVSLKCIAT-G-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~-~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G   88 (258)
                      .+....|++|+|.|... . .....|.|++++..+.......         .......+.....+++|.|.++ +.+|+|
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~---------~~~~~~~~~~~~~ngSL~I~nl-~~~DsG   73 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKM---------KPFLKSGAFEILANGDLKIKNL-TRDDSG   73 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTS---------CCEESSTTEEECTTSCEEESSC-CGGGCE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCC---------ccccCCCeEEECCCccEEEeCC-CHHHCE
Confidence            35667899999999632 2 2334799999887664321111         1112234556667899999999 999999


Q ss_pred             EEEEEEEeCCcce-eeceEEEEEe
Q psy14532         89 VYWCTATNKQGRS-SSQNVHISVT  111 (258)
Q Consensus        89 ~Y~C~~~~~~~~~-~~~~~~l~v~  111 (258)
                      .|+|.+.+..|.. ..+.+.|.|+
T Consensus        74 ~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          74 TYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEEEEEEEE
Confidence            9999999988765 3478888876

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.9e-12  Score=80.39  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             eccCCCcceecCCcEEEEeeeCccc---CceEEEEeCCcccCCC---cceEEe---------cCCeEEEEecccCCCCcE
Q psy14532        116 VRPMGNVSAIAGEPLYLGCPVAGYP---IESITWQKGVQQLPLN---RRQKVF---------PNGTLLIENVQKDHDRGV  180 (258)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~~~~~~~~---~~~~~~---------~~~~l~i~~~~~~~~~g~  180 (258)
                      +..+....+..|++++|.|.+.|.|   .|.|.|++++......   ......         ....|.|.+++. .|+|.
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~   86 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP-AFTGG   86 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT-TCCEE
T ss_pred             EECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH-HHCcE
Confidence            3445678899999999999999887   5789999977532211   111111         123699999997 99999


Q ss_pred             EEEEEEeCCCCCccceEEEEeec
Q psy14532        181 YWCTATNKQGRSSSQNVHISVTV  203 (258)
Q Consensus       181 y~C~~~~~~~~~~~~~~~l~v~~  203 (258)
                      |+|.|.|..| ..+..+.|.|..
T Consensus        87 Y~C~a~N~~G-~~~~~~~L~V~~  108 (110)
T d2avga1          87 YRCEVSTKDK-FDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEETTE-EEEEEEEEEEES
T ss_pred             EEEEEEECCC-eEEEEEEEEEEe
Confidence            9999999988 456777787764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.33  E-value=1.3e-12  Score=81.14  Aligned_cols=72  Identities=24%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             CCCcceecCCcEEEEeee-CcccCceEEEEeCCcccCCCc---ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNR---RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR  191 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~  191 (258)
                      ...+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+....   ......+++|.|.++.. +|+|.|+|.|.|..+.
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEA-SDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCG-GGCEEEEEEEEEEETT
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeeccccc-ccCcEEEEEEEECCCC
Confidence            345679999999999997 678899999999987654322   23334567899999998 9999999999998764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=78.52  Aligned_cols=85  Identities=21%  Similarity=0.291  Sum_probs=59.4

Q ss_pred             eccCCCcceecCCcEEEEeeeCcccCceEEEEe---CCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK---GVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~---~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +....+..+..|+++.|.|.+.|.|.|.+.|++   ++..........+..   .++|.|.++.. +|+|.|+|.|.|..
T Consensus         5 f~~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~   83 (96)
T d2c9aa1           5 FLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMIRTEG   83 (96)
T ss_dssp             ECCCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCG-GGCSEEEEEEEETT
T ss_pred             ecccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCH-HHCeEEEEEEEeCC
Confidence            334667889999999999999998876544332   223232222222222   24699999998 99999999999999


Q ss_pred             CCCccceEEEEe
Q psy14532        190 GRSSSQNVHISV  201 (258)
Q Consensus       190 ~~~~~~~~~l~v  201 (258)
                      |...+....|.|
T Consensus        84 G~~~s~~a~L~V   95 (96)
T d2c9aa1          84 GVGISNYAELVV   95 (96)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CeEEEEEEEEEE
Confidence            865566566665

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.7e-12  Score=82.73  Aligned_cols=106  Identities=17%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             eeeceeeeecCCCceEEEEEEeec---CCCeEEEeeCCEeCcCCccccceecccceeeccccccceee------eeCCcE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGTL   76 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l   76 (258)
                      ..+...+.+.+|++|+|.|.+...   ....+.|++.+...............  ......+..+...      ..+.+|
T Consensus         6 ~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~sL   83 (126)
T d1pkoa_           6 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQD--AEQAPEYRGRTELLKESIGEGKVAL   83 (126)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECG--GGSCSTTTTSEEEECTTGGGTEEEE
T ss_pred             ECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccc--cccccccceeEEEeeccccCCeEEE
Confidence            334445788999999999997532   23468999864321100000000000  0001111112111      124579


Q ss_pred             EEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF  115 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~  115 (258)
                      .|.++ +.+|+|.|+|.+.+..+... ..+.|.|.+|..
T Consensus        84 ~I~~v-~~~D~G~Y~C~v~~~~~~~~-~~v~L~V~~P~~  120 (126)
T d1pkoa_          84 RIQNV-RFSDEGGYTCFFRDHSYQEE-AAVELKVEDPFY  120 (126)
T ss_dssp             EESSC-CGGGCEEEEEEEEETTEEEE-EEEEEEEECTTT
T ss_pred             EEEEE-chhHCeEEEEEEEECCCEEE-EEEEEEEeCCCE
Confidence            99999 99999999999998876665 788899987654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.1e-12  Score=79.75  Aligned_cols=81  Identities=25%  Similarity=0.413  Sum_probs=60.5

Q ss_pred             cceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcce-----------EEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        122 VSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQ-----------KVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..+..|+.+.|.|.+. |.|.+.+.|++++..+......           .....+.|.|.+++. +|+|.|+|.|.|..
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEYYCQAQNGY   90 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG-GGCEEEEEEEECSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCc-cCCEEEEEEEEECC
Confidence            3578899999999984 7899999999998765432211           112334699999997 99999999999998


Q ss_pred             CCCc-cceEEEEeec
Q psy14532        190 GRSS-SQNVHISVTV  203 (258)
Q Consensus       190 ~~~~-~~~~~l~v~~  203 (258)
                      |... +..+.|.|..
T Consensus        91 G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          91 GTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SCCEECCCEEEEEES
T ss_pred             CcEEEEEEEEEEEEe
Confidence            7543 4567777764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.3e-12  Score=77.91  Aligned_cols=82  Identities=24%  Similarity=0.348  Sum_probs=58.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccC------CCcceEEec---CCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLP------LNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++++....      ...++.+..   ...|.|.++..+.|+|.|+|.|.|.
T Consensus         9 ~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~   88 (101)
T d3b5ha1           9 KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS   88 (101)
T ss_dssp             CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred             CCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEEC
Confidence            455678899999999999998877 799999754332      112222222   2368888887437999999999999


Q ss_pred             CCCCccceEEEEe
Q psy14532        189 QGRSSSQNVHISV  201 (258)
Q Consensus       189 ~~~~~~~~~~l~v  201 (258)
                      .|. .+..+.|.|
T Consensus        89 ~G~-~~~~~~L~V  100 (101)
T d3b5ha1          89 KGS-DQAIITLRV  100 (101)
T ss_dssp             TEE-EEEEEEEEE
T ss_pred             CCE-EEEEEEEEE
Confidence            884 445566655

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=80.71  Aligned_cols=85  Identities=15%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             CCcceecCCcEEEEeeeCc-ccCc--eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        120 GNVSAIAGEPLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~-~~~~--~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ....+.+|+.++|.|.+.| .|.+  .++|++++..+.............|.|..+.. +|+|.|+|+|.|..+. ....
T Consensus        12 ~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~-dd~g~ytC~A~n~~g~-~~~~   89 (103)
T d1iama1          12 LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD-HHGAQFSCRTELDLRP-QGLE   89 (103)
T ss_dssp             CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSS-CSSCEEEEEEEEECGG-GTSC
T ss_pred             CCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehh-HCCCEEEEEEEeCCCC-ccCe
Confidence            3456788999999999976 5655  68899998877543222222234678877765 8999999999998873 3445


Q ss_pred             EEEEeecCCc
Q psy14532        197 VHISVTVPPK  206 (258)
Q Consensus       197 ~~l~v~~~p~  206 (258)
                      +.+.+..++.
T Consensus        90 ~~~~~s~p~~   99 (103)
T d1iama1          90 LFENTSAPYQ   99 (103)
T ss_dssp             EEEEECCCEE
T ss_pred             EeeeEcCCCE
Confidence            5566655443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=81.35  Aligned_cols=74  Identities=19%  Similarity=0.386  Sum_probs=56.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-----------ceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----------RQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-----------~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      .+.+.+.+|+++.|.|.+.+.|.|.+.|++++..+....           ......+++|.|.++.. +|.|.|+|.|.|
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n   89 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-EDTGTYTCMVSE   89 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCT-TSCSEEEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccc-cceeeEEEEEEE
Confidence            345678899999999999999999999999765443111           11112345799999997 999999999999


Q ss_pred             CCCCCc
Q psy14532        188 KQGRSS  193 (258)
Q Consensus       188 ~~~~~~  193 (258)
                      ..|...
T Consensus        90 ~~G~~~   95 (105)
T d1nbqa1          90 EGGNSY   95 (105)
T ss_dssp             TTSSCE
T ss_pred             CCCCEE
Confidence            988543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-12  Score=79.88  Aligned_cols=80  Identities=29%  Similarity=0.450  Sum_probs=59.6

Q ss_pred             CcceecCCcEEEEeee-CcccCceEEEEeCCcccCCCcceEE----------ecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        121 NVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKV----------FPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ...+..|+.+.|.|.+ .|.|.+.+.|++++..+........          ...+.|.|.++.. +|.|.|+|.|.|..
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEARNGY   89 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCEEEEEECSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCc-ccCcEEEEEEEECC
Confidence            3567889999999998 5789999999999887654332211          1234689999997 99999999999998


Q ss_pred             CCCc-cceEEEEe
Q psy14532        190 GRSS-SQNVHISV  201 (258)
Q Consensus       190 ~~~~-~~~~~l~v  201 (258)
                      |... +..++|.+
T Consensus        90 G~~~~s~~v~v~v  102 (104)
T d1nbqa2          90 GTPMTSNAVRMEA  102 (104)
T ss_dssp             SCCEECCCBCCEE
T ss_pred             CceEEEEEEEEEE
Confidence            8543 34444444

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=3.5e-12  Score=78.92  Aligned_cols=74  Identities=18%  Similarity=0.407  Sum_probs=56.4

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-----------cceEEecCCeEEEEecccCCCCcEEEEEEE
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-----------RRQKVFPNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-----------~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      +.....+.+|+++.|.|.+.+.|.+.+.|++++......           .......+++|.|.++.. +|+|.|+|.+.
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~-~D~G~Y~C~a~   85 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR-KDNGEYTCMVS   85 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCG-GGCEEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCc-cCCEEEEEEEE
Confidence            345577899999999999999999999999865432210           111122456799999998 99999999999


Q ss_pred             eCCCCC
Q psy14532        187 NKQGRS  192 (258)
Q Consensus       187 ~~~~~~  192 (258)
                      |..+..
T Consensus        86 n~~g~~   91 (102)
T d1f97a1          86 EEGGQN   91 (102)
T ss_dssp             ETTSSS
T ss_pred             ECCCCE
Confidence            998753

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.29  E-value=3.1e-12  Score=80.22  Aligned_cols=81  Identities=30%  Similarity=0.351  Sum_probs=58.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCC----Ccc--eE------E----ecCCeEEEEecccCCCCcEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL----NRR--QK------V----FPNGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~----~~~--~~------~----~~~~~l~i~~~~~~~~~g~y~  182 (258)
                      +....+..|+++.|.|.+.|.|.|.|.|++++.....    ...  ..      .    .....|.|.++.. +|.|.|+
T Consensus        12 P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~   90 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF-EDAGEYT   90 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG-GGCEEEE
T ss_pred             CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH-HHCeEEE
Confidence            4567899999999999999999999999986543211    000  00      0    1124699999997 9999999


Q ss_pred             EEEEeCCCCCccceEEEEe
Q psy14532        183 CTATNKQGRSSSQNVHISV  201 (258)
Q Consensus       183 C~~~~~~~~~~~~~~~l~v  201 (258)
                      |.|.|..|. ....+.|.|
T Consensus        91 C~a~N~~G~-~~~~~~L~V  108 (109)
T d2fdbp2          91 CLAGNSIGI-SFHSAWLTV  108 (109)
T ss_dssp             EEEECSSCE-EEEEEEEEE
T ss_pred             EEEEECCCE-EEEEEEEEE
Confidence            999999884 445566655

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3e-12  Score=77.79  Aligned_cols=89  Identities=17%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeecccccccee-eeeCCcEEEeecccCCCce
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK-VFPNGTLLIENVQKDHDRG   88 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~d~G   88 (258)
                      .++.+..|++|+|.|... .|.+.+.|++++..+....... .      .....+..+.. ...+++|.|.++ +.+|+|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~~~sL~I~~l-~~~DsG   73 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSE-F------RAFSSFKNRVYLDTVSGSLTIYNL-TSSDED   73 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTE-E------EECGGGTTSEEECTTTCCEEECSC-CGGGCE
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecc-e------eeCCCccceEEEcCCeeEEEEEec-ChhhCE
Confidence            456788999999999764 5788999999887654321111 1      11111222222 224678999999 999999


Q ss_pred             EEEEEEEeCCcceeeceEEEEE
Q psy14532         89 VYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        89 ~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .|+|.+.+..+.   ..+.|+|
T Consensus        74 ~Y~c~~~n~~~t---~~~~l~V   92 (93)
T d1ccza1          74 EYEMESPNITDT---MKFFLYV   92 (93)
T ss_dssp             EEEEECTTCCSC---EEEEEEE
T ss_pred             EEEEEEECCCcE---EEEEEEE
Confidence            999998776543   3455555

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-11  Score=74.54  Aligned_cols=78  Identities=22%  Similarity=0.351  Sum_probs=58.9

Q ss_pred             cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ++.+..+..|+.+.|.|.+. .|.+.+.|++++..+.....  +.+..+   .+|.|.++.. +|+|.|+|.|.|.    
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~----   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSVMTTGG----   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEEEETTE----
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECcccc-ccCEEEEEEEecc----
Confidence            45677899999999999985 58889999999987765433  333332   3699999997 9999999999763    


Q ss_pred             ccceEEEEee
Q psy14532        193 SSQNVHISVT  202 (258)
Q Consensus       193 ~~~~~~l~v~  202 (258)
                       +....|.|.
T Consensus        80 -~~~a~l~V~   88 (90)
T d1x44a1          80 -QSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEE
T ss_pred             -eEEEEEEEE
Confidence             234555554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.27  E-value=1.2e-12  Score=78.63  Aligned_cols=79  Identities=20%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             ccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532        117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSS  193 (258)
Q Consensus       117 ~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~  193 (258)
                      .++.+..+.+|+++.|.|.+ +.|.+.+.|++++..+....++.+...+   .|.|.++.. +|+|.|+|.+.|..    
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~n~~----   79 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAANAK----   79 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCS-CCCSEECCBCSSCB----
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCCh-hcCEEEEEEECceE----
Confidence            34667889999999999998 4688899999999999888777765544   599999997 99999999987642    


Q ss_pred             cceEEEEee
Q psy14532        194 SQNVHISVT  202 (258)
Q Consensus       194 ~~~~~l~v~  202 (258)
                       .+..|.|.
T Consensus        80 -~sa~l~V~   87 (89)
T d1tiua_          80 -SAANLKVK   87 (89)
T ss_dssp             -CCEEEEEE
T ss_pred             -EEEEEEEE
Confidence             33455554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-13  Score=87.14  Aligned_cols=95  Identities=24%  Similarity=0.408  Sum_probs=69.5

Q ss_pred             EEEecCCeeccCCCcceecCCcEEEEeeeCcc-cCceEEEEeCCcccCCCcc--eEE----ecC---CeEEEEecccCCC
Q psy14532        108 ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRR--QKV----FPN---GTLLIENVQKDHD  177 (258)
Q Consensus       108 l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~~~~~~~--~~~----~~~---~~l~i~~~~~~~~  177 (258)
                      |+|..+|.+.......+.+|+.+.|.|.+.+. |.+.+.|++++..+.....  +.+    ..+   ..|.|.++.. .|
T Consensus         2 L~V~~Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D   80 (115)
T d2crya1           2 LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR-AD   80 (115)
T ss_dssp             CCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH-HH
T ss_pred             eEEecCCEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch-hc
Confidence            45667777766667778899999999999885 4568999999887754321  211    111   2588889987 77


Q ss_pred             -CcEEEEEEEeCCCCCccceEEEEeecC
Q psy14532        178 -RGVYWCTATNKQGRSSSQNVHISVTVP  204 (258)
Q Consensus       178 -~g~y~C~~~~~~~~~~~~~~~l~v~~~  204 (258)
                       +|.|+|.|.|..|. .+..+.|.|...
T Consensus        81 ~~G~Y~C~A~N~~G~-~~~~~~L~V~~~  107 (115)
T d2crya1          81 FQTIYNCTAWNSFGS-DTEIIRLKEQGS  107 (115)
T ss_dssp             HHSCEEEEEECSSCE-EEEEECCCCSCS
T ss_pred             CCeEEEEEEEECCCe-EEEEEEEEEECC
Confidence             79999999999984 556666666543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.23  E-value=2.3e-11  Score=76.02  Aligned_cols=70  Identities=36%  Similarity=0.581  Sum_probs=55.6

Q ss_pred             cceecCCcEEEEeee-CcccCceEEEEeCCcccCCC-------cceEEecCCeEEEEecccCCCCc---EEEEEEEeCCC
Q psy14532        122 VSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLN-------RRQKVFPNGTLLIENVQKDHDRG---VYWCTATNKQG  190 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~~~~g---~y~C~~~~~~~  190 (258)
                      ..+.+|+++.|.|.+ .|.|.|.+.|++++..+...       .+.....+++|.|.+++. +|+|   .|.|.|.|..+
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK-EDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECG-GGCCSSEEEEEEEECTTC
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEe-eccCCceEEEEEEEeCCC
Confidence            346789999999997 78999999999987654322       234556778999999987 6666   79999999987


Q ss_pred             CC
Q psy14532        191 RS  192 (258)
Q Consensus       191 ~~  192 (258)
                      ..
T Consensus        91 ~~   92 (111)
T d1biha2          91 DE   92 (111)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=74.59  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=62.0

Q ss_pred             CcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCC--cce-EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532        121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLN--RRQ-KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN  196 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~--~~~-~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~  196 (258)
                      ...+.+|+.+.|.|.+. +.|.+.|.|++++..+...  ... ....+++|.|.++.. +|+|.|+|.+.|..+. ....
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~-~~~~   88 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV-EDSGHYYCVVRNSSYC-LRIK   88 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCG-GGCEEEEEEEEETTEE-EEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEecccee-cCCEEEEEEEECCCCe-EEEE
Confidence            35567899999999885 5788999999988665422  111 223567899999997 9999999999998874 4566


Q ss_pred             EEEEeec
Q psy14532        197 VHISVTV  203 (258)
Q Consensus       197 ~~l~v~~  203 (258)
                      +.|.|..
T Consensus        89 ~~L~V~~   95 (101)
T d1iray1          89 ISAKFVE   95 (101)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            7777764

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.20  E-value=2.8e-11  Score=71.66  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+.+|++++|.|.+.+.+.+ .+.|++++..+.       .....|.|.++.. +|+|.|+|.+.+..   .+..+
T Consensus        12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~-~d~G~Y~C~a~~s~---~S~~v   80 (84)
T d1fnla1          12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-------SQASSYFIDAATV-NDSGEYRCQTNLST---LSDPV   80 (84)
T ss_dssp             SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-------SSCSEEEESSCCG-GGCEEEEEECSSSC---CCCCE
T ss_pred             CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee-------ecceeeEecCCcc-cCCEEEEEEccCCC---ccccE
Confidence            445678999999999999988876 466677776543       2346799999998 99999999997653   34566


Q ss_pred             EEEe
Q psy14532        198 HISV  201 (258)
Q Consensus       198 ~l~v  201 (258)
                      .|.|
T Consensus        81 ~L~V   84 (84)
T d1fnla1          81 QLEV   84 (84)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            6654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.19  E-value=3.8e-11  Score=71.27  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+.+|+.++|.|.+.+.+.+ .+.|++++..+..       .+..|.|.++.. +|+|.|+|.+.|..   .+..+
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-------~~~~l~i~~v~~-~dsG~Y~C~a~ns~---~S~~v   79 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-------HTQPSYRFKANN-NDSGEYTCQTGQTS---LSDPV   79 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT-------CCSSEEEEECCG-GGCEEEEEECTTSB---CCCCE
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc-------cccceEEeeccc-cCCcEEEEECCCCc---ccccE
Confidence            345678899999999999887755 6889999887653       345789999997 99999999998753   35667


Q ss_pred             EEEee
Q psy14532        198 HISVT  202 (258)
Q Consensus       198 ~l~v~  202 (258)
                      .|.|.
T Consensus        80 ~l~V~   84 (85)
T d2fcba1          80 HLTVL   84 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-11  Score=73.41  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=51.3

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-ceEEec-C--CeEEEEecccCCCCcEEEEEEEeC
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-RQKVFP-N--GTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~-~--~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      ..+.+|+.+.|.|.+.+ |.+.+.|++++..+.... ...+.. .  ..|.|.++.. +|+|.|+|.|.|.
T Consensus        16 ~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL-ADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSS-SSCEEEEEEETTE
T ss_pred             EEECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCc-eecEEEEEEEeeE
Confidence            46889999999999854 888999999999886543 333322 2  2699999998 9999999999663

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.7e-11  Score=70.77  Aligned_cols=73  Identities=23%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV  197 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~  197 (258)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..       .+..|.|.+++. +|+|.|+|.+.+..   .+..+
T Consensus         8 P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~v~~-~d~G~Y~C~a~~s~---~S~~v   76 (82)
T d1f2qa1           8 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKF-EDSGEYKCQHQQVN---ESEPV   76 (82)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------CSSEEEECSCCG-GGCEEEEEECTTSS---CCCCE
T ss_pred             CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec-------ccceeEECCCCh-hhCCcEEEEecCCC---CcccE
Confidence            344678899999999999988766 5667888776543       345799999998 99999999998753   35567


Q ss_pred             EEEee
Q psy14532        198 HISVT  202 (258)
Q Consensus       198 ~l~v~  202 (258)
                      .|.|.
T Consensus        77 ~l~V~   81 (82)
T d1f2qa1          77 YLEVF   81 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.5e-11  Score=75.63  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=57.0

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE------e---------cCCeEEEEecccCCCCc-EEEEEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV------F---------PNGTLLIENVQKDHDRG-VYWCTA  185 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~------~---------~~~~l~i~~~~~~~~~g-~y~C~~  185 (258)
                      ..+..|+++.|.|.+.+.|.+.+.|++++..+........      .         ....|.|.+++. +|.| .|+|.|
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~~Y~C~A   90 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES-RFYKHPFTCFA   90 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG-GGGSSCEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch-HHCCcEEEEEE
Confidence            4567899999999999999999999999877653321111      0         113699999997 8988 599999


Q ss_pred             EeCCCCCccceEEEE
Q psy14532        186 TNKQGRSSSQNVHIS  200 (258)
Q Consensus       186 ~~~~~~~~~~~~~l~  200 (258)
                      .|..|. .+..+.|.
T Consensus        91 ~N~~G~-~~~~i~L~  104 (107)
T d1iray3          91 KNTHGI-DAAYIQLI  104 (107)
T ss_dssp             ECSSCE-EEEEEEEE
T ss_pred             EeCCCe-EEEEEEEE
Confidence            999984 34444443

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.1e-10  Score=74.19  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=57.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCcccccee--cccc-eeeccccccce-eeee---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNR--IGEA-RVQQLPLNRRQ-KVFP---   72 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~-~~~~---   72 (258)
                      .|++.+.|..+.+.+|++|+|.|...+.....+.|||-  +..+..........  .... .........+. ....   
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            48888999999999999999999987776778999972  22211100000000  0000 00011111111 1111   


Q ss_pred             CCcEEEeecccCCCceEEEEEEEe
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      ..+|.|.++ +.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~-~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKF-SKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSC-CGGGCEEEEEEEEE
T ss_pred             EeEEEEccc-ccCCCEEEEeeEeC
Confidence            236999999 99999999998764

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.2e-11  Score=72.88  Aligned_cols=80  Identities=13%  Similarity=0.125  Sum_probs=52.2

Q ss_pred             CcceecCCcEEEEeeeCc-c--cCceEEEEeCCcccCCCcceEEe---cC--CeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        121 NVSAIAGEPLYLGCPVAG-Y--PIESITWQKGVQQLPLNRRQKVF---PN--GTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~-~--~~~~i~W~~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      ...+.+|+.++|.|.+.| .  |.+.++|++++..+.........   ..  ..|.+.... ++|+|.|+|+|.|..+. 
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~-~d~g~~ytC~A~n~~~~-   88 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADR-EDGHRNFSCLAVLDLMS-   88 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCG-GGGGCEEEEEEEEECGG-
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeeh-hcCCcEEEEEEEecCCC-
Confidence            345778999999999976 4  44589999999876533221111   11  135555554 47888999999998763 


Q ss_pred             ccceEEEEee
Q psy14532        193 SSQNVHISVT  202 (258)
Q Consensus       193 ~~~~~~l~v~  202 (258)
                      ....+.+.+.
T Consensus        89 ~~~~~~~~~s   98 (106)
T d1zxqa1          89 RGGNIFHKHS   98 (106)
T ss_dssp             GTCCEEEEEC
T ss_pred             CCCeeEeccc
Confidence            2334444444

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.09  E-value=2.5e-10  Score=71.65  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=55.6

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceeeccccccc-eeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~   80 (258)
                      ++.+.|..+.+.+|++|+|.|.........+.||+..  .....-   ..............+..+ .......+|.|.+
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~   78 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSL---TIMTFSENTKSNGRYTATLDADTKQSSLHITA   78 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEE---EEECSSCSCEEETTEEECBCSSSSEEEEEECS
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEe---eeeeeeecccccCccceeecCcccccccEEcc
Confidence            4677888999999999999999876666689999832  111000   000000011111111111 1111244699999


Q ss_pred             cccCCCceEEEEEEEeCC
Q psy14532         81 VQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~   98 (258)
                      + +.+|+|.|.|.+....
T Consensus        79 ~-~~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          79 S-QLSDSASYICVVSDRG   95 (114)
T ss_dssp             C-CGGGCSEEEEEEECSC
T ss_pred             c-ChhhCcccceeeecCC
Confidence            9 9999999999988643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.8e-11  Score=72.09  Aligned_cols=85  Identities=20%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceeccc-ceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGE-ARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV   89 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~   89 (258)
                      .+...+|++|+|.|.........+.|++.................. ................+.+|.|.++ +.+|+|.
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l-~~~DsG~   81 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDT   81 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSC-CGGGCEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCC-ChHHCEE
Confidence            3567899999999988766667899998532111110001100000 0000111110111122457999999 9999999


Q ss_pred             EEEEEEe
Q psy14532         90 YWCTATN   96 (258)
Q Consensus        90 Y~C~~~~   96 (258)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999864

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.1e-10  Score=72.52  Aligned_cols=104  Identities=16%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceec--ccceeeccccccceeee------eC
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRI--GEARVQQLPLNRRQKVF------PN   73 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~   73 (258)
                      ..+...+.+.+|++|+|.|.+...+    ...+.|++................  .........+..|....      .+
T Consensus         8 t~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   87 (124)
T d1eaja_           8 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGD   87 (124)
T ss_dssp             SSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTB
T ss_pred             EccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCE
Confidence            3334557789999999999986432    236889873211110000000000  00000111222222221      24


Q ss_pred             CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  111 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~  111 (258)
                      .+|.|.++ +.+|+|.|.|.+.+..+... ..+.|.|.
T Consensus        88 ~sL~I~~v-~~~D~G~Y~C~v~~~~~~~~-~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNL-QLSDIGTYQCKVKKAPGVAN-KKIHLVVL  123 (124)
T ss_dssp             CCEEECSC-CGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EEEEEccc-EEccCEEEEEEEEECCCeEE-eEEEEEEE
Confidence            57999999 99999999999998876554 67777775

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.05  E-value=3.1e-09  Score=65.47  Aligned_cols=86  Identities=20%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee---CCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP---NGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i   78 (258)
                      ++.+.|..+.+.+|++|+|.|.........+.||+.  +....       ..+............+.....   +.+|.|
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i   75 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNN-------LLIYSGSTLQSGIPSRFSGSGSGTDFTLTI   75 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCE-------EEEETTTEECTTCCTTEEEEESSSEEEEEE
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCe-------EEEEeeccccCCccccccccCCCCEEEeEe
Confidence            356778889999999999999987655567999983  22110       000111111111111111112   236999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.....
T Consensus        76 ~~l-~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          76 SSL-EPEDFAMYICQQHNE   93 (108)
T ss_dssp             CSC-CTTCCSEEEEEECSS
T ss_pred             eee-EeccceEEEEeeCCC
Confidence            999 999999999976543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.04  E-value=2e-09  Score=66.24  Aligned_cols=85  Identities=20%  Similarity=0.342  Sum_probs=53.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  |+...       ..+............+....   .+.+|.|.
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~-------~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   76 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPK-------FLISEGNTLRPGVPSRFSSSGTGTDFVFTIE   76 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCE-------EEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceE-------EEEeccCccccCCCcceeEeCCCCeeeeccc
Confidence            45778889999999999999876555557999973  32211       01111111111112221111   23469999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.....
T Consensus        77 ~~-~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          77 NT-LSEDVGDYYCLQSFN   93 (106)
T ss_dssp             SC-CGGGCEEEEEEECSS
T ss_pred             CC-ccccCEEEeEecCcc
Confidence            99 999999999976543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.03  E-value=2.4e-09  Score=65.79  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee---eeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK---VFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  |+....      +... ..........+..   ...+.+|.|.
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~   76 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKR------LIYD-ATKLDSGAPKRFSGSRSGSDYSLTIS   76 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEE------EEET-TTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCccee------EEec-cccccCCCCCceEecccCCEEEEEEh
Confidence            45778889999999999999887665667999983  322110      0000 0000111111111   1123479999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        77 ~l-~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          77 SL-ESEDFADYYCLQYAS   93 (107)
T ss_dssp             SC-CGGGCSEEEEEECSS
T ss_pred             hh-cccCCeEEEEecCcC
Confidence            99 999999999976543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=3.4e-09  Score=65.40  Aligned_cols=85  Identities=25%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  |+....-       +............+.   ....+.+|.|.
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l-------~~~~~~~~~~~~~~fs~~~~~~~~~L~I~   76 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLL-------IKYASQSISGIPSRFSGSGSGTDFTLSIN   76 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEE-------EETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEe-------eecccCCCceeCCcceecccCCEEEEEEc
Confidence            45778889999999999999876555567999984  2221100       000000001111111   11223469999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|...+.
T Consensus        77 ~~-~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          77 SV-ETEDFGMYFCQQANS   93 (107)
T ss_dssp             SC-CGGGCEEEEEEECSS
T ss_pred             cc-CcCCCEEEEEEcCCC
Confidence            99 999999999976543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.01  E-value=3.5e-10  Score=70.83  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccc-cceeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLN-RRQKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~   80 (258)
                      ++.+.|..+.+.+|++|+|.|...+.....+.|||.  ++....-   ..............+. .........+|.|.+
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   78 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSL---LLIQSSQREQTSGRLNASLDKSSGRSTLYIAA   78 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEE---EEEETTCCEEEETTEEEEEETTTTEEEEEESS
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEecccccccee---eeeccceecccccceeeeeccCCCEEEeeeec
Confidence            466778889999999999999987665567999983  2211000   0000000000000000 000011234699999


Q ss_pred             cccCCCceEEEEEEEeCC
Q psy14532         81 VQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~   98 (258)
                      + +.+|+|.|.|.+....
T Consensus        79 ~-~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          79 S-QPGDSATYLCAVRPTS   95 (113)
T ss_dssp             C-CGGGCEEEEEEEEESS
T ss_pred             C-CCCCCcEEeEeEecCC
Confidence            9 9999999999987654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.01  E-value=3.3e-09  Score=65.34  Aligned_cols=85  Identities=18%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|...+.....+.|||.  +.....       .+............+...   ..+.+|.|.
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~-------i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   76 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRL-------LISGATSLETWVPSRFSGSDSGKDYTLSIT   76 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE-------EEETTTEECTTSCTTEEEECSSSSEEEEES
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCcccee-------EEeeccccCCccccccceecCCCeEEeEEc
Confidence            34668889999999999999887654557999983  221110       000001111111111111   123569999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        77 ~~-~~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          77 SL-QTEDVATYFCQQYWS   93 (107)
T ss_dssp             SC-CGGGCSEEEEEECSS
T ss_pred             cc-ccccCCcEEEeeccC
Confidence            99 999999999987643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.4e-09  Score=65.59  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...+..+ +..|++|+|.|... .....+.|+|++........... ..                ...+.+.|.++
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~-~~----------------~~~a~F~i~~v   64 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPP-ER----------------INKVKFYIPDM   64 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSC-TT----------------CCEEEEEESSC
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccC-CC----------------ccEEEEEEeee
Confidence            57777777554 77999999999865 34568999998764321100000 00                01246889999


Q ss_pred             ccCCCceEEEEEEEeCCc-ceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQG-RSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~  111 (258)
                       +..|+|.|+|...+... ...+..+.|.|.
T Consensus        65 -~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          65 -NSRMAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             -CGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             -ecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence             99999999999876543 223466666664

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.99  E-value=4.3e-09  Score=64.97  Aligned_cols=85  Identities=22%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  ++....       .+............+...   .....|.|.
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   76 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVL-------LIYGASNRYTGVPDRFTGSGSATDFTLTIS   76 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEE-------EEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEE-------EEEecccccCCccceEEeeccCCeeecEEH
Confidence            45678889999999999999987655557999973  221110       000000000011111111   123469999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        77 ~l-~~~DSa~YyCa~~~~   93 (107)
T d1kcvl1          77 SV-QADDDADYYCGQSYS   93 (107)
T ss_dssp             SC-CGGGCEEEEEEECSS
T ss_pred             hh-eecCCceEEEEecCC
Confidence            99 999999999986543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.99  E-value=4.2e-09  Score=64.89  Aligned_cols=86  Identities=20%  Similarity=0.251  Sum_probs=53.6

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i   78 (258)
                      ++.+.|..+.+.+|++|+|.|.........+.|||.  |+....      +.. ...........+....   .+..|.|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~------l~~-~~~~~~~~~~~~~~~~~~~~~~~L~I   75 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQL------LIY-DASSLESGVPSRFSGSGSGTEFTLTI   75 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE------EEE-TTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceE------EEe-ecccccCCCCcceEEeccCCEEEEEe
Confidence            456788999999999999999987555568999983  221110      000 0001111111111111   2346999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.....
T Consensus        76 ~~l-~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          76 STL-RPEDFATYYCQQLHF   93 (107)
T ss_dssp             SSC-CGGGCSEEEEEECSB
T ss_pred             ccc-eeCcCceEEEEECcC
Confidence            999 999999999976543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.99  E-value=6.1e-09  Score=64.02  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.||+.  ++....       .+............+...   .....|.|.
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~-------l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~   75 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKL-------LIYKASTLKTGVPSRFSGSGSGTEFTLTIS   75 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEE-------EEETTTEECTTSCTTEEEEEETTEEEEEEE
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEE-------EEEccccCCCCcCCceeeeccCCEEEEEEc
Confidence            35778899999999999999887655557999984  221110       000000011111111111   122359999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        76 ~~-~~~Dsa~YyCa~~~~   92 (106)
T d1op3k1          76 GL-QFDDFATYHCQHYAG   92 (106)
T ss_dssp             SC-CGGGCSEEEEEEECS
T ss_pred             cc-cccCCCcEeeeeCCC
Confidence            99 999999999986643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.4e-10  Score=72.17  Aligned_cols=100  Identities=15%  Similarity=0.116  Sum_probs=56.9

Q ss_pred             eeceeeeecCCCceEEEEEEeec---CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLI   78 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i   78 (258)
                      ..|..+.+.+|++|+|.|.....   ....+.|+|....-..    .... .........+..+..+.     .+.+|.|
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~----~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   78 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGC----ITLI-SSEGYVSSKYAGRANLTNFPENGTFVVNI   78 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----C----EEEE-ESSSCBCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCc----EEEE-ECcccccceecCCccEeeeCCCCEEEEEE
Confidence            36678889999999999986432   2236789984211100    0000 00001111111222121     1246999


Q ss_pred             eecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA  113 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~  113 (258)
                      .++ +.+|+|.|.|.+........ ..+.|.|...
T Consensus        79 ~~l-~~~DsG~Y~C~v~~~~~~~~-~~v~L~V~~~  111 (116)
T d1xeda_          79 AQL-SQDDSGRYKCGLGINSRGLS-FDVSLEVLEH  111 (116)
T ss_dssp             CSC-CGGGCEEEEEEESCGGGCCE-EEEEEEEECC
T ss_pred             hhh-CcCCCEEEEEEEEcCCCCce-EeEEEEEECC
Confidence            999 99999999999875543333 5577777654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.6e-09  Score=68.53  Aligned_cols=106  Identities=16%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec----CCCeEEEeeCCEeCcCCccccceecccc-eeeccccccceee-----eeCC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN----PTPHISWKLDGYPLAGDRHENKNRIGEA-RVQQLPLNRRQKV-----FPNG   74 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~   74 (258)
                      +...+.++.+..|++|+|.|.....    ....+.|++....-...........+.. ......+..|..+     ..+.
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            3567788899999999999987532    2347999873210000000000000000 0011122223222     2346


Q ss_pred             cEEEeecccCCCceEEEEEEEeCCcce-eeceEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVT  111 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~  111 (258)
                      +|.|.++ +.+|+|.|.|.+.+..+.. ....+.|.|.
T Consensus        82 sL~I~~v-~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNL-DYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSC-CGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCC-ChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            7999999 9999999999998765322 2245666664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.1e-09  Score=67.61  Aligned_cols=78  Identities=22%  Similarity=0.373  Sum_probs=56.6

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCccc-------------------CCCcceEEecCCeEEEEecccCCCCcEEEE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQL-------------------PLNRRQKVFPNGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~-------------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C  183 (258)
                      .+.+|++|.|.|.........+.|+|.....                   ....+..+..+++|.|.+++. +|+|.|+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~-~D~G~Y~c   88 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM-KDMGVYTL   88 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCG-GGCEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCc-hhCEEEEE
Confidence            4669999999997433335689999854321                   123466667788999999998 99999999


Q ss_pred             EEEeCCCCCccceEEEEe
Q psy14532        184 TATNKQGRSSSQNVHISV  201 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~l~v  201 (258)
                      .+.+..+...+..+.|.|
T Consensus        89 ~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          89 DMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEETTEEECCCCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            998776434455566655

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.9e-10  Score=67.68  Aligned_cols=91  Identities=12%  Similarity=0.087  Sum_probs=58.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...|.. .|..|++|+|.|... .+...+.|+|++.............               .......+.|.++
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~---------------~~~~~a~F~l~~v   69 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKF---------------WNETDPEFVIDHM   69 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC-------------------CCCEEEECSC
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccC---------------CCCceEEEEecCC
Confidence            5777777754 578999999999765 3456899998753211110000000               0012346889999


Q ss_pred             ccCCCceEEEEEEEeCCc-ceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQG-RSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v  110 (258)
                       +..|+|.|+|...+... ...+..+.|.|
T Consensus        70 -t~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          70 -DANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             -CGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             -CHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence             99999999999887654 23346666655

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.97  E-value=1.3e-09  Score=68.47  Aligned_cols=89  Identities=17%  Similarity=0.172  Sum_probs=52.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCC-----EeCcCCccccceecccceeecccccc-cee-----eee
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG-----YPLAGDRHENKNRIGEARVQQLPLNR-RQK-----VFP   72 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~   72 (258)
                      +++.|..+.+.+|++|+|.|.+.+. ....+.|||..     +.+...   ..............+.. +..     ...
T Consensus         1 v~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   77 (115)
T d2atpb1           1 LIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFL---ASWSSSKGVLYGESVDKKRNIILESSDSR   77 (115)
T ss_dssp             CEEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEE---EEEETTTEEEECGGGTTTCCEEEESTTSS
T ss_pred             CEeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEe---eEEecccCcEecCCcCCCCEEEEEeCCCC
Confidence            4577888999999999999998763 44579999742     111000   00000000000111111 111     112


Q ss_pred             CCcEEEeecccCCCceEEEEEEEeC
Q psy14532         73 NGTLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        73 ~~~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      ..+|.|.++ +.+|+|.|.|.+...
T Consensus        78 ~~~L~I~~~-~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          78 RPFLSIMNV-KPEDSDFYFCATVGS  101 (115)
T ss_dssp             SCEEEECSC-CGGGCEEEEEEEECS
T ss_pred             eEEEeeccc-CCCCCcEEEEeEcCC
Confidence            346999999 999999999987643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.97  E-value=4.8e-09  Score=64.50  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i   78 (258)
                      ++.+.|..+.+.+|++|+|.|.........+.||+.  |....       ..+............+....   .+.+|.|
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I   74 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPR-------LLIHYTSTLLPGIPSRFRGSGSGRDYSFSI   74 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEE-------EEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEE-------EEEEccccccCCCCcceEeecCCCEeeeEe
Confidence            356778889999999999999876555557999983  21110       00001111111111122111   2346999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.+...
T Consensus        75 ~~~-~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          75 SNL-EPEDIATYYCLQYYN   92 (106)
T ss_dssp             CSC-CGGGCSEEEEEECSS
T ss_pred             hhh-cccCCEeEEEEEeCC
Confidence            999 999999999987543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.97  E-value=6.6e-09  Score=64.31  Aligned_cols=84  Identities=20%  Similarity=0.250  Sum_probs=52.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|...+.....+.||+.  ++..       ...+............+....   .+..|.|.
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p-------~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~   78 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAP-------KLLIYEASNLQAGVPSRFSGSGSGTDYTFTIS   78 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCC-------EEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCC-------EEEEEecccCCCCCCCCEEeeCCCCEeEEEEe
Confidence            35678889999999999999987655567899983  2211       000100011111111111111   12369999


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      ++ +.+|+|.|.|.+..
T Consensus        79 ~l-~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          79 SL-QPEDIATYYCQQYQ   94 (109)
T ss_dssp             SC-CGGGCEEEEEEECS
T ss_pred             ec-eeCcCceEEEeecC
Confidence            99 99999999998654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.97  E-value=1.3e-09  Score=68.32  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=53.6

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccc-eeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~   80 (258)
                      .+.+.+..+.+.+|++|+|.|.........+.|||.  ++....-   ..............+... ........|.|.+
T Consensus         3 ~V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   79 (115)
T d1lp9e1           3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLL---LKSFTDNKRPEHQGFHATLHKSSSSFHLQKSS   79 (115)
T ss_dssp             EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEE---EESCSSTTCCCCSSCEECCBGGGTBCCEEESS
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeee---eeeeeccCCcceeeeeeeccCCCCeEEeeccc
Confidence            356677888899999999999987666678999983  2111100   000000000001111110 1111234699999


Q ss_pred             cccCCCceEEEEEEEeC
Q psy14532         81 VQKDHDRGVYWCTATNK   97 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~   97 (258)
                      + +.+|+|.|.|.+...
T Consensus        80 ~-~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          80 A-QLSDSALYYCALFLA   95 (115)
T ss_dssp             C-CGGGCEEEEEEEEEC
T ss_pred             c-ccccCccceEEEEcC
Confidence            9 999999999987654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.97  E-value=1.5e-09  Score=67.50  Aligned_cols=91  Identities=15%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecc--ccccceeeeeCCcEEE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQL--PLNRRQKVFPNGTLLI   78 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i   78 (258)
                      ..+.+.|..+.+.+|++|+|.|...+ ....+.|||.  |+....-.  .............  .+........+..|.|
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   78 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIH--YSYGVGNTEKGDIPDGYEASRPSQEQFSLIL   78 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEE--EESSTTCCEECSCCTTCEEEEEETTEEEEEE
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEE--EEeecCCcccCCCCCCEEEEeccCCEEEEEE
Confidence            35677888999999999999998764 3568999983  22110000  0000000011111  1111111112346889


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.....
T Consensus        79 ~~~-~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          79 ESA-TPSQTSVYFCASGGG   96 (110)
T ss_dssp             SSC-CGGGCEEEEEEEEET
T ss_pred             CCC-CHhhCEEEEEeeCCC
Confidence            999 999999999987653

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.6e-09  Score=65.83  Aligned_cols=80  Identities=21%  Similarity=0.406  Sum_probs=58.5

Q ss_pred             cceecCCcEEEEeeeC-c-ccCceEEEEeCCcccC----------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        122 VSAIAGEPLYLGCPVA-G-YPIESITWQKGVQQLP----------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~-~-~~~~~i~W~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +....|++|+|.|... . .....|.|++++..+.          ...+.....+++|.|.+++. +|+|.|+|.+.+..
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~-~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-DDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCG-GGCEEEEEEEEETT
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCH-HHCEEEEEEEEeCC
Confidence            4456799999999642 2 2234799998765442          23345566788999999998 99999999999987


Q ss_pred             CCC-ccceEEEEee
Q psy14532        190 GRS-SSQNVHISVT  202 (258)
Q Consensus       190 ~~~-~~~~~~l~v~  202 (258)
                      +.. ....+.|.|.
T Consensus        84 g~~~~~~~~~L~V~   97 (98)
T d1hnga1          84 GTRILNKALDLRIL   97 (98)
T ss_dssp             CCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEE
Confidence            753 2566677764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.96  E-value=8.7e-09  Score=63.44  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.||+.  +....       ..+............+.   ....+.+|.|.
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~-------~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~   76 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPK-------TLIYRANRLVDGVPSRFSGSGSGQDYSLTIS   76 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCE-------EEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeE-------EEEEeccccccCcCCceeecccCCEEEcccc
Confidence            45778889999999999999877655567899973  21110       00000000111111111   11123469999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.....
T Consensus        77 ~~-~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          77 SL-EYEDMGIYYCLQYDE   93 (107)
T ss_dssp             SC-CGGGCEEEEEEECSS
T ss_pred             cc-CCcCCEEEEeeeccC
Confidence            99 999999999976543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=1.1e-08  Score=62.93  Aligned_cols=81  Identities=22%  Similarity=0.310  Sum_probs=48.7

Q ss_pred             eceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEEeecc
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIENVQ   82 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~   82 (258)
                      .|..+.+.+|++|+|.|...+.....+.|||.  +.....       .+............+....   .+..|.|.++ 
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~-------l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~-   77 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKL-------LIYKASNLASGVPARFSGSGSGTDFTLTIDPV-   77 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEE-------EEETTTEECTTCCTTEEEEEETTEEEEEESSC-
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEE-------EEEecccccCCcCCceeeecCCCEEEeEECCc-
Confidence            34578899999999999987655567999973  211110       0000000111111111111   2246999999 


Q ss_pred             cCCCceEEEEEEEe
Q psy14532         83 KDHDRGVYWCTATN   96 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~   96 (258)
                      +.+|+|.|.|....
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          78 EADDTAIYFCQQSW   91 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ChhhCCCccccccc
Confidence            99999999996543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.93  E-value=8.3e-09  Score=63.49  Aligned_cols=84  Identities=24%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  ++....-       .............+...   ..+..|.|.
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l-------~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   76 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTL-------IYSASYRYSGVPDRFTGSGSGTDFTLTIN   76 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEE-------EETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEE-------EEeccccccccCCCeeecCCCCeeeeeec
Confidence            45677888899999999999876554557999973  2211100       00000011111111111   123469999


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      ++ +.+|+|.|.|.+..
T Consensus        77 ~~-~~~DsA~YyCa~~~   92 (107)
T d1mexl1          77 NV-QSEDLAEYFCQQYN   92 (107)
T ss_dssp             SC-CGGGCSEEEEEECS
T ss_pred             hh-heecceeEEEeECC
Confidence            99 99999999997654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.91  E-value=5.1e-09  Score=64.15  Aligned_cols=84  Identities=20%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~   79 (258)
                      +.++ ..+.+.+|++|+|.|.........+.|||.  |.....      +... ..........+...   .....|.|.
T Consensus         2 ltQp-~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~   73 (103)
T d8faba1           2 LTQP-PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVM------VIYK-DTQRPSGIPQRFSSSTSGTTVTLTIS   73 (103)
T ss_dssp             BBCC-SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEE------EEBT-TTBCCTTSCTTEEEEEETTEEEEEET
T ss_pred             CCCC-CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEE------Eeee-ecccccccCCcEEECCCCCccCceEc
Confidence            4454 478899999999999876544557899983  221110      0000 00000111111111   112468899


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        74 ~l-~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          74 GV-QAEDEADYYCQAWDN   90 (103)
T ss_dssp             TC-CGGGCEEEEEEEEET
T ss_pred             Cc-chhHCceEEeeecCC
Confidence            99 999999999976643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.91  E-value=9.5e-10  Score=68.55  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccc-eeeeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~   81 (258)
                      +.+.|..+.+.+|++|+|.|.........+.||+.  +.....-   .................. .......+|.|.++
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   78 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALL---ISILSVSDKKEDGRFTIFFNKREKKLSLHIADS   78 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEE---EEEETTCSEEEETTEEEEEETGGGEEEEEESSC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeee---eeeccccccccccceeEEECCCCCeeEeEeccC
Confidence            45667788899999999999887654457999984  2211100   000000000000000000 00011246999999


Q ss_pred             ccCCCceEEEEEEEeC
Q psy14532         82 QKDHDRGVYWCTATNK   97 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~   97 (258)
                       +.+|+|.|.|.+...
T Consensus        79 -~~~Dsa~YyCa~~~~   93 (110)
T d1u3ha1          79 -QPGDSATYFCAASAN   93 (110)
T ss_dssp             -CTTSCSEEEECCEES
T ss_pred             -CCCCceeEeeeecCC
Confidence             999999999987643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.90  E-value=3.1e-09  Score=66.84  Aligned_cols=90  Identities=17%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecc-cceeeccccccceeeee----CCcE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFP----NGTL   76 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l   76 (258)
                      .+.+.|..+.+.+|++|+|.|...+.....+.|||.  ++.+..-   ...... ...........+.....    ...|
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L   79 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLM---ATSHQGFNAIYEQGVVKDKFLINHASPTLSTL   79 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEE---EEEETTSCCEECTTCCTTTEEEEECSSSEEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceee---eeccccccceeccccccccceeeccccccccc
Confidence            356778888999999999999987665678999983  2211100   000000 00111111112221111    2358


Q ss_pred             EEeecccCCCceEEEEEEEeC
Q psy14532         77 LIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .|.++ +.+|+|.|.|.+...
T Consensus        80 ~i~~~-~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          80 TVTSA-HPEDSGFYVCSALAG   99 (118)
T ss_dssp             EECSC-CGGGCEEEEEEEECS
T ss_pred             ccccc-ccccCceEEEEEecC
Confidence            99999 999999999988654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.5e-09  Score=65.46  Aligned_cols=67  Identities=18%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccCC------------CcceEE-ecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL------------NRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~------------~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +....|++|+|.|... .|.+.|.|++++..+..            ..+..+ ..+++|.|.+++. +|+|.|+|.+.+.
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~-~DsG~Y~c~~~n~   82 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS-SDEDEYEMESPNI   82 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCG-GGCEEEEEECTTC
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecCh-hhCEEEEEEEECC
Confidence            4677899999999865 47789999998755421            111111 2356899999998 9999999999876


Q ss_pred             CC
Q psy14532        189 QG  190 (258)
Q Consensus       189 ~~  190 (258)
                      .+
T Consensus        83 ~~   84 (93)
T d1ccza1          83 TD   84 (93)
T ss_dssp             CS
T ss_pred             Cc
Confidence            44

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.9e-08  Score=61.88  Aligned_cols=87  Identities=15%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTL   76 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l   76 (258)
                      +.+.|..+.+.+|++|+|.|...+. ....+.|||.  ++....     ..... ..........+.....     ..+|
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~-----l~~~~-~~~~~~~~~~rf~~~~~~~~~~~~L   75 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEK-----QAAFS-NGLSQPVQDARFQIIQLPNRHDFHM   75 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEE-----EEEEE-TTEEEESSCTTEEEEECTTSSEEEE
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCee-----eEEee-eccccccccCcceEEEeCCCCEEEE
Confidence            5678899999999999999998653 3457899983  221100     00000 0011111222222211     2358


Q ss_pred             EEeecccCCCceEEEEEEEeCC
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      .|.++ +.+|+|.|.|.+....
T Consensus        76 ~I~~~-~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          76 NILDT-RRNDSGIYLCGAISLH   96 (114)
T ss_dssp             EESSC-CGGGCEEEEEEEECSS
T ss_pred             EECcc-CcCCCeEEEEEEEeCC
Confidence            99999 9999999999887543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.88  E-value=3.6e-09  Score=65.88  Aligned_cols=89  Identities=17%  Similarity=0.072  Sum_probs=52.7

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccc-eeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~   80 (258)
                      ++.+.|..+.+.+|++|+|.|.........+.||+.  |+....-   .............++... .......+|.|.+
T Consensus         2 ~v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   78 (111)
T d1bd2d1           2 QVKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFL---ISISSIKDKNADGRFTVFLNKSAKHLSLHIVP   78 (111)
T ss_dssp             CEECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEE---EEEETTCSEEEETTEEEEEETTTTEEEEEESS
T ss_pred             ceEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceee---eeeeceeccccCCcceEEEEccCCEEEEEECC
Confidence            466778888899999999999877655567899983  2211100   000000000000011000 0001234699999


Q ss_pred             cccCCCceEEEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATN   96 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~   96 (258)
                      + +.+|+|.|.|.+..
T Consensus        79 ~-~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          79 S-QPGDSAVYFCAAME   93 (111)
T ss_dssp             C-CGGGCEEEEEEEES
T ss_pred             C-cccccEEEEeeccC
Confidence            9 99999999998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.86  E-value=4.3e-09  Score=65.95  Aligned_cols=88  Identities=14%  Similarity=0.153  Sum_probs=53.2

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEe---CcCCccccceecccceeeccccccc-eeeeeCCcEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYP---LAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLL   77 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~   77 (258)
                      .+.+.+..+.+.+|++|+|.|.........+.|||.  ++.   +...........     ....+... ........|.
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~   76 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVK-----GINGFEAEFKKSETSFHLT   76 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEE-----CGGGCEEECBGGGTBCCEE
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccc-----cCCCCEEEECCCCCEEEEe
Confidence            456778889999999999999987655567999983  221   110000000000     00001000 0011133699


Q ss_pred             EeecccCCCceEEEEEEEeC
Q psy14532         78 IENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.++ +.+|+|.|.|.+...
T Consensus        77 I~~~-~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          77 KPSA-HMSDAAEYFCAVSES   95 (115)
T ss_dssp             ESSC-CGGGCEEEEEEEESS
T ss_pred             eccc-cccCCccceeeecCC
Confidence            9999 999999999998754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.86  E-value=2e-08  Score=62.22  Aligned_cols=85  Identities=22%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec----CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN----PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGT   75 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   75 (258)
                      +.+.|..+.+.+|++|+|.|.....    ....+.|||.  |+...       ..+............+....   .+.+
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~-------~liy~~~~~~~~~~~~~~~~~~~~~~~   76 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPK-------LLIYRASNLESGIPVRFSGTGSRTDFT   76 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCE-------EEEETTTEECTTSCTTEEEECSSSEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCE-------EEEEeeccccCCCCCcEEEecCCCEEE
Confidence            4567888999999999999987432    2335999983  32211       00100111111111122222   2346


Q ss_pred             EEEeecccCCCceEEEEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.|.++ +.+|+|.|.|.+...
T Consensus        77 L~I~~~-~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          77 LIIDPV-EADDVATYYCQQTNE   97 (111)
T ss_dssp             EEESSC-CGGGCEEEEEEECSS
T ss_pred             EEEccc-ccccCccEEEeecCC
Confidence            999999 999999999987643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.86  E-value=2.3e-09  Score=67.30  Aligned_cols=90  Identities=20%  Similarity=0.192  Sum_probs=53.2

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee-----eCCc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGT   75 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   75 (258)
                      ++.+.+..+.+.+|++|+|.|..... ....+.|||.  +.....-    .+..............|....     ...+
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l----~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~   77 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFV----FYGDDSRSEGADFTQGRFSVKHILTQKAFH   77 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEE----EEECSSCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEe----eecccccccccCccceEEEEEecCceeEEe
Confidence            35677888899999999999987543 4568999972  2211100    000000011111111121111     1236


Q ss_pred             EEEeecccCCCceEEEEEEEeCC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      |.|.++ +.+|+|.|.|.+....
T Consensus        78 L~I~~~-~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          78 LVISPV-RTEDSATYYCAFTLPP   99 (116)
T ss_dssp             EEESSC-CGGGCEEEEEEEECTT
T ss_pred             eeecCc-cccccccceeeEecCC
Confidence            899999 9999999999877543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.86  E-value=3.1e-08  Score=61.29  Aligned_cols=85  Identities=20%  Similarity=0.278  Sum_probs=50.8

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec----CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCc
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN----PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGT   75 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   75 (258)
                      +.+.|..+.+.+|++|+|.|.....    ....+.||+.  ++....       .+............+...   ..+..
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~-------li~~~~~~~~g~~~rfs~~~~~~~~~   76 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRR-------LIYLVSNLESGVPARFSGSGSGTDFT   76 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEE-------EEETTTEECTTCCTTEEEEEETTEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEE-------EEEccCccCCCcCCcEEEecCCCchh
Confidence            4577888999999999999987532    1235899984  221110       000001111111111111   12346


Q ss_pred             EEEeecccCCCceEEEEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.|.++ +.+|+|.|.|.+...
T Consensus        77 L~I~~~-~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          77 LNIHPV-EEEDAATYYCSHIRE   97 (111)
T ss_dssp             EEESSC-CGGGCEEEEEEECSS
T ss_pred             cccccc-cccCCceEEEEECCC
Confidence            999999 999999999976543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.84  E-value=1.7e-08  Score=62.29  Aligned_cols=84  Identities=19%  Similarity=0.233  Sum_probs=51.9

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.||+.  ++....       .+............+.   .......|.|.
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~-------li~~~~~~~~~~~~~fs~~~~~~~~~L~I~   76 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQF-------LVYNAKTLGEGVPSRFSGSGSGTQFSLKIN   76 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE-------EEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeE-------EEEeeccccCCcCCCEEEeccCCEEEEEEc
Confidence            45778899999999999999987554557999983  221100       0000000111111111   11123469999


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      ++ +.+|+|.|.|.+..
T Consensus        77 ~~-~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          77 SL-LPEDFGSYYCQHHY   92 (109)
T ss_dssp             SC-CGGGCEEEEEEECS
T ss_pred             cc-cccCCeeEEEeeeC
Confidence            99 99999999998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.84  E-value=1.8e-08  Score=62.24  Aligned_cols=84  Identities=24%  Similarity=0.298  Sum_probs=50.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i   78 (258)
                      +.+.|..+.+.+|++|+|.|..... ....+.|||.  ++....       .+............+....   ....|.|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~-------l~~~~~~~~~~~~~~~s~~~~~~~~~L~I   76 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRL-------LIYGASSRPSGVADRFSGSGSGTDFTLTI   76 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEE-------EEBTTTBCCTTSCTTEEEEEETTEEEEEE
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEE-------EEeeecccccCCccceeeecCCCEEEEEe
Confidence            3467888999999999999987543 3346899984  221110       0000000111111111111   1235999


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ +.+|+|.|.|.+..
T Consensus        77 ~~~-~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          77 SRL-EPEDFAVYYCQQYG   93 (108)
T ss_dssp             SSC-CGGGCSEEEEEECS
T ss_pred             hHh-eecccEEEeeecCC
Confidence            999 99999999998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.84  E-value=5.1e-09  Score=65.58  Aligned_cols=89  Identities=19%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee---eeeCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK---VFPNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i   78 (258)
                      .+.+.+..+.+.+|++|+|.|.........+.|||.  ++....-   ..+ .............+..   ...+.+|.|
T Consensus         2 sV~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I   77 (115)
T d1i9ea_           2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLL---LKY-YSGDPVVQGVNGFEAEFSKSNSSFHLRK   77 (115)
T ss_dssp             EEECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEE---EEE-CSSCSEEECGGGCEEECBTTTTBCCEEE
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeee---eee-ccceeccccCcceeEEEeCcCCEEEEec
Confidence            456777789999999999999987655668899972  2211100   000 0000000000001111   112356999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.+...
T Consensus        78 ~~~-~~~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          78 ASV-HWSDSAVYFCAVSGF   95 (115)
T ss_dssp             SSC-CGGGCEEEEEEEEET
T ss_pred             ccc-cccccceecccccCC
Confidence            999 999999999987643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.83  E-value=4.2e-09  Score=64.87  Aligned_cols=85  Identities=14%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcC-CccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAG-DRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +.+.|..+.+.+|++|+|.|.........+.||+.  |+.... ........    ......+.. .....+.+|.|.++
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~----~~~~~~f~~-~~~~~~~~L~I~~~   78 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLH----AGVPSRFSG-SGSGTDYSLTISNL   78 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEEC----TTCCTTCCC-EEETTEEEEECSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccC----CCcCCCEEE-EccCCEEEEEEeEe
Confidence            45778889999999999999876655567999973  221110 00000000    001111111 11112357999999


Q ss_pred             ccCCCceEEEEEEE
Q psy14532         82 QKDHDRGVYWCTAT   95 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~   95 (258)
                       +.+|+|.|.|...
T Consensus        79 -~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          79 -EPEDIATYFCQHH   91 (107)
T ss_dssp             -CSCCCSEEEEEEC
T ss_pred             -eecCCCcEEeeeC
Confidence             9999999999754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.83  E-value=1.1e-08  Score=63.63  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=51.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee----eCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i   78 (258)
                      +.+.|..+.+.+|++|+|.|.... ....+.|||.  |+....-   .................+....    ...+|.|
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l---~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i   77 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFL---LHFVKESKQDESGMPNNRFLAERTGGTYSTLKV   77 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEE---EEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceec---ceecccCcccccCCCCccEEEEcCCCCEEEEEE
Confidence            456788899999999999997543 3458999983  3211100   0011111111111111222111    1246999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.+...
T Consensus        78 ~~~-~~~Dsa~YyCa~~~~   95 (111)
T d2esve1          78 QPA-ELEDSGVYFCASSQD   95 (111)
T ss_dssp             SSC-CGGGCEEEEEEEESS
T ss_pred             CCc-ccCCCceEEEeeeCC
Confidence            999 999999999986543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.6e-09  Score=65.11  Aligned_cols=82  Identities=12%  Similarity=0.295  Sum_probs=46.8

Q ss_pred             eeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee-----eCCcEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIEN   80 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~   80 (258)
                      ..+.+.+|++|+|.|.....  ....+.|+|.  +.....-       +.........+..+..+.     ...+|.|.+
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l-------~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   76 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRL-------VTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTD   76 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEE-------EEECSTTCCBCSTTEEEEEETTTTEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEe-------eeccCccccceeeeEeeeeeCCCCEEEEEEhh
Confidence            44678899999999986543  2336789983  2111000       000000011111121111     123689999


Q ss_pred             cccCCCceEEEEEEEeCCc
Q psy14532         81 VQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~   99 (258)
                      + +.+|+|.|.|.+.....
T Consensus        77 l-~~~DsG~Y~C~v~~~~~   94 (108)
T d1hkfa_          77 L-REEDSGHYWCRIYRPSD   94 (108)
T ss_dssp             C-CGGGCEEEEEEEECTTT
T ss_pred             h-CCCCCEEEEEEEecCCC
Confidence            9 99999999999886543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=9.4e-09  Score=61.75  Aligned_cols=87  Identities=21%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...|. ..+..|++|+|.|.........+.|+|+|.......     ...               ...+.+.|.++
T Consensus         5 kP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~-----~~~---------------~~~a~F~l~~v   63 (96)
T d1ucta2           5 KPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH-----QSG---------------EHPANFSLGPV   63 (96)
T ss_dssp             CCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE-----EEC---------------SSSEEEECCSC
T ss_pred             CCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE-----cCC---------------CcccEEEEecc
Confidence            577777765 468999999999986433445789999875332210     000               01346788899


Q ss_pred             ccCCCceEEEEEEEeCCc----ceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQG----RSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v  110 (258)
                       +..|+|.|+|.......    ...+..+.|.|
T Consensus        64 -~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          64 -DLNVSGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             -CGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             -ccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence             99999999998875432    22235555554

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.8e-08  Score=62.85  Aligned_cols=92  Identities=17%  Similarity=0.309  Sum_probs=52.9

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCC--EeCcCC---ccccceecccceeeccccccceeeeeCCcEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG--YPLAGD---RHENKNRIGEARVQQLPLNRRQKVFPNGTLL   77 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (258)
                      ++.+.|.++.+.+|++|+|.|..... ....+.|||..  .....-   ................++... ....+.+|.
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~-~~~~~~~L~   80 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGK-RLGDTFVLT   80 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEE-EETTEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEE-CCCCChhcE
Confidence            46778899999999999999998654 34468999832  111100   000000000000001111111 111124699


Q ss_pred             EeecccCCCceEEEEEEEeC
Q psy14532         78 IENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.++ +.+|+|.|.|.+...
T Consensus        81 I~~l-~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          81 LSDF-RRENEGYYFCSALSN   99 (114)
T ss_dssp             ESSC-CGGGCEEEEEEEEET
T ss_pred             EccC-CCCCCEEEeEeEcCC
Confidence            9999 999999999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=6e-09  Score=64.20  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=51.9

Q ss_pred             eeeecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceecccceeeccccccceeee--eCCcEEEeecccC
Q psy14532         11 QQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF--PNGTLLIENVQKD   84 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~   84 (258)
                      .+.+..|++|+|.|......    ...+.|.+++..+..... ...      .....+..+....  .+.+|.|.++ +.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~-~~~------~~~~~~~~r~~~~~~g~~sL~I~~v-~~   74 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMS-GDM------NIWPEYKNRTIFDITNNLSIVILAL-RP   74 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEET-TEE------EECHHHHTTEEEESTTTTEEEECSC-CG
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEe-ccc------eeecceeeeeeeccCCcEEEEECcC-Ch
Confidence            46788999999999765321    135788887765432211 111      1111222333332  2558999999 99


Q ss_pred             CCceEEEEEEEeCCcce
Q psy14532         85 HDRGVYWCTATNKQGRS  101 (258)
Q Consensus        85 ~d~G~Y~C~~~~~~~~~  101 (258)
                      +|+|.|.|.+....+..
T Consensus        75 ~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          75 SDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             GGCEEEEEEEEECCTTS
T ss_pred             HHCeEEEEEEEeCCCCC
Confidence            99999999998754433

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.80  E-value=6.3e-08  Score=60.06  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-----CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNG   74 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   74 (258)
                      +.+.|..+.+.+|++|+|.|...+.     ....+.||+.  |+...       ..+............+...   ..+.
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~-------~l~~~~~~~~~~~~~~fs~~~~~~~~   77 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQ-------LLIYKVSNRFSGVPDRFSGSGSGTDF   77 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCE-------EEEETTTEECTTCCTTEEEEECSSEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccE-------EEEEecCCCccccCCCeeeeccCCcc
Confidence            4577888999999999999997542     2246999973  22111       0111111111111212111   1234


Q ss_pred             cEEEeecccCCCceEEEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      +|.|.++ +.+|+|.|.|....
T Consensus        78 ~L~I~~~-~~~DsavYyCa~~~   98 (113)
T d1n4xl_          78 TLKISRV-EAEDLGIYYCFQGS   98 (113)
T ss_dssp             EEEESSC-CGGGCEEEEEEECS
T ss_pred             cCccCCC-CcccCEEEEEEECC
Confidence            7999999 99999999996543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=4.1e-08  Score=60.50  Aligned_cols=85  Identities=19%  Similarity=0.322  Sum_probs=49.8

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCC---CeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCc
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGT   75 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   75 (258)
                      .+.+++ .+.+.+|++|+|.|...+...   ..+.|||.  |+....-       +.........+..+.   ....+..
T Consensus         3 ~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l-------~y~~~~~~~~~~~rf~~s~~~~~~~   74 (110)
T d1oaql_           3 VVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGL-------IGGTNNRAPGVPARFSGSLIGNKAA   74 (110)
T ss_dssp             CEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEE-------EETTTEECTTSCTTEEEEEETTEEE
T ss_pred             CEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeee-------eeeeceeccccceeeeeccccccee
Confidence            445544 688999999999999864322   24899972  3221100       000001111111111   1122346


Q ss_pred             EEEeecccCCCceEEEEEEEeC
Q psy14532         76 LLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.|.++ +.+|+|.|.|.....
T Consensus        75 L~I~~~-~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          75 LTITGA-QTEDEAIYFCALWYS   95 (110)
T ss_dssp             EEEESC-CGGGCEEEEEEEEET
T ss_pred             eecCCC-CccccEeEEEEcccC
Confidence            999999 999999999987654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.79  E-value=9.2e-09  Score=64.07  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCc-CCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLA-GDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .+.+.|..+.+.+|++|+|.|...+.  ....+.|||.  +.... ......+....           +.......+|+|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~L~I   70 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVET-----------VNKGSKSFSLRI   70 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEE-----------EETTTTEEEEEE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccce-----------eECCCCceeeee
Confidence            35678889999999999999998753  3457999973  22110 00001111110           000011236999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.+...
T Consensus        71 ~~l-~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          71 SDL-RVEDSGTYKCQAFYS   88 (113)
T ss_dssp             CSC-CGGGCEEEEEEEEEE
T ss_pred             ccc-ccCCcceEeeeeecc
Confidence            999 999999999998643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=3e-08  Score=63.16  Aligned_cols=85  Identities=20%  Similarity=0.285  Sum_probs=56.6

Q ss_pred             CCcceecCCcEEEEeeeCcc---cCceEEEEeCCcccC-----------------CCcceEEec------CCeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGY---PIESITWQKGVQQLP-----------------LNRRQKVFP------NGTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~---~~~~i~W~~~~~~~~-----------------~~~~~~~~~------~~~l~i~~~~  173 (258)
                      ..+.+..|++++|.|.+...   ....+.|++.+....                 ...+..+..      +.+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            34778899999999987432   234689998543210                 011122211      2369999999


Q ss_pred             cCCCCcEEEEEEEeCCCCCccceEEEEeecCCc
Q psy14532        174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK  206 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  206 (258)
                      . +|+|.|.|.+.+..+ ..+..+.|.|..|+.
T Consensus        90 ~-~D~G~Y~C~v~~~~~-~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          90 F-SDEGGYTCFFRDHSY-QEEAAVELKVEDPFY  120 (126)
T ss_dssp             G-GGCEEEEEEEEETTE-EEEEEEEEEEECTTT
T ss_pred             h-hHCeEEEEEEEECCC-EEEEEEEEEEeCCCE
Confidence            8 999999999998755 345677888876543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.78  E-value=1.2e-08  Score=63.29  Aligned_cols=89  Identities=13%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee-eeeCCcEEEeec
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK-VFPNGTLLIENV   81 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~   81 (258)
                      +.+.+..+.+.+|++|+|.|.........+.|||.  |+....-   ..............+..... ......|.|.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l---~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~   79 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFL---FRASRDKEKGSSRGFEATYNKEATSFHLQKASV   79 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEE---EEECSTTCEEEETTEEEECBTTTTBCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEe---eeeeeecccCCCCceeeeecCCCCEEeeeecCc
Confidence            56778888999999999999876554557999983  2211100   00000001111111111100 011346899999


Q ss_pred             ccCCCceEEEEEEEeC
Q psy14532         82 QKDHDRGVYWCTATNK   97 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~   97 (258)
                       ..+|+|.|.|.+...
T Consensus        80 -~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          80 -QESDSAVYYCALSGG   94 (110)
T ss_dssp             -CGGGCEEEEEEEEET
T ss_pred             -CcCCCcccceeecCC
Confidence             999999999987654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.1e-08  Score=62.62  Aligned_cols=89  Identities=20%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             eeceeeeecCCCceEEEEEEeec-------CCCeEEEeeCCEeCcCCccccceecccceeeccccccceee-----eeCC
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN-------PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNG   74 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   74 (258)
                      ..+.++.+.+|++|+|.|.....       ....+.|++....-....  ..............+.+|..+     ..+.
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   83 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKA--PVATNNPAWAVQEETRDRFHLLGDPQTKNC   83 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CC--CSEESCTTSCCCTTTTTTEEECSCGGGTBC
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEE--EEeeCCCCceeccccceEEEEeeeCcCCEE
Confidence            34677899999999999987421       123578988532211110  000001111111122222222     2356


Q ss_pred             cEEEeecccCCCceEEEEEEEeCC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      +|.|.++ +.+|+|.|.|.+....
T Consensus        84 sL~I~~v-~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          84 TLSIRDA-RMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CEEECSC-CGGGCEEEEEEEEETT
T ss_pred             EEEECCC-ChHHCEEEEEEEEeCC
Confidence            7999999 9999999999997654

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.77  E-value=1.8e-08  Score=62.73  Aligned_cols=87  Identities=16%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee----eeCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV----FPNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i   78 (258)
                      +.+.|..+.+.+|++|+|.|.... ....+.|||.  ++....-   .................+...    ....+|.|
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   77 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFL---TYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKI   77 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEE---EEEETTEEEECTTCCSTTEEEECTTSSCEEEEE
T ss_pred             eEECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEe---eeeccCcccccCCCCCCceeeECCcCCEEEEEE
Confidence            456788888999999999998543 3458999983  2211100   000001000111111111111    11246999


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ +.+|+|.|.|.+..
T Consensus        78 ~~~-~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          78 QRT-QQEDSAVYLCASSL   94 (112)
T ss_dssp             SSC-CGGGCEEEEEEEES
T ss_pred             CCC-CcCCCEEEEEeeeC
Confidence            999 99999999998764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.77  E-value=8.4e-08  Score=59.63  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeC-cCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL-AGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~   80 (258)
                      ++.+.|..+.+.+|++|+|.|.... ....+.|||.  +... ..................  +..  ......+|.|.+
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~--~~~--~~~~~~~L~I~~   77 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSA--FDS--ERARYSTLHIRD   77 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEE--CCS--SSSSEEEEEECS
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceE--Eee--cCCceeEEEECC
Confidence            4677888999999999999998764 3457999983  2111 000000000000000000  000  001123699999


Q ss_pred             cccCCCceEEEEEEEeCC
Q psy14532         81 VQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~   98 (258)
                      + +.+|+|.|.|.+....
T Consensus        78 ~-~~~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          78 A-QLEDSGTYFCAAEASS   94 (113)
T ss_dssp             C-CGGGCEEEEEEEECSS
T ss_pred             C-CHhHCEEEEEEecCCC
Confidence            9 9999999999877543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.77  E-value=8e-08  Score=59.53  Aligned_cols=83  Identities=23%  Similarity=0.285  Sum_probs=49.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-----CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNG   74 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   74 (258)
                      +.+.|..+.+.+|++|+|.|...+.     ....+.||+.  |+....       .+............+....   ...
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~-------liy~~~~~~~~~~~r~~~~~s~~~~   76 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQL-------LIYRMSNLASGVPDRFSGSGSGTAF   76 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEE-------EEETTTEECTTSCTTEEEEECSSEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEE-------EEEeCCcccCCCCCcEEeecCCCEE
Confidence            3466778889999999999987652     2346899973  322110       0111111111112121111   223


Q ss_pred             cEEEeecccCCCceEEEEEEE
Q psy14532         75 TLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.|.++ +.+|++.|.|...
T Consensus        77 ~L~Is~~-~~~DsAvYyCa~~   96 (112)
T d1mjul1          77 TLRISRV-EAEDVGVYYCLQH   96 (112)
T ss_dssp             EEEESSC-CGGGCEEEEEEEC
T ss_pred             EEEECCc-cccCCceEEEEeC
Confidence            5999999 9999999999543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.76  E-value=3.8e-08  Score=59.44  Aligned_cols=89  Identities=19%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.+...|. ..+..|++|+|.|.... +...+.|+|+|...........                 .......+.|..+
T Consensus         6 kPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~-----------------~~~~~~~f~~~~~   66 (99)
T d1nkra2           6 KPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGP-----------------KVNGTFQADFPLG   66 (99)
T ss_dssp             CCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEE-----------------EETTEEEEEEEEE
T ss_pred             CCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccc-----------------cCCccEEEEEecc
Confidence            577777775 46789999999997653 4568999998754322100000                 0001123567778


Q ss_pred             ccCCCceEEEEEEEeCCc----ceeeceEEEEE
Q psy14532         82 QKDHDRGVYWCTATNKQG----RSSSQNVHISV  110 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v  110 (258)
                       ...|+|.|+|.......    ...+..+.|.|
T Consensus        67 -~~~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          67 -PATHGGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             -ECCSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             -ccccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence             78899999998765432    22235555554

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-08  Score=61.47  Aligned_cols=87  Identities=10%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE----EecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK----VFPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      +|.+...+...+..|++|+|.|.... +...+.|++++..........    ......+.|.++.. .|+|.|.|...+.
T Consensus         7 kPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~-~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKSSPVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDA-NKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESSCSEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCG-GGCEEEEEEEEET
T ss_pred             CCEEEecCCCceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCH-HHCceEEEEEECC
Confidence            44555545556889999999998753 456888998775422111111    11334689999997 9999999999886


Q ss_pred             CC-CCccceEEEEe
Q psy14532        189 QG-RSSSQNVHISV  201 (258)
Q Consensus       189 ~~-~~~~~~~~l~v  201 (258)
                      .. +..+..+.|.|
T Consensus        85 ~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          85 HYRFRYSDTLELVV   98 (99)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CcccCCCCCEEEEe
Confidence            54 33466666665

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=1.5e-08  Score=63.24  Aligned_cols=103  Identities=17%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccc-eeeeeCCcEEEee
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIEN   80 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~   80 (258)
                      .+.+.|..+.+.+|++|+|.|...+. ...+.|||.  |+....-   ..............+..+ .......+|.|.+
T Consensus         2 ~l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   77 (115)
T d1ogad1           2 LLEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLL---VTVVTGGEVKKLKRLTFQFGDARKDSSLHITA   77 (115)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEE---EEECSTTCEEEETTEEEEECTTSSEEEEEESS
T ss_pred             ceEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeee---eeeeecccceeecccccccccccceeeeeecC
Confidence            45677888999999999999987643 457999983  2211100   000000000000111000 0011234699999


Q ss_pred             cccCCCceEEEEEEEeCCcc-eeeceEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATNKQGR-SSSQNVHISVT  111 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~  111 (258)
                      + +.+|+|.|.|.+....+. .......|+|.
T Consensus        78 ~-~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          78 A-QPGDTGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             C-CGGGCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             C-CccceeeEcccccCCCCCcEECCCEEEEEe
Confidence            9 999999999987644322 12234456665

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.76  E-value=1.2e-08  Score=63.72  Aligned_cols=90  Identities=12%  Similarity=0.115  Sum_probs=52.1

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLL   77 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~   77 (258)
                      ++.+.+..+.+.+|++|+|.|..... ....+.|||.  +.....-   ....... .........+....   .+.+|.
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~   77 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFL---IRRNSFD-EQNEISGRYSWNFQKSTSSFNFT   77 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEE---EEEETTS-CSEEEETTEEEEEETTTTEEEEE
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEe---eeEeeee-ecCCCCcceEEEEcCCCCEEEEe
Confidence            46677888899999999999986543 3446899983  2211100   0000000 00000001111111   123699


Q ss_pred             EeecccCCCceEEEEEEEeCC
Q psy14532         78 IENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      |.++ +.+|+|.|.|.+....
T Consensus        78 I~~~-~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          78 ITAS-QVVDSAVYFCALSGFY   97 (114)
T ss_dssp             ESSC-CGGGCEEEEEEEECSB
T ss_pred             eccc-ccccCCCceEeCCCCC
Confidence            9999 9999999999876544

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1e-08  Score=63.76  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=52.2

Q ss_pred             eeeecCCCceEEEEEEeecC---CCeEEE--eeCCE-eCcCCccccceecccceeeccccccce-eeeeCCcEEEeeccc
Q psy14532         11 QQTLQPGPPVSLKCIATGNP---TPHISW--KLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQ-KVFPNGTLLIENVQK   83 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~---~~~v~W--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~   83 (258)
                      .+.+..|++|+|.|.....+   ...+.|  .++.. .+.... .......   .....+..+. ....+.+|.|.++ +
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~---~~~~~~~~r~~~~~~~~sL~I~~v-~   77 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVY-LGKEKFD---SVHSKYMGRTSFDSDSWTLRLHNL-Q   77 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEE-TTEECCS---SBCTTTTTSEEEETTTTEEEECSC-C
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEe-CCceecc---cCCcceEEEEeccCCeEEEEECCC-C
Confidence            36688999999999876432   223444  44322 211110 0000000   1111233222 2345678999999 9


Q ss_pred             CCCceEEEEEEEeCCcce----eeceEEEEEe
Q psy14532         84 DHDRGVYWCTATNKQGRS----SSQNVHISVT  111 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~  111 (258)
                      .+|+|.|.|.+.......    ....+.|.|.
T Consensus        78 ~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          78 IKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             GGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             hhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            999999999997544322    2345555553

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=2.8e-08  Score=62.18  Aligned_cols=84  Identities=21%  Similarity=0.232  Sum_probs=51.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.........+.|||.  ++....       .+............+.   .......|.|.
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~-------l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~   76 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKL-------LIYNTNSLQTGIPSRFSGSGSGTDYTLTIS   76 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEE-------EEETTTEECTTCCTTEEEEEEBTEEEEEEC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEE-------EEEeeccccCceeeeecccCCCCEEEEEcc
Confidence            45778889999999999999876554457999984  221110       0000000111111111   11112469999


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      ++ +.+|+|.|.|....
T Consensus        77 ~~-~~~DsavYyCa~~~   92 (119)
T d1f3rb2          77 SL-QPEDVATYFCYQYN   92 (119)
T ss_dssp             SC-CGGGCSEEEEEEES
T ss_pred             cC-ccCCCeEEEeeccC
Confidence            99 99999999997654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.75  E-value=1.1e-08  Score=64.09  Aligned_cols=91  Identities=10%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             cceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee-eeeCCcEEEe
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK-VFPNGTLLIE   79 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~   79 (258)
                      ++.+.+..+.+.+|++|+|.|.... .....+.|||.  +.....-.  ..............+..... .....+|.|.
T Consensus         1 ~VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   78 (115)
T d1fo0a_           1 KVTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLI--RQDSYKKENATVGHYSLNFQKPKSSIGLIIT   78 (115)
T ss_dssp             CEECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEE--EEETTCCSCCEETTEEEEEEGGGTEEEEEEC
T ss_pred             CeEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEE--EEecceeecccCCceEEEEeccCCEEEEEEC
Confidence            3567788899999999999998754 33446899983  21110000  00000000000001100000 0112459999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.+...
T Consensus        79 ~~-~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          79 AT-QIEDSAVYFCAMRGD   95 (115)
T ss_dssp             SC-CGGGCEEEEEEEECC
T ss_pred             CC-CccccccccceeecC
Confidence            99 999999999988754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.75  E-value=8.4e-08  Score=59.33  Aligned_cols=84  Identities=21%  Similarity=0.291  Sum_probs=49.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec-----CCCeEEEeeC--CEeCcCCccccceecccceeecccccccee---eeeCC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK---VFPNG   74 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   74 (258)
                      +.+.|..+.+.+|++|+|.|...+.     ....+.||+.  |+....       .+............+..   ...+.
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~-------l~~~~~~~~~g~~~~fs~~~~~~~~   76 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKR-------LIYLGTKLDSGVPDRFTGSGSGTDF   76 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEE-------EEETTTEECTTCCTTEEEEEETTEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEE-------EEeccCcCCCCcCceEEeeCCCCEE
Confidence            3466888999999999999986532     2246899973  322110       00000011111111111   11234


Q ss_pred             cEEEeecccCCCceEEEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .|.|.++ +.+|+|.|.|...+
T Consensus        77 ~L~I~~~-~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          77 TLKISRV-EAEDLGVYYCWQGT   97 (112)
T ss_dssp             EEEESSC-CGGGCEEEEEEECS
T ss_pred             EEEECcc-ccCcCEeEEEEcCC
Confidence            6999999 99999999996543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.75  E-value=8.8e-09  Score=64.01  Aligned_cols=82  Identities=18%  Similarity=0.306  Sum_probs=48.6

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee-----eCCcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i   78 (258)
                      .|..+.+.+|++|+|.|...+..  ...+.|||.  ++.....       ..........+..+....     ....|.|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i   78 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITV-------IYEDNQRPSGVPDRFAGSIDRSSNSASLTI   78 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEE-------EBTTTBCCTTSCTTEEEEEETTTTEEEEEE
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEee-------eccccccCcccCCceeEeecCCCCcccccc
Confidence            36678999999999999986542  235999984  2211100       000000111111111111     1336899


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.....
T Consensus        79 ~~l-~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          79 SGL-KTEDEADYYCQSYDA   96 (111)
T ss_dssp             CSC-CGGGCEEEEEEEEET
T ss_pred             ccC-CcccCcEEEEeeccC
Confidence            999 999999999986643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.74  E-value=1.6e-08  Score=63.20  Aligned_cols=86  Identities=14%  Similarity=0.149  Sum_probs=50.3

Q ss_pred             eeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce----eeeeCCcEEEe
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ----KVFPNGTLLIE   79 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~   79 (258)
                      .+.|..+.+.+|++|+|.|... .....+.|||.  ++.+..-   ...... ..........+.    ......+|.|.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~   77 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLI---YYSQIV-NDFQKGDIAEGYSVSREKKESFPLTVT   77 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEE---EEESST-TCCEECSSCTTEEECCSSTTBCCEEEC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcce---eeeeee-eccccccCCCceEEEcccCCeEEEEEC
Confidence            4567788899999999999875 34568999983  2211100   000000 000011111111    11123469999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ ..+|+|.|.|.....
T Consensus        78 ~~-~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          78 SA-QKNPTAFYLCASSSR   94 (114)
T ss_dssp             SC-CSCCCEEEEEEEESS
T ss_pred             cC-CcCCceeEEEeeccC
Confidence            99 999999999977643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.74  E-value=1.8e-08  Score=62.40  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCc-CCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLA-GDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      ++.+.|..+.+.+|++|+|.|...+.  ....+.|||.  |+... ......+...        .....   ....+|.|
T Consensus         1 rV~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~--------~~~~~---~~~~~L~I   69 (112)
T d1sq2n_           1 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVE--------TVNSG---SKSFSLRI   69 (112)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEE--------EEETT---TTEEEEEE
T ss_pred             CCEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEee--------EEecC---CceeeeEe
Confidence            35678888999999999999987543  4468999983  22110 0000011110        00000   01236999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.+...
T Consensus        70 ~~l-~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          70 NDL-TVEDGGTYRCGLGVA   87 (112)
T ss_dssp             CSC-CGGGCEEEEEEECBT
T ss_pred             cCC-cCccCEEEeEEEecC
Confidence            999 999999999987654

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.72  E-value=1.3e-08  Score=63.42  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=52.4

Q ss_pred             CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce----eeeeCCcE
Q psy14532          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ----KVFPNGTL   76 (258)
Q Consensus         3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l   76 (258)
                      +.+.+.|..+.+.+|++|+|.|.... ....+.|||.  ++....-    ................+.    ......+|
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   76 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFL----IQHYEKVERDKGFLPSRFSVQQFDDYHSEM   76 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEE----EEEETTTEEEESSCCTTCCCEECTTSCEEE
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcce----eeeeecccccCCCcccceeeEcCCCCeEEE
Confidence            45778889999999999999998543 3457999984  2211100    000001111111111111    11123468


Q ss_pred             EEeecccCCCceEEEEEEEe
Q psy14532         77 LIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .|.++ +.+|+|.|.|.+..
T Consensus        77 ~I~~~-~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          77 NMSAL-ELEDSAMYFCASSL   95 (113)
T ss_dssp             ECCSC-CGGGCEEECEEEES
T ss_pred             Eeccc-CcCCceeEEEEeec
Confidence            89999 99999999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.71  E-value=1.2e-07  Score=57.88  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee---eeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK---VFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~   79 (258)
                      +.+.|..+.+.+|++|+|.|.... ....+.||+.  +....       ...............+..   ...+.+|.|.
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~   74 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPK-------RWIYDTSKLASGVPVRFSGSGSGTSYSLTIS   74 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCE-------EEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceE-------EEEecccccCCCcCceEEEecCCCEEEEEec
Confidence            457788899999999999998653 3446899984  21111       011011111111111111   1123469999


Q ss_pred             ecccCCCceEEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTAT   95 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~   95 (258)
                      ++ +.+|+|.|.|...
T Consensus        75 ~~-~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          75 SM-ETEDAATYYCQQW   89 (104)
T ss_dssp             SC-CGGGCEEEEEEEC
T ss_pred             cc-CcccCCeEEEEec
Confidence            99 9999999999754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.8e-08  Score=59.71  Aligned_cols=90  Identities=19%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...|. ..+..|++|+|.|... .+...+.++|+|...........                 .....+.+.|.++
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~-----------------~~~~~a~F~i~~v   64 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ-----------------ELVKKGQFPIPSI   64 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH-----------------HHHTTTEEEESSC
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC-----------------CCCCEEEEEEEec
Confidence            577777766 4578999999999864 34557888888753221100000                 0012457889999


Q ss_pred             ccCCCceEEEEEEEeCCc--ceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQG--RSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~  111 (258)
                       +..|+|.|+|.......  ...+..+.|.|.
T Consensus        65 -~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          65 -TWEHTGRYRCYYGSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             -CGGGCEEEEEEEEETTTEECCCCCCEEEEEE
T ss_pred             -CHHHCCeEEEEEeCCCCCccccCCCEEEEEe
Confidence             99999999998765432  222355555553

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.70  E-value=4.1e-08  Score=60.76  Aligned_cols=83  Identities=12%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             ceeeeecCCCceEEEEEEeec-CCCeEEEeeC--CEeCcCCccccceecccceeecccccc-ceeeeeCCcEEEeecccC
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNR-RQKVFPNGTLLIENVQKD   84 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~   84 (258)
                      |.++.+.+|++|+|.|..... ....+.|||.  +.....-    ...... ......... ........+|.|.++ +.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i----~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~-~~   78 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYI----IHGLKN-NETNEMASLIITEDRKSSTLILPHA-TL   78 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEE----EEESSS-CEECSSCEEEECTTCSEEEEEESSC-CG
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEe----eeeece-ecccccceeeecccCCeeeehhccc-cc
Confidence            456889999999999987543 3446899983  2211100    000000 000000000 000012346999999 99


Q ss_pred             CCceEEEEEEEeC
Q psy14532         85 HDRGVYWCTATNK   97 (258)
Q Consensus        85 ~d~G~Y~C~~~~~   97 (258)
                      +|+|.|.|.+...
T Consensus        79 ~Dsa~YyCa~~~~   91 (110)
T d2esvd1          79 RDTAVYYCIVVRS   91 (110)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCceEEEEEEeCC
Confidence            9999999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2.2e-08  Score=63.02  Aligned_cols=100  Identities=15%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             eeceeeeecCCCceEEEEEEeec------CCCeEEEeeCCEeCcCCccccceecccceeeccccccceee-----eeCCc
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN------PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNGT   75 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   75 (258)
                      ..|..+.+.+|++|+|.|.....      ....+.|++........    .............+..+..+     ..+.+
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   80 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQV----VIHSGDPKLVDKRFRGRAELMGNMDHKVCN   80 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEE----EEESSCGGGSCTTTTTTEEECSCGGGTBCC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccce----eeeeccccccccccCCCeEEEEeCcCCEEE
Confidence            34678899999999999997521      12246677642111000    00000000011111122212     23567


Q ss_pred             EEEeecccCCCceEEEEEEEeCCcce--eeceEEEEEe
Q psy14532         76 LLIENVQKDHDRGVYWCTATNKQGRS--SSQNVHISVT  111 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~  111 (258)
                      |.|.++ +.+|+|.|.|.+.......  ....+.|+|.
T Consensus        81 L~I~~v-~~~DsG~Y~C~v~~~~~~~~~~~~~~~ltVt  117 (118)
T d1qfoa_          81 LLLKDL-KPEDSGTYNFRFEISDSNRWLDVKGTTVTVT  117 (118)
T ss_dssp             EEECSC-CGGGCEEEEEEEECC-CCEEECSSCEEEEEE
T ss_pred             EEECCC-ChhHCEEEEEEEEeCCCCeEEcCCCEEEEEe
Confidence            999999 9999999999997654321  1244455553

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=6.9e-08  Score=59.65  Aligned_cols=96  Identities=14%  Similarity=0.164  Sum_probs=54.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEee-cCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.|...   ..+.+|+.++|.|.+.+ .|..  .+.|++++..+...........            .........|.+
T Consensus         4 ~P~I~~~---~~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~------------~~~~~~~s~l~~   68 (109)
T d1vcaa1           4 DPEIHLS---GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR------------KSLETKSLEVTF   68 (109)
T ss_dssp             CCEEEES---SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSS------------CCCEEEEEEEEE
T ss_pred             CCEEecC---CCccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccccccc------------CCcceeeEEEEc
Confidence            4566433   24789999999999876 5543  6899999887653211000000            001111223555


Q ss_pred             eecccCCCceEEEEEEEeCCccee------eceEEEEEecC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRSS------SQNVHISVTGA  113 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~~------~~~~~l~v~~~  113 (258)
                      .-. ..++...|+|.|.+..+...      .....|.|...
T Consensus        69 ~~~-~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          69 TPV-IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             CCC-GGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             cCC-hHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeC
Confidence            444 55555689999998754321      23444666544

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.69  E-value=2.9e-08  Score=61.84  Aligned_cols=88  Identities=14%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee----eeCCcEE
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV----FPNGTLL   77 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~   77 (258)
                      ++.+.|..+.+.+|++|+|.|.... ....+.|||.  |+.+..-    .............+..+...    .....|.
T Consensus         2 ~V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   76 (113)
T d1j8he1           2 KVTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLI----YFSYDVKMKEKGDIPEGYSVSREKKERFSLI   76 (113)
T ss_dssp             CEEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEE----EEESSTTCCEECSCCTTEEEECSSTTBCEEE
T ss_pred             EEEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCccee----eeeeeeeeeecccccccceEEeccCcEeeeE
Confidence            3567788889999999999998643 3457999983  2211100    00000111111111111111    1124689


Q ss_pred             EeecccCCCceEEEEEEEeC
Q psy14532         78 IENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.++ +.+|+|.|.|.+...
T Consensus        77 i~~~-~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          77 LESA-STNQTSMYLCASSST   95 (113)
T ss_dssp             ESSC-CGGGCEEEEEEEECT
T ss_pred             eccC-ccCCcccEEeeEccC
Confidence            9999 999999999988653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.69  E-value=2.2e-07  Score=57.50  Aligned_cols=98  Identities=16%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEEE
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLI   78 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i   78 (258)
                      .+.+ .+.+.+|++|+|.|...+..  ...+.||+.  +.....     .....  .........+...   ..+..|.|
T Consensus         5 tQ~p-s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~-----l~~~~--~~~~~~~~~~~~~~~~~~~~~L~I   76 (114)
T d2rhea_           5 TQPP-SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKL-----LIYYN--DLLPSGVSDRFSASKSGTSASLAI   76 (114)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEE-----EEBTT--TBCCTTCCTTEEEEEETTEEEEEE
T ss_pred             ccCC-cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEE-----EEEEe--eeeccCCCCcceecCCCCeeeeEe
Confidence            4444 68899999999999976542  457999984  221110     00000  0011111111111   12346999


Q ss_pred             eecccCCCceEEEEEEEeCCcc--eeeceEEEEEec
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGR--SSSQNVHISVTG  112 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~  112 (258)
                      .++ +.+|++.|.|........  ....-..|.|..
T Consensus        77 ~~v-~~~DsA~YyCA~~~~~~~~~~FG~GT~LtVlg  111 (114)
T d2rhea_          77 SGL-ESEDEADYYCAAWNDSLDEPGFGGGTKLTVLG  111 (114)
T ss_dssp             SSC-CGGGCEEEEEEEEETTTTEEEECCCEEEEECS
T ss_pred             ccc-CcccCceEEEeecCCCCCCCEECCCeEEEECC
Confidence            999 999999999987643211  112334566653

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.68  E-value=4.7e-08  Score=60.70  Aligned_cols=86  Identities=19%  Similarity=0.262  Sum_probs=51.3

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee----eCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i   78 (258)
                      +.+.|....+.+|++++|.|.... ....+.|||.  ++....-   ... .............+....    .+..|.|
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   76 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLI---HYS-VGAGITDQGEVPNGYNVSRSTTEDFPLRL   76 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEE---EEE-EETTEEEECSSCTTCEECCSSSSBCCEEE
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccce---eeE-eccCceecCccccceeEecCCCCEEEEEE
Confidence            356677888999999999998753 3568999983  3221100   000 011111111111211111    1346999


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ ..+|+|.|.|....
T Consensus        77 ~~~-~~~DsavYyCA~~~   93 (112)
T d2bnub1          77 LSA-APSQTSVYFCASSY   93 (112)
T ss_dssp             SSC-CGGGCEEEEEEEEC
T ss_pred             CCC-CHHHCEEEEEeecC
Confidence            999 99999999998764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=6.4e-08  Score=60.65  Aligned_cols=85  Identities=9%  Similarity=-0.068  Sum_probs=47.6

Q ss_pred             ceeeeecCCCceEEEEEEeecCCC---eEEEeeC--CEeCcCCccccceecccceeeccccc-cceeeeeCCcEEEeecc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTP---HISWKLD--GYPLAGDRHENKNRIGEARVQQLPLN-RRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~   82 (258)
                      |..+.+.+|++|+|.|........   .+.|||.  ++....-.  ..+...........+. .........+|.|.++ 
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-   82 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCA--TTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGL-   82 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEE--EEECSSSBEECTTCTTEEEEEETTEEEEEECSC-
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEE--EEeCCcccccCCCCcEEEEeCCCCEEEEEhhcC-
Confidence            567888999999999997543222   4789984  32211000  0000000000111111 1111122346999999 


Q ss_pred             cCCCceEEEEEEEe
Q psy14532         83 KDHDRGVYWCTATN   96 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~   96 (258)
                      +.+|+|.|.|.+..
T Consensus        83 ~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          83 RAVDTGLYLCKVEL   96 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCEeEEEEEec
Confidence            99999999998764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.66  E-value=9.9e-08  Score=59.79  Aligned_cols=89  Identities=12%  Similarity=0.125  Sum_probs=51.0

Q ss_pred             cceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CC
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NG   74 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   74 (258)
                      ++.+.+..+...+|++|+|.|...+.  ....+.|||.  ++.+..-   ..............+..+.....     ..
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l---~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~   79 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFL---LYVLATPTHIFLDKEYKKMEASKNPSASTS   79 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEE---EEECSSCCCEEEESSSSEEEEEECCTTTEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCccccccc---ccccccccceeeeccccccccccccccccc
Confidence            45566677888899999999987654  2346999983  2211100   00000000011111122222221     12


Q ss_pred             cEEEeecccCCCceEEEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .|.|.++ +.+|+|.|.|....
T Consensus        80 ~L~I~~l-~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          80 ILTIYSL-EEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEEECSC-CGGGCSEEEEEECC
T ss_pred             ccccccc-ccccceeEEEEEcC
Confidence            4899999 99999999997754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.6e-08  Score=57.44  Aligned_cols=88  Identities=18%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             cCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC-
Q psy14532        112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-  190 (258)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~-  190 (258)
                      .+|.+...+...+..|++|+|.|.........+.|++++........ .......+.|.+++. .|+|.|+|....... 
T Consensus         4 PkP~Lsa~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~-~~~~~a~F~l~~v~~-~~~G~Y~C~y~~~~~p   81 (96)
T d1ucta2           4 GKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQ-SGEHPANFSLGPVDL-NVSGIYRCYGWYNRSP   81 (96)
T ss_dssp             CCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEE-ECSSSEEEECCSCCG-GGCEEEEEEEECTTST
T ss_pred             CCCEEEEeCCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEc-CCCcccEEEEecccc-ccCcEEEEEEEcCCCC
Confidence            34555555556789999999999864333447889998865433221 112234688889997 999999998875432 


Q ss_pred             ---CCccceEEEEe
Q psy14532        191 ---RSSSQNVHISV  201 (258)
Q Consensus       191 ---~~~~~~~~l~v  201 (258)
                         +..+..+.|.|
T Consensus        82 ~~~S~~Sd~leL~V   95 (96)
T d1ucta2          82 YLWSFPSNALELVV   95 (96)
T ss_dssp             TEECCCCCCEEEEE
T ss_pred             CCccCCCCCEEEEE
Confidence               34466666655

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.66  E-value=1.8e-08  Score=62.86  Aligned_cols=87  Identities=15%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee----eCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i   78 (258)
                      +.+.|..+.+.+|++|+|.|...+ ....+.|||.  ++....-   . ...............+....    .+.+|.|
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   76 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFL---F-EYFNETQRNKGNFPGRFSGRQFSNSRSEMNV   76 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEE---E-EEETTEEEEECSCCTTEEEEECTTSCEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEee---e-eecccccccccccccceeeccCcCCeeEEEE
Confidence            356678888999999999998654 3457999982  2221100   0 00011111111122221111    1246999


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|+|.|.|.+...
T Consensus        77 ~~~-~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          77 STL-ELGDSALYLCASSLA   94 (113)
T ss_dssp             CSC-CGGGCEEEEEEEESS
T ss_pred             CCC-CcccceeeeeeeeCC
Confidence            999 999999999987653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.66  E-value=3.7e-08  Score=61.24  Aligned_cols=88  Identities=15%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeecccccccee----eeeCCcEEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLI   78 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i   78 (258)
                      +.+.|..+.+.+|++|+|.|.... ....+.|||.  ++.+..-    ................+..    .....+|.|
T Consensus         1 V~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i   75 (112)
T d2cdeb1           1 IYQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLI----HYSYGVNSTEKGDLSSESTVSRIRTEHFPLTL   75 (112)
T ss_dssp             EEEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEE----EEESSTTCCEESSSCCCCEECCSSSSBCCEEB
T ss_pred             CEECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEe----eeeeccCccccccccccceeecCCCCceEeee
Confidence            356778889999999999998653 3467999984  2211100    0000000001111111111    112356999


Q ss_pred             eecccCCCceEEEEEEEeCC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      .++ +.+|+|.|.|.+....
T Consensus        76 ~~~-~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          76 ESA-RPSHTSQYLCASSENI   94 (112)
T ss_dssp             SSC-CTTTCSEEEEEEECSS
T ss_pred             ccc-cccccccEEEEEecCC
Confidence            999 9999999999877543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.65  E-value=1.1e-07  Score=57.37  Aligned_cols=80  Identities=20%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc---E
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT---L   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l   76 (258)
                      ||++...+.. .+..|+.++|.|.+.++ | ...|.|+++|+.+..........                ...+++   .
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~----------------~~~dgtf~~~   65 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFF----------------VNRDYSFHKL   65 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCE----------------ECTTSCEEEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeE----------------ECCCCCEEEE
Confidence            7888665443 45679999999999996 3 45899999998776431111100                011222   1


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+.+.|+|.+.+...
T Consensus        66 s~l~v-~~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          66 SYLTF-IPSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             EEEEE-CCCTTCCEEEEEECTTS
T ss_pred             EEeEE-cCCCCCEEEEEEEECCC
Confidence            23334 45677789999998653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.1e-08  Score=59.53  Aligned_cols=84  Identities=15%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             eeeeecCCCceEEEEEEee--cCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeee-----CCcEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-----NGTLLIEN   80 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~   80 (258)
                      ....+.+|++|+|.|...+  .....+.|+|.  +.....-    .............+..|..+..     ..+|.|.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l----~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~   82 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTL----ACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVN   82 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEE----EECCSSCCSSCCEEETTEEEEEETTTTEEEEEECS
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEE----EecCCCCceEcceECCeEEEEEECCCCEEEEEEcc
Confidence            3466789999999998754  34557899983  2111000    0000000001111112222211     13588999


Q ss_pred             cccCCCceEEEEEEEeCC
Q psy14532         81 VQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~~~   98 (258)
                      + +.+|+|.|.|.+....
T Consensus        83 l-~~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          83 L-QVEDSGLYQCVIYQPP   99 (113)
T ss_dssp             C-CGGGCEEEEEEECCTT
T ss_pred             C-CcccCceEEEEEECCC
Confidence            9 9999999999886544

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.5e-08  Score=57.59  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...|. ..|..|++|+|.|.... ....+.|+|+|......     ...               ....+.+.|.++
T Consensus         4 kPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~-----~~~---------------~~~~a~F~i~~v   61 (93)
T d1olla2           4 TPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ-----RGY---------------GKVQAEFPLGPV   61 (93)
T ss_dssp             CCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE-----EEE---------------CSSEEEEEEEEC
T ss_pred             CCEEEEeCC-CcccCCCcEEEEECCCC-CCCEEEEEECCCcccee-----ecC---------------CCceeEEEeccc
Confidence            677877775 45789999999998653 45689999976532111     000               001346889999


Q ss_pred             ccCCCceEEEEEEEeCCc--ceeeceEEEEEe
Q psy14532         82 QKDHDRGVYWCTATNKQG--RSSSQNVHISVT  111 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~  111 (258)
                       +..|+|.|+|.......  ...+..+.|.|.
T Consensus        62 -~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          62 -TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             -CGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             -ChhcCceEEEEeECCCCCcCCCCCCEEEEee
Confidence             99999999997543221  222355555553

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.63  E-value=2.1e-07  Score=57.67  Aligned_cols=84  Identities=19%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec------CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN------PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPN   73 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~------~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   73 (258)
                      +.+.|..+.+.+|++|+|.|...+.      ....+.|||.  |+....-       .............+...   ...
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll-------~~~~~~~~~~~~~~~s~~~s~~~   76 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLL-------IYWASTRESGVPDRFTGSGSGTD   76 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEE-------EETTTEECTTSCTTEEEEEETTE
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEE-------EecccccCCCCCccEEEeCCCCe
Confidence            4577888999999999999986532      1235999984  2211100       00000001111111111   122


Q ss_pred             CcEEEeecccCCCceEEEEEEEe
Q psy14532         74 GTLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        74 ~~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .+|.|.++ +.+|+|.|.|....
T Consensus        77 ~~L~I~~l-~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          77 FTLTITSV-QAEDLAVYYCKQSY   98 (113)
T ss_dssp             EEEEESSC-CGGGCEEEEEEECS
T ss_pred             EeEEeccc-ccCCCeEEEecccC
Confidence            36999999 99999999997653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6.5e-08  Score=58.02  Aligned_cols=88  Identities=13%  Similarity=0.142  Sum_probs=58.1

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE--EecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK--VFPNGTLLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      +|.+...+...+..|++|+|.|.... ....+.|++++..........  ......+.|.++.. .|+|.|+|...+...
T Consensus         4 KPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~-~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           4 KPFIWAEPHFMVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNS-RMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCG-GGCEEEEEEEEETTE
T ss_pred             CCEEEeeCCCcccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeec-CCCceEEEEeCCCCC
Confidence            34444445556889999999998753 345788888875432111100  01123689999998 999999999887643


Q ss_pred             -CCccceEEEEee
Q psy14532        191 -RSSSQNVHISVT  202 (258)
Q Consensus       191 -~~~~~~~~l~v~  202 (258)
                       +..+..+.|.|.
T Consensus        82 ~S~~Sd~leL~VT   94 (95)
T d1olla1          82 WSEPSNLLDLVVT   94 (95)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             ccCCCCCEEEEEe
Confidence             345677777664

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.61  E-value=1.5e-07  Score=56.32  Aligned_cols=78  Identities=15%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...|. ..+..|++|+|.|.... ....+.++|+|..............               ....+.+.|.++
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~---------------~~~~a~F~l~~v   64 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHD---------------GVSKANFSISRM   64 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEET---------------TEEEEEEEESSC
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecC---------------CceEEEEEEccc
Confidence            688887774 56789999999998653 3568889987643211100000000               001246889999


Q ss_pred             ccCCCceEEEEEEEeC
Q psy14532         82 QKDHDRGVYWCTATNK   97 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~   97 (258)
                       +..|+|.|+|.....
T Consensus        65 -~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          65 -TQDLAGTYRCYGSVT   79 (96)
T ss_dssp             -CGGGCEEEEEEEEBT
T ss_pred             -CcccCeEEEEEEEcC
Confidence             999999999987654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.59  E-value=3e-07  Score=57.82  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=50.5

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceecc-cceeeccccccceeeee-----CC
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFP-----NG   74 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~   74 (258)
                      +.+++..+...+|++++|.|.+.+.  ....+.|||.  ++.+..-   ..+... ..........++.....     ..
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l---~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~   80 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFL---VSISYDGTVRKESGIPSGKFEVDRIPETSTS   80 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEE---EEECSSSCEEECTTCCTTSEEEEEETTTTEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEe---eecccccccccccccccceeEEeeeccccce
Confidence            4555667788899999999999874  3457999983  2221100   000000 00001101111211111     13


Q ss_pred             cEEEeecccCCCceEEEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .|.|.++ +.+|+|.|.|....
T Consensus        81 ~L~i~~l-~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          81 TLTIHNV-EKQDIATYYCALWE  101 (123)
T ss_dssp             EEEECSC-CGGGCEEEEEEEEE
T ss_pred             eeccccc-ccccCcEEEEeeeC
Confidence            5899999 99999999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.58  E-value=1.4e-07  Score=57.94  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCcEEEeeccc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGTLLIENVQK   83 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~   83 (258)
                      |..+.+.+|++|+|.|.........+.|||.  ++....       .+............+.   ......+|.|.++ +
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~   78 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVL-------VVYDDSDRPSGIPERFSGSNSGNMATLTISRV-E   78 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEE-------EEBTTTBCCTTSCTTEEEEEETTEEEEEESSC-C
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEE-------EEEccccCCCceeeeEeeecCCCccceEEeee-c
Confidence            4468899999999999865544457999973  221110       0000000111111111   1112346889999 9


Q ss_pred             CCCceEEEEEEEeC
Q psy14532         84 DHDRGVYWCTATNK   97 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~   97 (258)
                      .+|+|.|.|.+...
T Consensus        79 ~~DsavYyCA~~~~   92 (109)
T d1w72l1          79 AGDEADYYCQVWDS   92 (109)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCCCEEEEEEecCC
Confidence            99999999987654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.6e-07  Score=54.60  Aligned_cols=79  Identities=13%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL---   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---   76 (258)
                      ||++..-+. ..+..|+.++|.|.+.++ | ...+.|.++|..+.........                 ...+++.   
T Consensus         5 ~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~-----------------~~~dgty~~~   66 (100)
T d1k5nb_           5 TPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS-----------------FSKDWSFYLL   66 (100)
T ss_dssp             CCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCE-----------------ECTTSCEEEE
T ss_pred             CCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcccccee-----------------cCCCCcEEEE
Confidence            677655332 235689999999999996 4 3489999999988543211111                 1123332   


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ..++.+.|+|.+.+...
T Consensus        67 s~l~v-~~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          67 YYTEF-TPTEKDEYACRVNHVTL   88 (100)
T ss_dssp             EEEEE-CCCSSCCEEEEEECTTC
T ss_pred             EEeEE-CCCCCCEEEEEEEeCCC
Confidence            23344 55677899999998653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.55  E-value=1.4e-07  Score=56.54  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             CCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee-eCCcEEEeecccCCCceEEEEE
Q psy14532         17 GPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-PNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      |++|+|.|.........+.|||.  +.....    -............++....... ...+|.|.++ +.+|+|.|.|.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~----l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~-~~~Dsg~YyCa   75 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPEL----IMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDS-QPSDSATYLCA   75 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEE----EEEECSSEEEEETTEEEEEETTTTEEEEEECSC-CGGGCEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCccccc----ceeeeeeccCCCCcEEEEecCCCCEEeEEeecc-ccCcCccceee
Confidence            78999999987766678999983  211100    0000011111111121111111 1246999999 99999999998


Q ss_pred             EEeC
Q psy14532         94 ATNK   97 (258)
Q Consensus        94 ~~~~   97 (258)
                      +...
T Consensus        76 ~~~~   79 (94)
T d2gj6d1          76 VTTD   79 (94)
T ss_dssp             EESS
T ss_pred             EecC
Confidence            7653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.55  E-value=3.2e-07  Score=56.69  Aligned_cols=84  Identities=20%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceee---eeCCcEE
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLL   77 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~   77 (258)
                      +++ |..+.+.+|++|+|.|...+.  ....+.||+.  +.....-       .............+...   ....+|.
T Consensus         4 ltQ-p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l-------~~~~~~~~~~~~~r~~~~~~~~~~~L~   75 (111)
T d1rzfl1           4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLV-------IYENNERPSGIPDRFSGSKSGTSATLG   75 (111)
T ss_dssp             BBC-CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEE-------EBTTTBCCTTCCTTEEEEEETTEEEEE
T ss_pred             eee-CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEE-------eeecCCCccccccceeeeCCCCEeeeE
Confidence            344 457899999999999987653  2346999973  2211100       00000001111111111   1224699


Q ss_pred             EeecccCCCceEEEEEEEeC
Q psy14532         78 IENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      |.++ +.+|+|.|.|.+...
T Consensus        76 I~~~-~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          76 ITGL-QTGDEADYYCGTWDS   94 (111)
T ss_dssp             ESSC-CGGGCSEEEEEEEET
T ss_pred             Eeee-ccccCcceEEeecCC
Confidence            9999 999999999987654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.53  E-value=4.7e-07  Score=56.05  Aligned_cols=87  Identities=16%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             ceeeceeeeecCCCceEEEEEEeec---CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~---~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +.+ |..+.+.+|++|+|.|...+.   ....+.|||.  ++....-......   ........+. ......+..|.|.
T Consensus         4 ltQ-P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~---~~~~~~~~~~-~~~~~~~~~L~I~   78 (112)
T d1lgva1           4 LTQ-PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNK---RPSGVSDRFS-GSKSGNSASLTIS   78 (112)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTB---CCTTSCTTEE-EEEETTEEEEEEC
T ss_pred             ccC-CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeecc---ccCCCcccEE-EECCCCEeeEEeC
Confidence            444 678899999999999987653   2246899983  2211100000000   0000000010 1111123469999


Q ss_pred             ecccCCCceEEEEEEEeC
Q psy14532         80 NVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~   97 (258)
                      ++ +.+|+|.|.|.....
T Consensus        79 ~l-~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          79 GL-QAEDEADYYCSSYDG   95 (112)
T ss_dssp             SC-CGGGCEEEEEEEECS
T ss_pred             cC-ccccCEEEEEeeecC
Confidence            99 999999999987653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.52  E-value=3.7e-07  Score=55.97  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccce---eeeeCCcEEEeeccc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQ---KVFPNGTLLIENVQK   83 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~   83 (258)
                      |..+.+.+|++|+|.|.........+.|||.  |+....       .+.........+..+.   ....+..|.|.++ +
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~-------l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l-~   77 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILL-------LIYMDNKRPSGIPERFSGSTSGTTATLTISGA-Q   77 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEE-------EEBTTTBCCTTSCTTEEEEEETTEEEEEETTC-C
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceee-------eccccccccccccceeeecCCCCEeeeeEcCc-c
Confidence            5678899999999999875444457899983  321100       0000000011111111   1112346899999 9


Q ss_pred             CCCceEEEEEEEe
Q psy14532         84 DHDRGVYWCTATN   96 (258)
Q Consensus        84 ~~d~G~Y~C~~~~   96 (258)
                      .+|+|.|.|.+..
T Consensus        78 ~~Dsa~YyCA~~~   90 (108)
T d1nfde1          78 PEDEAAYYCLSSY   90 (108)
T ss_dssp             GGGCSEEEEEEEE
T ss_pred             ccCCceEEEEeec
Confidence            9999999998764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.51  E-value=1e-08  Score=61.73  Aligned_cols=84  Identities=19%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             eeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccc-eeeeeCCcEEEeecccCCCc
Q psy14532         11 QQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRR-QKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~d~   87 (258)
                      .+.|.+|++|+|.|.... ....+.|||.  ++....-   .............++... .......+|.|.++ +.+|+
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l---~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~Ds   76 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHL---ILIRSNEREKHSGRLRVTLDTSKKSSSLLITAS-RAADT   76 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCC---CEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSC-CSTTC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCcccc---ccccceecccccccceeeccCcceecccCcCCC-CcccC
Confidence            457899999999998653 3457999983  3222110   000000001111111110 01112346999999 99999


Q ss_pred             eEEEEEEEeCCc
Q psy14532         88 GVYWCTATNKQG   99 (258)
Q Consensus        88 G~Y~C~~~~~~~   99 (258)
                      |.|.|.+....+
T Consensus        77 a~YyCA~~~~~g   88 (96)
T d1ymmd1          77 ASYFCATDTTSG   88 (96)
T ss_dssp             SCCEEEEEETTS
T ss_pred             EEEeEeEecCCC
Confidence            999998775543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.5e-07  Score=57.08  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             ceecCCcEEEEeeeCc-ccCc--eEEEEeCCcccCCCcceE-------EecCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532        123 SAIAGEPLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQK-------VFPNGTLLIENVQKDHDRGVYWCTATNKQGRS  192 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~-~~~~--~i~W~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~  192 (258)
                      .+.+|+.++|.|.+.+ .|.+  .+.|++++..+.......       ......|.+.. .+++++..|+|+|.+.....
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~-~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP-VIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECC-CGGGTTCEEEEEEEECSCCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccC-ChHHCCcEEEEEEEcCcCCc
Confidence            3679999999999965 6644  689999887654211100       11112344443 34356668999999886432


Q ss_pred             ------ccceEEEEeecCC
Q psy14532        193 ------SSQNVHISVTVPP  205 (258)
Q Consensus       193 ------~~~~~~l~v~~~p  205 (258)
                            ......|.|+++|
T Consensus        91 ~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          91 DSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TTSCSEEEEEEECCEECCC
T ss_pred             cccccccceeEEeEEEeCC
Confidence                  1234457777655

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.50  E-value=1.3e-06  Score=53.15  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      +.....+.+|++++|.|.+.++.  ...+.|+|.  |+.+.--   ..+...........+..|..+..+     ..|.|
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwl---g~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i   82 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWI---GYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRL   82 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEE---EEECTTSCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceee---eeecccccceeccceeecceeecccchhhhhccc
Confidence            33456688999999999998863  447899983  3322110   001111111122233333333322     24889


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|++.|.|.....
T Consensus        83 ~~L-~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          83 SSV-TAADTAVYYCARNLI  100 (116)
T ss_dssp             CSC-CGGGCEEEEEEEECS
T ss_pred             ccc-ccccceEEEeeeecC
Confidence            999 999999999976543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.50  E-value=1e-06  Score=52.75  Aligned_cols=81  Identities=15%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE--
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL--   76 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--   76 (258)
                      .||.+..... ..+..++.++|.|.+.++  +...|.|.++|+.+...........                ..+++.  
T Consensus         2 ~PP~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~----------------~~dgty~~   64 (98)
T d1hdmb1           2 RPPSVQVAKT-TPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQP----------------NGDWTYQT   64 (98)
T ss_dssp             BCCEEEEEEC-CCCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEE----------------CSSSCEEE
T ss_pred             CCCEEEEEcC-CCccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEE----------------CCCCCEEE
Confidence            3787765432 235678899999999996  3558999999988754421111110                112221  


Q ss_pred             -EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 -LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 -~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                       ....+ ...+...|+|.+.+...
T Consensus        65 ~s~L~v-~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          65 LSHLAL-TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             EEEEEE-CCCTTCCEEEEEECTTS
T ss_pred             EEEeEc-CCCCCCEEEEEEEeCCC
Confidence             12334 45566789999998654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.2e-07  Score=55.19  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=57.7

Q ss_pred             cCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC--
Q psy14532        112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ--  189 (258)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~--  189 (258)
                      .+|.+...+...+..|++|+|.|.... ....+.|+|++....... ........+.|.++.. .|+|.|+|......  
T Consensus         3 pkPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~-~~~~~~a~F~i~~v~~-~~~G~Y~C~~~~~~~~   79 (93)
T d1olla2           3 DTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR-GYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHA   79 (93)
T ss_dssp             CCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE-EECSSEEEEEEEECCG-GGCEEEEEECEEETTE
T ss_pred             CCCEEEEeCCCcccCCCcEEEEECCCC-CCCEEEEEECCCccceee-cCCCceeEEEecccCh-hcCceEEEEeECCCCC
Confidence            455565555667889999999998753 345788999876533211 1111234689999997 99999999754321  


Q ss_pred             CCCccceEEEEee
Q psy14532        190 GRSSSQNVHISVT  202 (258)
Q Consensus       190 ~~~~~~~~~l~v~  202 (258)
                      -+..+..+.|.|.
T Consensus        80 wS~~SdpLeL~Vt   92 (93)
T d1olla2          80 WSFPSEPVKLLVT   92 (93)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             cCCCCCCEEEEee
Confidence            1234666666653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.48  E-value=9.4e-07  Score=54.17  Aligned_cols=83  Identities=20%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCC-----cEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-----TLLIEN   80 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~i~~   80 (258)
                      ....+.+|+++.|+|.+.++.  ...+.|+|.  |+.+..-   ..+..+........+..|..+..+.     .|.|.+
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl---~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~   83 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFV---SGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDS   83 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEE---EEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceee---eecccccchhhhhhhhcceEEecccCCcceeccccc
Confidence            345688999999999998864  336889984  3222110   0011111112223333444444332     488999


Q ss_pred             cccCCCceEEEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATN   96 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~   96 (258)
                      + +.+|++.|.|....
T Consensus        84 L-~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          84 L-KPDDTAMYYCKPSL   98 (119)
T ss_dssp             C-CGGGCEEEEEEEEE
T ss_pred             C-CcCCcceEeeeecc
Confidence            9 99999999997554

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.48  E-value=1.2e-06  Score=52.75  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             cCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecC--CeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN--GTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .+|.+...+...+..|++|+|.|.... +...+.|+|++..............  ..+.|..+.. .|+|.|+|......
T Consensus         5 pkPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~G~Y~C~y~~~~   82 (99)
T d1nkra2           5 EKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA-THGGTYRCFGSFHD   82 (99)
T ss_dssp             CCCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEEC-CSCEEEEEEEEETT
T ss_pred             CCCEEEEeCCCcccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEecccc-ccCEEEEEEeecCC
Confidence            345555555667889999999998653 4557899998865443222111122  2457777776 89999999876543


Q ss_pred             C----CCccceEEEEe
Q psy14532        190 G----RSSSQNVHISV  201 (258)
Q Consensus       190 ~----~~~~~~~~l~v  201 (258)
                      .    +..+..+.|.|
T Consensus        83 ~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          83 SPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEEECCCCCCEEEEE
T ss_pred             CCCCccCCCCCEEEEE
Confidence            2    33456666654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.48  E-value=8.9e-07  Score=55.38  Aligned_cols=86  Identities=19%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee-----eCC
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNG   74 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   74 (258)
                      ++...+..+.+.+|++++|.|...+..  ...+.|||.  |+.+..       .+.........+..+....     ...
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~-------l~~~~~~~~~~~~~r~~~s~~~~~~~~   75 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTF-------IYREKDIYGPGFKDNFQGDIDIAKNLA   75 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEE-------EEETTTEECTTTTTTEEEEEEGGGTEE
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEcccccccee-------eeccccceeecccccceeeccccccce
Confidence            456667788899999999999987543  346999973  221110       0000011111112221111     124


Q ss_pred             cEEEeecccCCCceEEEEEEEeC
Q psy14532         75 TLLIENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .|.|.++ +.+|+|.|.|.....
T Consensus        76 ~L~i~~~-~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          76 VLKILAP-SERDEGSYYCACDTL   97 (120)
T ss_dssp             EEEESSC-CGGGCEEEEEEEECC
T ss_pred             ecccccc-cccCCceeecCcccC
Confidence            6999999 999999999986543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=8.2e-07  Score=53.49  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc---E
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT---L   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l   76 (258)
                      ||++...+.. .+..|+.++|.|.+.++ | ...|+|.++|..+.........                 ...+++   .
T Consensus         4 ~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~-----------------~~~dgtf~~~   65 (99)
T d1lk2b_           4 TPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMS-----------------FSKDWSFYIL   65 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEE-----------------ECTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECcee-----------------ECCCCCEEEE
Confidence            6777554332 34578899999999996 3 3489999999887654211110                 011222   1


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+.+.|+|.+.+...
T Consensus        66 s~l~v-~~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          66 AHTEF-TPTETDTYACRVKHDSM   87 (99)
T ss_dssp             EEEEE-CCCSSCCEEEEEECTTS
T ss_pred             EEeEe-cCcCCCEEEEEEEeCCC
Confidence            23344 45567799999998653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.7e-07  Score=57.49  Aligned_cols=84  Identities=12%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             eeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceeccc-ceeeccccccceeeeeC-----CcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIGE-ARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      +...+.+|++|+|.|...+.  ....+.|+|.  ++...     ..+.... .......+.+|..+..+     .+|.|.
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~-----~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~   77 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPL-----TLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMT   77 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCE-----EEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEEC
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEE-----EEEecCCCceeechhhCcEEEEEEECCCCEEEEEEC
Confidence            45678999999999998753  4557899984  22100     0000000 00000111222223221     248899


Q ss_pred             ecccCCCceEEEEEEEeCCc
Q psy14532         80 NVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ++ +.+|+|.|.|.+.....
T Consensus        78 ~L-~~eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          78 DL-QVTDSGLYRCVIYHPPN   96 (110)
T ss_dssp             SC-CGGGCEEEEEEEECTTS
T ss_pred             cc-ccCCCEEEEEEEeCCCC
Confidence            99 99999999999866543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.48  E-value=7.8e-07  Score=55.03  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             cceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccc--eeeeeCCcEEEe
Q psy14532          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRR--QKVFPNGTLLIE   79 (258)
Q Consensus         4 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~   79 (258)
                      .+.+.|..+.+.+|++|+|.|.........+.|||.  |+.+..-.  .....+....... ...+  .....+..|.|.
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~--~~~~~~~~~~~~~-~~~~f~~~~~~~~~l~l~   79 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLF--TLRSPGDKEVKSL-PGADYLATRVTDTELRLQ   79 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEE--ECCSTTCEEEEEE-TTEEEEEEEEETTEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccc--eeccccccccccc-cccccccccccccEEEEe
Confidence            467788889999999999999987655568999984  32211000  0000001111110 0111  112234568888


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      .+ ..+|++.|.|....
T Consensus        80 ~~-~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          80 VA-NMSQGRTLYCTCSA   95 (112)
T ss_dssp             EE-SCCSCEEEEEEEES
T ss_pred             cC-CccCCccEEEEEec
Confidence            88 89999999998754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.46  E-value=4.2e-07  Score=56.27  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=47.3

Q ss_pred             eceeeeecCCCceEEEEEEeecC-CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeee---eCCcEEEeec
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP-TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVF---PNGTLLIENV   81 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~   81 (258)
                      .|..+.+.+|++|+|.|...+.. ...+.|||.  |+.+..-   . .... ....  ....+....   ....|.|.++
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i---~-~~~~-~~~~--~~~~~~~~~~~~~~~~L~i~~~   76 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYV---I-HGLT-SNVN--NRMASLAIAEDRKSSTLILHRA   76 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEE---E-EESS-SSEE--CSSEEEEECTTSSEEEEEESSC
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCccee---e-eecc-eecc--ccccceeecccCCeeEEEEeec
Confidence            45678899999999999976543 346999983  2221100   0 0000 0000  001111111   1235999999


Q ss_pred             ccCCCceEEEEEEEe
Q psy14532         82 QKDHDRGVYWCTATN   96 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~   96 (258)
                       +.+|+|.|.|.+..
T Consensus        77 -~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          77 -TLRDAAVYYCILPL   90 (112)
T ss_dssp             -CGGGCEEEEEECCC
T ss_pred             -ccccceeEeeeEec
Confidence             99999999997654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2e-07  Score=58.94  Aligned_cols=80  Identities=24%  Similarity=0.439  Sum_probs=51.7

Q ss_pred             CcceecCCcEEEEeeeCccc----CceEEEEeCCcccC---------------------CCcceEEec------CCeEEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP----IESITWQKGVQQLP---------------------LNRRQKVFP------NGTLLI  169 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~~~~~~---------------------~~~~~~~~~------~~~l~i  169 (258)
                      .+.+.+|+++.|.|.+...+    ...+.|++......                     ...+..+..      +..|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            35678999999999975432    23688987322110                     111222211      236999


Q ss_pred             EecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532        170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT  202 (258)
Q Consensus       170 ~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  202 (258)
                      .+++. +|+|.|.|.+.+..+ .....+.|.|.
T Consensus        93 ~~v~~-~D~G~Y~C~v~~~~~-~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQL-SDIGTYQCKVKKAPG-VANKKIHLVVL  123 (124)
T ss_dssp             CSCCG-GGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             cccEE-ccCEEEEEEEEECCC-eEEeEEEEEEE
Confidence            99998 999999999998765 34455666654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.45  E-value=4.1e-07  Score=54.65  Aligned_cols=87  Identities=22%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      +.....+.+|+++.|+|.+.|..  ...+.|+|.  |+.+..-.................+..|..+..+     ..|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            34456789999999999998854  347899983  3322110000000000001112223333333332     23789


Q ss_pred             eecccCCCceEEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~   95 (258)
                      .++ +.+|++.|.|.-.
T Consensus        86 ~sL-~~eDTAvYYCAr~  101 (109)
T d2ck0h1          86 NNL-KTEDTGIYYCVRG  101 (109)
T ss_dssp             CSC-CGGGCEEEEEEEE
T ss_pred             cCC-CHhHCEEEEEEEc
Confidence            999 9999999999743

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.6e-07  Score=53.46  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV   81 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~   81 (258)
                      +|.|...|.. .+..|++|+|.|.... ....+.++|+|..............              .....+.+.|.++
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~--------------~~~~~a~F~l~~v   67 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHA--------------RGSSRAIFSVGPV   67 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC--------------------CCEEEEEECCC
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcC--------------CCceEEEEEeeec
Confidence            5778777754 5889999999998653 3567888887764322100000000              0001235889999


Q ss_pred             ccCCCceEEEEEEEeCC
Q psy14532         82 QKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        82 ~~~~d~G~Y~C~~~~~~   98 (258)
                       ...|+|.|+|......
T Consensus        68 -~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          68 -SPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             -CTTSCEEEEEEEECTT
T ss_pred             -ccCCCeEEEEeeEcCC
Confidence             9999999999886543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.8e-07  Score=57.68  Aligned_cols=85  Identities=11%  Similarity=0.049  Sum_probs=47.3

Q ss_pred             ceeeeecCCCceEEEEEEeecCCC---eEEEeeC--CEeCcCCccccceecccce-eeccccccceeeeeCCcEEEeecc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTP---HISWKLD--GYPLAGDRHENKNRIGEAR-VQQLPLNRRQKVFPNGTLLIENVQ   82 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~   82 (258)
                      |..+.+.+|++|+|.|........   .+.|||.  ++....-  ...+..+... .....+..........+|.|.++ 
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-   82 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVC--AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL-   82 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEE--EEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSC-
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEE--EEEeCCCCEecccCCcEEeEcCCCCEEEEEeecc-
Confidence            567788999999999997543222   5889984  2211100  0000000000 00000001111122346999999 


Q ss_pred             cCCCceEEEEEEEe
Q psy14532         83 KDHDRGVYWCTATN   96 (258)
Q Consensus        83 ~~~d~G~Y~C~~~~   96 (258)
                      +.+|+|.|.|.+..
T Consensus        83 ~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          83 RAMDTGLYICKVEL   96 (118)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCCEEEEEeEec
Confidence            99999999998764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.43  E-value=7.3e-07  Score=54.67  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             ceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEEe
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      .....+.+|+++.|.|.+.++..  ..+.|+|.  |+.+.--   ..+...........+..|..+..+     ..|.|.
T Consensus         7 sG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv---~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~   83 (120)
T d1dn0b1           7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWI---GEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLS   83 (120)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEE---EEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceee---eeccccccchhccceeeeeEEeccCchheeccccc
Confidence            34456889999999999998643  46889984  3322110   000111111122223334433332     238899


Q ss_pred             ecccCCCceEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTA   94 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~   94 (258)
                      ++ +.+|++.|.|..
T Consensus        84 ~l-~~eDtA~YYCAr   97 (120)
T d1dn0b1          84 SV-TAADTAVYYCAR   97 (120)
T ss_dssp             SC-CGGGCEEEEEEE
T ss_pred             cc-ccccccEEEEEe
Confidence            99 999999999943

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.43  E-value=1.7e-06  Score=52.70  Aligned_cols=88  Identities=14%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceec-ccceeeccccccceeeeeCC-----cE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPNG-----TL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~l   76 (258)
                      .+.....+.+|++|.|+|.+.|+.  ...+.|+|.  |+.+.--   ..+.. .........+..|..+..+.     .|
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwl---g~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L   81 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWV---GSFDPESGESIYAREFQGSVTMTADTSTNIAYM   81 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeee---eecCCccccceecceeeeeeeeecccccceEEE
Confidence            344456689999999999998863  346899983  3322110   01110 11111122334444443322     38


Q ss_pred             EEeecccCCCceEEEEEEEeCC
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                      .|.++ +.+|++.|.|......
T Consensus        82 ~i~~L-~~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          82 ELSSL-RSDDTAVYYCAVPDPD  102 (117)
T ss_dssp             EECSC-CGGGCEEEEEEECSSS
T ss_pred             eeccc-CcCcceEEEEeEcCCC
Confidence            89999 9999999999865443

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.42  E-value=8.1e-07  Score=54.07  Aligned_cols=85  Identities=15%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      +.....+.+|+++.|+|.+.|+.  ...+.|+|.  |+.+.--   ..+.-.........+..|..+..+     ..|.|
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl---g~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~   82 (116)
T d1a2yb_           6 ESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWL---GMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKM   82 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEE---EEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred             eECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeee---eecCccccceecccccccceEeccCCCceEEcce
Confidence            33445689999999999999864  347889984  3322111   000001111112223333333322     23889


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ +.+|++.|.|.-..
T Consensus        83 ~~l-~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          83 NSL-HTDDTARYYCARER   99 (116)
T ss_dssp             CSC-CGGGCEEEEEEEES
T ss_pred             eee-eeccceEEEEEEeC
Confidence            999 99999999997543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=7.2e-07  Score=54.25  Aligned_cols=84  Identities=23%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             eceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      +.....+.+|++++|+|.+.|...  ..+.|+|.  |+.+.--   ..+..+........+..|..+..+     ..|.|
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi---~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~   82 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWI---AAISSGGSPYYNSALKSRLSINRDTSKSQVFLKM   82 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEE---EEECTTCCEEECTTTSSSEEEEEETTTTEEEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeee---eccccccccccccccccceEEecccccceeeccc
Confidence            334566899999999999998643  47899983  4332211   011111111222233344444332     24889


Q ss_pred             eecccCCCceEEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~   95 (258)
                      .++ +.+|++.|.|...
T Consensus        83 ~sL-~~eDtAvYYCAr~   98 (117)
T d1c5db1          83 NSL-QTEDTAIYFCTRE   98 (117)
T ss_dssp             CSC-CGGGCEEEEEEEC
T ss_pred             ccc-ccCcceEEEEecc
Confidence            999 9999999999643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.42  E-value=1.3e-06  Score=53.67  Aligned_cols=85  Identities=20%  Similarity=0.328  Sum_probs=48.6

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|++|+|.|.+.+..  ...+.|+|.  |+.+..-   ..+. ..........+..|..+..+     ..|.
T Consensus         6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l---~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~   82 (119)
T d1qnzh_           6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWI---GNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLE   82 (119)
T ss_dssp             EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEE---EEEETTTTEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEe---eccCCcccccchhhhhcccceeecccccceeeee
Confidence            33445788999999999998753  346899984  3322110   0000 00111111222233323221     2388


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.++ +.+|++.|.|....
T Consensus        83 i~~L-~~eDsAvYYCA~~~  100 (119)
T d1qnzh_          83 FSRL-TSDDSAVYYCAIHY  100 (119)
T ss_dssp             EEEE-CGGGCEEEEEEECS
T ss_pred             eccc-CccceeEEEEEEec
Confidence            9999 99999999996543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.42  E-value=1.5e-06  Score=53.64  Aligned_cols=82  Identities=20%  Similarity=0.310  Sum_probs=47.0

Q ss_pred             eeeeecCCCceEEEEEEeecC----CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP----TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      ....+++|++|+|.|.+.|+.    ...+.|+|.  ++.+..-   ..+...........+..|..+..+     ..|.|
T Consensus         8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l---~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i   84 (120)
T d2agjh1           8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFL---AFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTL   84 (120)
T ss_dssp             CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEE---EEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEE
T ss_pred             CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceee---ecccCCcccccchhhccccceecccccceeeeeE
Confidence            345678999999999988742    246889984  3222110   111111111111122233333221     34899


Q ss_pred             eecccCCCceEEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~   95 (258)
                      .++ +.+|++.|.|...
T Consensus        85 ~~l-~~eDsAvYyCAr~  100 (120)
T d2agjh1          85 TNL-DPVDTATYYCART  100 (120)
T ss_dssp             ESC-CGGGCEEEEEEEE
T ss_pred             Eee-eeccceEEeeEec
Confidence            999 9999999999644

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.41  E-value=1.5e-06  Score=52.32  Aligned_cols=44  Identities=20%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      ||.+...+.. .+..|+.++|.|.+.++ | ...|.|.++|+.+..+
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~   50 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEG   50 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCC
Confidence            6777554322 34568889999999996 4 4489999999887643

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.40  E-value=2.6e-06  Score=52.04  Aligned_cols=84  Identities=20%  Similarity=0.330  Sum_probs=48.8

Q ss_pred             ceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceec---ccceeeccccccceeeeeC-----CcE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRI---GEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+..-   ..+..   .........+..|..+..+     ..|
T Consensus         7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv---~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L   83 (120)
T d1dlfh_           7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWV---AEIRNKANNHATYYAESVKGRFTISRDDSKRRVYL   83 (120)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEE---EEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeee---eeccccccccceeechhceecceeecccccceecc
Confidence            3445678999999999998763  447899983  4332210   00000   0001111223333333322     238


Q ss_pred             EEeecccCCCceEEEEEEEe
Q psy14532         77 LIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .|.++ +.+|++.|.|....
T Consensus        84 ~~~~L-~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          84 QMNTL-RAEDTGIYYCTGIY  102 (120)
T ss_dssp             EECSC-CGGGCEEEEEEEEB
T ss_pred             ceeec-cCCCceEEEeeEec
Confidence            89999 99999999996543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.40  E-value=1.9e-06  Score=52.56  Aligned_cols=83  Identities=17%  Similarity=0.296  Sum_probs=47.7

Q ss_pred             ceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      .....+.+|++++|.|.+.+.  ....+.|+|.  |+.+..-   ..+. ..........+..|..+..+     ..|.|
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl---~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i   83 (115)
T d1f3dh1           7 SGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWI---GYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHL   83 (115)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEE---EEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEe---eccCCCCCcccccceeeEEEEEeeccCceeeEeee
Confidence            344568999999999999875  3447899983  3322111   0000 00111111222233333221     23889


Q ss_pred             eecccCCCceEEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~   95 (258)
                      .++ +.+|++.|.|.-.
T Consensus        84 ~~l-~~eDtAvYYCAr~   99 (115)
T d1f3dh1          84 NSL-TFEDSAVYYCAND   99 (115)
T ss_dssp             CSC-CGGGCEEEEEEEC
T ss_pred             eec-CcCCcEEEEEecc
Confidence            999 9999999999643

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.38  E-value=1e-06  Score=53.92  Aligned_cols=85  Identities=19%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             eceeeeecCCCceEEEEEEeecCCC---eEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCC-----cEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTP---HISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-----TLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~   77 (258)
                      +.....+.+|+++.|+|.+.|+...   .+.|+|.  |+.+.--   ..+...........+..|..+..+.     .|.
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwi---g~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~   82 (119)
T d1ncwh1           6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWM---GYINYSGFTSHNPSLKSRISITRDTSKNQFFLQ   82 (119)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEE---EEEETTSCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeee---eeccccccchhchhccccceEecccccceeecc
Confidence            4445678899999999999986542   5789873  4332211   1111111122223333444443322     388


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.++ +.+|++.|.|....
T Consensus        83 ~~sL-~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          83 LNSV-TTEDTATYYCAGLL  100 (119)
T ss_dssp             ECSC-CGGGCEEEEEEEEE
T ss_pred             cccc-ccCCceEEEEeEec
Confidence            9999 99999999996543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1e-06  Score=53.70  Aligned_cols=88  Identities=14%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+..-+.......++.++|.|.+.++ | ...|.|+++|..+............         ...........|.|.
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~---------~~~gtys~~S~L~v~   74 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRK---------TKGSGFFVFSRLEVT   74 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEE---------CSSSCEEEEEEEEEC
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEe---------cCCCCEEEEEEEEEC
Confidence            5666433323334467789999999885 4 3589999999877543110000000         000011112235554


Q ss_pred             ecccCCCceEEEEEEEeCCc
Q psy14532         80 NVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      .- .......|+|.+.+...
T Consensus        75 ~~-~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          75 RA-EWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             HH-HHTTGGGEEEEEECTTS
T ss_pred             HH-HcCCCCEEEEEEEECCC
Confidence            44 44556789999998643

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.37  E-value=1.2e-06  Score=53.42  Aligned_cols=86  Identities=15%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .+.....+.+|++++|.|.+.|+..  ..+.|+|.  |+.+..-   ..+. ..........+..|..+..+     ..|
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl---~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L   80 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWI---GYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYL   80 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEE---EEEETTTTEEEECGGGTTCEEEEEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceee---eecCCccCccccccceeeeEEEEeccCceeEee
Confidence            3445567899999999999988643  47899984  3322100   0000 01011112223333333322     138


Q ss_pred             EEeecccCCCceEEEEEEEe
Q psy14532         77 LIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      .|.++ +.+|++.|.|....
T Consensus        81 ~m~sL-~~eDtAvYYCAr~~   99 (117)
T d1um5h1          81 ELSSL-TSEDSAVYYCARSS   99 (117)
T ss_dssp             EECSC-CGGGCEEEEEEEEE
T ss_pred             ccccc-CCCcceEEEEeecc
Confidence            89999 99999999996543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.1e-07  Score=55.31  Aligned_cols=65  Identities=25%  Similarity=0.384  Sum_probs=44.7

Q ss_pred             cceecCCcEEEEeeeCcccCceEEEEeCCcccC--------------CCcceEE------ecCCeEEEEecccCCCCcEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--------------LNRRQKV------FPNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~--------------~~~~~~~------~~~~~l~i~~~~~~~~~g~y  181 (258)
                      +...+|++++|.|.........+.|++......              ...+...      ..+.+|.|.+++. +|+|.|
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~-~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCG-GGCEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCCh-HHCEEE
Confidence            345789999999998766666899998533210              1111111      1123699999997 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999964

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.36  E-value=1.2e-06  Score=53.79  Aligned_cols=87  Identities=18%  Similarity=0.303  Sum_probs=51.4

Q ss_pred             ceeeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCccccceecc-cceeeccccccceeeeeCC-----
Q psy14532          5 LIYKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFPNG-----   74 (258)
Q Consensus         5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----   74 (258)
                      +..+.....+.+|+++.|+|.+.|+..  ..+.|+|.  |+.+.--   ..+... ........+..|..+..+.     
T Consensus         4 ll~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl---g~i~~~~~~~~ya~s~kgR~tiS~D~s~ntv   80 (122)
T d1vgeh1           4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWM---GWISAGTGNTKYSQKFRGRVTFTRDTSATTA   80 (122)
T ss_dssp             SEEECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEE---EEEETTTCCEEECGGGTTTEEEEEETTTTEE
T ss_pred             eeEecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeee---eeecCcccccccccceeEeeEEeccCCccee
Confidence            344456677899999999999988643  36899983  3222110   001100 1111122233343333321     


Q ss_pred             cEEEeecccCCCceEEEEEEE
Q psy14532         75 TLLIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.|.++ +.+|++.|.|...
T Consensus        81 yL~~~~L-~~eDtA~YYCAr~  100 (122)
T d1vgeh1          81 YMGLSSL-RPEDTAVYYCARD  100 (122)
T ss_dssp             EEEECSC-CGGGCEEEEEEEE
T ss_pred             eeccccc-CCCcceEEEEeec
Confidence            3889999 9999999999765

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.36  E-value=5.1e-06  Score=50.58  Aligned_cols=83  Identities=20%  Similarity=0.321  Sum_probs=49.4

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLIEN   80 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~   80 (258)
                      ....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+.--   ..+..+........+..|..+..+     ..|.|.+
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl---~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~   84 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWV---ASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSR   84 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEE---EEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeee---eecccccchhhccccceeEEEeccccceeeeecccc
Confidence            445678999999999999864  347899983  3322111   111111111222233334333332     2388999


Q ss_pred             cccCCCceEEEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATN   96 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~   96 (258)
                      + +.+|++.|.|.-..
T Consensus        85 l-~~eDtA~YyCAr~~   99 (118)
T d1lo4h1          85 L-RSEDTAIYYCARGT   99 (118)
T ss_dssp             C-CGGGCEEEEEEEEE
T ss_pred             c-cCCcceEEEecccC
Confidence            9 99999999997543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.8e-06  Score=50.04  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=43.7

Q ss_pred             cCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEE
Q psy14532         15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      ..|+.++|.|.+.| +|.+.|.|+++++.+......... ..          ..........|.+    ...+...|+|.
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~-~~----------~~g~y~v~S~L~v----~~~~~~~~tC~   78 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ-DP----------ETELYAVSSKLDF----NMTTNHSFMCL   78 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE-CT----------TTCCEEEEEEEEE----ETTSCEEEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEe-cC----------CCccEEEEEEEEc----cCCccceEEEE
Confidence            35788999999998 588899999998877544111000 00          0001111223333    34466899999


Q ss_pred             EEeCCcce
Q psy14532         94 ATNKQGRS  101 (258)
Q Consensus        94 ~~~~~~~~  101 (258)
                      +.+.....
T Consensus        79 V~h~~l~~   86 (95)
T d1dr9a2          79 IKYGHLRV   86 (95)
T ss_dssp             EEETTCCE
T ss_pred             EEecCCCC
Confidence            99876543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.35  E-value=1.3e-06  Score=53.87  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             eceeeeecCCCceEEEEEEeecCC----CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      +.....+.+|++++|.|.+.|+..    ..+.|+|.  |+.+..-   ..+...........+..|..+..+     ..|
T Consensus         6 esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i---~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L   82 (123)
T d1r0ah1           6 ESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWL---ATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFL   82 (123)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEE---EEEETTSCCEECTTTGGGEEEEEEGGGTEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEee---eeecCCccccccceeeEEEEccccccceeEEc
Confidence            334456789999999999887532    25789973  3322110   001111111112223333333222     248


Q ss_pred             EEeecccCCCceEEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.++ +.+|++.|.|...
T Consensus        83 ~i~sl-~~eDsAvYyCAr~  100 (123)
T d1r0ah1          83 NMMTV-ETADTAIYYCAQS  100 (123)
T ss_dssp             EECSC-CGGGCEEEEEEEE
T ss_pred             ceeec-ccccceEEeeccc
Confidence            89999 9999999999744

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.35  E-value=2.3e-06  Score=53.05  Aligned_cols=70  Identities=20%  Similarity=0.314  Sum_probs=47.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--ccC------------CCcceEEe-----cCCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QLP------------LNRRQKVF-----PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~~------------~~~~~~~~-----~~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|++++|.|.........+.|++...  ...            ...+....     ...+|.|.++.. +|+|
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~-~Dsg   85 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL-SDSA   85 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG-GGCS
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh-hhCc
Confidence            456778899999999998765566899998431  111            00111111     112599999997 9999


Q ss_pred             EEEEEEEeCC
Q psy14532        180 VYWCTATNKQ  189 (258)
Q Consensus       180 ~y~C~~~~~~  189 (258)
                      .|.|.+....
T Consensus        86 ~Y~Ca~~~~~   95 (114)
T d2cdea1          86 SYICVVSDRG   95 (114)
T ss_dssp             EEEEEEECSC
T ss_pred             ccceeeecCC
Confidence            9999998753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.35  E-value=2.4e-06  Score=51.17  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc---E
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT---L   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l   76 (258)
                      +|.+...+.. ....++..+|.|.+.++ | ...|.|.++|..+..........                ...+++   +
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~----------------~~~dgtf~~~   66 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLI----------------QNGDWTFQTL   66 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCE----------------ECSSSCEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEE----------------eCCCcEEEEE
Confidence            4666543332 34457788999999985 3 34899999998876542111110                011222   2


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+.+.|+|.+.+...
T Consensus        67 s~l~~-~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          67 VMLET-VPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             EEEEC-CCCTTCEEEEEEECTTC
T ss_pred             EEeeE-cCCCCCEEEEEEEECCC
Confidence            34456 66788899999998654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.35  E-value=2.5e-06  Score=51.17  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE--
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL--   76 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--   76 (258)
                      .+|.+...+. ..+..|+..+|.|.+.++ | ...|+|.++|..+...........                ..+++.  
T Consensus         4 ~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~----------------~~dgtf~~   66 (99)
T d1uvqa1           4 EVPEVTVFSK-SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLS----------------KSDHSFFK   66 (99)
T ss_dssp             CCCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEE----------------CTTSCEEE
T ss_pred             cCCEEEEEcC-CcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEE----------------CCCCCEEE
Confidence            3677755432 235678899999999996 3 448999999987754311111100                112221  


Q ss_pred             -EEeecccCCCceEEEEEEEeCC
Q psy14532         77 -LIENVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        77 -~i~~~~~~~d~G~Y~C~~~~~~   98 (258)
                       ....+ ...+...|+|.+.+..
T Consensus        67 ~s~l~v-~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          67 ISYLTF-LPSADEIYDCKVEHWG   88 (99)
T ss_dssp             EEEEEE-CCCTTCCEEEEEECTT
T ss_pred             EEEEEE-cCCCCCEEEEEEEeCC
Confidence             12334 4456678999999864

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.6e-06  Score=50.53  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc---E
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT---L   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l   76 (258)
                      ||.+....    ...++.++|.|.+.++ | ...+.|.++|+.+............               ..+++   .
T Consensus         4 pP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~---------------~~~~t~~~~   64 (94)
T d1de4a1           4 PPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLP---------------NGDGTYQGW   64 (94)
T ss_dssp             CCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEE---------------CTTSCEEEE
T ss_pred             CCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEe---------------CCCceEEEE
Confidence            56664321    2356789999999995 4 4489999999987543111111000               11222   2


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+.+.|+|.+.+...
T Consensus        65 s~l~v-~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          65 ITLAV-PPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             EEEEE-CTTCGGGEEEEEECTTS
T ss_pred             EEEEE-CCCCCCEEEEEEEeCCC
Confidence            23445 55677789999998643

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=3.8e-06  Score=47.06  Aligned_cols=89  Identities=19%  Similarity=0.288  Sum_probs=56.5

Q ss_pred             ceeeeecCCCceEEEEEEeec-CCCeEEEee-CCE---eCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN-PTPHISWKL-DGY---PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK   83 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~   83 (258)
                      .....+..|+...|.|.+..- -.|+++|-| +++   ++.........+.....            ..-..|.+..+ .
T Consensus        10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~n------------is~FvLhF~pv-l   76 (104)
T d1xaua_          10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS------------VPVFVLHFKPI-H   76 (104)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSS------------SCEEEEEETTC-C
T ss_pred             cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCC------------eeEEEEEeeee-e
Confidence            345568899999999999763 467999987 332   33322111111111000            00114677788 8


Q ss_pred             CCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532         84 DHDRGVYWCTATNKQGRSSSQNVHISV  110 (258)
Q Consensus        84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v  110 (258)
                      .+|.|.|+|.+....+...+.++.+.|
T Consensus        77 ~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          77 LSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ecCCCceEEecCCChhheecceEEEEe
Confidence            999999999998887777666666655

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.33  E-value=6.9e-07  Score=54.92  Aligned_cols=84  Identities=17%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             eceeeeecCCCceEEEEEEeecCC----CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      +.....+.+|++++|.|.+.|+..    ..+.|+|.  |+.+.--   ..+...........+..|..+..+     ..|
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl---~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L   82 (120)
T d1ai1h1           6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWM---GRICYEGSIYYSPSIKSRSTISRDTSLNKFFI   82 (120)
T ss_dssp             EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEE---EEEETTSCEEECHHHHTTEEEEEETTTTEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceee---eecccccchhhchhhcccceeccccccceeec
Confidence            334566899999999999988632    25789883  3322110   001111111111222333333332     238


Q ss_pred             EEeecccCCCceEEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.++ +.+|++.|.|.-.
T Consensus        83 ~~~sL-~~eDtAvYYCAr~  100 (120)
T d1ai1h1          83 QLISV-TNEDTAMYYCSRE  100 (120)
T ss_dssp             EESSC-CGGGCEEEEEEEE
T ss_pred             ceeee-eccceeEEEEEec
Confidence            89999 9999999999644

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.33  E-value=1.3e-06  Score=53.03  Aligned_cols=85  Identities=19%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeCC-----cEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPNG-----TLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~l~   77 (258)
                      +.....+.+|+++.|.|.+.|..  ...+.|+|.  |+.+..-   ..+. ..........+..|..+..+.     .|.
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewv---g~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~   82 (117)
T d1jpth1           6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWV---GLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQ   82 (117)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEE---EEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEee---eecccccccccccccceeeEEEEeccccceEEec
Confidence            33456789999999999999864  347899984  3322110   0110 011112223344444444332     378


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      +.++ +.+|++.|.|.-..
T Consensus        83 m~~L-~~eDTAvYYCAr~~  100 (117)
T d1jpth1          83 MNSL-RAEDTAVYYCARDT  100 (117)
T ss_dssp             ECSC-CGGGCEEEEEEEEC
T ss_pred             cccc-CCCCceEEEEeecC
Confidence            9999 99999999996543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.4e-06  Score=52.42  Aligned_cols=64  Identities=19%  Similarity=0.325  Sum_probs=42.9

Q ss_pred             ecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcce--EEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        125 IAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQ--KVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~--~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..|+.++|.|.+.|+ | ...|+|.++|..+......  ....++++.+.   .+.. .+.+.|+|++.+..
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~-~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTP-TETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECC-CSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecC-cCCCEEEEEEEeCC
Confidence            467889999999884 5 3489999999877644322  22344443222   3344 56679999999864

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.32  E-value=1.5e-06  Score=53.02  Aligned_cols=84  Identities=12%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .+.....+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewl---g~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L   81 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWI---GLISTYSGYTNYNQKFKGKATMTVDKSSSTAYM   81 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEE---EEECTTTCCEEECGGGBTTEEEEEEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccc---cccCCcCCcchhhhhhcccEEEecccCcceEee
Confidence            3445567899999999999988643  37899983  3322110   0000 00111112223333333322     238


Q ss_pred             EEeecccCCCceEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~   94 (258)
                      .|.++ +.+|++.|.|.-
T Consensus        82 ~~~sL-~~eDTAvYYCAr   98 (118)
T d2jelh1          82 ELARL-TSEDSAIYYCAR   98 (118)
T ss_dssp             EECSC-CGGGCEEEEEEE
T ss_pred             ccccc-ccCcceeeeEEE
Confidence            89999 999999999953

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.32  E-value=1.7e-06  Score=53.70  Aligned_cols=87  Identities=18%  Similarity=0.286  Sum_probs=52.0

Q ss_pred             eeeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----Cc
Q psy14532          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GT   75 (258)
Q Consensus         6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~   75 (258)
                      ..+.....+.+|+++.|+|.+.|+.  ...+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi---g~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~   79 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWM---GGIIPIFGTSNYAQKFRGRVTFTADQATSTAY   79 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEE---EEEEGGGTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEE---eecCCcccccccccceeeeeEEeccCCccEEE
Confidence            4455566789999999999999853  347899983  3322111   1110 11111222333344333332     13


Q ss_pred             EEEeecccCCCceEEEEEEEe
Q psy14532         76 LLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        76 l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.|.++ +.+|++.|.|.-..
T Consensus        80 L~~~~L-~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          80 MELTNL-RSDDTAVYYCARDF   99 (130)
T ss_dssp             EEECSC-CGGGCEEEEEEEEC
T ss_pred             EEeecc-CCCCcEEEEEEeec
Confidence            788999 99999999997653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=1.5e-06  Score=52.96  Aligned_cols=83  Identities=19%  Similarity=0.265  Sum_probs=48.2

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|.
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv---g~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~   82 (118)
T d1nlbh1           6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWM---GWVNTETGEPTYADDFKGRFAFSLETSASTAYLQ   82 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceee---eecCcccccchhhhheeeeeEEEecCCceeEEee
Confidence            44456689999999999998854  347899983  3322110   0000 00011112223333333322     2378


Q ss_pred             EeecccCCCceEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTA   94 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~   94 (258)
                      |.++ +.+|++.|.|.-
T Consensus        83 ~~~L-~~eDtAvYYCAr   98 (118)
T d1nlbh1          83 INSL-KNEDTATYFCAR   98 (118)
T ss_dssp             ECSC-CGGGCEEEEEEE
T ss_pred             eeec-ccCcceEEEEee
Confidence            9999 999999999953

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.31  E-value=2.2e-06  Score=52.17  Aligned_cols=84  Identities=18%  Similarity=0.269  Sum_probs=49.4

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.++|+.  ...+.|+|.  |+.+..-   ..+. ..........+..|..+..+     ..|.
T Consensus         6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewv---g~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq   82 (117)
T d1jnhb1           6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWI---AAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQ   82 (117)
T ss_dssp             ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEE---EEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceee---eccCccccccccccceeEEEEEeccCccceeeec
Confidence            33455678999999999999864  347899983  3322110   0111 11111122233334333332     2378


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        83 ~~~L-~~eDTAvYYCAr~   99 (117)
T d1jnhb1          83 LNSL-TSEDSAVYSCSRG   99 (117)
T ss_dssp             ECSC-CGGGCEEEEEEEE
T ss_pred             cccc-CCCcceEEEEeec
Confidence            9999 9999999999653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.2e-07  Score=52.85  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=56.6

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce--EEecCCeEEEEecccCCCCcEEEEEEEeCC-
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ--KVFPNGTLLIENVQKDHDRGVYWCTATNKQ-  189 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-  189 (258)
                      +|.+...+...+..|++|+|.|... .+...+.+++++.........  .......+.|.++.. .|+|.|+|...... 
T Consensus         4 kP~Lsa~Ps~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~-~~~G~Y~C~y~~~~~   81 (96)
T d1ugna1           4 KPTLWAEPGSVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITW-EHTGRYRCYYGSDTA   81 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCG-GGCEEEEEEEEETTT
T ss_pred             CCEEEeECCCccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCH-HHCCeEEEEEeCCCC
Confidence            4444444556688999999999864 344578888887643211110  111345799999998 99999999876432 


Q ss_pred             -CCCccceEEEEee
Q psy14532        190 -GRSSSQNVHISVT  202 (258)
Q Consensus       190 -~~~~~~~~~l~v~  202 (258)
                       -+..+..+.|.|.
T Consensus        82 ~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          82 GRSESSDPLELVVT   95 (96)
T ss_dssp             EECCCCCCEEEEEE
T ss_pred             CccccCCCEEEEEe
Confidence             1244566666553

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.31  E-value=6.6e-07  Score=53.69  Aligned_cols=79  Identities=19%  Similarity=0.282  Sum_probs=45.3

Q ss_pred             eecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEEeeccc
Q psy14532         13 TLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLIENVQK   83 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~~   83 (258)
                      .+.+|+++.|.|.+.++  ....+.|+|.  |+.+..-   ..+...........+..|..+..+     ..|.|.++ +
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi---~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l-~   79 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELV---ATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSL-E   79 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEE---EEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSC-C
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeee---eeeeeccccccccccccceEEecCCceeEEEEeecCC-C
Confidence            46899999999999875  3446889984  3322111   001101111112233334333332     23889999 9


Q ss_pred             CCCceEEEEEEE
Q psy14532         84 DHDRGVYWCTAT   95 (258)
Q Consensus        84 ~~d~G~Y~C~~~   95 (258)
                      .+|++.|.|...
T Consensus        80 ~eDtAvYyCA~~   91 (107)
T d1sjva_          80 PEDTAVYYCYTH   91 (107)
T ss_dssp             GGGCSEEEEEEC
T ss_pred             cccceeeeEecc
Confidence            999999999654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.31  E-value=1.7e-06  Score=53.20  Aligned_cols=84  Identities=17%  Similarity=0.318  Sum_probs=48.6

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|++++|+|.+.+..  ...+.|+|.  |+.+..-   ..+. ..........+..|..+..+     ..|.
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl---~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~   82 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWI---GLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIE   82 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEe---eecCccccchhhhHHhhhcceeeeccCcceEEcc
Confidence            33445688999999999998753  346899984  3322110   0000 00011112222333333221     2388


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        83 i~~l-~~eDtA~YYCAr~   99 (120)
T d1pg7x1          83 LVRL-TSNDSAVYYCARE   99 (120)
T ss_dssp             ECSC-CGGGCEEEEEEEE
T ss_pred             cccc-CCCcceEEEeeec
Confidence            9999 9999999999754

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.8e-06  Score=49.92  Aligned_cols=81  Identities=19%  Similarity=0.304  Sum_probs=48.1

Q ss_pred             CCCcceeeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .||.+.....   ...|+.++|.|.+.++ |. ..|.|.++|..+...........+           .....   ....
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~-----------~~t~~---~~s~   64 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNG-----------NGTYQ---SWVV   64 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETT-----------TTEEE---EEEE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCC-----------CCeEE---EEEE
Confidence            3787765332   2357899999999995 43 489999999876543111100000           00000   1223


Q ss_pred             eecccCCCceEEEEEEEeCCc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ..+ ...+...|+|.+.+...
T Consensus        65 l~~-~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          65 VAV-PPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             EEE-CTTCCSCEEEEEEETTC
T ss_pred             eEe-CCCCCCEEEEEEEECCC
Confidence            444 55567789999998754

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.30  E-value=9.2e-07  Score=54.12  Aligned_cols=88  Identities=18%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             eeceeeeecCCCceEEEEEEeecCCC--eEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCC-----cEE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPTP--HISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-----TLL   77 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~   77 (258)
                      .+.....+.+|+++.|+|.+.|+...  .+.|+|.  |+.+..-.......-+........+..|..+..+.     .|.
T Consensus         5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~   84 (121)
T d1nfdf1           5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ   84 (121)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence            34455678999999999999986433  6789983  33221100000000000011112233333333322     388


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        85 ~~~L-~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRL-RVDDTAIYYCTRA  101 (121)
T ss_dssp             EESC-CGGGCEECEEEEE
T ss_pred             eccc-CCCcceEEEEecc
Confidence            9999 9999999999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.29  E-value=1.7e-06  Score=53.12  Aligned_cols=87  Identities=17%  Similarity=0.266  Sum_probs=49.5

Q ss_pred             ceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCC-----cEEEe
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-----TLLIE   79 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~i~   79 (258)
                      .....+.+|+++.|.|.+.+...  ..+.|+|.  |+.+..-.......-+........+..|..+..+.     .|.|.
T Consensus         7 sg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   86 (122)
T d1q9rb1           7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (122)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence            34456889999999999988643  36899973  33221110000000000011122333444443322     38899


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      ++ +.+|++.|.|....
T Consensus        87 sL-~~eDTAvYYCar~~  102 (122)
T d1q9rb1          87 TL-RAEDSATYYCARDH  102 (122)
T ss_dssp             SC-CGGGCEEEEEEECC
T ss_pred             ee-ccCcceEEEEEecC
Confidence            99 99999999997643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-06  Score=52.85  Aligned_cols=65  Identities=15%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             eecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCc--ceEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNR--RQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ...|+.++|.|.+.|+ | ...++|.+||..+....  ......++++.+.   .+.. ++.+.|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTP-TEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECC-CSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECC-CCCCEEEEEEEeCC
Confidence            3567889999999984 5 34899999998775332  2233445554332   3333 56779999999864

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.28  E-value=4.8e-06  Score=50.88  Aligned_cols=84  Identities=20%  Similarity=0.337  Sum_probs=49.1

Q ss_pred             eceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv---~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLq   82 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWM---GLIDPEDADTMYAEKFRGRVTITADTSTDTGYLE   82 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeee---eecCCcccccccccceeeeEEEecccCceEEEee
Confidence            344566789999999999998643  37899983  3222110   0000 01111112223334333322     1378


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        83 m~sL-~~eDTAvYYCAr~   99 (119)
T d1rz7h1          83 LSSL-RSEDTAVYYCAAD   99 (119)
T ss_dssp             ECSC-CGGGCEEEEEEEC
T ss_pred             eecc-CcccceEEEEeec
Confidence            9999 9999999999654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.28  E-value=2.3e-06  Score=52.83  Aligned_cols=84  Identities=17%  Similarity=0.289  Sum_probs=50.7

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .+.....+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+.--   ..+. .+........+..|..+..+     ..|
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~---g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL   81 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWM---GWINPYNGNKEFSAKFQDRVTFTADTSANTAYM   81 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE---EEECTTTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceee---eecCccccccccchhccccceEecccCceEEEE
Confidence            4556677899999999999998543  36899983  3322110   0000 01111222333444444433     237


Q ss_pred             EEeecccCCCceEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~   94 (258)
                      .|.++ +.+|++.|.|.-
T Consensus        82 ~~~~L-~~eDtAvYYCAR   98 (127)
T d1n0xh1          82 ELRSL-RSADTAVYYCAR   98 (127)
T ss_dssp             EECSC-CGGGCEEEEEEE
T ss_pred             EEEcc-CCCCceEEEEEe
Confidence            89999 999999999963

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.28  E-value=4.5e-06  Score=51.80  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=57.8

Q ss_pred             ceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      .....+.+|+++.|+|.+.|+.  ...+.|+|.  |+.+.--   ..+. .+........+..|..+..+     ..|.|
T Consensus         7 SG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWl---g~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i   83 (135)
T d1ieha_           7 SGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWV---STINPGDGSTYYADSVKGRFTISRDNAKNTLYLQM   83 (135)
T ss_dssp             ECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEE---EEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEE
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeee---eccCCccccccccccceEeEEEeccCCCceeEecE
Confidence            3445688999999999999864  346899973  3332211   0110 01111222334444444433     23889


Q ss_pred             eecccCCCceEEEEEEEeCCcce-eeceEEEEEecC
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA  113 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~  113 (258)
                      .++ +.+|++.|.|.-....... -..-..|+|...
T Consensus        84 ~~L-~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSa  118 (135)
T d1ieha_          84 NSL-KSEDTAVYYCAKYSGGALDAWGQGTQVTVSSQ  118 (135)
T ss_dssp             ESC-CSSSCEEEEEEEBSSSSBCCCSCCEEEEECSS
T ss_pred             eee-CcccceeeEEEEecCCccceeCCCEEEEEECC
Confidence            999 9999999999754332211 124456666543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.28  E-value=6.9e-06  Score=49.72  Aligned_cols=85  Identities=18%  Similarity=0.292  Sum_probs=50.0

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .+.....+.+|+++.|+|.+.|+..  ..+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~---g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL   81 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWI---GNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYM   81 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeee---eecCccccccccccccceeeeEecccccceeEe
Confidence            3455677899999999999998643  36889983  3322111   0111 00111112223333333322     237


Q ss_pred             EEeecccCCCceEEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .+.++ +.+|++.|.|.-.
T Consensus        82 ~~~sL-~~eDtAvYYCAr~   99 (116)
T d1mjuh1          82 QLSSL-TSDDSAVYYCANK   99 (116)
T ss_dssp             EECSC-CGGGCEEEEEEEE
T ss_pred             ccccc-CCCCceEEEEccc
Confidence            88999 9999999999643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.26  E-value=5e-06  Score=49.86  Aligned_cols=65  Identities=20%  Similarity=0.279  Sum_probs=43.2

Q ss_pred             eecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      +..|+.++|.|.+.|+ | ...++|.++|..+..+..   .....++++.+.   .+.. .+.+.|+|+|.+..
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~-~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP-SDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC-CTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC-CCCCEEEEEEEECC
Confidence            4567889999999985 4 458999999988764321   112334443222   3333 56778999999864

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.26  E-value=2.9e-06  Score=51.75  Aligned_cols=84  Identities=19%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceec-ccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .++....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+.--   ..+.. .........+..|..+..+     ..|
T Consensus         5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl---~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L   81 (117)
T d1mfah1           5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWI---GAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYM   81 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEE---EEEETTTTEEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceee---EccCcccccccccccceeeEEEEcccCccEeEe
Confidence            345566789999999999999853  346889873  3322111   00000 0111112223333333222     238


Q ss_pred             EEeecccCCCceEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~   94 (258)
                      .|.++ +.+|++.|.|.-
T Consensus        82 ~i~~L-~~eDtAvYYCAr   98 (117)
T d1mfah1          82 ELSSL-TSEDSAVYYCTR   98 (117)
T ss_dssp             EECSC-CGGGCEEEEEEE
T ss_pred             eeccc-CCCcceEEEEec
Confidence            89999 999999999964

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.26  E-value=2.5e-06  Score=52.85  Aligned_cols=85  Identities=14%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .+.....+.+|++++|.|.+.|+..  ..+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl---g~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL   81 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWI---GYIDPATAYTESNQKFKDKAILTADRSSNTAFM   81 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceee---eecCCccccccccccceeeeEEecccCcceEee
Confidence            4455667899999999999988543  36899983  3322111   0000 00111112223333333322     237


Q ss_pred             EEeecccCCCceEEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.++ +.+|++.|.|.-.
T Consensus        82 ~l~sL-~~eDtAvYYCAR~   99 (125)
T d1rihh1          82 YLNSL-TSEDSAVYYCARE   99 (125)
T ss_dssp             EECSC-CGGGCEEEEEEEE
T ss_pred             eeecc-CcccceEEEEeee
Confidence            89999 9999999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.26  E-value=2.9e-06  Score=53.17  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             eeeeecCCCceEEEEEEeecCC----CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      ....+++|+++.|.|.+.++..    ..+.|+|.  ++.+..-   ..+...........+..|..+..+     ..|.|
T Consensus         8 g~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l---~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i   84 (132)
T d1tjgh1           8 GPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWL---AIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVM   84 (132)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEE---EEEETTSCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             CCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEE---EEecCCCccEeeeeeeecceecccccccEEEccc
Confidence            3466889999999999987532    25889973  3222111   000001111111222333333222     23889


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ +.+|++.|.|....
T Consensus        85 ~~l-~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          85 TRV-SPVDTATYFCAHRR  101 (132)
T ss_dssp             CSC-CGGGCEEEEEEEEC
T ss_pred             ccC-CcccceEEEEEEec
Confidence            999 99999999997553

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.25  E-value=3.2e-06  Score=52.60  Aligned_cols=82  Identities=23%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             eeeeecCCCceEEEEEEeecCC----CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      ....+.+|++++|.|.+.|...    ..+.|+|.  |+.+..-   ..+..+........+..|..+..+     ..|.|
T Consensus         8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l---~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i   84 (126)
T d1etzb1           8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWL---ADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKI   84 (126)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEE---EEEETTCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEe---eecCCCCCceeceeeeEeeEEecccCCcEEEcce
Confidence            3456889999999999887422    25679873  3322110   111111111122223333333322     24889


Q ss_pred             eecccCCCceEEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~   95 (258)
                      .++ +.+|++.|.|...
T Consensus        85 ~~l-~~eDtAvYyCAr~  100 (126)
T d1etzb1          85 TSV-DTSDTATYHCARR  100 (126)
T ss_dssp             CSC-CGGGCEEEEEEEE
T ss_pred             ecc-cccccceEEEEEe
Confidence            999 9999999999743

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.25  E-value=3.5e-06  Score=51.96  Aligned_cols=83  Identities=18%  Similarity=0.322  Sum_probs=49.3

Q ss_pred             eceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+.--   ..+. .+........+..|..+..+     ..|.
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv---g~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~   81 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWI---GKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQ   81 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEE---EEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceee---eecCccccchhhhhhhccceEEEecCCccEEEee
Confidence            445567899999999999998643  36889983  3322110   0011 01111122233344333322     2378


Q ss_pred             EeecccCCCceEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTA   94 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~   94 (258)
                      |.++ +.+|++.|.|.-
T Consensus        82 m~~L-~~eDTAvYYCAr   97 (126)
T d1lmka1          82 LSSL-TSEDSAVYYCAR   97 (126)
T ss_dssp             ECSC-CGGGCEEEEEEE
T ss_pred             eccc-CCCcceEEEEee
Confidence            9999 999999999964

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.2e-06  Score=54.59  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             cCCCcceecCCcEEEEeeeCcc---cCceEEEEeCCccc--------------CCCcceEEec-----CCeEEEEecccC
Q psy14532        118 PMGNVSAIAGEPLYLGCPVAGY---PIESITWQKGVQQL--------------PLNRRQKVFP-----NGTLLIENVQKD  175 (258)
Q Consensus       118 ~~~~~~~~~g~~~~l~C~~~~~---~~~~i~W~~~~~~~--------------~~~~~~~~~~-----~~~l~i~~~~~~  175 (258)
                      .+..+.+.+|++|+|.|.....   ....+.|++....-              ....+..+..     ..+|.|.+++. 
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~-   83 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ-   83 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc-
Confidence            3456778899999999987432   23467898743111              0111222211     12699999998 


Q ss_pred             CCCcEEEEEEEeCCCCCccceEEEEeecC
Q psy14532        176 HDRGVYWCTATNKQGRSSSQNVHISVTVP  204 (258)
Q Consensus       176 ~~~g~y~C~~~~~~~~~~~~~~~l~v~~~  204 (258)
                      +|+|.|.|.+..... .....+.|.|...
T Consensus        84 ~DsG~Y~C~v~~~~~-~~~~~v~L~V~~~  111 (116)
T d1xeda_          84 DDSGRYKCGLGINSR-GLSFDVSLEVLEH  111 (116)
T ss_dssp             GGCEEEEEEESCGGG-CCEEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCC-CceEeEEEEEECC
Confidence            999999999865432 2334466666543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.24  E-value=2.8e-06  Score=51.93  Aligned_cols=83  Identities=16%  Similarity=0.263  Sum_probs=47.7

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|.
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl---~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~   82 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWI---GYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQ   82 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEE---EEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceee---eecCCcccchhhhhhhhcceEEEcccCcceEEee
Confidence            34456678999999999999864  336899983  3322100   0000 00011111222333333222     2488


Q ss_pred             EeecccCCCceEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTA   94 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~   94 (258)
                      |.++ +.+|++.|.|..
T Consensus        83 ~~sL-~~eDTAvYYCAr   98 (119)
T d1eapb1          83 LNSL-TSEDSAVYFCKR   98 (119)
T ss_dssp             ECSC-CGGGCEEEEEEE
T ss_pred             eecc-cCCcceEEEEEE
Confidence            9999 999999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.24  E-value=2.8e-06  Score=52.52  Aligned_cols=84  Identities=20%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             eceeeeecCCCceEEEEEEeecCC---CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT---PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.+...   ..+.|+|.  |+.+.--   ..+...........+..|..+..+     ..|.
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl---~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~   82 (127)
T d3cx5j1           6 ESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWV---GYISNVGDNNYNPSLKDRLSITRDTSKNQFFLK   82 (127)
T ss_dssp             EEECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEE---EEEETTSCEEECTTTTTTBCCEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchhee---eeecccccchhcccccccceeecccccceeecc
Confidence            334456789999999999998643   36889983  4332111   111111111122223333333322     2388


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        83 l~~l-~~eDtAvYyCAr~   99 (127)
T d3cx5j1          83 LNSV-TTEDTATYYCARS   99 (127)
T ss_dssp             ECSC-CGGGCEEEEEEEE
T ss_pred             eecc-ccccceEEEeeee
Confidence            9999 9999999999743

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.24  E-value=2.1e-06  Score=53.39  Aligned_cols=86  Identities=21%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             ceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEEe
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      .....+++|++++|.|.+.+...  ..+.|+|.  |+.+..-........+........+..|..+..+     ..|.|.
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~   86 (131)
T d3c2ah1           7 SGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMN   86 (131)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeeccee
Confidence            34456899999999999987533  47899983  3322110000000000111112233334434332     238899


Q ss_pred             ecccCCCceEEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTAT   95 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~   95 (258)
                      ++ +.+|++.|.|...
T Consensus        87 ~L-~~eDTAvYYCAR~  101 (131)
T d3c2ah1          87 SL-KTEDTAVYSCTTD  101 (131)
T ss_dssp             SC-CGGGCEEEEEEEE
T ss_pred             cc-ccCCceEEEEecc
Confidence            99 9999999999754

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.3e-06  Score=53.61  Aligned_cols=46  Identities=22%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCCcce-eeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          1 SHPQLI-YKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         1 ~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      .||.+. ..+....+..++.++|.|.+.++ | ...|.|+++|+.+...
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~   51 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE   51 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCC
Confidence            367774 34444456678999999999985 4 3389999999887654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=3.4e-06  Score=52.67  Aligned_cols=82  Identities=21%  Similarity=0.353  Sum_probs=49.3

Q ss_pred             CCCcceecCCcEEEEeeeCc----ccCceEEEEeCCc--cc------------------CCCcceEEe-----cCCeEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG----YPIESITWQKGVQ--QL------------------PLNRRQKVF-----PNGTLLI  169 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~----~~~~~i~W~~~~~--~~------------------~~~~~~~~~-----~~~~l~i  169 (258)
                      +..+.+..|++++|.|.+..    .....+.|++...  ..                  ....+..+.     .+.+|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            44567889999999998642    1234799987321  10                  011122221     1236999


Q ss_pred             EecccCCCCcEEEEEEEeCCCC-CccceEEEEe
Q psy14532        170 ENVQKDHDRGVYWCTATNKQGR-SSSQNVHISV  201 (258)
Q Consensus       170 ~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v  201 (258)
                      .+++. .|+|.|.|.+.+..+. .....+.|.|
T Consensus        86 ~~v~~-~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          86 HNLDY-SDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CSCCG-GGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CCCCh-HHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            99998 9999999999875432 2233455555

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.24  E-value=2.5e-06  Score=52.57  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             eeceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeCC-----cE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPNG-----TL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~l   76 (258)
                      .+.....+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+..-   ..+. ..........+..|..+..+.     .|
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi---g~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL   81 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWM---GIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHL   81 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEEETTTTEEEECTTTTTTCEEEEETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeee---eecCcccccccccccceeeEEEeecCCCcEEEE
Confidence            3445567899999999999998643  36899983  3322111   0111 011112222333443333322     37


Q ss_pred             EEeecccCCCceEEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.++ +.+|++.|.|.-.
T Consensus        82 ~~~~L-~~eDTA~YYCAR~   99 (124)
T d2b1hh1          82 QWSSL-KPSDTALYYCARL   99 (124)
T ss_dssp             EESSC-CGGGCEEEEEEEE
T ss_pred             eeecc-ccccceEEEEeec
Confidence            89999 9999999999543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.23  E-value=2.7e-06  Score=52.26  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             ceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      .....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.|
T Consensus         7 sG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl---~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i   83 (123)
T d1mqkh_           7 SGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWV---ASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQM   83 (123)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEE---EEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeee---eecCccccccccchhccEEEEEEecCcccccccce
Confidence            3445688999999999998854  336899983  3322110   0000 01111112223333333322     23889


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|++.|.|.....
T Consensus        84 ~~L-~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          84 SSL-KSEDTAMYYCVRHEY  101 (123)
T ss_dssp             CSC-CGGGCEEEEEEEEET
T ss_pred             eee-ccCcccceeEEecCC
Confidence            999 999999999975543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.23  E-value=4e-06  Score=51.77  Aligned_cols=85  Identities=20%  Similarity=0.339  Sum_probs=51.2

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|+|.+.+..  ...+.|+|.  |+.+.--   ..+. .+........+..|..+..+     ..|.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~---g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~   82 (127)
T d2fx7h1           6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWM---GGVIPLLTITNYAPRFQGRITITADRSTSTAYLE   82 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEE---EEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceee---eccCcccccccccceeeeeEEEeccCccceEeee
Confidence            34445678999999999999853  346899973  3322211   1111 11112223334444444433     2388


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.++ +.+|++.|.|.-..
T Consensus        83 ~~sL-~~eDTavYYCAR~~  100 (127)
T d2fx7h1          83 LNSL-RPEDTAVYYCAREG  100 (127)
T ss_dssp             ECSC-CGGGCEEEEEEEEE
T ss_pred             eccc-CcccceEEEEeecc
Confidence            9999 99999999997553

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4e-06  Score=50.70  Aligned_cols=86  Identities=17%  Similarity=0.288  Sum_probs=48.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+..-+.......++.++|.|.+.++ | ...|.|+++|+.+............          ..........|.|.
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~----------~dgtys~~S~L~v~   74 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQ----------SNNKYMASSYLTLT   74 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC----------TTSCEEEEEEEEEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEc----------CCCCEEEEEEEEEC
Confidence            5666443322222346679999999986 3 3489999999876543211111000          00011112235555


Q ss_pred             ecccCCCceEEEEEEEeCC
Q psy14532         80 NVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~   98 (258)
                      .- .......|+|.+.+..
T Consensus        75 ~~-~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          75 AR-AWERHSSYSCQVTHEG   92 (102)
T ss_dssp             HH-HHTTCCEEEEEEEETT
T ss_pred             HH-HhCCCCEEEEEEEECC
Confidence            44 4455679999999865

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.23  E-value=2.7e-06  Score=52.34  Aligned_cols=85  Identities=16%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceec-ccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|++++|.|.+.|..  ...+.|+|.  |+.+..-   ..+.. .........+..|..+..+     ..|.
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l---~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~   82 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI---GRIDPANGNSKYVPKFQGKATITADTSSNTAYLQ   82 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEE---EEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccc---cccCCcCCccccchhhccceEEEeecCCceeeec
Confidence            44556689999999999998753  347899983  3322110   01110 1111111223333333221     2388


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.++ +.+|++.|.|....
T Consensus        83 i~~L-~~eDtAvYYCAr~~  100 (121)
T d1j05b_          83 LTSL-TSEDTAVYYCAPFG  100 (121)
T ss_dssp             ECSC-CGGGCEEEEEEEEB
T ss_pred             cccc-CcCcceEEEeEeec
Confidence            9999 99999999997543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.23  E-value=6.6e-06  Score=50.15  Aligned_cols=85  Identities=20%  Similarity=0.291  Sum_probs=50.2

Q ss_pred             ceeeeecCCCceEEEEEEeecCCC--eEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeCC-----cEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTP--HISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPNG-----TLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~l~i   78 (258)
                      .....+.+|+++.|.|.+.|+...  .+.|+|.  |+.+.--   ..+. .+........+..|..+..+.     .|.|
T Consensus         7 SG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv---~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~   83 (118)
T d2fbjh1           7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWI---GEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQM   83 (118)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEE
T ss_pred             ECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeee---eecCcccccccccccceeeEEEeecCccceeeccc
Confidence            344568899999999999986433  6889973  3322111   0000 001111122333443343322     3889


Q ss_pred             eecccCCCceEEEEEEEeC
Q psy14532         79 ENVQKDHDRGVYWCTATNK   97 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~   97 (258)
                      .++ +.+|++.|.|.....
T Consensus        84 ~sL-~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          84 SKV-RSEDTALYYCARLHY  101 (118)
T ss_dssp             CSC-CGGGCEEEEEEEEET
T ss_pred             ccc-CCCcceEEEeeEecC
Confidence            999 999999999976543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.22  E-value=3.6e-06  Score=51.35  Aligned_cols=84  Identities=17%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             eceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCccccceec-ccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+++|+++.|.|.+.++..  ..+.|.|.  |+.+..-   ..+.. +........+..|..+..+     ..|.
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwv---g~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~   82 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWI---GWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYME   82 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEE---EEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceee---eecCCcccceeeccceeeeEEEEecCcceEEecc
Confidence            444566899999999999998643  37889873  3322111   11110 0111222333444433332     2378


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        83 m~~L-~~eDTAvYYCAr~   99 (120)
T d1ad9b1          83 LSSL-RSEDTAFYFCARE   99 (120)
T ss_dssp             ECSC-CGGGCEEEEEEEE
T ss_pred             cccc-CCCcceEEEEEEc
Confidence            9999 9999999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.22  E-value=3.8e-06  Score=51.57  Aligned_cols=84  Identities=20%  Similarity=0.304  Sum_probs=49.6

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.++.  ...+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|.
T Consensus         6 esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewl---g~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~   82 (121)
T d1ol0a_           6 ESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIV---SAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQ   82 (121)
T ss_dssp             EEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE---EEECTTSCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeee---eecCCcccccccchheeeeeEEeccccceeEEee
Confidence            33445678999999999998753  346899984  3322110   0000 00111112233334444332     2488


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|...
T Consensus        83 i~sL-~~eDtAvYYCAr~   99 (121)
T d1ol0a_          83 MNSL-RAEDTAVYYCARE   99 (121)
T ss_dssp             ECSC-CGGGCEEEEEEEC
T ss_pred             eeec-ccccceEEEEEEe
Confidence            9999 9999999999654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.22  E-value=4.8e-06  Score=50.75  Aligned_cols=85  Identities=16%  Similarity=0.317  Sum_probs=49.3

Q ss_pred             eeceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceec-ccceeeccccccceeeeeC-----CcE
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTL   76 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l   76 (258)
                      .+.....+.+|+++.|+|.+.|+.  ...+.|+|.  |+.+..-   ..+.. .........+..|..+..+     ..|
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwl---g~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL   81 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWI---AWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYM   81 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEE---EEEETTTCCEEECTTSTTTEEEEEEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEee---eeccccccchhhhhheeeeEEEEecCccceEEe
Confidence            344556789999999999999853  347899983  3322110   00000 0011112222233323222     247


Q ss_pred             EEeecccCCCceEEEEEEE
Q psy14532         77 LIENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~   95 (258)
                      .|.++ +.+|++.|.|.-.
T Consensus        82 ~i~~L-~~eDtAvYYCAr~   99 (118)
T d1ct8b1          82 QFSSL-TTEDSAIYYCARY   99 (118)
T ss_dssp             EECSC-CGGGCEEEEEEEE
T ss_pred             ccccc-CCCcceEEEEeee
Confidence            89999 9999999999654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.21  E-value=2.5e-06  Score=51.65  Aligned_cols=82  Identities=18%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             ceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      .....+.+|+++.|+|.+.|+.  ...+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.|
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv---~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~   83 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWV---ATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQL   83 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEE---EEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEe---eecccccchhhhhhhheeeEEEeccCccceeeeee
Confidence            3445688999999999998863  346889983  3322110   0000 01111112223334333332     13889


Q ss_pred             eecccCCCceEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTA   94 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~   94 (258)
                      .++ +.+|++.|.|..
T Consensus        84 ~~L-~~eDtAvYYCA~   98 (114)
T d1indh1          84 NSL-RSEDTALYFCAS   98 (114)
T ss_dssp             CSC-CGGGCEEEEEEC
T ss_pred             eee-ccCcccEEEECC
Confidence            999 999999999964

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.21  E-value=3.4e-06  Score=52.04  Aligned_cols=82  Identities=22%  Similarity=0.337  Sum_probs=48.8

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceec-ccceeeccccccceeeeeC-----CcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRI-GEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      ....+.+|+++.|+|.++|+.  ...+.|+|.  ++.+..-   ..+.. +........+..|..+..+     ..|.|.
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv---~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~   83 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGV---AALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMD   83 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEE---EEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEE---eecccccccceeccccccccEEecccccceeeceec
Confidence            345688999999999999854  447899984  3322110   11110 1111112223334333332     237899


Q ss_pred             ecccCCCceEEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTAT   95 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~   95 (258)
                      ++ +.+|++.|.|...
T Consensus        84 sL-~~eDtAvYYCAr~   98 (124)
T d1zvya1          84 SV-KSEDTAIYTCGAT   98 (124)
T ss_dssp             SC-CGGGCEEEEEEEC
T ss_pred             cc-cCCcceEEEEeec
Confidence            99 9999999999764

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.21  E-value=4.5e-06  Score=51.62  Aligned_cols=85  Identities=21%  Similarity=0.349  Sum_probs=50.9

Q ss_pred             eceeeeecCCCceEEEEEEeecCCC--eEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPTP--HISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|+|.+.++...  .+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewi---g~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~   82 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWM---GRIITILDVAHYAPHLQGRVTITADKSTSTVYLE   82 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEE---EEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeee---eecCCcccccccccceeEEEEEeecCCCceEEee
Confidence            3344568999999999999986443  6789873  3322111   1111 01111223334444444432     2378


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.++ +.+|++.|.|....
T Consensus        83 ~~sL-~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          83 LRNL-RSDDTAVYFCAGVY  100 (128)
T ss_dssp             ECSC-CGGGCEEEEEEEEE
T ss_pred             eeec-cccCceEEEEeEEe
Confidence            8899 99999999998654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=5.3e-06  Score=51.97  Aligned_cols=68  Identities=21%  Similarity=0.377  Sum_probs=46.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccCC----------------------CcceEE-ecC---CeEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLPL----------------------NRRQKV-FPN---GTLLIE  170 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~~----------------------~~~~~~-~~~---~~l~i~  170 (258)
                      +..+.+.+|++++|.|...+.....+.|++.  +..+..                      ..+... ..+   .+|.|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            4556788999999999987666667999982  222100                      001111 111   259999


Q ss_pred             ecccCCCCcEEEEEEEe
Q psy14532        171 NVQKDHDRGVYWCTATN  187 (258)
Q Consensus       171 ~~~~~~~~g~y~C~~~~  187 (258)
                      +++. +|+|.|.|.+..
T Consensus        88 ~~~~-~Dsg~YyCa~~~  103 (122)
T d1nezg_          88 KFSK-ENEGYYFCSVIS  103 (122)
T ss_dssp             SCCG-GGCEEEEEEEEE
T ss_pred             cccc-CCCEEEEeeEeC
Confidence            9998 999999998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.20  E-value=6.9e-06  Score=48.86  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=54.9

Q ss_pred             CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE-Eec---CCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK-VFP---NGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      |.+...+...+..|++|+|.|.... ....+.+++++.......... ...   ...+.|.+++. .|+|.|.|......
T Consensus         3 PsLsa~P~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~-~~~G~Y~C~y~~~~   80 (96)
T d1nkra1           3 PSLLAHPGPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQ-DLAGTYRCYGSVTH   80 (96)
T ss_dssp             CEEEEESCSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCG-GGCEEEEEEEEBTT
T ss_pred             CEEEeeCCCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCc-ccCeEEEEEEEcCC
Confidence            4444445567889999999998753 345788888776432111111 111   23588999997 99999999876543


Q ss_pred             ----CCCccceEEEEe
Q psy14532        190 ----GRSSSQNVHISV  201 (258)
Q Consensus       190 ----~~~~~~~~~l~v  201 (258)
                          -+..+..+.|.|
T Consensus        81 ~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          81 SPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             BTTCCCCCCCCEEEEE
T ss_pred             CCCcccCCCCCEEEEC
Confidence                233456666544

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=7.8e-06  Score=50.44  Aligned_cols=70  Identities=24%  Similarity=0.371  Sum_probs=47.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEE--e---cCCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKV--F---PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~--~---~~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|+.++|.|...+.....+.|+|..  +...            ...+...  .   ....|.|.++.. +|+|
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~Dsg   85 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP-GDSA   85 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG-GGCE
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC-CCCc
Confidence            45577889999999999876555579999832  2111            0011111  1   112599999997 9999


Q ss_pred             EEEEEEEeCC
Q psy14532        180 VYWCTATNKQ  189 (258)
Q Consensus       180 ~y~C~~~~~~  189 (258)
                      .|.|.+....
T Consensus        86 ~YyCa~~~~~   95 (113)
T d2bnqd1          86 TYLCAVRPTS   95 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             EEeEeEecCC
Confidence            9999987654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=1.1e-06  Score=53.53  Aligned_cols=83  Identities=19%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeC-----CcEEEee
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLIEN   80 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~   80 (258)
                      ....+.+|++++|+|.+.|..  ...+.|+|.  |+.+..-   ..+...........+..|..+..+     ..|.+.+
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv---~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~   84 (116)
T d1fn4b1           8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWM---GRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS   84 (116)
T ss_dssp             CCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEE---EEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEES
T ss_pred             CCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeee---eeccccccccccccccceEEEccccccchhhcceec
Confidence            345678999999999998853  347889983  4332211   000001111111122222222222     2377899


Q ss_pred             cccCCCceEEEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATN   96 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~   96 (258)
                      + +.+|++.|.|....
T Consensus        85 L-~~eDTAvYyCAr~~   99 (116)
T d1fn4b1          85 L-QTDDTGTYYCTRDL   99 (116)
T ss_dssp             C-CCCCCEEEEEEEEC
T ss_pred             c-CCCCCEEEEEEeec
Confidence            9 99999999996543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.19  E-value=4.9e-06  Score=50.91  Aligned_cols=82  Identities=21%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             eeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      ....+.+|+++.|.|.+.|+  ....+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.|.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv---~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~   84 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGV---AAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMD   84 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEE---EEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEEC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeee---eecCCcccccccccceeEeEEEeecCCceEEEEEee
Confidence            44567899999999999875  3447899984  3322111   0110 01111112233334434332     137899


Q ss_pred             ecccCCCceEEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTAT   95 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~   95 (258)
                      ++ +.+|++.|.|...
T Consensus        85 ~L-~~eDtAvYYCAr~   99 (121)
T d2p49b1          85 SL-KPEDTATYYCAAG   99 (121)
T ss_dssp             SC-CGGGCEEEEEEES
T ss_pred             ec-cccceeEEeeecc
Confidence            99 9999999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.19  E-value=5.2e-06  Score=50.90  Aligned_cols=84  Identities=19%  Similarity=0.311  Sum_probs=49.5

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      +.....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+.--   ..+. ..........+..|..+..+     ..|.
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv---~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~   82 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWI---ARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQ   82 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEE---EEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeee---eeccccccccccccccceeEEEEccCCcceEEec
Confidence            34456688999999999999863  347899983  3322211   0010 01111122233334333332     2378


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|.-.
T Consensus        83 ~~sL-~~eDTAvYYCAR~   99 (124)
T d1yedb1          83 LSSL-KSEDSAVYFCTRW   99 (124)
T ss_dssp             EESC-CGGGCEEEEEEEC
T ss_pred             cccc-CCCcceEEEeccc
Confidence            9999 9999999999743

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=5.7e-06  Score=48.53  Aligned_cols=42  Identities=31%  Similarity=0.589  Sum_probs=29.9

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      ||++.....   ...++.++|.|.+.++ | ...|.|.++|+.+...
T Consensus         3 pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~   46 (89)
T d2mhaa1           3 SPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQD   46 (89)
T ss_dssp             CCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTT
T ss_pred             CCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCC
Confidence            676654322   2356789999999986 3 3489999999877644

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=5.6e-06  Score=50.47  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=46.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++|+|.|...+.....+.|++..  ....            ...+.....   +..|.|.++.. +|+|.|
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQT-EDVATY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCG-GGCSEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccc-ccCCcE
Confidence            44567889999999998865544579999832  2111            111222221   23699999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1ospl1          87 FCQQYW   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeecc
Confidence            997653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.18  E-value=1.9e-05  Score=47.55  Aligned_cols=80  Identities=18%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE--
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL--   77 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--   77 (258)
                      .|.+..-+.. .+..|+..+|.|.+.++ | ...|.|.++|..+...... ...                ...+++..  
T Consensus         4 ~P~v~v~~~~-p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~-~~~----------------~~~dgty~~~   65 (103)
T d1hdma1           4 FPIAEVFTLK-PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPT-FVS----------------AVDGLSFQAF   65 (103)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCE-EEE----------------EETTTEEEEE
T ss_pred             CCeEEEECCC-chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEec-eEE----------------eCCCCcEEEE
Confidence            4666433222 35679999999999995 4 3489999999876543111 110                01122221  


Q ss_pred             -EeecccCCCceEEEEEEEeCCcc
Q psy14532         78 -IENVQKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        78 -i~~~~~~~d~G~Y~C~~~~~~~~  100 (258)
                       ...+ ..+|...|+|.+.+....
T Consensus        66 S~L~v-~~~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          66 SYLNF-TPEPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             EEEEE-CCCTTCCEEEEEEETTTT
T ss_pred             EEEEE-ecCCCCEEEEEEEeCCCC
Confidence             1233 455666899999987543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1.1e-05  Score=47.54  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE---
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL---   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---   76 (258)
                      ||++......   ..+..++|.|.+.|+ |. ..|+|.++|..+.....  ...                ...+++.   
T Consensus         3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~--~~~----------------~~~dgty~~~   61 (91)
T d3frua1           3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNC--STG----------------PNGDGSFHAW   61 (91)
T ss_dssp             CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEE--EEE----------------ECSSSCEEEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCc--cce----------------ecCCCCEeEE
Confidence            6777543222   245689999999995 43 48999999987754311  000                0112221   


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+...|+|.+.+...
T Consensus        62 S~l~v-~~~~~~~ytC~V~H~sL   83 (91)
T d3frua1          62 SLLEV-KRGDEHHYQCQVEHEGL   83 (91)
T ss_dssp             EEEEE-ETTCGGGEEEEEECTTS
T ss_pred             EEEEE-CCCCCCEEEEEEEeCCC
Confidence            12233 44566789999998653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.3e-06  Score=51.24  Aligned_cols=68  Identities=21%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             cceecCCcEEEEeeeCcc--cCceEEEEeCC--ccc------------CCCcceEEe---cC--CeEEEEecccCCCCcE
Q psy14532        122 VSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQL------------PLNRRQKVF---PN--GTLLIENVQKDHDRGV  180 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~------------~~~~~~~~~---~~--~~l~i~~~~~~~~~g~  180 (258)
                      +...+|++++|.|.....  ....+.|++..  ...            ....+..+.   ..  .+|.|.+++. +|+|.
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~-~DsG~   84 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLRE-EDSGH   84 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCG-GGCEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCC-CCCEE
Confidence            567789999999987542  23467898732  110            111222221   11  2589999997 99999


Q ss_pred             EEEEEEeCCC
Q psy14532        181 YWCTATNKQG  190 (258)
Q Consensus       181 y~C~~~~~~~  190 (258)
                      |.|.+.....
T Consensus        85 Y~C~v~~~~~   94 (108)
T d1hkfa_          85 YWCRIYRPSD   94 (108)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEecCCC
Confidence            9999886543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=4.2e-06  Score=51.93  Aligned_cols=84  Identities=17%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             eceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecc-cceeeccccccceeeeeC---C--cEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFPN---G--TLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~l~   77 (258)
                      +.....+.+|+++.|+|.+.++.  ...+.|+|.  |+.+..-   ..+... ........+..|..+..+   .  .|.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv---~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~   82 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWM---GGIIPIFNIAHYAQRFQGRVSITADESTSTAYME   82 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEE---EEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeee---eeccccccccccccccccceEEecccccceEEee
Confidence            44556689999999999998753  347899983  3322211   111111 111122233334333322   1  278


Q ss_pred             EeecccCCCceEEEEEEE
Q psy14532         78 IENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~   95 (258)
                      |.++ +.+|++.|.|.-.
T Consensus        83 ~~sL-~~eDtA~YYCAr~   99 (130)
T d1rzga1          83 LSSL-RSEDTAVFYCASP   99 (130)
T ss_dssp             ECSC-CGGGCEEEEEEEC
T ss_pred             eeec-CCCccEEEEEEEe
Confidence            8999 9999999999753

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9.5e-06  Score=48.23  Aligned_cols=42  Identities=24%  Similarity=0.427  Sum_probs=29.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      ||++.+....   ..++.++|.|.+.++ | ...|+|.++|+.+...
T Consensus         3 PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~   46 (95)
T d1k5na1           3 PPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQD   46 (95)
T ss_dssp             CCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGG
T ss_pred             CCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCC
Confidence            6776543222   235679999999996 3 3489999999877654

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.7e-06  Score=50.17  Aligned_cols=87  Identities=17%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             CCCcceee-c-eeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE
Q psy14532          1 SHPQLIYK-F-IQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL   76 (258)
Q Consensus         1 ~~p~~~~~-~-~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   76 (258)
                      +||.+..- + .+.....+.+++|.|.+.++ |.. .|.|+++|..+............           .........|
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~-----------~~~y~~~S~L   71 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-----------GELASTQSEL   71 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-----------TTEEEEEEEE
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCC-----------CCeEEEEEEE
Confidence            47776432 2 22233456779999999985 433 79999999887644211110000           0011112335


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      .|..- .......|+|.+.+...
T Consensus        72 ~v~~~-~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          72 TLSQK-HWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             EEEHH-HHHTTCCEEEEEEETTE
T ss_pred             EECHH-HcCCCCEEEEEEEECCE
Confidence            55544 33345679999998753

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.14  E-value=9.4e-06  Score=48.42  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=44.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCc---E
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT---L   76 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l   76 (258)
                      +|.+...+.. ....|+.++|.|.+.++ | ...|.|.++|+.+..........                ...+++   .
T Consensus         2 ~P~V~v~p~~-~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~----------------~~~dgty~~~   64 (97)
T d1uvqb1           2 EPTVTISPSR-TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI----------------RNGDWTFQIL   64 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE----------------ECSSSCEEEE
T ss_pred             CCEEEEecCC-cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceee----------------cCCCceEEEE
Confidence            5776544332 24567888999999985 3 45899999998765431111100                011222   2


Q ss_pred             EEeecccCCCceEEEEEEEeCCc
Q psy14532         77 LIENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        77 ~i~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ....+ ...+...|+|.+.+...
T Consensus        65 s~l~v-~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          65 VMLEM-TPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             EEEEC-CSCTTCCEEEEEECTTC
T ss_pred             EEecc-CCCCCCEEEEEEEeCCC
Confidence            23445 56667899999998654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=5.6e-06  Score=50.37  Aligned_cols=68  Identities=19%  Similarity=0.288  Sum_probs=45.7

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|+|.  +....            ...+....   .+..|.|.+++. +|+|.|
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~Y   86 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLES-EDFADY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcc-cCCeEE
Confidence            4456688999999999887655557999983  22211            11111111   123699999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1c5cl1          87 YCLQYA   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEecCc
Confidence            997653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=4.4e-06  Score=50.87  Aligned_cols=68  Identities=19%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++.  +....            ...++...   ...+|.|.++.. +|+|.|
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS-EDVGDY   86 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcc-ccCEEE
Confidence            4456688999999999876544457999974  22211            11122221   123599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        87 yCa~~~   92 (106)
T d1i8ka_          87 YCLQSF   92 (106)
T ss_dssp             EEEECS
T ss_pred             eEecCc
Confidence            997654

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=9.7e-06  Score=50.44  Aligned_cols=21  Identities=19%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             cEEEeecccCCCceEEEEEEEe
Q psy14532         75 TLLIENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        75 ~l~i~~~~~~~d~G~Y~C~~~~   96 (258)
                      +|.|.++ +.+|+|.|.|.+..
T Consensus        78 ~L~I~~l-~~~DsavYyCa~~~   98 (118)
T d1yjdc1          78 TFYLQNL-YVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEESC-CGGGCEEEEEEEEE
T ss_pred             EEEECCC-CcccCeEEEEEEec
Confidence            6999999 99999999998754

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=9.3e-06  Score=49.50  Aligned_cols=88  Identities=17%  Similarity=0.229  Sum_probs=47.1

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+..-+.......+..++|.|.+.++ |. ..|.|.++|..+............         ...........|.|.
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~---------~~dgtys~~S~L~v~   75 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD---------SKDSTYSMSSTLTLT   75 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCC---------TTTCCEEEEEEEEEE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEe---------cCCCCEEEEEEEEEC
Confidence            5666433222222346789999999885 33 489999999876543111100000         000011112235554


Q ss_pred             ecccCCCceEEEEEEEeCCc
Q psy14532         80 NVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      .- .......|+|.+.+...
T Consensus        76 ~~-~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          76 KD-EYERHNSYTCEATHKTS   94 (107)
T ss_dssp             HH-HHHTCCEEEEEEECTTC
T ss_pred             HH-HhCCCCEEEEEEEECCC
Confidence            44 33346689999998653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.12  E-value=1.7e-05  Score=47.32  Aligned_cols=65  Identities=22%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             eecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCc---ceEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNR---RQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ...++.++|.|.+.++ | ...++|.+||..+....   ......++++.+.   .+.. .+...|+|.+.+..
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~-~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTP-SYGDTYTCVVEHIG   86 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECC-CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCC-CCCCEEEEEEEeCC
Confidence            3456789999999984 4 45899999998764332   1222334443322   3334 55668999999974

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.12  E-value=8.7e-06  Score=49.50  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=45.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|...+.....+.||+..  ....            ...+....   ....|.|.+++. +|++.|
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Y   85 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQF-DDFATY   85 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG-GGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccc-cCCCcE
Confidence            45577889999999998866555579999842  2111            11122221   112599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1op3k1          86 HCQHYA   91 (106)
T ss_dssp             EEEEEC
T ss_pred             eeeeCC
Confidence            998654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.12  E-value=1.1e-05  Score=49.88  Aligned_cols=68  Identities=19%  Similarity=0.350  Sum_probs=45.1

Q ss_pred             CCCcceecCCcEEEEeeeCc-ccCceEEEEeCC-----cccC-----------------CCcceEE--e---cCCeEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG-YPIESITWQKGV-----QQLP-----------------LNRRQKV--F---PNGTLLIE  170 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~-----~~~~-----------------~~~~~~~--~---~~~~l~i~  170 (258)
                      +....+.+|++++|.|.+.+ .....+.|++..     +.+.                 ...+...  .   ....|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            45567889999999999876 345579999742     1110                 0011111  1   12369999


Q ss_pred             ecccCCCCcEEEEEEEe
Q psy14532        171 NVQKDHDRGVYWCTATN  187 (258)
Q Consensus       171 ~~~~~~~~g~y~C~~~~  187 (258)
                      +++. +|+|.|.|.+..
T Consensus        85 ~~~~-~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          85 NVKP-EDSDFYFCATVG  100 (115)
T ss_dssp             SCCG-GGCEEEEEEEEC
T ss_pred             ccCC-CCCcEEEEeEcC
Confidence            9998 999999998753

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=6.9e-06  Score=50.12  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=45.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++|+|.|.........+.|++..  ....            ...+....   ....|.|.++.. +|+|.|
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DSa~Y   86 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQA-DDDADY   86 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhhee-cCCceE
Confidence            44567889999999999866555579999842  2111            11122221   123599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1kcvl1          87 YCGQSY   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            997643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.12  E-value=2.7e-06  Score=51.58  Aligned_cols=67  Identities=24%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y~  182 (258)
                      +.+.+.+|++++|.|.........+.|+|..  ....            ...+....   ....|.|.++.. +|+|.|.
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~Yy   84 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQA-EDEADYY   84 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcch-hHCceEE
Confidence            4577889999999998866555578999842  2111            00111111   113588999987 9999999


Q ss_pred             EEEEe
Q psy14532        183 CTATN  187 (258)
Q Consensus       183 C~~~~  187 (258)
                      |.+..
T Consensus        85 CA~~~   89 (103)
T d8faba1          85 CQAWD   89 (103)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            97664

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.9e-06  Score=51.34  Aligned_cols=45  Identities=18%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      +|.+..-+.......++.++|.|.+.++ | ...|.|+++|..+...
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~   51 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG   51 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCC
Confidence            5666443322223346779999999985 3 3389999999887654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.11  E-value=6.1e-06  Score=50.34  Aligned_cols=68  Identities=22%  Similarity=0.385  Sum_probs=45.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++..  ....            ...+....   .+..|.|.++.. +|+|.|
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET-EDFGMY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCc-CCCEEE
Confidence            45567889999999998765445579999842  2111            11112111   123699999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1j1pl_          87 FCQQAN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEcCC
Confidence            997643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1e-05  Score=49.64  Aligned_cols=67  Identities=25%  Similarity=0.400  Sum_probs=41.4

Q ss_pred             cceecCCcEEEEeeeCccc---CceE--EEEeCCcccC----------------CCcceEE-ecCCeEEEEecccCCCCc
Q psy14532        122 VSAIAGEPLYLGCPVAGYP---IESI--TWQKGVQQLP----------------LNRRQKV-FPNGTLLIENVQKDHDRG  179 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~---~~~i--~W~~~~~~~~----------------~~~~~~~-~~~~~l~i~~~~~~~~~g  179 (258)
                      +.+..|++++|.|.+....   ...+  .|.++.....                ...+... ..+.+|.|.+++. +|+|
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~-~D~G   82 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQI-KDKG   82 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCG-GGCE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCCh-hHCE
Confidence            4567899999999875322   2233  3444332210                0111111 2345799999998 9999


Q ss_pred             EEEEEEEeCC
Q psy14532        180 VYWCTATNKQ  189 (258)
Q Consensus       180 ~y~C~~~~~~  189 (258)
                      .|.|.+....
T Consensus        83 ~Y~C~V~~~~   92 (110)
T d1ncna_          83 LYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEecC
Confidence            9999997543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.11  E-value=5e-06  Score=51.24  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=48.7

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      ....+.+|+++.|+|.+.++.  ...+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.|.
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl---~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~   84 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWV---SGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMN   84 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceee---eecCcccccchhccccccceEEeccCCCcEEEeeee
Confidence            445688999999999998864  336899983  3322110   0000 01111122333344444333     238899


Q ss_pred             ecccCCCceEEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTAT   95 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~   95 (258)
                      ++ +.+|++.|.|...
T Consensus        85 ~L-~~eDtavYYCAr~   99 (126)
T d1dfbh1          85 SL-RAEDMALYYCVKG   99 (126)
T ss_dssp             SC-CGGGCEEEEEEEE
T ss_pred             ee-ccCcceEEEEEec
Confidence            99 9999999999654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.11  E-value=1e-05  Score=49.66  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             eeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      ....+++|+++.|+|.+.++..  ..+.|+|.  |+.+.--   ..+. .+........+..|..+..+     ..|.|.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl---~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~   84 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWV---AYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMT   84 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEE---EEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeee---eecCcccccccccceeeeeEEEeccCCccEeEeeee
Confidence            3455789999999999998643  36899983  3322110   0000 00011122233344433332     237899


Q ss_pred             ecccCCCceEEEEEEEe
Q psy14532         80 NVQKDHDRGVYWCTATN   96 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~   96 (258)
                      ++ +.+|++.|.|....
T Consensus        85 sL-~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          85 SL-RSEDTAIYYCTRGG  100 (122)
T ss_dssp             SC-CGGGCEEEEEEEEC
T ss_pred             ee-cccCceEEEeecCC
Confidence            99 99999999996543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.6e-06  Score=50.08  Aligned_cols=68  Identities=22%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             cceecCCcEEEEeeeCccc----CceEEEEeCCcccC------------CCcceEEec--CCeEEEEecccCCCCcEEEE
Q psy14532        122 VSAIAGEPLYLGCPVAGYP----IESITWQKGVQQLP------------LNRRQKVFP--NGTLLIENVQKDHDRGVYWC  183 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~----~~~i~W~~~~~~~~------------~~~~~~~~~--~~~l~i~~~~~~~~~g~y~C  183 (258)
                      +....|++++|.|......    ...+.|.+++..+.            ...+.....  +.+|.|.+++. +|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~-~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRP-SDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCG-GGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCCh-HHCeEEEE
Confidence            4567899999999875322    23678877654321            111222222  34799999997 99999999


Q ss_pred             EEEeCCC
Q psy14532        184 TATNKQG  190 (258)
Q Consensus       184 ~~~~~~~  190 (258)
                      .+.+..+
T Consensus        83 ~V~~~~~   89 (105)
T d1dr9a1          83 VVLKYEK   89 (105)
T ss_dssp             EEEECCT
T ss_pred             EEEeCCC
Confidence            9987643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.10  E-value=5.8e-06  Score=50.90  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEEe
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLIE   79 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i~   79 (258)
                      ....+.+|+++.|.|.+.++.  ...+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv---~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~   84 (125)
T d1op3h1           8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWV---ASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH   84 (125)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeee---eecCccccccccccccccceEEeccCccceEeeeee
Confidence            345678999999999998853  346899983  3322110   0000 11111222333444444332     237899


Q ss_pred             ecccCCCceEEEEEEE
Q psy14532         80 NVQKDHDRGVYWCTAT   95 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~   95 (258)
                      ++ +.+|++.|.|...
T Consensus        85 sL-~~eDTAvYYCAr~   99 (125)
T d1op3h1          85 KM-RVEDTAIYYCARK   99 (125)
T ss_dssp             SC-CGGGCEEEEEEEE
T ss_pred             cc-CCccceeEeEeec
Confidence            99 9999999999754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.6e-06  Score=51.49  Aligned_cols=70  Identities=17%  Similarity=0.251  Sum_probs=45.6

Q ss_pred             CCCcceecCCcEEEEeeeCc----c---cCceEEEEeCCcccC-----------------CCcceEEec-----CCeEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG----Y---PIESITWQKGVQQLP-----------------LNRRQKVFP-----NGTLLI  169 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~----~---~~~~i~W~~~~~~~~-----------------~~~~~~~~~-----~~~l~i  169 (258)
                      +..+.+.+|+.|.|.|....    .   ....+.|++....-.                 ...+..+..     +.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            34577889999999998742    1   123678987532110                 112233321     236999


Q ss_pred             EecccCCCCcEEEEEEEeCC
Q psy14532        170 ENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       170 ~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .+++. +|+|.|.|.+....
T Consensus        88 ~~v~~-~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          88 RDARM-SDAGRYFFRMEKGN  106 (121)
T ss_dssp             CSCCG-GGCEEEEEEEEETT
T ss_pred             CCCCh-HHCEEEEEEEEeCC
Confidence            99998 99999999997643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.09  E-value=1.1e-05  Score=50.04  Aligned_cols=86  Identities=23%  Similarity=0.274  Sum_probs=47.7

Q ss_pred             eeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee---cccceeeccccccceeeeeC-----CcEE
Q psy14532         10 IQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR---IGEARVQQLPLNRRQKVFPN-----GTLL   77 (258)
Q Consensus        10 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~l~   77 (258)
                      ....+.+|+++.|.|.++|+.  ...+.|+|.  |+.+..-.......   .+........+..|..+..+     ..|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            345678999999999998853  347899984  32211100000000   00001111222223323221     2488


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      |.++ +.+|++.|.|....
T Consensus        88 i~~l-~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSL-KPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSC-CGGGCEEEEEEEES
T ss_pred             eecc-cccceeEEEEEEEe
Confidence            9999 99999999997653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.09  E-value=1e-05  Score=48.62  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             eecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ...|+..+|.|.+.|+ | ...|+|.+||..+..+..   .....++++.+.   .+.. .+...|+|.|.+..
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~-~~~~~ytC~V~H~s   88 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP-STDDFYDCEVDHWG   88 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC-CTTCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC-CCCCEEEEEEEECC
Confidence            3456788999999884 5 449999999987654321   112234443222   2233 45568999999874

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=7.8e-06  Score=49.74  Aligned_cols=66  Identities=23%  Similarity=0.396  Sum_probs=44.6

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y~  182 (258)
                      +.+.+.+|++++|.|...+.....+.|++..  ....            ...+.....   +..|.|.++.. +|+|.|.
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Yy   86 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEA-DDTAIYF   86 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcCh-hhCCCcc
Confidence            4567889999999999876555679999842  1110            111222211   13699999998 9999999


Q ss_pred             EEEE
Q psy14532        183 CTAT  186 (258)
Q Consensus       183 C~~~  186 (258)
                      |...
T Consensus        87 Ca~~   90 (106)
T d1lk3l1          87 CQQS   90 (106)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            9654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=8.3e-06  Score=50.03  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=45.1

Q ss_pred             CCCcceecCCcEEEEeeeCcc-cCceEEEEeC--CcccC------------CCcceEEec---CCeEEEEecccCCCCcE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-PIESITWQKG--VQQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGV  180 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~--~~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~  180 (258)
                      ++.+.+.+|++++|.|..... ....+.|++.  +....            ...+.....   ...|.|.++.. +|+|.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~   83 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATL-RDTAV   83 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCG-GGCEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhccccc-CCceE
Confidence            345788899999999987543 3446899983  22211            001111111   12599999997 99999


Q ss_pred             EEEEEEeC
Q psy14532        181 YWCTATNK  188 (258)
Q Consensus       181 y~C~~~~~  188 (258)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (110)
T d2esvd1          84 YYCIVVRS   91 (110)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99988654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.08  E-value=8.2e-06  Score=49.72  Aligned_cols=68  Identities=18%  Similarity=0.317  Sum_probs=45.4

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++|+|.|.........+.|++..  ....            ...+....   ....|.|.++.. +|++.|
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DsA~Y   86 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP-EDFATY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEecccee-CcCceE
Confidence            45567889999999999875555689999842  2110            11122221   122599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|...+
T Consensus        87 yCa~~~   92 (107)
T d1tjgl1          87 YCQQLH   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEECc
Confidence            996543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=1.2e-05  Score=47.99  Aligned_cols=78  Identities=18%  Similarity=0.344  Sum_probs=41.1

Q ss_pred             CCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecc-cceeeccccccceeeeeC-----CcEEEeecccCC
Q psy14532         16 PGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFPN-----GTLLIENVQKDH   85 (258)
Q Consensus        16 ~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~~   85 (258)
                      +|++++|+|.++|+.  ...+.|+|.  |+.+.--   ..+... ........+..|..+..+     ..|.|.++ +.+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl---~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL-~~e   76 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWI---GRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL-TSE   76 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEE---EEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEee---eeccccccccccccceeeceEEeccccccEEEeeeeec-ccc
Confidence            589999999999864  347899984  4433211   010000 011112233334333332     24889999 999


Q ss_pred             CceEEEEEEEeC
Q psy14532         86 DRGVYWCTATNK   97 (258)
Q Consensus        86 d~G~Y~C~~~~~   97 (258)
                      |++.|.|.....
T Consensus        77 DTAvYYCAr~~~   88 (103)
T d1oari_          77 DSAVYYCARMWY   88 (103)
T ss_dssp             CCSEEEEEEEEC
T ss_pred             ccEEEEeEEECC
Confidence            999999975443

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.07  E-value=1.1e-05  Score=49.88  Aligned_cols=84  Identities=21%  Similarity=0.311  Sum_probs=49.2

Q ss_pred             ceeeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      .....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+..-   ..+. .+........+..|..+..+     ..|.|
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~---~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~   83 (127)
T d2fb4h1           7 SGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWV---AIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQM   83 (127)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE---EEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             ECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeee---eecccccccchhcccccceEEEeccCCccEEEeee
Confidence            3445678999999999998853  347899983  3322110   0000 01111122233334333332     23789


Q ss_pred             eecccCCCceEEEEEEEe
Q psy14532         79 ENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~   96 (258)
                      .++ +.+|++.|.|....
T Consensus        84 ~~L-~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          84 DSL-RPEDTGVYFCARDG  100 (127)
T ss_dssp             CSC-CGGGCEEEEEEEEC
T ss_pred             eee-eecceeEEEEEEec
Confidence            999 99999999997543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.07  E-value=1.1e-05  Score=49.87  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=46.7

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe-----cCCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF-----PNGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~-----~~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|++++|.|.........+.|||..  ....            ...+....     ....|.|.+++. +|+|
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsg   86 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL-SDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG-GGCE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc-ccCc
Confidence            44567889999999999866556679999842  2111            01112221     122599999998 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.3e-05  Score=47.62  Aligned_cols=64  Identities=9%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             cCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEe--cCCeEEEE---ecccCCCCcEEEEEEEeCCC
Q psy14532        126 AGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVF--PNGTLLIE---NVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~--~~~~l~i~---~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .++.+.|.|.+.| +|.+.|.|.+++..+.........  .++.+.+.   .+.. .+...|+|.+.+..-
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~-~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM-TTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET-TSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccC-CccceEEEEEEecCC
Confidence            4677899999987 688899999998877644333222  23433322   2233 566799999998753

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.07  E-value=2.4e-05  Score=48.60  Aligned_cols=85  Identities=20%  Similarity=0.327  Sum_probs=49.6

Q ss_pred             eceeeeecCCCceEEEEEEeecCC--CeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeCC-----cEE
Q psy14532          8 KFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPNG-----TLL   77 (258)
Q Consensus         8 ~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~l~   77 (258)
                      +.....+.+|+++.|.|.+.+...  ..+.|+|.  |+.+..-   ..+. ..........+..|..+..+.     .|.
T Consensus         5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv---g~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~   81 (133)
T d1rzfh1           5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWM---AGIIPIFGSSHYAQKFRGRVTISADESTRTVYLH   81 (133)
T ss_dssp             ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEE---EEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEE---eecCCccccccccccccccEEEEeccCcceeEEe
Confidence            334456899999999999998643  36889883  3322111   0110 111111222333444343321     377


Q ss_pred             EeecccCCCceEEEEEEEe
Q psy14532         78 IENVQKDHDRGVYWCTATN   96 (258)
Q Consensus        78 i~~~~~~~d~G~Y~C~~~~   96 (258)
                      +.++ +.+|++.|.|....
T Consensus        82 ~~~L-~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          82 LRGL-RSDDTAVYYCASNS   99 (133)
T ss_dssp             ECSC-CGGGCEEEEEEEEE
T ss_pred             eccC-CCCCCEEEEeeecc
Confidence            8899 99999999996543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.07  E-value=7.8e-06  Score=50.56  Aligned_cols=82  Identities=20%  Similarity=0.371  Sum_probs=46.7

Q ss_pred             eeeecCCCceEEEEEEeecC--CCeEEEeeC--CEeCcCCccccceecc-cceeeccccccceeeeeC-----CcEEEee
Q psy14532         11 QQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFPN-----GTLLIEN   80 (258)
Q Consensus        11 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~l~i~~   80 (258)
                      ...+.+|+++.|+|.+.++.  ...+.|+|.  |+.+..-   ..+... ........+..|..+..+     ..|.|.+
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl---~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~   84 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGV---AVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNS   84 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEE---EEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEee---eccccccccccccccceeeEEEEecCCceEEEEEEec
Confidence            35678999999999998853  447899983  3322110   001100 111112222233333222     2388999


Q ss_pred             cccCCCceEEEEEEEe
Q psy14532         81 VQKDHDRGVYWCTATN   96 (258)
Q Consensus        81 ~~~~~d~G~Y~C~~~~   96 (258)
                      + +.+|++.|.|....
T Consensus        85 l-~~eDTAvYYCAr~~   99 (126)
T d1rjca1          85 L-KPEDTAMYYCAADT   99 (126)
T ss_dssp             C-CGGGCEEEEEEECC
T ss_pred             c-CcccCceeEEEeec
Confidence            9 99999999997543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.8e-05  Score=47.21  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             CCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE-----ecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-----FPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      +|.+...+...+..|++|+|.|.... ....+.++|++...........     .....+.|.++.. .|+|.|+|....
T Consensus         4 kPsLsa~P~~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~-~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPSPVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP-SRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCT-TSCEEEEEEEEC
T ss_pred             CCEEEeeCCCccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeeccc-CCCeEEEEeeEc
Confidence            45555545567899999999998653 3456777887765332211100     1123588999987 999999998865


Q ss_pred             CC
Q psy14532        188 KQ  189 (258)
Q Consensus       188 ~~  189 (258)
                      ..
T Consensus        82 ~~   83 (98)
T d1ugna2          82 SN   83 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.7e-06  Score=47.50  Aligned_cols=78  Identities=17%  Similarity=0.335  Sum_probs=47.1

Q ss_pred             cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      .-|.+|+|+|+..  ....+.|.+++..+.........                 ......|.+.+.+..+++|.|.|.+
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~-----------------~~~~~~l~L~dfSe~e~sGyY~C~~   68 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNI-----------------GSDEDHLSLKEFSELEQSGYYVCYP   68 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTE-----------------EEETTEEEETTCCHHHHCEEEEEEE
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCccccc-----------------ccccceEEecccCccccCceEEEEc
Confidence            3599999999643  34679999998876644211111                 1112346677763347899999998


Q ss_pred             EeCCcceeeceEEEEEe
Q psy14532         95 TNKQGRSSSQNVHISVT  111 (258)
Q Consensus        95 ~~~~~~~~~~~~~l~v~  111 (258)
                      ...........+.|++.
T Consensus        69 ~~~~~~~~~~~LYLKAR   85 (91)
T d1xiwa_          69 RGSKPEDANFYLYLRAR   85 (91)
T ss_dssp             TTSCGGGCCEEEEEEEC
T ss_pred             CCCCCCCcceEEEEEeE
Confidence            65433222234555543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.05  E-value=1.9e-05  Score=48.03  Aligned_cols=68  Identities=21%  Similarity=0.310  Sum_probs=45.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEecC---CeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVFPN---GTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++..  ....            .........+   ..|.|.++.. +|+|.|
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~Dsa~Y   86 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEP-EDFAMY   86 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCT-TCCSEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEe-ccceEE
Confidence            44567889999999998866555579999842  2110            0111112222   2699999997 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|...+
T Consensus        87 yCA~~~   92 (108)
T d1jhll_          87 ICQQHN   92 (108)
T ss_dssp             EEEECS
T ss_pred             EEeeCC
Confidence            997554

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.05  E-value=7.5e-06  Score=50.70  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC-------C------Ccc--eEEe---cCCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP-------L------NRR--QKVF---PNGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~-------~------~~~--~~~~---~~~~l~i~~~~~~~~~  178 (258)
                      +..+.+.+|++++|.|.........+.|++.  +....       .      ...  ....   .+..|.|.++.. +|+
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds   85 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW-SDS   85 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG-GGC
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc-ccc
Confidence            3457789999999999876544567889973  22111       0      000  1111   113599999998 999


Q ss_pred             cEEEEEEEe
Q psy14532        179 GVYWCTATN  187 (258)
Q Consensus       179 g~y~C~~~~  187 (258)
                      |.|.|.+..
T Consensus        86 g~YyCa~~~   94 (115)
T d1i9ea_          86 AVYFCAVSG   94 (115)
T ss_dssp             EEEEEEEEE
T ss_pred             ceecccccC
Confidence            999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.1e-05  Score=49.75  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=45.3

Q ss_pred             CCCcceecCCcEEEEeeeCcc-cCceEEEEeCC--cccC------------------CCcceEEec---CCeEEEEeccc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-PIESITWQKGV--QQLP------------------LNRRQKVFP---NGTLLIENVQK  174 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~--~~~~------------------~~~~~~~~~---~~~l~i~~~~~  174 (258)
                      +....+.+|++|+|.|..... ....+.|+|..  ....                  ...+.....   ...|.|.++..
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            456678899999999987543 34568999832  1111                  001111111   12599999998


Q ss_pred             CCCCcEEEEEEEeC
Q psy14532        175 DHDRGVYWCTATNK  188 (258)
Q Consensus       175 ~~~~g~y~C~~~~~  188 (258)
                       +|+|.|.|.+...
T Consensus        87 -~Dsg~YyCa~~~~   99 (114)
T d1akjd_          87 -ENEGYYFCSALSN   99 (114)
T ss_dssp             -GGCEEEEEEEEET
T ss_pred             -CCCEEEeEeEcCC
Confidence             9999999998753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.04  E-value=2.7e-05  Score=46.44  Aligned_cols=63  Identities=19%  Similarity=0.219  Sum_probs=39.2

Q ss_pred             cCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcc---eEEecCCeEEE---EecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRR---QKVFPNGTLLI---ENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~---~~~~~~~~l~i---~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++..+|.|.+.+ +|. ..|+|.+||..+..+..   .....++++.+   ..+.. .+...|+|.|.+..
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~-~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVP-RSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCC-CTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcC-CCCCEEEEEEEECC
Confidence            4566789999988 453 48999999887754321   12233444332   34444 67789999999974

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=3.3e-06  Score=48.29  Aligned_cols=53  Identities=23%  Similarity=0.551  Sum_probs=39.5

Q ss_pred             cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      .-|.+|+|+|+..+.  ..+.|.+++..+...                         .+..|.+.+.+..+|+|.|.|..
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~-------------------------~~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQK-------------------------HDKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSC-------------------------CCSEEEEESCCTTTSCEEEEEEC
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCC-------------------------CCcEEEEccccccccCcceEEec
Confidence            369999999986643  479999999877654                         12246777764558999999963

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.03  E-value=9.5e-06  Score=49.81  Aligned_cols=69  Identities=22%  Similarity=0.445  Sum_probs=45.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccCC------------CcceEEe--c---CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLPL------------NRRQKVF--P---NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~~------------~~~~~~~--~---~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|+.++|.|.........+.|++..  .....            ..+....  .   ...|.|.++.. +|+|
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa   84 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GDSA   84 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT-TSCS
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC-CCce
Confidence            44567889999999998765444569999842  22110            0011110  1   12599999997 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|.|.+...
T Consensus        85 ~YyCa~~~~   93 (110)
T d1u3ha1          85 TYFCAASAN   93 (110)
T ss_dssp             EEEECCEES
T ss_pred             eEeeeecCC
Confidence            999987643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.9e-05  Score=42.34  Aligned_cols=60  Identities=18%  Similarity=0.342  Sum_probs=39.6

Q ss_pred             ecCCCceEEEEEEeecC--CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532         14 LQPGPPVSLKCIATGNP--TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW   91 (258)
Q Consensus        14 ~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~   91 (258)
                      ...|..+.|+|......  ...-.|.|+|+.+........                     .-.+.|.   ..+++|.|.
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~---------------------~tey~V~---~~D~SGeY~   64 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ---------------------KTEFKVD---SDDQWGEYS   64 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS---------------------EEEEEEC---GGGCCEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC---------------------ceEEEEe---cCCCCceEE
Confidence            35689999999987643  336789999998876521110                     0122332   466899999


Q ss_pred             EEEEeC
Q psy14532         92 CTATNK   97 (258)
Q Consensus        92 C~~~~~   97 (258)
                      |.+...
T Consensus        65 CVFl~~   70 (80)
T d3b5ha2          65 CVFLPE   70 (80)
T ss_dssp             EEEEST
T ss_pred             EEEcCC
Confidence            997643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.03  E-value=2.2e-05  Score=46.60  Aligned_cols=43  Identities=19%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~   46 (258)
                      +|++.....+  ...++.++|.|.+.++ |.. .|.|++++..+...
T Consensus         3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~   47 (96)
T d2h26a1           3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGT   47 (96)
T ss_dssp             CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTC
T ss_pred             CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCc
Confidence            4666443322  2356689999999985 544 89999998876543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=1.8e-05  Score=48.09  Aligned_cols=67  Identities=22%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++.  +....            ...+....   .+..|.|.++.. +|++.|
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~DsA~Y   86 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQS-EDLAEY   86 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhe-ecceeE
Confidence            4456788999999999875544457999983  22110            11122221   123599999998 999999


Q ss_pred             EEEEE
Q psy14532        182 WCTAT  186 (258)
Q Consensus       182 ~C~~~  186 (258)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d1mexl1          87 FCQQY   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEeEC
Confidence            99754

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.02  E-value=5.7e-06  Score=52.22  Aligned_cols=45  Identities=22%  Similarity=0.466  Sum_probs=32.4

Q ss_pred             CCccee-eceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIY-KFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      ||.+.. .|....+..+..++|.|.+.++ | ...|.|+++|+.+...
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~   51 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG   51 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSS
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCc
Confidence            677643 4444445567889999999985 3 3389999999887654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.3e-05  Score=47.71  Aligned_cols=87  Identities=17%  Similarity=0.313  Sum_probs=47.9

Q ss_pred             CCccee-eceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLIY-KFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      +|.+.. .|... ...++.++|.|.+.++ |. ..|.|+++|..+............         ...........|.|
T Consensus         5 ~P~V~l~~Ps~~-~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~---------~~dgtys~~S~L~v   74 (107)
T d1c5cl2           5 APSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD---------SKDSTYSLSSTLTL   74 (107)
T ss_dssp             CCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCC---------TTTCCEEEEEEEEE
T ss_pred             CCEEEEECCCHH-HhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEeccccc---------CCCCcEEEEEEEEE
Confidence            566643 33322 2346789999999985 43 489999999877654211100000         00001112234556


Q ss_pred             eecccCCCceEEEEEEEeCCc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQG   99 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~   99 (258)
                      ..- .......|+|.+.+...
T Consensus        75 ~~~-~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          75 SKA-DYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             EHH-HHTTCCEEEEEEECTTC
T ss_pred             CHH-HhCCCCEEEEEEEECCC
Confidence            544 43445689999998653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.5e-05  Score=45.13  Aligned_cols=63  Identities=25%  Similarity=0.374  Sum_probs=41.6

Q ss_pred             cCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcceEE--ecCCeEEE---EecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRRQKV--FPNGTLLI---ENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~~~~--~~~~~l~i---~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .|+.++|.|.+.| +|. ..|+|.+++..+........  ..++++.+   ..+.. .+...|+|.|.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~-~~~~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPP-QDTAPYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECT-TCCSCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCC-CCCCEEEEEEEECC
Confidence            4678999999998 453 48999999987654322222  23333222   23334 56678999999974

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.98  E-value=1.7e-05  Score=47.45  Aligned_cols=65  Identities=18%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             eecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCc---ceEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNR---RQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ...|+..+|.|.+.|+ | ...|+|.++|..+....   ......++++.+.   .+.. .+...|+|.|.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~-~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP-SADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC-CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC-CCCCEEEEEEEeCC
Confidence            4456788999999985 4 45899999998765321   1122334443332   3333 55668999999863

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.98  E-value=1.6e-05  Score=48.01  Aligned_cols=85  Identities=18%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+..-+.......++.++|.|.+.++ | ...|.|.++|...............         .+  .......|.|.
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~---------dg--tys~~S~L~v~   72 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDS---------DG--SYFMYSKLRVE   72 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT---------TS--CEEEEEEEEEE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCC---------CC--cEEEEEEEEEC
Confidence            4666432222223357889999999985 4 3489999998765433111100000         00  11112235554


Q ss_pred             ecccCCCceEEEEEEEeCC
Q psy14532         80 NVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~   98 (258)
                      .- .......|+|.+.+..
T Consensus        73 ~~-~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          73 KK-NWVERNSYSCSVVHEG   90 (102)
T ss_dssp             HH-HHHTCCCEEEEEECTT
T ss_pred             HH-HcCCCCEEEEEEEeCC
Confidence            44 3334568999999865

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.97  E-value=3.5e-05  Score=45.61  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=29.3

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      ||.+......   ..++.++|.|.+.++ | ...|.|.++|..+...
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~   46 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHD   46 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCST
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCC
Confidence            5666543221   345679999999995 3 3489999999887654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.4e-05  Score=49.23  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             cceecCCcEEEEeeeCc--ccCceEEEEeCC--cccC---------------CCcceEEe---cCC--eEEEEecccCCC
Q psy14532        122 VSAIAGEPLYLGCPVAG--YPIESITWQKGV--QQLP---------------LNRRQKVF---PNG--TLLIENVQKDHD  177 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~--~~~~---------------~~~~~~~~---~~~--~l~i~~~~~~~~  177 (258)
                      ..+.+|++++|.|...+  .....+.|+|..  ....               ...++.+.   ..+  +|.|.+++. +|
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~-~D   87 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV-ED   87 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc-cc
Confidence            45678999999998764  234578899842  1110               00122221   122  488899998 99


Q ss_pred             CcEEEEEEEeCC
Q psy14532        178 RGVYWCTATNKQ  189 (258)
Q Consensus       178 ~g~y~C~~~~~~  189 (258)
                      +|.|.|.+....
T Consensus        88 sg~Y~Cav~~~~   99 (113)
T d1smoa_          88 SGLYQCVIYQPP   99 (113)
T ss_dssp             CEEEEEEECCTT
T ss_pred             CceEEEEEECCC
Confidence            999999886543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.96  E-value=1.4e-05  Score=47.46  Aligned_cols=61  Identities=23%  Similarity=0.355  Sum_probs=40.5

Q ss_pred             CCcEEEEeeeCcccCceEEEEeCC--cccC-----------CCcceEE--ecC---CeEEEEecccCCCCcEEEEEEEeC
Q psy14532        127 GEPLYLGCPVAGYPIESITWQKGV--QQLP-----------LNRRQKV--FPN---GTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       127 g~~~~l~C~~~~~~~~~i~W~~~~--~~~~-----------~~~~~~~--~~~---~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      |++|+|.|.........+.|++..  ....           ...+...  ...   .+|.|.++.. +|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~-~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQP-SDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeecccc-CcCccceeeEecC
Confidence            789999999876666789999832  1110           0011111  111   2599999998 9999999988653

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=3e-05  Score=46.61  Aligned_cols=85  Identities=16%  Similarity=0.275  Sum_probs=46.7

Q ss_pred             CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE   79 (258)
Q Consensus         2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~   79 (258)
                      +|.+..-+........+.++|.|.+.++ | ...|.|+++|..+........ ...          ..........|.|.
T Consensus         3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~-~~~----------~dgtys~~S~L~v~   71 (101)
T d1cqka_           3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQP-IMD----------TDGSYFVYSKLNVQ   71 (101)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCC-EEC----------TTSCEEEEEEEEEE
T ss_pred             CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeee-ecC----------CCCcEEEEEEEEEC
Confidence            4665332222223356789999999985 4 448999999987654311110 000          00011112234454


Q ss_pred             ecccCCCceEEEEEEEeCC
Q psy14532         80 NVQKDHDRGVYWCTATNKQ   98 (258)
Q Consensus        80 ~~~~~~d~G~Y~C~~~~~~   98 (258)
                      .- .......|+|.+.+..
T Consensus        72 ~~-~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          72 KS-NWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             HH-HHHTTCCEEEEEECTT
T ss_pred             HH-HhCCCCEEEEEEEECC
Confidence            43 3344678999999864

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=1.3e-05  Score=49.59  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC-------------CCcceEEe-----cCCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP-------------LNRRQKVF-----PNGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~-------------~~~~~~~~-----~~~~l~i~~~~~~~~~  178 (258)
                      +..+.+.+|+.++|.|.........+.|++.  ++...             ...+....     ....|.|.++.. +|+
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds   85 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM-SDA   85 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG-GGC
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc-cCC
Confidence            4457788999999999876544567999983  22111             00111111     112599999998 999


Q ss_pred             cEEEEEEEeC
Q psy14532        179 GVYWCTATNK  188 (258)
Q Consensus       179 g~y~C~~~~~  188 (258)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999998754

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.95  E-value=5.6e-06  Score=50.27  Aligned_cols=83  Identities=20%  Similarity=0.350  Sum_probs=48.1

Q ss_pred             ceeeeecCCCceEEEEEEeec--CCCeEEEeeC--CEeCcCCcccccee-cccceeeccccccceeeeeC-----CcEEE
Q psy14532          9 FIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLAGDRHENKNR-IGEARVQQLPLNRRQKVFPN-----GTLLI   78 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~l~i   78 (258)
                      .....+.+|+++.|+|.+.++  ....+.|+|.  |+.+..-   ..+. ..........+..|..+..+     ..|.|
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv---~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~   83 (117)
T d1b2wh1           7 SGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWI---GRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQM   83 (117)
T ss_dssp             CCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEE---EEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeee---eccCCccccccccccceeeEEEEeccccceEEeee
Confidence            344568999999999999875  4457889983  3322111   0000 00011111222233333332     23789


Q ss_pred             eecccCCCceEEEEEEE
Q psy14532         79 ENVQKDHDRGVYWCTAT   95 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~   95 (258)
                      .++ +.+|++.|.|.-.
T Consensus        84 ~sL-~~eDTAvYYCAr~   99 (117)
T d1b2wh1          84 NSL-RPEDTAVYYCARG   99 (117)
T ss_dssp             CSC-CGGGCEEEECCEE
T ss_pred             ccc-cCCcceEEEEccc
Confidence            999 9999999999643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=1.9e-05  Score=48.29  Aligned_cols=68  Identities=19%  Similarity=0.329  Sum_probs=45.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|...+.....+.|++..  ....            ...+.....   +..|.|.++.. +|+|.|
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~-~Dsa~Y   88 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQP-EDIATY   88 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeecee-CcCceE
Confidence            44567889999999999876555578999832  1110            111122111   12599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        89 yCA~~~   94 (109)
T d1bwwa_          89 YCQQYQ   94 (109)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            997653

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.95  E-value=2.5e-05  Score=47.48  Aligned_cols=68  Identities=18%  Similarity=0.317  Sum_probs=45.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++|+|.|.........+.|++..  ....            ...+....   .+..|.|.++.. +|+|.|
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEY-EDMGIY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCC-cCCEEE
Confidence            34567889999999998765555578999742  2110            01112111   123699999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|....
T Consensus        87 yCa~~~   92 (107)
T d1d5il1          87 YCLQYD   92 (107)
T ss_dssp             EEEECS
T ss_pred             Eeeecc
Confidence            997643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=1.5e-05  Score=49.18  Aligned_cols=69  Identities=17%  Similarity=0.360  Sum_probs=46.0

Q ss_pred             CCCcceecCCcEEEEeeeCcc-cCceEEEEeC--CcccC-------------CCcceEEec--C---CeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-PIESITWQKG--VQQLP-------------LNRRQKVFP--N---GTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~--~~~~~-------------~~~~~~~~~--~---~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++++|.|...+. ....+.|++.  +....             ...++.+..  +   ..|.|.++.. +|
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~-~D   84 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR-ND   84 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG-GG
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc-CC
Confidence            455778899999999988543 3457899983  22110             112222221  1   2489999998 99


Q ss_pred             CcEEEEEEEeC
Q psy14532        178 RGVYWCTATNK  188 (258)
Q Consensus       178 ~g~y~C~~~~~  188 (258)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999988654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.94  E-value=1.6e-05  Score=48.83  Aligned_cols=69  Identities=22%  Similarity=0.373  Sum_probs=45.8

Q ss_pred             CCCcceecCCcEEEEeeeCc--ccCceEEEEeCC--cc----cCCCcceEE--ec---CCeEEEEecccCCCCcEEEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG--YPIESITWQKGV--QQ----LPLNRRQKV--FP---NGTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~--~~----~~~~~~~~~--~~---~~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      +..+.+..|++++|.|...+  .....+.|++..  ..    +....+...  ..   ...|.|.+++. +|+|.|.|.+
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyCA~   84 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTV-EDGGTYRCGL   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcC-ccCEEEeEEE
Confidence            34566788999999998754  245679999832  21    112222222  11   12699999998 9999999987


Q ss_pred             EeC
Q psy14532        186 TNK  188 (258)
Q Consensus       186 ~~~  188 (258)
                      ...
T Consensus        85 ~~~   87 (112)
T d1sq2n_          85 GVA   87 (112)
T ss_dssp             CBT
T ss_pred             ecC
Confidence            654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.93  E-value=4.7e-05  Score=46.23  Aligned_cols=45  Identities=11%  Similarity=0.113  Sum_probs=31.9

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCC
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGD   46 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~   46 (258)
                      +|.+. ..|....+..+.+++|.|.+.++ |. ..|.|.++|..+...
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~   55 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILG   55 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCC
Confidence            56653 33444456778899999999985 33 379999998766543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.7e-05  Score=47.82  Aligned_cols=72  Identities=18%  Similarity=0.383  Sum_probs=41.2

Q ss_pred             CCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEE
Q psy14532         16 PGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      .++.++|.|.+.++ | ...|.|.++|............ ..          ..........|.|..- .......|+|.
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~-~~----------~dgtys~~S~L~v~~~-~w~~g~~ytC~   85 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPV-LD----------SDGSFFLYSKLTVDKS-RWQQGNVFSCS   85 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCE-EC----------TTSCEEEEEEEEEEHH-HHHTTCCEEEE
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceE-EC----------CCCCEEEEEEEEECHH-HcCCCCEEEEE
Confidence            47789999999985 4 3489999999865433111000 00          0001111223445444 33445579999


Q ss_pred             EEeCCc
Q psy14532         94 ATNKQG   99 (258)
Q Consensus        94 ~~~~~~   99 (258)
                      +.+...
T Consensus        86 V~H~~l   91 (102)
T d1l6xa2          86 VMHEAL   91 (102)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            998653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.92  E-value=2.7e-05  Score=47.72  Aligned_cols=68  Identities=24%  Similarity=0.320  Sum_probs=45.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEE--ec---CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKV--FP---NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~--~~---~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|++++|.|...+.....+.|++.  ++...            ...+...  ..   ..+|.|.++.. +|+|
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa   85 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP-GDSA   85 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG-GGCE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc-cccE
Confidence            4456788999999999876655557899983  22211            0011111  11   12589999998 9999


Q ss_pred             EEEEEEEe
Q psy14532        180 VYWCTATN  187 (258)
Q Consensus       180 ~y~C~~~~  187 (258)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (111)
T d1bd2d1          86 VYFCAAME   93 (111)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99998764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.91  E-value=6.4e-05  Score=46.34  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=45.7

Q ss_pred             CCCcceecCCcEEEEeeeCc-ccCceEEEEeCC--cccC-------------CCcceEEe--c---CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG-YPIESITWQKGV--QQLP-------------LNRRQKVF--P---NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~--~~~~-------------~~~~~~~~--~---~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++|+|.|.... .....+.||+..  ....             ...+....  .   ...|.|.++.. +|
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   84 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI-ED   84 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG-GG
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc-cc
Confidence            45577899999999998754 344568999832  2110             00111111  1   12599999998 99


Q ss_pred             CcEEEEEEEeCC
Q psy14532        178 RGVYWCTATNKQ  189 (258)
Q Consensus       178 ~g~y~C~~~~~~  189 (258)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (115)
T d1fo0a_          85 SAVYFCAMRGDY   96 (115)
T ss_dssp             CEEEEEEEECCC
T ss_pred             cccccceeecCC
Confidence            999999887543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.91  E-value=6.3e-05  Score=46.14  Aligned_cols=67  Identities=21%  Similarity=0.402  Sum_probs=45.0

Q ss_pred             CCcceecCCcEEEEeeeCcc--cCceEEEEeCCc--ccC------------CCcceEEec---CCeEEEEecccCCCCcE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQ--QLP------------LNRRQKVFP---NGTLLIENVQKDHDRGV  180 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~~--~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g~  180 (258)
                      +.+.+.+|++++|.|...+.  ....+.|++...  ...            ...+.....   +..|.|.++.. +|++.
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DsA~   86 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLES-EDEAD   86 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCc-ccCce
Confidence            45778899999999987653  345789998432  110            111222211   23699999997 99999


Q ss_pred             EEEEEEe
Q psy14532        181 YWCTATN  187 (258)
Q Consensus       181 y~C~~~~  187 (258)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (114)
T d2rhea_          87 YYCAAWN   93 (114)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecC
Confidence            9998764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=4.8e-05  Score=44.61  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=40.3

Q ss_pred             CCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcce-EEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        127 GEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRRQ-KVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       127 g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~~-~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ++.++|.|.+.| +|. ..++|.+++..+...... ....++++.+.   .+.. .+...|+|.|.+..
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~-~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKR-GDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEET-TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECC-CCCCEEEEEEEeCC
Confidence            457899999998 453 489999999876543222 12334443222   2333 56678999999864

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.91  E-value=2.6e-05  Score=48.10  Aligned_cols=70  Identities=19%  Similarity=0.265  Sum_probs=44.9

Q ss_pred             CCCcceecCCcEEEEeeeCc-ccCceEEEEeC--CcccC-------CCc--------ceEEecC---CeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG-YPIESITWQKG--VQQLP-------LNR--------RQKVFPN---GTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~--~~~~~-------~~~--------~~~~~~~---~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++|+|.|.... .....+.|++.  +..+.       ...        .......   ..|.|.++.. +|
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   85 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV-VD   85 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG-GG
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc-cc
Confidence            44567889999999998643 33456899983  22211       000        0111111   2589999987 99


Q ss_pred             CcEEEEEEEeCC
Q psy14532        178 RGVYWCTATNKQ  189 (258)
Q Consensus       178 ~g~y~C~~~~~~  189 (258)
                      +|.|.|.+....
T Consensus        86 sg~YyCa~~~~~   97 (114)
T d2ak4d1          86 SAVYFCALSGFY   97 (114)
T ss_dssp             CEEEEEEEECSB
T ss_pred             CCCceEeCCCCC
Confidence            999999876543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.90  E-value=1e-05  Score=49.84  Aligned_cols=69  Identities=19%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             CCCcceecCCcEEEEeeeCc--ccCceEEEEeC--Ccc----cCCCcceEEec---C--CeEEEEecccCCCCcEEEEEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG--YPIESITWQKG--VQQ----LPLNRRQKVFP---N--GTLLIENVQKDHDRGVYWCTA  185 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~--~~~----~~~~~~~~~~~---~--~~l~i~~~~~~~~~g~y~C~~  185 (258)
                      +..+.+.+|++++|.|...+  .....+.|++.  +..    +....+.....   .  ..|.|.+++. +|+|.|.|.+
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyCa~   85 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRV-EDSGTYKCQA   85 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeeccccc-CCcceEeeee
Confidence            44567789999999998854  23457999983  221    11222222211   1  2589999998 9999999998


Q ss_pred             EeC
Q psy14532        186 TNK  188 (258)
Q Consensus       186 ~~~  188 (258)
                      ...
T Consensus        86 ~~~   88 (113)
T d1vesa_          86 FYS   88 (113)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=1.6e-05  Score=48.30  Aligned_cols=68  Identities=19%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++..  ....            ...+....   .+..|.|.++.. +|++.|
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~-~DsA~Y   85 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEP-EDIATY   85 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG-GGCSEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcc-cCCEeE
Confidence            44567889999999998765444569999842  1110            11122221   123599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1a0ql1          86 YCLQYY   91 (106)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.89  E-value=3.2e-05  Score=47.14  Aligned_cols=67  Identities=24%  Similarity=0.333  Sum_probs=43.9

Q ss_pred             CCCcceecCCcEEEEeeeCcc-cCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-PIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGV  180 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~  180 (258)
                      +..+.+.+|++++|.|..... ....+.|++..  ....            ...+....   ....|.|.++.. +|+|.
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~-~Dsa~   86 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEP-EDFAV   86 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCSE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHhee-cccEE
Confidence            445678899999999987543 34468999842  2110            11111111   112599999998 99999


Q ss_pred             EEEEEE
Q psy14532        181 YWCTAT  186 (258)
Q Consensus       181 y~C~~~  186 (258)
                      |.|.+.
T Consensus        87 YyCa~~   92 (108)
T d2fx7l1          87 YYCQQY   92 (108)
T ss_dssp             EEEEEC
T ss_pred             EeeecC
Confidence            999764

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=4.1e-05  Score=46.06  Aligned_cols=72  Identities=17%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             CCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEE
Q psy14532         16 PGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      ..+.++|.|.+.++ | ...|.|+++|........... ....        .  ........|.|..- .......|+|.
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~-~~~~--------d--gt~s~~S~L~v~~~-~w~~~~~ytC~   85 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPP-TMDT--------D--GSYFLYSKLNVKKE-TWQQGNTFTCS   85 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCC-EECT--------T--SCEEEEEEEEEEHH-HHHTTCCEEEE
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEccc-EeCC--------C--CCEEEEEEEEECHH-HhCCCCEEEEE
Confidence            35689999999986 3 348999999987643311100 0000        0  01111223555554 44456689999


Q ss_pred             EEeCCc
Q psy14532         94 ATNKQG   99 (258)
Q Consensus        94 ~~~~~~   99 (258)
                      +.+...
T Consensus        86 V~H~~~   91 (102)
T d1i1ca2          86 VLHEGL   91 (102)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            998643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.89  E-value=2e-05  Score=48.73  Aligned_cols=70  Identities=20%  Similarity=0.307  Sum_probs=46.2

Q ss_pred             CCCcceecCCcEEEEeeeCc-ccCceEEEEeC--CcccC---------------CCcceEEec---C--CeEEEEecccC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG-YPIESITWQKG--VQQLP---------------LNRRQKVFP---N--GTLLIENVQKD  175 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~--~~~~~---------------~~~~~~~~~---~--~~l~i~~~~~~  175 (258)
                      +..+.+.+|+.++|.|.... .....+.|++.  +....               ...++....   +  .+|.|.+++. 
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~-   85 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT-   85 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG-
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc-
Confidence            45677889999999998743 34567999972  22111               111222211   1  2588999998 


Q ss_pred             CCCcEEEEEEEeCC
Q psy14532        176 HDRGVYWCTATNKQ  189 (258)
Q Consensus       176 ~~~g~y~C~~~~~~  189 (258)
                      +|+|.|.|.+....
T Consensus        86 ~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          86 EDSATYYCAFTLPP   99 (116)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             cccccceeeEecCC
Confidence            99999999877543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.3e-05  Score=45.60  Aligned_cols=63  Identities=19%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc----ceEEecCCeE---EEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR----RQKVFPNGTL---LIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~----~~~~~~~~~l---~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.| +| ...++|.+||..+....    ......++++   ....+.. .+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~-~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP-GEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT-TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC-CCCCEEEEEEEeCC
Confidence            3567899999998 46 44999999998765321    1122333332   2223444 56678999999873

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=2.9e-05  Score=47.36  Aligned_cols=67  Identities=18%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             CCcceecCCcEEEEeeeCccc---CceEEEEeC--CcccC------------CCcceEE---ecCCeEEEEecccCCCCc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP---IESITWQKG--VQQLP------------LNRRQKV---FPNGTLLIENVQKDHDRG  179 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~--~~~~~------------~~~~~~~---~~~~~l~i~~~~~~~~~g  179 (258)
                      +.+.+.+|++++|.|...+..   .--+.|++.  ++...            ...++..   ..+..|.|.++.. +|+|
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~-~Dsa   86 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT-EDEA   86 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG-GGCE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc-cccE
Confidence            346688999999999886432   224889973  22211            1112221   1123699999997 9999


Q ss_pred             EEEEEEEe
Q psy14532        180 VYWCTATN  187 (258)
Q Consensus       180 ~y~C~~~~  187 (258)
                      .|.|....
T Consensus        87 ~YyCa~~~   94 (110)
T d1oaql_          87 IYFCALWY   94 (110)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEccc
Confidence            99998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.85  E-value=1.7e-05  Score=48.24  Aligned_cols=67  Identities=16%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEE---ecCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKV---FPNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~---~~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++|+|.|.........+.|++..  +...            ...+...   ..+..|.|.+++. +|+|.|
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEP-EDIATY   86 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCS-CCCSEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeee-cCCCcE
Confidence            45567889999999998766555579999842  2110            0011111   1123699999997 999999


Q ss_pred             EEEEE
Q psy14532        182 WCTAT  186 (258)
Q Consensus       182 ~C~~~  186 (258)
                      .|...
T Consensus        87 yCa~~   91 (107)
T d3cx5k1          87 FCQHH   91 (107)
T ss_dssp             EEEEC
T ss_pred             EeeeC
Confidence            99654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=3.9e-05  Score=47.57  Aligned_cols=70  Identities=20%  Similarity=0.354  Sum_probs=46.9

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC-----------------CCcceEEec-C---CeEEEEecccC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP-----------------LNRRQKVFP-N---GTLLIENVQKD  175 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~-----------------~~~~~~~~~-~---~~l~i~~~~~~  175 (258)
                      +....+.+|++++|.|...+.....+.|+|.  ++.+.                 ...+..... +   ..|.|.++.. 
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~-   86 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP-   86 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG-
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc-
Confidence            3456788999999999986655568999983  22111                 011222211 1   2589999997 


Q ss_pred             CCCcEEEEEEEeCC
Q psy14532        176 HDRGVYWCTATNKQ  189 (258)
Q Consensus       176 ~~~g~y~C~~~~~~  189 (258)
                      +|+|.|.|.+....
T Consensus        87 ~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          87 EDSGFYVCSALAGS  100 (118)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccCceEEEEEecCC
Confidence            99999999886543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.84  E-value=1.9e-05  Score=45.72  Aligned_cols=62  Identities=15%  Similarity=0.224  Sum_probs=42.0

Q ss_pred             CcEEEEeeeCcc-c-CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532        128 EPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       128 ~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +.+.|.|.+.++ | ...+.|.+++.............++++..........+..|+|.|.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEECC
Confidence            567899999884 4 3488999998776554444455566544443332255668999999863

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=6.1e-05  Score=46.48  Aligned_cols=70  Identities=19%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             CCCcceecCCcEEEEeeeCc---cc---CceEEEEeCCccc---------------CCCcceEEe-----cCCeEEEEec
Q psy14532        119 MGNVSAIAGEPLYLGCPVAG---YP---IESITWQKGVQQL---------------PLNRRQKVF-----PNGTLLIENV  172 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~---~~---~~~i~W~~~~~~~---------------~~~~~~~~~-----~~~~l~i~~~  172 (258)
                      +..+.+.+|+.|.|.|.+..   .+   ...+.|++.....               ....+..+.     .+.+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            45577899999999998642   11   2356677643211               011222222     2336999999


Q ss_pred             ccCCCCcEEEEEEEeCC
Q psy14532        173 QKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       173 ~~~~~~g~y~C~~~~~~  189 (258)
                      +. +|+|.|.|.+....
T Consensus        87 ~~-~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KP-EDSGTYNFRFEISD  102 (118)
T ss_dssp             CG-GGCEEEEEEEECC-
T ss_pred             Ch-hHCEEEEEEEEeCC
Confidence            98 99999999997653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.83  E-value=3.2e-05  Score=47.11  Aligned_cols=68  Identities=22%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEEE
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVYW  182 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y~  182 (258)
                      +.+.+.+|++++|.|.........+.|++..  ....            ...+....   ....|.|.+++. +|++.|.
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DsavYy   86 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEA-GDEADYY   86 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeecc-CCCEEEE
Confidence            4567889999999998765444579999742  2110            01111111   122588999998 9999999


Q ss_pred             EEEEeC
Q psy14532        183 CTATNK  188 (258)
Q Consensus       183 C~~~~~  188 (258)
                      |.+...
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            987654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.83  E-value=3.6e-05  Score=47.11  Aligned_cols=69  Identities=20%  Similarity=0.321  Sum_probs=45.3

Q ss_pred             CCCcceecCCcEEEEeeeCcc--cCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY--PIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~~g  179 (258)
                      ++.+.+.+|++++|.|...+.  ....+.|++..  ....            ...+.....   ...|.|.+++. +|+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsa   85 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQT-GDEA   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG-GGCS
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecc-ccCc
Confidence            345788899999999987543  23469999742  1110            111222211   23699999997 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.83  E-value=4.3e-05  Score=46.78  Aligned_cols=68  Identities=21%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             CCCcceecCCcEEEEeeeCcc----cCceEEEEeC--CcccC------------CCcceEEec---CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY----PIESITWQKG--VQQLP------------LNRRQKVFP---NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~----~~~~i~W~~~--~~~~~------------~~~~~~~~~---~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++|+|.|.....    ....+.|++.  +....            ...+.....   +..|.|.++.. +|
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   86 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA-DD   86 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG-GG
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc-cc
Confidence            345667899999999976421    2335999984  32211            111222222   12599999997 99


Q ss_pred             CcEEEEEEEe
Q psy14532        178 RGVYWCTATN  187 (258)
Q Consensus       178 ~g~y~C~~~~  187 (258)
                      +|.|.|.+.+
T Consensus        87 sa~YyCa~~~   96 (111)
T d1j05a_          87 VATYYCQQTN   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CccEEEeecC
Confidence            9999997653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.82  E-value=4.4e-05  Score=46.67  Aligned_cols=67  Identities=19%  Similarity=0.389  Sum_probs=43.5

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC---------------CCcceEE----ecCCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP---------------LNRRQKV----FPNGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~---------------~~~~~~~----~~~~~l~i~~~~~~~~  177 (258)
                      +....+.+|++++|.|...+ ....+.|+|.  +....               ...+...    ..+..|.|.++.. +|
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   85 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP-SQ   85 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG-GG
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH-hh
Confidence            44567889999999998754 3457999983  22110               0001110    1123588889987 99


Q ss_pred             CcEEEEEEEe
Q psy14532        178 RGVYWCTATN  187 (258)
Q Consensus       178 ~g~y~C~~~~  187 (258)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=4.1e-05  Score=45.96  Aligned_cols=83  Identities=12%  Similarity=0.181  Sum_probs=44.5

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI   78 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   78 (258)
                      .|.+. ..+.. ....++.++|.|.+.++ | ...|.|.+++.......      .. ....    .+  .......|.|
T Consensus         5 aP~V~~l~p~~-~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~------~~-~~~~----~g--~~s~~S~L~v   70 (101)
T d1kcvh2           5 APSVFPLVPGS-ATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLT------VS-AVLQ----SG--LYTLSSNTTV   70 (101)
T ss_dssp             CCEEEEECCCS-CCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE------CC-CEEE----TT--EEEEEEEEEE
T ss_pred             CCEEEeECCCc-cccCCCeEEEEEEEEEEeCCCCEEEEecCCCccccee------ee-eecC----CC--CEEEEEEEEE
Confidence            45553 33332 23468899999999985 3 34899988764322110      00 0000    00  1111223455


Q ss_pred             eecccCCCceEEEEEEEeCCcc
Q psy14532         79 ENVQKDHDRGVYWCTATNKQGR  100 (258)
Q Consensus        79 ~~~~~~~d~G~Y~C~~~~~~~~  100 (258)
                      ..- .. +.|.|+|.+.+....
T Consensus        71 ~~~-~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          71 ASG-TW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             ETT-TT-TTSCCEEEEEEGGGT
T ss_pred             chh-hc-CCCeEEEEEEeCCCC
Confidence            433 33 467899999987643

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=2.7e-05  Score=46.86  Aligned_cols=40  Identities=20%  Similarity=0.498  Sum_probs=23.4

Q ss_pred             CCCcce-eeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCE
Q psy14532          1 SHPQLI-YKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGY   41 (258)
Q Consensus         1 ~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~   41 (258)
                      ++|.+. ..+... ...++.++|.|.+.++ | ...|.|.+++.
T Consensus         4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~   46 (102)
T d1mjuh2           4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSL   46 (102)
T ss_dssp             BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCc
Confidence            467764 333322 2467899999999985 3 34899977663

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=1.3e-05  Score=48.90  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++..  +...            ...+....   ....|.|.++.. +|+|.|
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~DSa~Y   86 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLP-EDFGSY   86 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccc-cCCeeE
Confidence            44566788999999998865445569999832  2111            00111111   122599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        87 yCA~~~   92 (109)
T d1mqkl_          87 YCQHHY   92 (109)
T ss_dssp             EEEECS
T ss_pred             EEeeeC
Confidence            997653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.80  E-value=4.3e-05  Score=46.71  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEE--ec---CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKV--FP---NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~--~~---~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|++++|.|.........+.|+|.  ++.+.            ...+...  ..   ...|.|.++.. +|+|
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~-~Dsa   85 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE-SDSA   85 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG-GGCE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc-CCCc
Confidence            4456788999999999875444457999983  22211            0011111  11   12589999997 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (110)
T d1ac6a_          86 VYYCALSGG   94 (110)
T ss_dssp             EEEEEEEET
T ss_pred             ccceeecCC
Confidence            999987653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.80  E-value=3.8e-05  Score=45.68  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=38.5

Q ss_pred             ecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCeEEE---EecccCCCCcEEEEEEEeCC
Q psy14532        125 IAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGTLLI---ENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~l~i---~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..++..+|.|.+.|+ | ...|.|.++|..+..+..   .....++++.+   ..+.. .+...|+|.+.+..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTP-QRGDVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCS-CTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCC-CCCCEEEEEEEeCC
Confidence            345677899999884 5 458999999876553321   12233444322   23444 66779999999874

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.78  E-value=6.4e-05  Score=45.93  Aligned_cols=68  Identities=19%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             CCCcceecCCcEEEEeeeCcc----cCceEEEEeC--CcccC------------CCcceEEe---cCCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY----PIESITWQKG--VQQLP------------LNRRQKVF---PNGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~----~~~~i~W~~~--~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++|+|.|.....    ....+.|++.  +....            ...+....   ....|.|.++.. +|
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~-~D   86 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE-ED   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc-cC
Confidence            445678899999999976431    1234899984  22211            01122221   123589999998 99


Q ss_pred             CcEEEEEEEe
Q psy14532        178 RGVYWCTATN  187 (258)
Q Consensus       178 ~g~y~C~~~~  187 (258)
                      ++.|.|.+..
T Consensus        87 sA~YyCa~~~   96 (111)
T d2gsia1          87 AATYYCSHIR   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEECC
Confidence            9999997643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.5e-05  Score=44.63  Aligned_cols=44  Identities=20%  Similarity=0.355  Sum_probs=26.9

Q ss_pred             CCcce-eeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcC
Q psy14532          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAG   45 (258)
Q Consensus         2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~   45 (258)
                      +|.+. ..+........+.++|.|.+.++ |. ..|.|.+++..+..
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~   51 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDIS   51 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEEC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccC
Confidence            56553 33333344557889999999985 43 48999998765543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.76  E-value=5.2e-05  Score=46.58  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=44.6

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------CC-----c-ceEE----ecCCeEEEEecccCCCCcE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------LN-----R-RQKV----FPNGTLLIENVQKDHDRGV  180 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------~~-----~-~~~~----~~~~~l~i~~~~~~~~~g~  180 (258)
                      +..+.+.+|+.++|.|.... ....+.||+..  ..+.      ..     . ....    .....|.|.++.. +|+|.
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~   85 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL-EDSGT   85 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG-GGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH-hHCEE
Confidence            45567889999999999765 33469999832  2110      00     0 0000    0112589999997 99999


Q ss_pred             EEEEEEeCC
Q psy14532        181 YWCTATNKQ  189 (258)
Q Consensus       181 y~C~~~~~~  189 (258)
                      |.|.+....
T Consensus        86 YyCa~~~~~   94 (113)
T d1h5ba_          86 YFCAAEASS   94 (113)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCCC
Confidence            999876543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.75  E-value=6.1e-06  Score=50.04  Aligned_cols=72  Identities=15%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             CCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEE
Q psy14532         16 PGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT   93 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~   93 (258)
                      .++.++|.|.+.++ | ...|.|+++|..+............         .  ........|.|..- ...+...|+|.
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~---------~--~tys~~S~l~v~~~-~w~~~~~ytC~   86 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQ---------G--QNYMTSSYLSLTAD-QWKSHNRVSCQ   86 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCS---------S--SCEEEEEBCCEEHH-HHHTCSCEEEE
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCC---------C--ceEEEEEEEEEcHH-HcCCCCEEEEE
Confidence            45679999999985 4 3489999999877644221110000         0  00111223445444 44455689999


Q ss_pred             EEeCCc
Q psy14532         94 ATNKQG   99 (258)
Q Consensus        94 ~~~~~~   99 (258)
                      +.+...
T Consensus        87 V~H~~~   92 (104)
T d1nfde2          87 VTHEGE   92 (104)
T ss_dssp             EECTTT
T ss_pred             EEECCC
Confidence            998654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.74  E-value=6.7e-05  Score=45.97  Aligned_cols=69  Identities=17%  Similarity=0.338  Sum_probs=44.8

Q ss_pred             CCCcceecCCcEEEEeeeCccc---CceEEEEeCC--cccC------------CCcceEE---ecCCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP---IESITWQKGV--QQLP------------LNRRQKV---FPNGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~~--~~~~------------~~~~~~~---~~~~~l~i~~~~~~~~~  178 (258)
                      +..+.+.+|++|+|.|...+..   ...+.|+|..  ....            ...+...   ..+..|.|.+++. +|+
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Ds   85 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQA-EDE   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCG-GGC
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcc-ccC
Confidence            4457788999999999876532   2358999842  2110            0111111   1223599999997 999


Q ss_pred             cEEEEEEEeC
Q psy14532        179 GVYWCTATNK  188 (258)
Q Consensus       179 g~y~C~~~~~  188 (258)
                      +.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (112)
T d1lgva1          86 ADYYCSSYDG   95 (112)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEeeecC
Confidence            9999987653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=6.1e-05  Score=46.38  Aligned_cols=68  Identities=22%  Similarity=0.337  Sum_probs=44.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEE--ec---CCeEEEEecccCCCCc
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKV--FP---NGTLLIENVQKDHDRG  179 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~--~~---~~~l~i~~~~~~~~~g  179 (258)
                      +..+.+.+|++++|.|...+. ...+.||+..  ....            ...+...  ..   ...|.|.++.. +|+|
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa   84 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP-GDTG   84 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG-GGCE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc-ccee
Confidence            345678899999999987653 3479999832  2111            0011111  11   12589999997 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|.|.+...
T Consensus        85 ~YyCa~~~~   93 (115)
T d1ogad1          85 LYLCAGAGS   93 (115)
T ss_dssp             EEEEEEECT
T ss_pred             eEcccccCC
Confidence            999987643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=8e-06  Score=48.67  Aligned_cols=68  Identities=24%  Similarity=0.471  Sum_probs=44.3

Q ss_pred             CcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEEe-----cCCeEEEEecccCCCCcEE
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKVF-----PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~-----~~~~l~i~~~~~~~~~g~y  181 (258)
                      .+.+.+|++|+|.|.... ....+.|+|.  ++.+.            ...+..+.     ....|.|.++.. +|+|.|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~Dsa~Y   79 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA-ADTASY   79 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCS-TTCSCC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCc-ccCEEE
Confidence            356789999999998754 3347999983  22211            11111111     112589999997 999999


Q ss_pred             EEEEEeCCC
Q psy14532        182 WCTATNKQG  190 (258)
Q Consensus       182 ~C~~~~~~~  190 (258)
                      .|.+....+
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998876543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.73  E-value=8.3e-05  Score=45.46  Aligned_cols=68  Identities=16%  Similarity=0.303  Sum_probs=44.4

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC------------CCcceEEe--c---CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP------------LNRRQKVF--P---NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~------------~~~~~~~~--~---~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++++|.|...+..  ..-+.|+|..  +...            ...+....  .   ...|.|.+++. +|
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~D   85 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT-ED   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc-cc
Confidence            3457788999999999876532  3358999842  2110            11222221  1   12589999997 99


Q ss_pred             CcEEEEEEEe
Q psy14532        178 RGVYWCTATN  187 (258)
Q Consensus       178 ~g~y~C~~~~  187 (258)
                      ++.|.|....
T Consensus        86 sa~YyCA~~~   95 (111)
T d1cd0a_          86 EADYYCQSYD   95 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeecc
Confidence            9999998654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.71  E-value=0.00012  Score=43.87  Aligned_cols=65  Identities=15%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             eecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc--eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR--QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      +..|+..+|.|.+.| +| ...|.|.+++..+.....  .....++++.+.   .+.. ++...|+|.|.+..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~-~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP-EPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC-CTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec-CCCCEEEEEEEeCC
Confidence            345778899999998 45 358999999887543222  222345554433   2334 55568999999974

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.5e-05  Score=47.63  Aligned_cols=66  Identities=18%  Similarity=0.342  Sum_probs=42.3

Q ss_pred             ceecCCcEEEEeeeCcc-cC-ceEEEEeCCcccCCCcceE----E---ecCC------eEEEEecccCCCCcEEEEEEEe
Q psy14532        123 SAIAGEPLYLGCPVAGY-PI-ESITWQKGVQQLPLNRRQK----V---FPNG------TLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~~~~~~~~~~~----~---~~~~------~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      .+..++.++|.|.+.++ |. ..|.|+++|..+.......    .   ..++      .|.|..-.. ..+..|+|+|.+
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w-~~g~~ytC~V~H   94 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW-KKGDTFSCMVGH   94 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH-HHTCCEEEEEEC
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh-CCCCEEEEEEEe
Confidence            34567889999999884 53 3899999988765432111    0   1233      344443333 446699999998


Q ss_pred             CC
Q psy14532        188 KQ  189 (258)
Q Consensus       188 ~~  189 (258)
                      ..
T Consensus        95 ~s   96 (108)
T d1ow0a2          95 EA   96 (108)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00013  Score=40.75  Aligned_cols=79  Identities=27%  Similarity=0.360  Sum_probs=51.8

Q ss_pred             cceecCCcEEEEeeeCc-ccCceEEEEe-CCcc---cCCC-cceEE-ecCC-----eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        122 VSAIAGEPLYLGCPVAG-YPIESITWQK-GVQQ---LPLN-RRQKV-FPNG-----TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~-~~~~~i~W~~-~~~~---~~~~-~~~~~-~~~~-----~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..+..|+...|.|.+.. ...|.++|-+ ++..   +... +..+. .+++     .|.+.++.. +|.|.|+|.+....
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~-sDnGsYrCSanf~s   91 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL-SDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCG-GGCEEEEEEEEETT
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeee-cCCCceEEecCCCh
Confidence            45778999999999864 4578999988 3332   2211 11111 1122     366678887 99999999998776


Q ss_pred             CCCccceEEEEe
Q psy14532        190 GRSSSQNVHISV  201 (258)
Q Consensus       190 ~~~~~~~~~l~v  201 (258)
                      +-..+.++.+.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            544555555544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=6.3e-05  Score=45.48  Aligned_cols=64  Identities=19%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc----eEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR----QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~----~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .++.++|.|.+.+ +| ...|.|.++|..+.....    .....+++      |.|..-.. ..+..|+|.|.+...
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W-~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEW-EQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHH-TTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHc-CCCCEEEEEEEECCC
Confidence            4568999999988 45 359999999887654321    11123333      44444333 455689999998643

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=8.5e-05  Score=43.33  Aligned_cols=63  Identities=21%  Similarity=0.316  Sum_probs=39.4

Q ss_pred             cCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.|+ | ...|+|.++|..+..+..   .....+++..+.   .+.. .+...|+|.|.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~-~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL-GKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES-STTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC-cCCCEEEEEEEECC
Confidence            35689999999984 4 348899999987654322   122333332221   2233 45557999999864

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.68  E-value=5.6e-05  Score=44.80  Aligned_cols=63  Identities=22%  Similarity=0.329  Sum_probs=40.3

Q ss_pred             cCCcEEEEeeeCc-ccCc-eEEEEeCCcccCCCcc--eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRR--QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~~~~~~--~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.| +|.. .++|.+++........  .....++++.+.   .+.. ++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~-~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD-GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG-GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC-ccCCEEEEEEEeCC
Confidence            3467999999988 5644 8999998876543221  223344443222   2333 55668999999864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.68  E-value=4.3e-05  Score=45.99  Aligned_cols=63  Identities=17%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc--eEEecCC------eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR--QKVFPNG------TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~--~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.+.|.|.+.+ +| ...|.|.++|........  .....++      .|.|..-.. ..+..|+|.|.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W-~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNW-VERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHc-CCCCEEEEEEEeCC
Confidence            4678999999988 45 358999999875432211  1112333      344443333 45668999999864

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.67  E-value=0.00014  Score=43.15  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             CCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE---EEeecccCCCceEE
Q psy14532         16 PGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL---LIENVQKDHDRGVY   90 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~i~~~~~~~d~G~Y   90 (258)
                      ....++|.|.+.++ | ...|.|.++|+.+............            .....+++.   ....+ ...+...|
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~------------~~~~~dgty~~~s~l~v-~~~~~~~y   79 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHD------------PLPSGNGLYQKHIDVYV-DGGLEHVY   79 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCC------------CEECSSSCEEEEEEEEE-CTTCGGGE
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcc------------eeeCCCCEEEEEEEEEE-CCCCCCEE
Confidence            34579999999996 3 3489999988765432111100000            011123332   13344 55566789


Q ss_pred             EEEEEeCCc
Q psy14532         91 WCTATNKQG   99 (258)
Q Consensus        91 ~C~~~~~~~   99 (258)
                      +|.+.+...
T Consensus        80 tC~V~H~s~   88 (98)
T d1u58a1          80 SCRVKGIAT   88 (98)
T ss_dssp             EEEEEEGGG
T ss_pred             EEEEEeCCC
Confidence            999987543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.67  E-value=6.2e-05  Score=46.12  Aligned_cols=68  Identities=19%  Similarity=0.342  Sum_probs=44.5

Q ss_pred             CCCcceecCCcEEEEeeeCccc-CceEEEEeC--CcccC------------CCcceEEecC---CeEEEEecccCCCCcE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQKG--VQQLP------------LNRRQKVFPN---GTLLIENVQKDHDRGV  180 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~~--~~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~  180 (258)
                      +..+.+.+|++|+|.|...+.. ...+.|+|.  ++.+.            ...+..+..+   ..|.|.++.. +|+|.
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~Dsa~   83 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATL-RDAAV   83 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCG-GGCEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccc-cccee
Confidence            3456788999999999876533 345899984  22221            0011222222   2588999987 99999


Q ss_pred             EEEEEEe
Q psy14532        181 YWCTATN  187 (258)
Q Consensus       181 y~C~~~~  187 (258)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9997754

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=6.2e-05  Score=46.55  Aligned_cols=68  Identities=22%  Similarity=0.306  Sum_probs=44.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|...+.....+.|++..  ....            ...+....   ....|.|.++.. +|+|.|
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~DsavY   86 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQP-EDVATY   86 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCG-GGCSEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCcc-CCCeEE
Confidence            34567889999999998765444569999842  2110            11111111   112599999998 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|....
T Consensus        87 yCa~~~   92 (119)
T d1f3rb2          87 FCYQYN   92 (119)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            997653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.66  E-value=3.8e-05  Score=46.70  Aligned_cols=68  Identities=21%  Similarity=0.362  Sum_probs=44.7

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.........+.|++.  +..+.            ...++...   .+..|.|.++.. +|+|.|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~-~Dsa~Y   84 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQP-EDEAAY   84 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCSEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccc-cCCceE
Confidence            3456788999999999875544456899983  22110            11122221   123688999987 999999


Q ss_pred             EEEEEe
Q psy14532        182 WCTATN  187 (258)
Q Consensus       182 ~C~~~~  187 (258)
                      .|.+..
T Consensus        85 yCA~~~   90 (108)
T d1nfde1          85 YCLSSY   90 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            998764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.66  E-value=0.00022  Score=43.57  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=42.4

Q ss_pred             CCCcceecCCcEEEEeeeCcc-----cCceEEEEeCC--cccC------------CCcceEEecC---CeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-----PIESITWQKGV--QQLP------------LNRRQKVFPN---GTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-----~~~~i~W~~~~--~~~~------------~~~~~~~~~~---~~l~i~~~~~~~  176 (258)
                      ++.+.+.+|++|+|.|...+.     ....+.|++..  ....            ...+.....+   ..|.|.++.. +
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~-~   86 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA-E   86 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc-c
Confidence            445678899999999987542     23468999742  2211            0111211111   2599999997 9


Q ss_pred             CCcEEEEEE
Q psy14532        177 DRGVYWCTA  185 (258)
Q Consensus       177 ~~g~y~C~~  185 (258)
                      |++.|.|..
T Consensus        87 DsAvYyCa~   95 (112)
T d1mjul1          87 DVGVYYCLQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceEEEEe
Confidence            999999954

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.64  E-value=0.00014  Score=44.53  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=43.3

Q ss_pred             CCCcceecCCcEEEEeeeCcc-----cCceEEEEeCC--cccC------------CCcceEEec---CCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-----PIESITWQKGV--QQLP------------LNRRQKVFP---NGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-----~~~~i~W~~~~--~~~~------------~~~~~~~~~---~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|++++|.|...+.     ....+.|++..  ....            ...+.....   +..|.|.++.. +
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~   87 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA-E   87 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc-c
Confidence            445678899999999987432     22468999842  2111            111222211   12699999998 9


Q ss_pred             CCcEEEEEEE
Q psy14532        177 DRGVYWCTAT  186 (258)
Q Consensus       177 ~~g~y~C~~~  186 (258)
                      |++.|.|...
T Consensus        88 DsavYyCa~~   97 (113)
T d1n4xl_          88 DLGIYYCFQG   97 (113)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEEEEEEEC
Confidence            9999999644

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.61  E-value=0.00015  Score=44.29  Aligned_cols=67  Identities=24%  Similarity=0.341  Sum_probs=42.2

Q ss_pred             CCCcceecCCcEEEEeeeCcc-----cCceEEEEeCC--cccC------------CCcceEEe---cCCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY-----PIESITWQKGV--QQLP------------LNRRQKVF---PNGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~-----~~~~i~W~~~~--~~~~------------~~~~~~~~---~~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|++|+|.|...+.     ...-+.|++..  ....            ...+....   .+..|.|.++.. +
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~-e   86 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA-E   86 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc-C
Confidence            455678899999999986432     22358899742  2110            11112111   112599999997 9


Q ss_pred             CCcEEEEEEE
Q psy14532        177 DRGVYWCTAT  186 (258)
Q Consensus       177 ~~g~y~C~~~  186 (258)
                      |++.|.|...
T Consensus        87 DsAvYYC~~~   96 (112)
T d1ncwl1          87 DLGVYYCWQG   96 (112)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEeEEEEcC
Confidence            9999999543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.59  E-value=0.00014  Score=44.71  Aligned_cols=68  Identities=18%  Similarity=0.295  Sum_probs=44.2

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC---------------CCcceEE----ecCCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP---------------LNRRQKV----FPNGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~---------------~~~~~~~----~~~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++++|.|.... ....+.||+..  +.+.               .......    .....|.|.++.. +|
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   83 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK-NP   83 (114)
T ss_dssp             CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS-CC
T ss_pred             CCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc-CC
Confidence            34567889999999998753 34579999842  1110               0001111    1123599999997 99


Q ss_pred             CcEEEEEEEeC
Q psy14532        178 RGVYWCTATNK  188 (258)
Q Consensus       178 ~g~y~C~~~~~  188 (258)
                      +|.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999976643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8.4e-05  Score=44.65  Aligned_cols=63  Identities=19%  Similarity=0.413  Sum_probs=40.1

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc--ceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR--RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~--~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.+ +| ...++|.+++.......  ......+++      |.|..-.. ..+..|+|+|.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w-~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHc-CCCCEEEEEEEeCC
Confidence            4678999999988 45 35999999987644221  112223443      44443333 44558999999964

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0001  Score=44.28  Aligned_cols=63  Identities=14%  Similarity=0.325  Sum_probs=40.8

Q ss_pred             cCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.+. | ...|.|.++|..+.....   .....+++      |.|..-.. .....|+|+|.+..
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w-~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCCEEEEEEEETT
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            35678999999884 4 348999999876643221   11123343      45544443 56679999999864

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00016  Score=44.64  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=42.6

Q ss_pred             CCcceecCCcEEEEeeeCcccC---ceEEEEeCCc--ccC-------------CCcceE--Ee---cCCeEEEEecccCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPI---ESITWQKGVQ--QLP-------------LNRRQK--VF---PNGTLLIENVQKDH  176 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~---~~i~W~~~~~--~~~-------------~~~~~~--~~---~~~~l~i~~~~~~~  176 (258)
                      ..+.+.+|+.++|.|.......   ..+.|+|...  ...             ...+..  ..   ....|.|.++.. +
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~   85 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA-M   85 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG-G
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc-C
Confidence            3456778899999999754322   2588998432  111             000000  01   112599999998 9


Q ss_pred             CCcEEEEEEEeC
Q psy14532        177 DRGVYWCTATNK  188 (258)
Q Consensus       177 ~~g~y~C~~~~~  188 (258)
                      |.|.|.|.+...
T Consensus        86 Dsa~YyCa~~~~   97 (118)
T d1i8lc_          86 DTGLYICKVELM   97 (118)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             CCEEEEEeEecc
Confidence            999999988653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.55  E-value=0.00018  Score=44.52  Aligned_cols=69  Identities=20%  Similarity=0.320  Sum_probs=45.5

Q ss_pred             CCCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC------------CCcceEEec-----CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP------------LNRRQKVFP-----NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~------------~~~~~~~~~-----~~~l~i~~~~~~~~  177 (258)
                      ...+.+.+|++++|.|...+..  ...+.|++.  ++.+.            ...+.....     ...|.|.++.. +|
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~-~D   86 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE-RD   86 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG-GG
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc-cC
Confidence            4456788999999999986533  356999983  22111            112222211     13689999997 99


Q ss_pred             CcEEEEEEEeC
Q psy14532        178 RGVYWCTATNK  188 (258)
Q Consensus       178 ~g~y~C~~~~~  188 (258)
                      +|.|.|.....
T Consensus        87 sa~YyCA~~~~   97 (120)
T d1hxma1          87 EGSYYCACDTL   97 (120)
T ss_dssp             CEEEEEEEECC
T ss_pred             CceeecCcccC
Confidence            99999986543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.55  E-value=0.00015  Score=44.37  Aligned_cols=67  Identities=24%  Similarity=0.254  Sum_probs=43.5

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC----------------CCcceEEe----cCCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP----------------LNRRQKVF----PNGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~----------------~~~~~~~~----~~~~l~i~~~~~~~  176 (258)
                      +....+.+|++++|.|.... ....+.|++.  ++...                ...+....    ....|.|.++.. +
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~   83 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ-E   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG-G
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc-C
Confidence            34566889999999998643 3457999983  22110                01111111    113589999997 9


Q ss_pred             CCcEEEEEEEe
Q psy14532        177 DRGVYWCTATN  187 (258)
Q Consensus       177 ~~g~y~C~~~~  187 (258)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00034  Score=42.40  Aligned_cols=67  Identities=16%  Similarity=0.303  Sum_probs=44.3

Q ss_pred             cceecCCcEEEEeeeCcc--cCceEEEEeC--Cccc----CC-----------CcceEEecC-----CeEEEEecccCCC
Q psy14532        122 VSAIAGEPLYLGCPVAGY--PIESITWQKG--VQQL----PL-----------NRRQKVFPN-----GTLLIENVQKDHD  177 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~--~~~~i~W~~~--~~~~----~~-----------~~~~~~~~~-----~~l~i~~~~~~~~  177 (258)
                      ..+.+|++++|.|...+.  ..-.+.|+|.  ++..    ..           ..++.+..+     -+|.|.+++. +|
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~-eD   83 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV-TD   83 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG-GG
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc-CC
Confidence            457899999999998753  3457889984  2210    00           112333221     1488889997 99


Q ss_pred             CcEEEEEEEeCC
Q psy14532        178 RGVYWCTATNKQ  189 (258)
Q Consensus       178 ~g~y~C~~~~~~  189 (258)
                      +|.|.|.+....
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999886543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.0001  Score=44.71  Aligned_cols=63  Identities=17%  Similarity=0.345  Sum_probs=40.8

Q ss_pred             cCCcEEEEeeeCcc-cC-ceEEEEeCCcccCCCcceEE----ecCC------eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAGY-PI-ESITWQKGVQQLPLNRRQKV----FPNG------TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-~~-~~i~W~~~~~~~~~~~~~~~----~~~~------~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.+.|.|.+.+. |. ..|+|.+|+...........    ..++      .|.|..-.+ .....|+|.|.+..
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W-~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            45789999999884 53 48999999876654322111    1233      355544433 45568999999864

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.00013  Score=45.02  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=41.7

Q ss_pred             CCcceecCCcEEEEeeeCccc---CceEEEEeCC--cccC-------CC------cc--eEE---ecCCeEEEEecccCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP---IESITWQKGV--QQLP-------LN------RR--QKV---FPNGTLLIENVQKDH  176 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~---~~~i~W~~~~--~~~~-------~~------~~--~~~---~~~~~l~i~~~~~~~  176 (258)
                      ..+.+.+|+.++|.|......   ...+.|+|..  +...       ..      .+  ...   .....|.|.+++. +
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~   85 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA-V   85 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG-G
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc-c
Confidence            345667899999999974322   2247899832  2110       00      00  000   1123699999998 9


Q ss_pred             CCcEEEEEEEe
Q psy14532        177 DRGVYWCTATN  187 (258)
Q Consensus       177 ~~g~y~C~~~~  187 (258)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998864

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.50  E-value=0.00021  Score=43.24  Aligned_cols=68  Identities=13%  Similarity=0.241  Sum_probs=40.3

Q ss_pred             cceecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcce--EEecCCeEEE---EecccCCC-CcEEEEEEEeCCC
Q psy14532        122 VSAIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQ--KVFPNGTLLI---ENVQKDHD-RGVYWCTATNKQG  190 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~--~~~~~~~l~i---~~~~~~~~-~g~y~C~~~~~~~  190 (258)
                      .....+..++|.|.+.++ | ...++|.++|..+......  ....++++.+   ..+.. ++ ...|+|.|.+...
T Consensus        19 ~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~-~~w~~~ytC~V~H~s~   94 (107)
T d1hxmb2          19 AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPE-KSLDKEHRCIVRHENN   94 (107)
T ss_dssp             GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECT-GGGGSCEEEEEEETTS
T ss_pred             HHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEec-ccCCCeEEEEEEECCC
Confidence            345566789999999884 4 3489999998766532211  1122332211   12222 23 2379999999754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.50  E-value=0.00014  Score=44.38  Aligned_cols=67  Identities=19%  Similarity=0.379  Sum_probs=43.8

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC----------------CCcceEEec----CCeEEEEecccCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP----------------LNRRQKVFP----NGTLLIENVQKDH  176 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~----------------~~~~~~~~~----~~~l~i~~~~~~~  176 (258)
                      +..+.+.+|++++|.|...+ ....+.|||.  +....                ...+.....    ...|.|.++.. +
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~-~   83 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL-E   83 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc-C
Confidence            44567889999999998644 2357999974  22111                011122211    13699999997 9


Q ss_pred             CCcEEEEEEEe
Q psy14532        177 DRGVYWCTATN  187 (258)
Q Consensus       177 ~~g~y~C~~~~  187 (258)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (111)
T d2esve1          84 DSGVYFCASSQ   94 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCceEEEeeeC
Confidence            99999998654

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.00024  Score=42.58  Aligned_cols=64  Identities=19%  Similarity=0.467  Sum_probs=38.7

Q ss_pred             cCCcEEEEeeeCcc-cC--ceEEEEeCCcccCCCc-ceEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532        126 AGEPLYLGCPVAGY-PI--ESITWQKGVQQLPLNR-RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG  190 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-~~--~~i~W~~~~~~~~~~~-~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~  190 (258)
                      .++.+.|.|.+.++ |.  ..+.|.+++....... ......+++      |.|....+ .....|+|+|.+...
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W-~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVEC-PEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGS-CTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHc-cCCCEEEEEEEECCC
Confidence            46789999999984 54  3677877776543211 111223333      44444433 445689999998644

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00013  Score=43.14  Aligned_cols=62  Identities=18%  Similarity=0.315  Sum_probs=38.7

Q ss_pred             CCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcce---EEecCCeE---EEEecccCCCCcEEEEEEEeCC
Q psy14532        127 GEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQ---KVFPNGTL---LIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       127 g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~---~~~~~~~l---~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ++.++|.|.+.|+ | ...|+|.++|..+......   ....+++.   ....+.. .+...|+|+|.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~-~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS-GEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET-TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc-CCCCEEEEEEEECc
Confidence            4679999999985 4 3488999998876543211   11222321   1113333 55568999999863

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00015  Score=43.71  Aligned_cols=64  Identities=20%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             ecCCcEEEEeeeCc-ccCc-eEEEEeCCcccCCCcce--EEecCC------eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        125 IAGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRRQ--KVFPNG------TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       125 ~~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~~~~~~~--~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..+.+++|.|.+.+ +|.. .|+|.++|..+......  ....++      .|.|..-.+ .....|+|+|.+..
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w-~~~~~ytC~V~H~~   92 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW-LSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHH-HTTCCEEEEEEETT
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHc-CCCCEEEEEEEECC
Confidence            34567899999988 4543 89999998876533211  112233      355544333 45668999999864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.47  E-value=0.00026  Score=43.30  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=44.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC---------------CCcceEE-ec---CCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP---------------LNRRQKV-FP---NGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~---------------~~~~~~~-~~---~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++++|.|...+. ...+.|++.  ++...               ...+... ..   ...|.|.++.. +|
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   83 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL-GD   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG-GG
T ss_pred             CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc-cc
Confidence            344678899999999986542 357899983  22211               0111111 11   22599999997 99


Q ss_pred             CcEEEEEEEeC
Q psy14532        178 RGVYWCTATNK  188 (258)
Q Consensus       178 ~g~y~C~~~~~  188 (258)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (113)
T d2ntsp1          84 SALYLCASSLA   94 (113)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeeeeeeeCC
Confidence            99999987653

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.46  E-value=0.00029  Score=43.14  Aligned_cols=65  Identities=23%  Similarity=0.462  Sum_probs=42.6

Q ss_pred             CcceecCCcEEEEeeeCccc----CceEEEEeC--CcccC----------------CCcceEEecC-----CeEEEEecc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP----IESITWQKG--VQQLP----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~--~~~~~----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ...+.+|++|+|.|.+.|..    ...+.|+|.  ++.+.                ...++.+..+     ..|.|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            34567899999999986642    236889974  22211                1123344322     248999999


Q ss_pred             cCCCCcEEEEEEE
Q psy14532        174 KDHDRGVYWCTAT  186 (258)
Q Consensus       174 ~~~~~g~y~C~~~  186 (258)
                      . +|.+.|.|...
T Consensus        89 ~-eDsAvYyCAr~  100 (120)
T d2agjh1          89 P-VDTATYYCART  100 (120)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             e-ccceEEeeEec
Confidence            8 99999999643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.45  E-value=0.00034  Score=41.16  Aligned_cols=62  Identities=16%  Similarity=0.348  Sum_probs=38.9

Q ss_pred             CCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcce----EEecCCeEEE---EecccCCCCcEEEEEEEeCC
Q psy14532        127 GEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQ----KVFPNGTLLI---ENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       127 g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~----~~~~~~~l~i---~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ++.++|.|.+.++ | ...|+|.+++..+......    ....++++.+   ..+.. .+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~-~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ-GEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET-TCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEECC
Confidence            4578999999884 5 3489999998876543211    1123333222   12333 45568999999863

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.45  E-value=0.00032  Score=41.56  Aligned_cols=61  Identities=21%  Similarity=0.176  Sum_probs=38.4

Q ss_pred             CcEEEEeeeCcc-c-CceEEEEeCCcccCCC-------cceEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532        128 EPLYLGCPVAGY-P-IESITWQKGVQQLPLN-------RRQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       128 ~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~-------~~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..++|.|.+.|+ | ...|.|.+|+..+...       .......++++.+.   .+.. .+...|+|.|.+..
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~s   87 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG-GLEHVYSCRVKGIA   87 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT-TCGGGEEEEEEEGG
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC-CCCCEEEEEEEeCC
Confidence            478999999984 4 3489999988765321       11122344543332   3333 56678999999864

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.45  E-value=0.00034  Score=42.56  Aligned_cols=66  Identities=18%  Similarity=0.424  Sum_probs=44.6

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecCC-----eEEEEecccCC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPNG-----TLLIENVQKDH  176 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~~-----~l~i~~~~~~~  176 (258)
                      ..+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                ...+..+..+.     .|.|.+++. +
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~-e   87 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP-D   87 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG-G
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc-C
Confidence            4578899999999988754  336788874  22110                11344444332     488899998 9


Q ss_pred             CCcEEEEEEEeC
Q psy14532        177 DRGVYWCTATNK  188 (258)
Q Consensus       177 ~~g~y~C~~~~~  188 (258)
                      |.+.|.|.....
T Consensus        88 DtA~YYCAr~~~   99 (119)
T d1kxvc_          88 DTAMYYCKPSLR   99 (119)
T ss_dssp             GCEEEEEEEEES
T ss_pred             CcceEeeeeccc
Confidence            999999976543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00015  Score=40.82  Aligned_cols=64  Identities=20%  Similarity=0.379  Sum_probs=41.9

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENVQKDHDRGVYWCTATNK  188 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~  188 (258)
                      ....|.+|+|+|...  ....|.|.+++..+.....  ........|.+.+.+.-+++|.|.|.+...
T Consensus         6 VsISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           6 VSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             EEEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             EEEeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCC
Confidence            345789999999753  3467999998876653211  112233456666654326899999998654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.44  E-value=0.00031  Score=43.40  Aligned_cols=67  Identities=21%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             CCcceecCCcEEEEeeeCcc--cCceEEEEeC--CcccC----------------CCcceEEecC-----CeEEEEeccc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGY--PIESITWQKG--VQQLP----------------LNRRQKVFPN-----GTLLIENVQK  174 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~--~~~~~----------------~~~~~~~~~~-----~~l~i~~~~~  174 (258)
                      ..+...+|++++|.|.+.+.  ....+.|++.  ++.+.                ...+..+..+     ..|.|.++..
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            34566789999999987653  2346899983  22211                1112222221     1489999997


Q ss_pred             CCCCcEEEEEEEe
Q psy14532        175 DHDRGVYWCTATN  187 (258)
Q Consensus       175 ~~~~g~y~C~~~~  187 (258)
                       +|++.|.|....
T Consensus        89 -~Dsa~YyCA~~~  100 (120)
T d1ypzf1          89 -EDEAIYYCSYGE  100 (120)
T ss_dssp             -GGCSEEEEEECC
T ss_pred             -ccceeEEEEEcC
Confidence             999999997653

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=0.00015  Score=43.39  Aligned_cols=62  Identities=15%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             CCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc--ceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        127 GEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR--RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       127 g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~--~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .+.+.|.|.+.+ +| ...|.|.+++..+....  ......+++      |.|..-.. ..+..|+|+|.+..
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w-~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW-EAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            467899999988 45 45899999987654321  112233443      44443333 45668999999874

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.00022  Score=43.16  Aligned_cols=64  Identities=25%  Similarity=0.537  Sum_probs=43.4

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecC-----CeEEEEecccC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPN-----GTLLIENVQKD  175 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~-----~~l~i~~~~~~  175 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+.                ...++.+..+     ..|.|.+++. 
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~-   87 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT-   87 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG-
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc-
Confidence            34578899999999998754  346888873  32221                1223444332     1488889998 


Q ss_pred             CCCcEEEEEE
Q psy14532        176 HDRGVYWCTA  185 (258)
Q Consensus       176 ~~~g~y~C~~  185 (258)
                      +|.+.|.|..
T Consensus        88 eDtAvYYCAr   97 (117)
T d1c5db1          88 EDTAIYFCTR   97 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999954

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00014  Score=44.12  Aligned_cols=63  Identities=17%  Similarity=0.261  Sum_probs=40.1

Q ss_pred             cCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcceE----EecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRRQK----VFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~~~----~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.+ +|. ..|+|.++|..+.......    ...+++      |.|..-.+ .....|+|.|.+..
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W-~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            3567899999988 453 4899999987765332111    122333      44444333 44668999999864

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.42  E-value=8.8e-05  Score=46.55  Aligned_cols=65  Identities=11%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             eecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcce--------------EEecCCeEEEEecccCCCCc-EEEEEEE
Q psy14532        124 AIAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQ--------------KVFPNGTLLIENVQKDHDRG-VYWCTAT  186 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~--------------~~~~~~~l~i~~~~~~~~~g-~y~C~~~  186 (258)
                      ...+..++|.|.+.+. | ...|+|+++|..+......              +....+.|.|..-.+ .+.| .|+|.|.
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W-~~~g~~ytC~V~   95 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW-QNPRNHFRCQVQ   95 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH-TCTTCEEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh-CCCCCEEEEEEE
Confidence            3446789999999884 4 3489999998766432110              111122455554443 4545 7999999


Q ss_pred             eCC
Q psy14532        187 NKQ  189 (258)
Q Consensus       187 ~~~  189 (258)
                      +..
T Consensus        96 H~~   98 (127)
T d1ogae2          96 FYG   98 (127)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            864

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00034  Score=38.55  Aligned_cols=58  Identities=19%  Similarity=0.325  Sum_probs=39.0

Q ss_pred             ecCCcEEEEeeeCccc--CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532        125 IAGEPLYLGCPVAGYP--IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN  187 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~  187 (258)
                      ..|..+.|.|.....+  ...-.|.++++.+......  .....+.|.   .++++|.|.|.+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~--~~~tey~V~---~~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP--GQKTEFKVD---SDDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC--CSEEEEEEC---GGGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC--CCceEEEEe---cCCCCceEEEEEcC
Confidence            4577889999986533  3477999999988754321  111234443   24899999999764

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00025  Score=40.47  Aligned_cols=56  Identities=29%  Similarity=0.642  Sum_probs=39.5

Q ss_pred             ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEE
Q psy14532        123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      ....|.+|+|+|+..+.  ..|.|.+++..++..      .+..|.+.+.+.-+++|.|.|...
T Consensus        10 VSISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~------~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          10 VSISGTSVELTCPLDSD--ENLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEEETTEEEEECSSCCC--TTCEEEETTEEECSC------CCSEEEEESCCTTTSCEEEEEECS
T ss_pred             EEEeCCEEEEECCCCCC--CceEEeeccccCCCC------CCcEEEEccccccccCcceEEecC
Confidence            45679999999997643  469999988876532      122466666553379999999643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.40  E-value=0.00025  Score=42.30  Aligned_cols=63  Identities=24%  Similarity=0.437  Sum_probs=40.9

Q ss_pred             ceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecCC-----eEEEEecccCCC
Q psy14532        123 SAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPNG-----TLLIENVQKDHD  177 (258)
Q Consensus       123 ~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~~-----~l~i~~~~~~~~  177 (258)
                      .+++|+++.|.|.+.|..  .-.+.|+|.  ++.+.                ...+..+..+.     .|.|.+++. +|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~-eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEP-ED   82 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCG-GG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCc-cc
Confidence            467899999999998743  346788874  22211                11234443322     488899998 99


Q ss_pred             CcEEEEEEE
Q psy14532        178 RGVYWCTAT  186 (258)
Q Consensus       178 ~g~y~C~~~  186 (258)
                      .+.|.|...
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=0.00021  Score=42.82  Aligned_cols=62  Identities=15%  Similarity=0.305  Sum_probs=39.9

Q ss_pred             CCcEEEEeeeCcc-c-CceEEEEeCCcccCCCc--ceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        127 GEPLYLGCPVAGY-P-IESITWQKGVQQLPLNR--RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       127 g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~--~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .+.+.|.|.+.+. | ...|+|.+++.......  ......+++      |.|..... ..+..|+|.|.+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w-~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETW-QQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHh-CCCCEEEEEEEeCC
Confidence            4678999999884 4 35899999987654221  112233443      44444433 45568999999864

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00051  Score=39.38  Aligned_cols=44  Identities=25%  Similarity=0.508  Sum_probs=35.6

Q ss_pred             ceeeeeCCcEEEeecccCCCceEEEEEEEeCCccee-eceEEEEEe
Q psy14532         67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISVT  111 (258)
Q Consensus        67 ~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~  111 (258)
                      ...+..+|+|.|..+ ...|+|+|...+.+..|... ...+.|.|.
T Consensus        56 ~y~i~~nGtLkIK~L-~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          56 TYKLFKNGTLKIKHL-KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TEEECTTSCEEECSC-CGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             eEEEccCCcEEeeee-eecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            345678999999999 99999999999999888653 366666664

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00031  Score=42.58  Aligned_cols=66  Identities=21%  Similarity=0.456  Sum_probs=43.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC---C--eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN---G--TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~---~--~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+   .  .|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            345678899999999998754  336888873  22210                 1123333222   1  48888999


Q ss_pred             cCCCCcEEEEEEE
Q psy14532        174 KDHDRGVYWCTAT  186 (258)
Q Consensus       174 ~~~~~g~y~C~~~  186 (258)
                      . +|.+.|.|...
T Consensus        87 ~-eDtAvYYCAr~   98 (117)
T d1um5h1          87 S-EDSAVYYCARS   98 (117)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             C-CcceEEEEeec
Confidence            8 99999999654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.37  E-value=0.00019  Score=43.41  Aligned_cols=66  Identities=21%  Similarity=0.489  Sum_probs=43.4

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+.     .|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            345678899999999998754  346888873  2211      1           11233333221     37888998


Q ss_pred             cCCCCcEEEEEEE
Q psy14532        174 KDHDRGVYWCTAT  186 (258)
Q Consensus       174 ~~~~~g~y~C~~~  186 (258)
                      . +|.+.|.|.-.
T Consensus        88 ~-eDTAvYYCAr~   99 (117)
T d1jpth1          88 A-EDTAVYYCARD   99 (117)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             C-CCceEEEEeec
Confidence            7 99999999643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00066  Score=39.70  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             ceeeeecCCCceEEEEEEeecCCCeEE-EeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532          9 FIQQTLQPGPPVSLKCIATGNPTPHIS-WKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR   87 (258)
Q Consensus         9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~   87 (258)
                      +.-+.+.+|+++.+.|.++. |..+++ |...+..+....  .....                ....=+.|.++ ...+.
T Consensus        12 p~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g--~~v~~----------------Dpk~Gf~I~~~-~~~~~   71 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDG--KRIIW----------------DSRKGFIISNA-TYKEI   71 (95)
T ss_dssp             CEEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCS--SSEEE----------------ETTTEEEESSC-CGGGC
T ss_pred             CCEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCC--CEEEE----------------CCCCCEEEeCC-CcccC
Confidence            45577899999999999884 555554 444554433220  11111                11223788999 89999


Q ss_pred             eEEEEEEEeCC
Q psy14532         88 GVYWCTATNKQ   98 (258)
Q Consensus        88 G~Y~C~~~~~~   98 (258)
                      |.|.|.+....
T Consensus        72 g~y~C~a~~~g   82 (95)
T d1fltx_          72 GLLTCEATVNG   82 (95)
T ss_dssp             EEEEEEEEETT
T ss_pred             eEEEEEEEECC
Confidence            99999998664

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.36  E-value=0.00045  Score=42.87  Aligned_cols=67  Identities=24%  Similarity=0.406  Sum_probs=44.0

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEec--C---CeEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFP--N---GTLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~--~---~~l~i~~~~~  174 (258)
                      .+...+|++++|.|.+.|..  ...+.|+|.  ++.+.                 ...++.+..  .   ..|.|.++..
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            45567899999999987643  446899983  22111                 012233321  1   2488999997


Q ss_pred             CCCCcEEEEEEEeC
Q psy14532        175 DHDRGVYWCTATNK  188 (258)
Q Consensus       175 ~~~~g~y~C~~~~~  188 (258)
                       +|++.|.|.....
T Consensus        90 -~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          90 -QDIATYYCALWEA  102 (123)
T ss_dssp             -GGCEEEEEEEEEE
T ss_pred             -ccCcEEEEeeeCC
Confidence             9999999987543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.36  E-value=0.00024  Score=43.42  Aligned_cols=66  Identities=17%  Similarity=0.263  Sum_probs=42.9

Q ss_pred             CCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC---------------CCcceEEe----cCCeEEEEecccCCCC
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP---------------LNRRQKVF----PNGTLLIENVQKDHDR  178 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~---------------~~~~~~~~----~~~~l~i~~~~~~~~~  178 (258)
                      ....+.+|++++|.|.... ....+.||+.  ++.+.               ...+....    .+..|.|.++.. +|+
T Consensus         7 ~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds   84 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP-SQT   84 (112)
T ss_dssp             SEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG-GGC
T ss_pred             CeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH-HHC
Confidence            4456889999999998753 3457999983  22111               00111111    112599999998 999


Q ss_pred             cEEEEEEEe
Q psy14532        179 GVYWCTATN  187 (258)
Q Consensus       179 g~y~C~~~~  187 (258)
                      |.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999997754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.36  E-value=0.00071  Score=41.68  Aligned_cols=33  Identities=15%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             ecCCCceEEEEEEeec-C---CCeEEEeeCCEeCcCC
Q psy14532         14 LQPGPPVSLKCIATGN-P---TPHISWKLDGYPLAGD   46 (258)
Q Consensus        14 ~~~g~~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~   46 (258)
                      ...+..++|.|.+.++ |   ...+.|++++..+...
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~   65 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTA   65 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSST
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCC
Confidence            4568899999999885 3   3478899999877554

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.0008  Score=41.03  Aligned_cols=64  Identities=22%  Similarity=0.470  Sum_probs=42.0

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEec---CC--eEEEEecccC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFP---NG--TLLIENVQKD  175 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~---~~--~l~i~~~~~~  175 (258)
                      ..+.+|++++|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..   ..  .|.|.++.. 
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~-   88 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS-   88 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG-
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc-
Confidence            4577899999999987643  335888873  22211                 112333322   11  488999998 


Q ss_pred             CCCcEEEEEEE
Q psy14532        176 HDRGVYWCTAT  186 (258)
Q Consensus       176 ~~~g~y~C~~~  186 (258)
                      +|.+.|.|...
T Consensus        89 eDsAvYYCA~~   99 (119)
T d1qnzh_          89 DDSAVYYCAIH   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cceeEEEEEEe
Confidence            99999999643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.00072  Score=40.07  Aligned_cols=62  Identities=19%  Similarity=0.447  Sum_probs=37.4

Q ss_pred             cCCcEEEEeeeCccc--CceEEEEeC--Cccc-----------------CCCcceEEecCC-----eEEEEecccCCCCc
Q psy14532        126 AGEPLYLGCPVAGYP--IESITWQKG--VQQL-----------------PLNRRQKVFPNG-----TLLIENVQKDHDRG  179 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~-----------------~~~~~~~~~~~~-----~l~i~~~~~~~~~g  179 (258)
                      +|++++|.|.+.|..  .-.+.|+|.  ++.+                 ....+..+..+.     .|.|.+++. +|.+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~-eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS-EDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----CCS
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccc-cccE
Confidence            488999999998754  336888873  2221                 112334443322     488899997 9999


Q ss_pred             EEEEEEEeC
Q psy14532        180 VYWCTATNK  188 (258)
Q Consensus       180 ~y~C~~~~~  188 (258)
                      .|.|.....
T Consensus        80 vYYCAr~~~   88 (103)
T d1oari_          80 VYYCARMWY   88 (103)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEeEEECC
Confidence            999976443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00011  Score=44.08  Aligned_cols=63  Identities=16%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             cCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.++ | ...|.|.++|..+.....   .....+++      |.|..... .....|+|+|.+..
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w-~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHH-HHSSCEEEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            46779999999884 4 348999999987654321   12233443      33333222 34557999999863

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00088  Score=39.96  Aligned_cols=75  Identities=12%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             ecCCCceEEEEEEeec-CC--CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532         14 LQPGPPVSLKCIATGN-PT--PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY   90 (258)
Q Consensus        14 ~~~g~~v~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y   90 (258)
                      ...++.++|.|.+.++ |.  ..+.|.+++..+........  ...        .  ........|.|... .......|
T Consensus        16 ~~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~--~~~--------~--gtys~~S~L~v~~~-~W~~~~~y   82 (102)
T d2fbjh2          16 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPA--LAS--------G--GRYTMSNQLTLPAV-ECPEGESV   82 (102)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCE--ECS--------S--SCEEEEEEEEECGG-GSCTTCEE
T ss_pred             ccCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeE--ecC--------C--CCEEEEEEEEEeHH-HccCCCEE
Confidence            3467889999999995 43  36789888754432110000  000        0  01111223555554 44445689


Q ss_pred             EEEEEeCCcce
Q psy14532         91 WCTATNKQGRS  101 (258)
Q Consensus        91 ~C~~~~~~~~~  101 (258)
                      +|.+.+.....
T Consensus        83 tC~V~H~s~~~   93 (102)
T d2fbjh2          83 KCSVQHDSNPV   93 (102)
T ss_dssp             EEEEEETTSCC
T ss_pred             EEEEEECCCCC
Confidence            99999865433

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.33  E-value=0.00029  Score=42.96  Aligned_cols=63  Identities=25%  Similarity=0.380  Sum_probs=42.5

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecCC-----eEEEEecccCC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPNG-----TLLIENVQKDH  176 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~~-----~l~i~~~~~~~  176 (258)
                      ..+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                ...++.+..+.     .|.|.+++. +
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~-e   88 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA-A   88 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG-G
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc-c
Confidence            4578899999999998754  336789874  22211                12234443321     388889988 9


Q ss_pred             CCcEEEEEE
Q psy14532        177 DRGVYWCTA  185 (258)
Q Consensus       177 ~~g~y~C~~  185 (258)
                      |.+.|.|..
T Consensus        89 DtA~YYCAr   97 (120)
T d1dn0b1          89 DTAVYYCAR   97 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cccEEEEEe
Confidence            999999943

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.32  E-value=0.00056  Score=41.47  Aligned_cols=67  Identities=19%  Similarity=0.411  Sum_probs=44.3

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+.     .|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            34578899999999998754  336788863  2211      1           12234444332     388889987


Q ss_pred             CCCCcEEEEEEEeC
Q psy14532        175 DHDRGVYWCTATNK  188 (258)
Q Consensus       175 ~~~~g~y~C~~~~~  188 (258)
                       +|.+.|.|.....
T Consensus        89 -eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 -EDTALYYCARLHY  101 (118)
T ss_dssp             -GGCEEEEEEEEET
T ss_pred             -CcceEEEeeEecC
Confidence             9999999976543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.32  E-value=0.00035  Score=42.32  Aligned_cols=66  Identities=17%  Similarity=0.451  Sum_probs=43.5

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC---C--eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN---G--TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~---~--~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+   .  .|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            34577899999999988753  336788873  2221      0           1223333322   1  488899987


Q ss_pred             CCCCcEEEEEEEe
Q psy14532        175 DHDRGVYWCTATN  187 (258)
Q Consensus       175 ~~~~g~y~C~~~~  187 (258)
                       +|.+.|.|....
T Consensus        89 -eDtAvYYCA~~~  100 (117)
T d1iqdb1          89 -DDTAVYYCAVPD  100 (117)
T ss_dssp             -GGCEEEEEEECS
T ss_pred             -CcceEEEEeEcC
Confidence             999999997653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00028  Score=42.78  Aligned_cols=65  Identities=17%  Similarity=0.463  Sum_probs=42.5

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+.     .|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            345678899999999998754  336788873  2221      1           11233333221     48888998


Q ss_pred             cCCCCcEEEEEE
Q psy14532        174 KDHDRGVYWCTA  185 (258)
Q Consensus       174 ~~~~~g~y~C~~  185 (258)
                      . +|.+.|.|.-
T Consensus        88 ~-eDTAvYYCAr   98 (118)
T d2jelh1          88 S-EDSAIYYCAR   98 (118)
T ss_dssp             G-GGCEEEEEEE
T ss_pred             c-CcceeeeEEE
Confidence            7 9999999953

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.0002  Score=42.81  Aligned_cols=62  Identities=19%  Similarity=0.419  Sum_probs=38.0

Q ss_pred             cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcceEEecCC------eEEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.++|.|.+.+ +| ...|.|.+++.............++      .|.|..-.  -+.+.|+|.|.+..
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~--w~~~~ytC~V~H~~   88 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGT--WPSASVTCLVAHPK   88 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTT--TTTSCCEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhh--cCCCeEEEEEEeCC
Confidence            4678999999988 45 3589997776543221111122333      34444332  24678999999864

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.30  E-value=0.00028  Score=42.77  Aligned_cols=63  Identities=22%  Similarity=0.423  Sum_probs=41.5

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+.     .|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            34578899999999998743  346788773  2211      1           11233333221     388889987


Q ss_pred             CCCCcEEEEE
Q psy14532        175 DHDRGVYWCT  184 (258)
Q Consensus       175 ~~~~g~y~C~  184 (258)
                       +|.+.|.|.
T Consensus        89 -eDtAvYYCA   97 (118)
T d1nlbh1          89 -EDTATYFCA   97 (118)
T ss_dssp             -GGCEEEEEE
T ss_pred             -CcceEEEEe
Confidence             999999995

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.29  E-value=0.00035  Score=42.28  Aligned_cols=66  Identities=26%  Similarity=0.371  Sum_probs=43.8

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecC-----CeEEEEecccC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPN-----GTLLIENVQKD  175 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~-----~~l~i~~~~~~  175 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                ...+..+..+     ..|.|.+++. 
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~-   87 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA-   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc-
Confidence            34577899999999998754  346888873  22210                1123333321     1488889987 


Q ss_pred             CCCcEEEEEEEe
Q psy14532        176 HDRGVYWCTATN  187 (258)
Q Consensus       176 ~~~g~y~C~~~~  187 (258)
                      +|.+.|.|....
T Consensus        88 eDtAvYyCAr~~   99 (116)
T d7fabh1          88 ADTAVYYCARNL   99 (116)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEeeeec
Confidence            999999997543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.00024  Score=42.55  Aligned_cols=62  Identities=21%  Similarity=0.449  Sum_probs=34.9

Q ss_pred             cCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        126 AGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       126 ~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      .++.+.|.|.+.|. | ...|.|.+++.............+++      |.|..-.  -+.+.|+|+|.+..
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~--w~~~~ytC~V~H~~   88 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSST--WPSQSITCNVAHPA   88 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTT--TTTSCCEEEEEEGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhH--cCCceEEEEEEECC
Confidence            46789999999884 4 34899976654322111112223343      4433332  23568999999864

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.29  E-value=0.00057  Score=41.64  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC-------C---------CcceEE--ecCCeEEEEecccCCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP-------L---------NRRQKV--FPNGTLLIENVQKDHDR  178 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~-------~---------~~~~~~--~~~~~l~i~~~~~~~~~  178 (258)
                      +....+.+|+.++|.|...+.....+.||+.  ++.+.       .         ..+...  ..+..|.|..+.. +|+
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~-~ds   86 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM-SQG   86 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC-CSC
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc-cCC
Confidence            3455678899999999876555567999984  22211       0         011111  1234578888876 999


Q ss_pred             cEEEEEEEeC
Q psy14532        179 GVYWCTATNK  188 (258)
Q Consensus       179 g~y~C~~~~~  188 (258)
                      +.|.|.+...
T Consensus        87 a~Y~Ca~~~~   96 (112)
T d1fo0b_          87 RTLYCTCSAD   96 (112)
T ss_dssp             EEEEEEEESS
T ss_pred             ccEEEEEecC
Confidence            9999987543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00033  Score=42.41  Aligned_cols=65  Identities=22%  Similarity=0.426  Sum_probs=43.1

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecCC-----eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPNG-----TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~-----~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+.     .|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            34567899999999998754  336788873  22110                 11234443321     488889987


Q ss_pred             CCCCcEEEEEEE
Q psy14532        175 DHDRGVYWCTAT  186 (258)
Q Consensus       175 ~~~~g~y~C~~~  186 (258)
                       +|.+.|.|...
T Consensus        89 -eDTAvYYCAr~   99 (117)
T d1jnhb1          89 -EDSAVYSCSRG   99 (117)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -CcceEEEEeec
Confidence             99999999653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.28  E-value=0.00027  Score=43.22  Aligned_cols=67  Identities=24%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             CCCcceecCCcEEEEeeeCcc------cCceEEEEeC--CcccC------------CCcceEEe---cCCeEEEEecccC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGY------PIESITWQKG--VQQLP------------LNRRQKVF---PNGTLLIENVQKD  175 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~------~~~~i~W~~~--~~~~~------------~~~~~~~~---~~~~l~i~~~~~~  175 (258)
                      +..+.+.+|++++|.|...+.      ....+.|++.  +....            ...+....   ....|.|.++.. 
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~-   86 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA-   86 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc-
Confidence            455678899999999986532      1235899984  22111            11111111   112599999997 


Q ss_pred             CCCcEEEEEEE
Q psy14532        176 HDRGVYWCTAT  186 (258)
Q Consensus       176 ~~~g~y~C~~~  186 (258)
                      +|+|.|.|.+.
T Consensus        87 ~Dsa~YyCA~~   97 (113)
T d1q9ra1          87 EDLAVYYCKQS   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCCeEEEeccc
Confidence            99999999764

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.28  E-value=0.00036  Score=42.16  Aligned_cols=65  Identities=18%  Similarity=0.430  Sum_probs=43.4

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecCC-----eEEEEecccC
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPNG-----TLLIENVQKD  175 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~~-----~l~i~~~~~~  175 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                ...+..+..+.     .|.|.+++. 
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~-   87 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT-   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG-
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee-
Confidence            34578899999999998754  346788873  22211                12234443321     488889987 


Q ss_pred             CCCcEEEEEEE
Q psy14532        176 HDRGVYWCTAT  186 (258)
Q Consensus       176 ~~~g~y~C~~~  186 (258)
                      +|.+.|.|.-.
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00029  Score=42.47  Aligned_cols=65  Identities=23%  Similarity=0.478  Sum_probs=42.7

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecCC-----eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPNG-----TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~-----~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+.     .|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            345678899999999998754  346788773  22110                 11233443221     47888998


Q ss_pred             cCCCCcEEEEEE
Q psy14532        174 KDHDRGVYWCTA  185 (258)
Q Consensus       174 ~~~~~g~y~C~~  185 (258)
                      . +|.+.|.|.-
T Consensus        88 ~-eDtAvYYCAr   98 (116)
T d1mjuh1          88 S-DDSAVYYCAN   98 (116)
T ss_dssp             G-GGCEEEEEEE
T ss_pred             C-CCceEEEEcc
Confidence            7 9999999964

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.27  E-value=0.00059  Score=41.52  Aligned_cols=64  Identities=22%  Similarity=0.452  Sum_probs=42.7

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecCC-----eEEEEecccC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPNG-----TLLIENVQKD  175 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~-----~l~i~~~~~~  175 (258)
                      ..+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+.     .|.|.+++. 
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~-   88 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP-   88 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc-
Confidence            4578899999999987753  346788873  22111                 11244444321     388889987 


Q ss_pred             CCCcEEEEEEE
Q psy14532        176 HDRGVYWCTAT  186 (258)
Q Consensus       176 ~~~g~y~C~~~  186 (258)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999753

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.27  E-value=0.00046  Score=42.15  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC---------------CCcceEEe----cCCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP---------------LNRRQKVF----PNGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~---------------~~~~~~~~----~~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++++|.|.... ....+.||+..  +.+.               ...+....    ....|.|.++.. +|
T Consensus         8 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   85 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL-ED   85 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCG-GG
T ss_pred             CCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCc-CC
Confidence            45567889999999998643 23579999842  1110               00111111    122588899997 99


Q ss_pred             CcEEEEEEEe
Q psy14532        178 RGVYWCTATN  187 (258)
Q Consensus       178 ~g~y~C~~~~  187 (258)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (113)
T d1nfdb1          86 SAMYFCASSL   95 (113)
T ss_dssp             CEEECEEEES
T ss_pred             ceeEEEEeec
Confidence            9999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.27  E-value=0.00016  Score=43.55  Aligned_cols=66  Identities=18%  Similarity=0.335  Sum_probs=42.3

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--ccC------------CCcceEEe---cCCeEEEEecccCCCCcEE
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QLP------------LNRRQKVF---PNGTLLIENVQKDHDRGVY  181 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~~------------~~~~~~~~---~~~~l~i~~~~~~~~~g~y  181 (258)
                      +..+.+.+|++++|.|.... ....+.||+...  ...            ........   ....|.|.++.. +|+|.|
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Y   84 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMET-EDAATY   84 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCc-ccCCeE
Confidence            44567889999999998654 234579998421  110            01111111   112599999997 999999


Q ss_pred             EEEEE
Q psy14532        182 WCTAT  186 (258)
Q Consensus       182 ~C~~~  186 (258)
                      .|...
T Consensus        85 yCa~~   89 (104)
T d1yqvl1          85 YCQQW   89 (104)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.27  E-value=0.00031  Score=42.86  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=44.1

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeCC--cccC---------------CCcceEEe----cCCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGV--QQLP---------------LNRRQKVF----PNGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~--~~~~---------------~~~~~~~~----~~~~l~i~~~~~~~~  177 (258)
                      +....+.+|++++|.|.... ....+.||+..  ..+.               ........    ....|.|.++.. +|
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D   82 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP-SH   82 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT-TT
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc-cc
Confidence            34467889999999998653 23579999842  2110               00011111    123588889987 99


Q ss_pred             CcEEEEEEEeCC
Q psy14532        178 RGVYWCTATNKQ  189 (258)
Q Consensus       178 ~g~y~C~~~~~~  189 (258)
                      +|.|.|.+....
T Consensus        83 sa~YyCA~~~~~   94 (112)
T d2cdeb1          83 TSQYLCASSENI   94 (112)
T ss_dssp             CSEEEEEEECSS
T ss_pred             cccEEEEEecCC
Confidence            999999876543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.00021  Score=42.90  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=24.6

Q ss_pred             ecCCCceEEEEEEeec-CC---CeEEEeeCCEeCcCC
Q psy14532         14 LQPGPPVSLKCIATGN-PT---PHISWKLDGYPLAGD   46 (258)
Q Consensus        14 ~~~g~~v~l~C~~~~~-~~---~~v~W~~~~~~~~~~   46 (258)
                      ...+.+++|.|.+.++ |.   ..+.|+++|..+...
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~   49 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA   49 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCC
Confidence            3467889999999874 33   488999988765543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.26  E-value=0.00063  Score=42.03  Aligned_cols=65  Identities=18%  Similarity=0.447  Sum_probs=43.4

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecCC-----eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPNG-----TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~-----~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+.                 ...+..+..+.     .|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            34578899999999998754  335788873  22211                 11234443321     488999987


Q ss_pred             CCCCcEEEEEEE
Q psy14532        175 DHDRGVYWCTAT  186 (258)
Q Consensus       175 ~~~~g~y~C~~~  186 (258)
                       +|.+.|.|...
T Consensus        89 -eDTAvYYCAr~   99 (135)
T d1ieha_          89 -EDTAVYYCAKY   99 (135)
T ss_dssp             -SSCEEEEEEEB
T ss_pred             -ccceeeEEEEe
Confidence             99999999654

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.00021  Score=42.87  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=38.9

Q ss_pred             ecCCcEEEEeeeCcc-cC---ceEEEEeCCcccCCCc--ceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        125 IAGEPLYLGCPVAGY-PI---ESITWQKGVQQLPLNR--RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       125 ~~g~~~~l~C~~~~~-~~---~~i~W~~~~~~~~~~~--~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      ..+.+++|.|.+.+. |.   ..++|.+++..+....  ......+++      |.|..-.+ ..+..|+|+|.+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W-~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW-LNGKTFKCKVNSGA   89 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHH-HTTCCEEEEEECSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHh-cCCCEEEEEEEeCC
Confidence            346678999999873 43   4889999887654321  111223343      33333222 34457999999864

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.25  E-value=0.00031  Score=42.29  Aligned_cols=64  Identities=22%  Similarity=0.538  Sum_probs=42.3

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC---C--eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN---G--TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~---~--~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+   .  .|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            34578899999999988753  346788873  2211      1           1123344322   1  388889987


Q ss_pred             CCCCcEEEEEE
Q psy14532        175 DHDRGVYWCTA  185 (258)
Q Consensus       175 ~~~~g~y~C~~  185 (258)
                       +|.+.|.|..
T Consensus        89 -eDtAvYYCA~   98 (114)
T d1indh1          89 -EDTALYFCAS   98 (114)
T ss_dssp             -GGCEEEEEEC
T ss_pred             -CcccEEEECC
Confidence             9999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.25  E-value=0.00039  Score=42.45  Aligned_cols=65  Identities=17%  Similarity=0.425  Sum_probs=42.7

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC---C--eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN---G--TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~---~--~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+.                 ...+..+..+   .  .|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            44578899999999987643  346888873  22211                 1123333221   1  388889987


Q ss_pred             CCCCcEEEEEEE
Q psy14532        175 DHDRGVYWCTAT  186 (258)
Q Consensus       175 ~~~~g~y~C~~~  186 (258)
                       +|.+.|.|...
T Consensus        89 -eDtA~YYCAr~   99 (120)
T d1pg7x1          89 -NDSAVYYCARE   99 (120)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -CcceEEEeeec
Confidence             99999999754

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00054  Score=41.19  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=25.8

Q ss_pred             eecCCCceEEEEEEeec-CC---CeEEEeeCCEeCcCC
Q psy14532         13 TLQPGPPVSLKCIATGN-PT---PHISWKLDGYPLAGD   46 (258)
Q Consensus        13 ~~~~g~~v~l~C~~~~~-~~---~~v~W~~~~~~~~~~   46 (258)
                      .+..++.++|.|.+.++ |.   ..+.|.+++..+...
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~   51 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA   51 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCC
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCc
Confidence            35678999999999885 32   467899998876544

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.24  E-value=0.00033  Score=43.00  Aligned_cols=65  Identities=29%  Similarity=0.490  Sum_probs=43.2

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC-----CeEEEEecccC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN-----GTLLIENVQKD  175 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~-----~~l~i~~~~~~  175 (258)
                      ..+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+     ..|.|.+++. 
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~-   87 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS-   87 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC-
Confidence            4577899999999998754  347889873  22211                 1123333322     1378888887 


Q ss_pred             CCCcEEEEEEEe
Q psy14532        176 HDRGVYWCTATN  187 (258)
Q Consensus       176 ~~~g~y~C~~~~  187 (258)
                      +|.+.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (124)
T d1zvya1          88 EDTAIYTCGATR   99 (124)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeecc
Confidence            999999997643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.24  E-value=0.00034  Score=41.76  Aligned_cols=66  Identities=21%  Similarity=0.529  Sum_probs=43.2

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-------------------CCcceEEecC---C--eEEEEe
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-------------------LNRRQKVFPN---G--TLLIEN  171 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-------------------~~~~~~~~~~---~--~l~i~~  171 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                   ...++.+..+   .  .|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            345678899999999988743  336788773  22110                   1123444332   2  488889


Q ss_pred             cccCCCCcEEEEEEE
Q psy14532        172 VQKDHDRGVYWCTAT  186 (258)
Q Consensus       172 ~~~~~~~g~y~C~~~  186 (258)
                      ++. +|.+.|.|.-.
T Consensus        88 L~~-eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKT-EDTGIYYCVRG  101 (109)
T ss_dssp             CCG-GGCEEEEEEEE
T ss_pred             CCH-hHCEEEEEEEc
Confidence            987 99999999743

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.23  E-value=0.00051  Score=42.38  Aligned_cols=68  Identities=18%  Similarity=0.410  Sum_probs=44.5

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC---C--eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN---G--TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~---~--~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+   .  .|.|.+++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLR   86 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccC
Confidence            345578899999999998754  336788873  22211                 1123333322   1  37888998


Q ss_pred             cCCCCcEEEEEEEeC
Q psy14532        174 KDHDRGVYWCTATNK  188 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~  188 (258)
                      . +|.+.|.|.....
T Consensus        87 ~-eDtAvYyCAr~~~  100 (130)
T d1rhhb1          87 S-DDTAVYYCARDFG  100 (130)
T ss_dssp             G-GGCEEEEEEEECC
T ss_pred             C-CCcEEEEEEeecC
Confidence            7 9999999976543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.23  E-value=0.00033  Score=42.82  Aligned_cols=68  Identities=18%  Similarity=0.344  Sum_probs=43.5

Q ss_pred             CCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccC---------------CCcceEEe----cCCeEEEEecccCCC
Q psy14532        119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLP---------------LNRRQKVF----PNGTLLIENVQKDHD  177 (258)
Q Consensus       119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~---------------~~~~~~~~----~~~~l~i~~~~~~~~  177 (258)
                      +..+.+.+|++++|.|.... ....+.|||.  +..+.               ........    ....|.|.++.. +|
T Consensus         7 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D   84 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST-NQ   84 (113)
T ss_dssp             CSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG-GG
T ss_pred             CCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc-CC
Confidence            34466789999999998643 3457899983  22110               00111111    113588999987 99


Q ss_pred             CcEEEEEEEeC
Q psy14532        178 RGVYWCTATNK  188 (258)
Q Consensus       178 ~g~y~C~~~~~  188 (258)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (113)
T d1j8he1          85 TSMYLCASSST   95 (113)
T ss_dssp             CEEEEEEEECT
T ss_pred             cccEEeeEccC
Confidence            99999988653

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0019  Score=35.96  Aligned_cols=54  Identities=24%  Similarity=0.374  Sum_probs=37.7

Q ss_pred             cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA   94 (258)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~   94 (258)
                      ++..+|.|.|..   ....+.|++++..+.....                       ...+|-+-+. ..+-.|.|.|..
T Consensus        20 ~~dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~-----------------------~~ktlnLG~~-~~DPRGiY~C~g   72 (86)
T d1jbja1          20 RGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-----------------------TKNTWNLGNN-AKDPRGTYQCQG   72 (86)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEETTEECCCSSC-----------------------CSSCCEEEET-TSCCEEEEEEEE
T ss_pred             ccCCeEEEEeCC---CCcEEEEecCCceeccccc-----------------------ccceeecCCc-ccCCCcceEcCC
Confidence            467789999943   3458999999987654310                       1235667676 777789999964


Q ss_pred             E
Q psy14532         95 T   95 (258)
Q Consensus        95 ~   95 (258)
                      .
T Consensus        73 ~   73 (86)
T d1jbja1          73 A   73 (86)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.22  E-value=0.00049  Score=41.73  Aligned_cols=66  Identities=21%  Similarity=0.510  Sum_probs=42.3

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  |+.+.                 ...+.++..+     ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            345678899999999998744  336778763  22210                 1123333221     147888998


Q ss_pred             cCCCCcEEEEEEE
Q psy14532        174 KDHDRGVYWCTAT  186 (258)
Q Consensus       174 ~~~~~g~y~C~~~  186 (258)
                      . +|.+.|.|.-.
T Consensus        88 ~-eDtAvYYCAr~   99 (118)
T d1ct8b1          88 T-EDSAIYYCARY   99 (118)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             C-CcceEEEEeee
Confidence            7 99999999654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.20  E-value=0.00077  Score=41.07  Aligned_cols=66  Identities=20%  Similarity=0.471  Sum_probs=43.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC---C--eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN---G--TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~---~--~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+   .  .|.|.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            445688999999999998754  336888873  2221      0           1123333322   1  38888998


Q ss_pred             cCCCCcEEEEEEE
Q psy14532        174 KDHDRGVYWCTAT  186 (258)
Q Consensus       174 ~~~~~g~y~C~~~  186 (258)
                      . +|.+.|.|...
T Consensus        89 ~-eDtA~YYCAr~  100 (122)
T d1vgeh1          89 P-EDTAVYYCARD  100 (122)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             C-CcceEEEEeec
Confidence            7 99999999665

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00038  Score=42.15  Aligned_cols=64  Identities=19%  Similarity=0.421  Sum_probs=41.5

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEec---CC--eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFP---NG--TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~---~~--~l~i~~~~~  174 (258)
                      ...+.+|++++|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..   ..  .|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            34578899999999987643  346788873  2211      0           112333322   11  488899987


Q ss_pred             CCCCcEEEEEE
Q psy14532        175 DHDRGVYWCTA  185 (258)
Q Consensus       175 ~~~~g~y~C~~  185 (258)
                       +|.+.|.|..
T Consensus        89 -eDtAvYYCAr   98 (115)
T d1f3dh1          89 -EDSAVYYCAN   98 (115)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CCcEEEEEec
Confidence             9999999954

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00041  Score=42.16  Aligned_cols=65  Identities=22%  Similarity=0.507  Sum_probs=42.6

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+     ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            344577899999999998754  336888873  2221      1           1123333321     148888998


Q ss_pred             cCCCCcEEEEEE
Q psy14532        174 KDHDRGVYWCTA  185 (258)
Q Consensus       174 ~~~~~g~y~C~~  185 (258)
                      . +|.+.|.|..
T Consensus        88 ~-eDTAvYYCAr   98 (119)
T d1eapb1          88 S-EDSAVYFCKR   98 (119)
T ss_dssp             G-GGCEEEEEEE
T ss_pred             C-CcceEEEEEE
Confidence            7 9999999954

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.19  E-value=0.0005  Score=41.66  Aligned_cols=65  Identities=26%  Similarity=0.513  Sum_probs=42.2

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+     ..|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~   87 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence            445678899999999988743  346778773  22110                 1113333222     148888998


Q ss_pred             cCCCCcEEEEEE
Q psy14532        174 KDHDRGVYWCTA  185 (258)
Q Consensus       174 ~~~~~g~y~C~~  185 (258)
                      . +|.+.|.|.-
T Consensus        88 ~-eDtAvYYCAr   98 (117)
T d1mfah1          88 S-EDSAVYYCTR   98 (117)
T ss_dssp             G-GGCEEEEEEE
T ss_pred             C-CcceEEEEec
Confidence            7 9999999964

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.18  E-value=0.00033  Score=42.59  Aligned_cols=66  Identities=24%  Similarity=0.468  Sum_probs=43.3

Q ss_pred             CcceecCCcEEEEeeeCcccCc---eEEEEeC--CcccC----------------CCcceEEecCC-----eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYPIE---SITWQKG--VQQLP----------------LNRRQKVFPNG-----TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~~~---~i~W~~~--~~~~~----------------~~~~~~~~~~~-----~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..-.   .+.|+|.  ++.+.                ...+..+..+.     .|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3567889999999999886532   4678773  32211                11233443321     388889987


Q ss_pred             CCCCcEEEEEEEe
Q psy14532        175 DHDRGVYWCTATN  187 (258)
Q Consensus       175 ~~~~g~y~C~~~~  187 (258)
                       +|.+.|.|....
T Consensus        89 -eDTAvYYCAr~~  100 (119)
T d1ncwh1          89 -EDTATYYCAGLL  100 (119)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -CCceEEEEeEec
Confidence             999999996443

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.18  E-value=0.00065  Score=41.27  Aligned_cols=65  Identities=20%  Similarity=0.445  Sum_probs=42.9

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC---C--eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN---G--TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~---~--~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...++.+..+   .  .|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            34577899999999998754  336888873  2211      0           1123344321   1  488889987


Q ss_pred             CCCCcEEEEEEE
Q psy14532        175 DHDRGVYWCTAT  186 (258)
Q Consensus       175 ~~~~g~y~C~~~  186 (258)
                       +|.+.|.|...
T Consensus        89 -eDTAvYYCAr~   99 (119)
T d1rz7h1          89 -EDTAVYYCAAD   99 (119)
T ss_dssp             -GGCEEEEEEEC
T ss_pred             -ccceEEEEeec
Confidence             99999999653

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.17  E-value=0.00041  Score=39.93  Aligned_cols=29  Identities=14%  Similarity=0.109  Sum_probs=22.1

Q ss_pred             CceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532         18 PPVSLKCIATGN-P-TPHISWKLDGYPLAGD   46 (258)
Q Consensus        18 ~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~   46 (258)
                      +.++|.|.+.++ | ...|.|.++|..+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~   44 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFD   44 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECC
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCc
Confidence            567999999986 3 3489999998866443

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.0013  Score=36.64  Aligned_cols=53  Identities=23%  Similarity=0.429  Sum_probs=37.9

Q ss_pred             cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEE
Q psy14532        126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT  186 (258)
Q Consensus       126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~  186 (258)
                      ...+|.|.|....   ..|+|++++..+.....    ...+|.+.+... +..|.|.|...
T Consensus        21 ~dGsV~L~Cn~~~---k~i~W~kdg~~i~~~~~----~~ktlnLG~~~~-DPRGiY~C~g~   73 (86)
T d1jbja1          21 GDGSVLLTCGLTD---KTIKWLKDGSIISPLNA----TKNTWNLGNNAK-DPRGTYQCQGA   73 (86)
T ss_dssp             SSCEEEEECSSSC---SCEEEEETTEECCCSSC----CSSCCEEEETTS-CCEEEEEEEES
T ss_pred             cCCeEEEEeCCCC---cEEEEecCCceeccccc----ccceeecCCccc-CCCcceEcCCC
Confidence            3468999996543   58999999987653321    234577777765 88899999754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.0005  Score=42.02  Aligned_cols=67  Identities=21%  Similarity=0.473  Sum_probs=43.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+     ..|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            345678899999999987643  346888873  22211                 1123333321     138888999


Q ss_pred             cCCCCcEEEEEEEe
Q psy14532        174 KDHDRGVYWCTATN  187 (258)
Q Consensus       174 ~~~~~g~y~C~~~~  187 (258)
                      . +|.+.|.|....
T Consensus        88 ~-eDtAvYYCAr~~  100 (121)
T d1j05b_          88 S-EDTAVYYCAPFG  100 (121)
T ss_dssp             G-GGCEEEEEEEEB
T ss_pred             c-CcceEEEeEeec
Confidence            7 999999997543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00059  Score=40.83  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=38.9

Q ss_pred             eecCCcEEEEeeeCcc-cC---ceEEEEeCCcccCCCcc--eEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532        124 AIAGEPLYLGCPVAGY-PI---ESITWQKGVQQLPLNRR--QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ  189 (258)
Q Consensus       124 ~~~g~~~~l~C~~~~~-~~---~~i~W~~~~~~~~~~~~--~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~  189 (258)
                      +..++.++|.|.+.+. |.   ..+.|.+++........  .....+++      |.|..-.. ..+..|+|+|.+..
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w-~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDW-IEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHH-HTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEECC
Confidence            4456788999999874 43   36778887766543211  12233443      33322222 44568999999864

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00044  Score=41.44  Aligned_cols=26  Identities=23%  Similarity=0.606  Sum_probs=20.2

Q ss_pred             CCCceEEEEEEeec-C-CCeEEEeeCCE
Q psy14532         16 PGPPVSLKCIATGN-P-TPHISWKLDGY   41 (258)
Q Consensus        16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~   41 (258)
                      .+..++|.|.+.++ | ...|.|.+++.
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~   46 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGAL   46 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCC
Confidence            46789999999985 3 34899987764

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.00049  Score=42.24  Aligned_cols=65  Identities=20%  Similarity=0.463  Sum_probs=42.9

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~  173 (258)
                      ....+++|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+.     .|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            345678899999999998754  336788873  2221      1           11233443321     37888998


Q ss_pred             cCCCCcEEEEEE
Q psy14532        174 KDHDRGVYWCTA  185 (258)
Q Consensus       174 ~~~~~g~y~C~~  185 (258)
                      . +|.+.|.|.-
T Consensus        88 ~-eDtAvYYCAR   98 (127)
T d1n0xh1          88 S-ADTAVYYCAR   98 (127)
T ss_dssp             G-GGCEEEEEEE
T ss_pred             C-CCceEEEEEe
Confidence            7 9999999954

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.13  E-value=0.001  Score=40.88  Aligned_cols=68  Identities=25%  Similarity=0.473  Sum_probs=44.4

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC---C--eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN---G--TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~---~--~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...+..+..+   .  .|.|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            345578899999999998754  335778763  22110                 1233444332   1  37888898


Q ss_pred             cCCCCcEEEEEEEeC
Q psy14532        174 KDHDRGVYWCTATNK  188 (258)
Q Consensus       174 ~~~~~g~y~C~~~~~  188 (258)
                      . +|.+.|.|.....
T Consensus        88 ~-eDTA~YYCAr~~~  101 (128)
T d2nxyd1          88 S-DDTAVYFCAGVYE  101 (128)
T ss_dssp             G-GGCEEEEEEEEEC
T ss_pred             c-cCceEEEEeEEec
Confidence            7 9999999986543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.13  E-value=0.0004  Score=42.44  Aligned_cols=66  Identities=18%  Similarity=0.478  Sum_probs=43.2

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC---C--eEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN---G--TLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~---~--~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+   .  .|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            34577899999999987753  335788773  2211      1           1223344322   1  388889987


Q ss_pred             CCCCcEEEEEEEe
Q psy14532        175 DHDRGVYWCTATN  187 (258)
Q Consensus       175 ~~~~g~y~C~~~~  187 (258)
                       +|.+.|.|....
T Consensus        89 -eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 -EDTAMYYCVRHE  100 (123)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -CcccceeEEecC
Confidence             999999997654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.00071  Score=41.49  Aligned_cols=65  Identities=22%  Similarity=0.450  Sum_probs=42.8

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecC---C--eEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPN---G--TLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~---~--~l~i~~~~  173 (258)
                      ....+++|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...++.+..+   .  .|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            345678899999999998754  336788772  2221      1           1133334322   1  48888998


Q ss_pred             cCCCCcEEEEEE
Q psy14532        174 KDHDRGVYWCTA  185 (258)
Q Consensus       174 ~~~~~g~y~C~~  185 (258)
                      . +|.+.|.|.-
T Consensus        87 ~-eDTAvYYCAr   97 (126)
T d1lmka1          87 S-EDSAVYYCAR   97 (126)
T ss_dssp             G-GGCEEEEEEE
T ss_pred             C-CcceEEEEee
Confidence            7 9999999964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.00067  Score=41.16  Aligned_cols=66  Identities=20%  Similarity=0.458  Sum_probs=43.0

Q ss_pred             CCcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC-----CeEEEEecc
Q psy14532        120 GNVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN-----GTLLIENVQ  173 (258)
Q Consensus       120 ~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~-----~~l~i~~~~  173 (258)
                      ....+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...++.+..+     ..|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            345678899999999998754  336788773  22210                 1123333322     147888998


Q ss_pred             cCCCCcEEEEEEE
Q psy14532        174 KDHDRGVYWCTAT  186 (258)
Q Consensus       174 ~~~~~g~y~C~~~  186 (258)
                      . +|.+.|.|...
T Consensus        88 ~-eDTAvYYCAr~   99 (120)
T d1ad9b1          88 S-EDTAFYFCARE   99 (120)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             C-CcceEEEEEEc
Confidence            7 99999999653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.11  E-value=0.00054  Score=41.49  Aligned_cols=64  Identities=20%  Similarity=0.475  Sum_probs=42.7

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--CcccC----------------CCcceEEecCC-----eEEEEecccCC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP----------------LNRRQKVFPNG-----TLLIENVQKDH  176 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~----------------~~~~~~~~~~~-----~l~i~~~~~~~  176 (258)
                      ..+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                ...+..+..+.     .|.|.+++. +
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~-e   88 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS-E   88 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG-G
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC-C
Confidence            4577899999999998754  347788873  22211                11233343221     488889987 9


Q ss_pred             CCcEEEEEEE
Q psy14532        177 DRGVYWCTAT  186 (258)
Q Consensus       177 ~~g~y~C~~~  186 (258)
                      |.+.|.|.-.
T Consensus        89 DtA~YyCAr~   98 (118)
T d1lo4h1          89 DTAIYYCARG   98 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeccc
Confidence            9999999654

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0003  Score=42.22  Aligned_cols=38  Identities=11%  Similarity=0.198  Sum_probs=26.0

Q ss_pred             eeceeeeecCCCceEEEEEEeec-CC---CeEEEeeCCEeCc
Q psy14532          7 YKFIQQTLQPGPPVSLKCIATGN-PT---PHISWKLDGYPLA   44 (258)
Q Consensus         7 ~~~~~~~~~~g~~v~l~C~~~~~-~~---~~v~W~~~~~~~~   44 (258)
                      ..|....+..++.++|.|.+.++ |.   ..+.|++++....
T Consensus         6 ~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~   47 (103)
T d1fp5a1           6 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPV   47 (103)
T ss_dssp             ECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCC
T ss_pred             eCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceec
Confidence            44444446678899999999985 43   2567888766543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.00055  Score=41.77  Aligned_cols=64  Identities=19%  Similarity=0.458  Sum_probs=42.2

Q ss_pred             cceecCCcEEEEeeeCccc--CceEEEEeC--Cccc------C-----------CCcceEEecCC-----eEEEEecccC
Q psy14532        122 VSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQL------P-----------LNRRQKVFPNG-----TLLIENVQKD  175 (258)
Q Consensus       122 ~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~-----~l~i~~~~~~  175 (258)
                      ..+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+      .           ...+..+..+.     .|.|.+++. 
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~-   88 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA-   88 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc-
Confidence            4567899999999997743  336788873  2221      1           11233343321     488889987 


Q ss_pred             CCCcEEEEEEE
Q psy14532        176 HDRGVYWCTAT  186 (258)
Q Consensus       176 ~~~g~y~C~~~  186 (258)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.10  E-value=0.00043  Score=42.35  Aligned_cols=66  Identities=18%  Similarity=0.395  Sum_probs=42.9

Q ss_pred             CcceecCCcEEEEeeeCccc--CceEEEEeC--CcccC-----------------CCcceEEecC-----CeEEEEeccc
Q psy14532        121 NVSAIAGEPLYLGCPVAGYP--IESITWQKG--VQQLP-----------------LNRRQKVFPN-----GTLLIENVQK  174 (258)
Q Consensus       121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~-----~~l~i~~~~~  174 (258)
                      ...+.+|+++.|.|.+.|..  .-.+.|+|.  ++.+.                 ...++.+..+     ..|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            34567899999999998754  336788873  22110                 1123333322     1478888987


Q ss_pred             CCCCcEEEEEEEe
Q psy14532        175 DHDRGVYWCTATN  187 (258)
Q Consensus       175 ~~~~g~y~C~~~~  187 (258)
                       +|.+.|.|....
T Consensus        89 -eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 -EDTAIYYCTRGG  100 (122)
T ss_dssp             -GGCEEEEEEEEC
T ss_pred             -cCceEEEeecCC
Confidence             999999996543